------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 7 sequences from file NMT_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 7 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename NMT_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: NMT_AJECA 529 NMT_BOVIN 55 NMT_CAEEL 450 NMT_CANAL 451 NMT_CRYNE 491 NMT_HUMAN 416 NMT_YEAST 455 Pratt run started at Thu Feb 6 20:25:15 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 41.2005 7( 7) E-x(3,4)-L-L-x(3)-Y-V-E-D-x(4)-F-R-F 2: 39.7005 7( 7) L-L-x(0,2)-N-x(0,2)-Y-V-E-D-x(4)-F-R-F 3: 37.0305 7( 7) L-x(2)-N-x(0,1)-Y-V-E-D-x(4)-F-R-F 4: 35.5305 11( 7) L-x(0,2)-N-x(0,2)-Y-V-E-D-x(4)-F-R-F 5: 32.8604 7( 7) N-x(0,1)-Y-V-E-D-x(4)-F-R-F 6: 32.3604 10( 7) N-x(0,2)-Y-V-E-D-x(4)-F-R-F 7: 29.1904 7( 7) Y-V-E-D-x(4)-F-R-F 8: 25.0203 7( 7) V-E-D-x(4)-F-R-F 9: 20.8503 7( 7) E-D-x(4)-F-R-F 10: 19.3503 8( 7) D-x(5)-E-x(3,4)-L-L-x(0,2)-N 11: 18.8503 7( 7) F-x(1,3)-D-x(2)-L-x(3)-L-x(0,2)-Y 12: 16.6802 7( 7) V-x-N-x-L-x(4)-N 13: 16.6802 7( 7) D-x(2)-N-x-L-x(4)-N 14: 16.6802 7( 7) D-x(4)-F-R-F 15: 16.1802 11( 7) D-x(3,4)-F-R-F 16: 16.1802 7( 7) F-x(2)-G-x-G-x(3,4)-Y 17: 15.6802 11( 7) D-V-x(0,2)-F-x(2)-L 18: 15.6802 17( 7) D-x(2,4)-F-R-F 19: 15.6802 7( 7) K-x(0,1)-L-x(2,3)-L-x(2)-E 20: 15.6802 7( 7) V-x(0,1)-L-x(2)-E-x(1,2)-T Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 58.3644 7( 7) E-x(3,4)-L-L-x-[DENR]-x-Y-V-E-D-x-[DS]-[ANS]-x-F-R-F-x(4)-[ADE]-[FL]-x(3)-[AE] B 2: 54.6889 7( 7) L-L-x(0,2)-N-x(0,2)-Y-V-E-D-x-[DS]-[ANS]-x-F-R-F-x(4)-[ADE]-[FL]-x(3)-[AE] C 3: 52.0188 7( 7) L-x(2)-N-x(0,1)-Y-V-E-D-x-[DS]-[ANS]-x-F-R-F-x(4)-[ADE]-[FL]-x(3)-[AE] D 4: 50.5188 11( 7) L-x(0,2)-N-x(0,2)-Y-V-E-D-x-[DS]-[ANS]-x-F-R-F-x(4)-[ADE]-[FL]-x(3)-[AE] E 5: 47.8488 7( 7) N-x(0,1)-Y-V-E-D-x-[DS]-[ANS]-x-F-R-F-x(4)-[ADE]-[FL]-x(3)-[AE] F 6: 47.3488 10( 7) N-x(0,2)-Y-V-E-D-x-[DS]-[ANS]-x-F-R-F-x(4)-[ADE]-[FL]-x(3)-[AE] G 7: 44.1787 7( 7) Y-V-E-D-x-[DS]-[ANS]-x-F-R-F-x(4)-[ADE]-[FL]-x(3)-[AE] H 8: 40.0087 7( 7) V-E-D-x-[DS]-[ANS]-x-F-R-F-x(4)-[ADE]-[FL]-x(3)-[AE] I 9: 35.8386 7( 7) E-D-x-[DS]-[ANS]-x-F-R-F-x(4)-[ADE]-[FL]-x(3)-[AE] J 10: 34.9112 7( 7) D-x(5)-E-x(3,4)-L-L-x(0,2)-N-[HY]-x(2)-[DE]-x-[DG]-[ANS]-x-[FM] K 11: 33.2794 7( 7) D-V-[FM]-N-[AC]-L-[DT]-x(2)-[DEH]-N L 12: 32.6410 7( 7) E-D-x(2)-[ANS]-x-F-R-F-x(4)-[ADE]-[FL]-x(3)-[AE] M 13: 31.6686 7( 7) D-x-[DS]-[ANS]-x-F-R-F-x(4)-[ADE]-[FL]-x(3)-[AE] N 14: 30.2169 7( 7) V-x(0,1)-L-[FI]-[KR]-E-x(1,2)-T-x(2)-[CNV]-x(3)-[DGNV]-x(3)-[AD] O 15: 29.9906 7( 7) E-D-x(4)-F-R-F-x(4)-[ADE]-[FL]-x(3)-[AE] P 16: 29.1094 7( 7) V-[FM]-N-[AC]-L-[DT]-x(2)-[DEH]-N Q 17: 25.8062 7( 7) F-[GS]-x-G-[DQ]-G-x(3,4)-Y-x-[FL] R 18: 25.3205 11( 7) D-x(3,4)-F-R-F-x(4)-[ADE]-[FL]-x(3)-[AE] S 19: 24.8205 17( 7) D-x(2,4)-F-R-F-x(4)-[ADE]-[FL]-x(3)-[AE] T 20: 23.7435 7( 7) K-x(0,1)-L-x(2,3)-L-[ILP]-x-E-x(3)-[ER]-[CDNV] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 58.3644 7( 7) E-x(3,4)-L-L-x-[DENR]-x-Y-V-E-D-x-[DS]-[ANS]-x-F-R-F-x(4)-[ADE]-[FL]-x(3)-[AE] Occurences: 7(7) NMT_AJECA : 175- 204: eadvk Efye-LLaNhYVEDgSAmFRFnyspAFlnwA lkapg NMT_BOVIN : 24- 53: vqlfk Elyt-LLnEnYVEDdDNmFRFdvfnALdlmE nk NMT_CAEEL : 124- 153: eeqln Elyn-LLtRnYVEDdDSmFRFdysaDFlkwA lqvpg NMT_CANAL : 98- 127: nlqld Elyk-LLyDnYVEDiDAtFRFkyshEFfqwA lkppg NMT_CRYNE : 105- 134: eeqsk Evyv-LLcEnYVEDdDAmFRFnysrEFllwA ltapg NMT_HUMAN : 91- 120: rgvlk Elyt-LLnEnYVEDdDNmFRFdyspEFllwA lrppg NMT_YEAST : 93- 123: nkkql EdvfvLLnEnYVEDrDAgFRFnytkEFfnwA lkspg B 2: 54.6889 7( 7) L-L-x(0,2)-N-x(0,2)-Y-V-E-D-x-[DS]-[ANS]-x-F-R-F-x(4)-[ADE]-[FL]-x(3)-[AE] Occurences: 7(7) NMT_AJECA : 179- 204: kefye LLa-Nh-YVEDgSAmFRFnyspAFlnwA lkapg NMT_BOVIN : 28- 53: kelyt LLneN--YVEDdDNmFRFdvfnALdlmE nk NMT_BOVIN : 28- 53: kelyt LL--NenYVEDdDNmFRFdvfnALdlmE nk NMT_CAEEL : 128- 153: nelyn LLtrN--YVEDdDSmFRFdysaDFlkwA lqvpg NMT_CANAL : 102- 127: delyk LLydN--YVEDiDAtFRFkyshEFfqwA lkppg NMT_CRYNE : 109- 134: kevyv LLceN--YVEDdDAmFRFnysrEFllwA ltapg NMT_HUMAN : 95- 120: kelyt LLneN--YVEDdDNmFRFdyspEFllwA lrppg NMT_HUMAN : 95- 120: kelyt LL--NenYVEDdDNmFRFdyspEFllwA lrppg NMT_YEAST : 98- 123: edvfv LLneN--YVEDrDAgFRFnytkEFfnwA lkspg NMT_YEAST : 98- 123: edvfv LL--NenYVEDrDAgFRFnytkEFfnwA lkspg C 3: 52.0188 7( 7) L-x(2)-N-x(0,1)-Y-V-E-D-x-[DS]-[ANS]-x-F-R-F-x(4)-[ADE]-[FL]-x(3)-[AE] Occurences: 7(7) NMT_AJECA : 179- 204: kefye LlaNhYVEDgSAmFRFnyspAFlnwA lkapg NMT_BOVIN : 29- 53: elytl LneN-YVEDdDNmFRFdvfnALdlmE nk NMT_CAEEL : 129- 153: elynl LtrN-YVEDdDSmFRFdysaDFlkwA lqvpg NMT_CANAL : 103- 127: elykl LydN-YVEDiDAtFRFkyshEFfqwA lkppg NMT_CRYNE : 110- 134: evyvl LceN-YVEDdDAmFRFnysrEFllwA ltapg NMT_HUMAN : 96- 120: elytl LneN-YVEDdDNmFRFdyspEFllwA lrppg NMT_YEAST : 99- 123: dvfvl LneN-YVEDrDAgFRFnytkEFfnwA lkspg D 4: 50.5188 11( 7) L-x(0,2)-N-x(0,2)-Y-V-E-D-x-[DS]-[ANS]-x-F-R-F-x(4)-[ADE]-[FL]-x(3)-[AE] Occurences: 11(7) NMT_AJECA : 179- 204: kefye LlaNh-YVEDgSAmFRFnyspAFlnwA lkapg NMT_AJECA : 180- 204: efyel La-Nh-YVEDgSAmFRFnyspAFlnwA lkapg NMT_BOVIN : 28- 53: kelyt Ll-NenYVEDdDNmFRFdvfnALdlmE nk NMT_BOVIN : 29- 53: elytl LneN--YVEDdDNmFRFdvfnALdlmE nk NMT_BOVIN : 29- 53: elytl L--NenYVEDdDNmFRFdvfnALdlmE nk NMT_CAEEL : 129- 153: elynl LtrN--YVEDdDSmFRFdysaDFlkwA lqvpg NMT_CANAL : 103- 127: elykl LydN--YVEDiDAtFRFkyshEFfqwA lkppg NMT_CRYNE : 110- 134: evyvl LceN--YVEDdDAmFRFnysrEFllwA ltapg NMT_HUMAN : 95- 120: kelyt Ll-NenYVEDdDNmFRFdyspEFllwA lrppg NMT_HUMAN : 96- 120: elytl LneN--YVEDdDNmFRFdyspEFllwA lrppg NMT_HUMAN : 96- 120: elytl L--NenYVEDdDNmFRFdyspEFllwA lrppg NMT_YEAST : 98- 123: edvfv Ll-NenYVEDrDAgFRFnytkEFfnwA lkspg NMT_YEAST : 99- 123: dvfvl LneN--YVEDrDAgFRFnytkEFfnwA lkspg NMT_YEAST : 99- 123: dvfvl L--NenYVEDrDAgFRFnytkEFfnwA lkspg E 5: 47.8488 7( 7) N-x(0,1)-Y-V-E-D-x-[DS]-[ANS]-x-F-R-F-x(4)-[ADE]-[FL]-x(3)-[AE] Occurences: 7(7) NMT_AJECA : 182- 204: yella NhYVEDgSAmFRFnyspAFlnwA lkapg NMT_BOVIN : 32- 53: tllne N-YVEDdDNmFRFdvfnALdlmE nk NMT_CAEEL : 132- 153: nlltr N-YVEDdDSmFRFdysaDFlkwA lqvpg NMT_CANAL : 106- 127: kllyd N-YVEDiDAtFRFkyshEFfqwA lkppg NMT_CRYNE : 113- 134: vllce N-YVEDdDAmFRFnysrEFllwA ltapg NMT_HUMAN : 99- 120: tllne N-YVEDdDNmFRFdyspEFllwA lrppg NMT_YEAST : 102- 123: vllne N-YVEDrDAgFRFnytkEFfnwA lkspg F 6: 47.3488 10( 7) N-x(0,2)-Y-V-E-D-x-[DS]-[ANS]-x-F-R-F-x(4)-[ADE]-[FL]-x(3)-[AE] Occurences: 10(7) NMT_AJECA : 182- 204: yella Nh-YVEDgSAmFRFnyspAFlnwA lkapg NMT_BOVIN : 30- 53: lytll NenYVEDdDNmFRFdvfnALdlmE nk NMT_BOVIN : 32- 53: tllne N--YVEDdDNmFRFdvfnALdlmE nk NMT_CAEEL : 132- 153: nlltr N--YVEDdDSmFRFdysaDFlkwA lqvpg NMT_CANAL : 106- 127: kllyd N--YVEDiDAtFRFkyshEFfqwA lkppg NMT_CRYNE : 113- 134: vllce N--YVEDdDAmFRFnysrEFllwA ltapg NMT_HUMAN : 97- 120: lytll NenYVEDdDNmFRFdyspEFllwA lrppg NMT_HUMAN : 99- 120: tllne N--YVEDdDNmFRFdyspEFllwA lrppg NMT_YEAST : 100- 123: vfvll NenYVEDrDAgFRFnytkEFfnwA lkspg NMT_YEAST : 102- 123: vllne N--YVEDrDAgFRFnytkEFfnwA lkspg G 7: 44.1787 7( 7) Y-V-E-D-x-[DS]-[ANS]-x-F-R-F-x(4)-[ADE]-[FL]-x(3)-[AE] Occurences: 7(7) NMT_AJECA : 184- 204: llanh YVEDgSAmFRFnyspAFlnwA lkapg NMT_BOVIN : 33- 53: llnen YVEDdDNmFRFdvfnALdlmE nk NMT_CAEEL : 133- 153: lltrn YVEDdDSmFRFdysaDFlkwA lqvpg NMT_CANAL : 107- 127: llydn YVEDiDAtFRFkyshEFfqwA lkppg NMT_CRYNE : 114- 134: llcen YVEDdDAmFRFnysrEFllwA ltapg NMT_HUMAN : 100- 120: llnen YVEDdDNmFRFdyspEFllwA lrppg NMT_YEAST : 103- 123: llnen YVEDrDAgFRFnytkEFfnwA lkspg H 8: 40.0087 7( 7) V-E-D-x-[DS]-[ANS]-x-F-R-F-x(4)-[ADE]-[FL]-x(3)-[AE] Occurences: 7(7) NMT_AJECA : 185- 204: lanhy VEDgSAmFRFnyspAFlnwA lkapg NMT_BOVIN : 34- 53: lneny VEDdDNmFRFdvfnALdlmE nk NMT_CAEEL : 134- 153: ltrny VEDdDSmFRFdysaDFlkwA lqvpg NMT_CANAL : 108- 127: lydny VEDiDAtFRFkyshEFfqwA lkppg NMT_CRYNE : 115- 134: lceny VEDdDAmFRFnysrEFllwA ltapg NMT_HUMAN : 101- 120: lneny VEDdDNmFRFdyspEFllwA lrppg NMT_YEAST : 104- 123: lneny VEDrDAgFRFnytkEFfnwA lkspg I 9: 35.8386 7( 7) E-D-x-[DS]-[ANS]-x-F-R-F-x(4)-[ADE]-[FL]-x(3)-[AE] Occurences: 7(7) NMT_AJECA : 186- 204: anhyv EDgSAmFRFnyspAFlnwA lkapg NMT_BOVIN : 35- 53: nenyv EDdDNmFRFdvfnALdlmE nk NMT_CAEEL : 135- 153: trnyv EDdDSmFRFdysaDFlkwA lqvpg NMT_CANAL : 109- 127: ydnyv EDiDAtFRFkyshEFfqwA lkppg NMT_CRYNE : 116- 134: cenyv EDdDAmFRFnysrEFllwA ltapg NMT_HUMAN : 102- 120: nenyv EDdDNmFRFdyspEFllwA lrppg NMT_YEAST : 105- 123: nenyv EDrDAgFRFnytkEFfnwA lkspg J 10: 34.9112 7( 7) D-x(5)-E-x(3,4)-L-L-x(0,2)-N-[HY]-x(2)-[DE]-x-[DG]-[ANS]-x-[FM] Occurences: 7(7) NMT_AJECA : 169- 191: tldid DeadvkEfye-LLa-NHyvEdGSaM frfny NMT_BOVIN : 18- 41: syqfw DvqlfkElyt-LLneNYveDdDNmF rfdvf NMT_CAEEL : 118- 141: nvdls DeeqlnElyn-LLtrNYveDdDSmF rfdys NMT_CANAL : 92- 115: tldid DnlqldElyk-LLydNYveDiDAtF rfkys NMT_CRYNE : 99- 122: tidin DeeqskEvyv-LLceNYveDdDAmF rfnys NMT_HUMAN : 85- 108: aldlg DrgvlkElyt-LLneNYveDdDNmF rfdys NMT_YEAST : 87- 111: csidv DnkkqlEdvfvLLneNYveDrDAgF rfnyt K 11: 33.2794 7( 7) D-V-[FM]-N-[AC]-L-[DT]-x(2)-[DEH]-N Occurences: 7(7) NMT_AJECA : 468- 478: kkerf DVMNALTlhDN plfle NMT_BOVIN : 44- 54: nmfrf DVFNALDlmEN k NMT_CAEEL : 402- 412: nrekf DVFNALDlmHN ekifs NMT_CANAL : 389- 399: kkfgv DVFNCLTcqDN tyflk NMT_CRYNE : 433- 443: kqagf DVFNALTllDN nmflq NMT_HUMAN : 368- 378: kmkgf DVFNALDlmEN ktfle NMT_YEAST : 394- 404: knanm DVFNALTsqDN tlfld L 12: 32.6410 7( 7) E-D-x(2)-[ANS]-x-F-R-F-x(4)-[ADE]-[FL]-x(3)-[AE] Occurences: 7(7) NMT_AJECA : 186- 204: anhyv EDgsAmFRFnyspAFlnwA lkapg NMT_BOVIN : 35- 53: nenyv EDddNmFRFdvfnALdlmE nk NMT_CAEEL : 135- 153: trnyv EDddSmFRFdysaDFlkwA lqvpg NMT_CANAL : 109- 127: ydnyv EDidAtFRFkyshEFfqwA lkppg NMT_CRYNE : 116- 134: cenyv EDddAmFRFnysrEFllwA ltapg NMT_HUMAN : 102- 120: nenyv EDddNmFRFdyspEFllwA lrppg NMT_YEAST : 105- 123: nenyv EDrdAgFRFnytkEFfnwA lkspg M 13: 31.6686 7( 7) D-x-[DS]-[ANS]-x-F-R-F-x(4)-[ADE]-[FL]-x(3)-[AE] Occurences: 7(7) NMT_AJECA : 187- 204: nhyve DgSAmFRFnyspAFlnwA lkapg NMT_BOVIN : 36- 53: enyve DdDNmFRFdvfnALdlmE nk NMT_CAEEL : 136- 153: rnyve DdDSmFRFdysaDFlkwA lqvpg NMT_CANAL : 110- 127: dnyve DiDAtFRFkyshEFfqwA lkppg NMT_CRYNE : 117- 134: enyve DdDAmFRFnysrEFllwA ltapg NMT_HUMAN : 103- 120: enyve DdDNmFRFdyspEFllwA lrppg NMT_YEAST : 106- 123: enyve DrDAgFRFnytkEFfnwA lkspg N 14: 30.2169 7( 7) V-x(0,1)-L-[FI]-[KR]-E-x(1,2)-T-x(2)-[CNV]-x(3)-[DGNV]-x(3)-[AD] Occurences: 7(7) NMT_AJECA : 266- 283: krltp V-LIKEi-TrrCylnGiyqA iytvg NMT_BOVIN : 19- 38: yqfwd VqLFKElyTllNenyVeddD nmfrf NMT_CAEEL : 215- 232: rrvap V-LIREi-TrrVnvtGifqA aftag NMT_CANAL : 191- 208: krlap V-LIKEi-TrrVnkqNiwqA lytgg NMT_CRYNE : 196- 213: krlap V-LIKEv-TrrVnltNiwqA iytag NMT_HUMAN : 182- 199: krvap V-LIREi-TrrVhleGifqA vytag NMT_YEAST : 185- 202: krltp V-LIKEi-TrrVnkcDiwhA lytag O 15: 29.9906 7( 7) E-D-x(4)-F-R-F-x(4)-[ADE]-[FL]-x(3)-[AE] Occurences: 7(7) NMT_AJECA : 186- 204: anhyv EDgsamFRFnyspAFlnwA lkapg NMT_BOVIN : 35- 53: nenyv EDddnmFRFdvfnALdlmE nk NMT_CAEEL : 135- 153: trnyv EDddsmFRFdysaDFlkwA lqvpg NMT_CANAL : 109- 127: ydnyv EDidatFRFkyshEFfqwA lkppg NMT_CRYNE : 116- 134: cenyv EDddamFRFnysrEFllwA ltapg NMT_HUMAN : 102- 120: nenyv EDddnmFRFdyspEFllwA lrppg NMT_YEAST : 105- 123: nenyv EDrdagFRFnytkEFfnwA lkspg P 16: 29.1094 7( 7) V-[FM]-N-[AC]-L-[DT]-x(2)-[DEH]-N Occurences: 7(7) NMT_AJECA : 469- 478: kerfd VMNALTlhDN plfle NMT_BOVIN : 45- 54: mfrfd VFNALDlmEN k NMT_CAEEL : 403- 412: rekfd VFNALDlmHN ekifs NMT_CANAL : 390- 399: kfgvd VFNCLTcqDN tyflk NMT_CRYNE : 434- 443: qagfd VFNALTllDN nmflq NMT_HUMAN : 369- 378: mkgfd VFNALDlmEN ktfle NMT_YEAST : 395- 404: nanmd VFNALTsqDN tlfld Q 17: 25.8062 7( 7) F-[GS]-x-G-[DQ]-G-x(3,4)-Y-x-[FL] Occurences: 7(7) NMT_AJECA : 487- 498: leqlk FGaGDGqlh-YyL fnyrt NMT_AJECA : 487- 499: leqlk FGaGDGqlhyYlF nyrta NMT_BOVIN : 5- 16: aiel FSvGQGaks-YqF wdvql NMT_CAEEL : 421- 432: fsdlk FGkGDGnlq-YyL ynwkc NMT_CANAL : 408- 419: lkdck FGsGDGfln-YyL fnyrt NMT_CANAL : 408- 420: lkdck FGsGDGflnyYlF nyrtf NMT_CRYNE : 452- 463: lqeqk FGpGDGyln-YyL ynwnc NMT_HUMAN : 387- 398: leklk FGiGDGnlq-YyL ynwkc NMT_YEAST : 413- 425: lddlk FGpGDGflnfYlF nyrak R 18: 25.3205 11( 7) D-x(3,4)-F-R-F-x(4)-[ADE]-[FL]-x(3)-[AE] Occurences: 11(7) NMT_AJECA : 187- 204: nhyve DgsamFRFnyspAFlnwA lkapg NMT_BOVIN : 36- 53: enyve DddnmFRFdvfnALdlmE nk NMT_BOVIN : 37- 53: nyved Ddnm-FRFdvfnALdlmE nk NMT_CAEEL : 136- 153: rnyve DddsmFRFdysaDFlkwA lqvpg NMT_CAEEL : 137- 153: nyved Ddsm-FRFdysaDFlkwA lqvpg NMT_CANAL : 110- 127: dnyve DidatFRFkyshEFfqwA lkppg NMT_CRYNE : 117- 134: enyve DddamFRFnysrEFllwA ltapg NMT_CRYNE : 118- 134: nyved Ddam-FRFnysrEFllwA ltapg NMT_HUMAN : 103- 120: enyve DddnmFRFdyspEFllwA lrppg NMT_HUMAN : 104- 120: nyved Ddnm-FRFdyspEFllwA lrppg NMT_YEAST : 106- 123: enyve DrdagFRFnytkEFfnwA lkspg S 19: 24.8205 17( 7) D-x(2,4)-F-R-F-x(4)-[ADE]-[FL]-x(3)-[AE] Occurences: 17(7) NMT_AJECA : 187- 204: nhyve DgsamFRFnyspAFlnwA lkapg NMT_BOVIN : 36- 53: enyve DddnmFRFdvfnALdlmE nk NMT_BOVIN : 37- 53: nyved Ddnm-FRFdvfnALdlmE nk NMT_BOVIN : 38- 53: yvedd Dnm--FRFdvfnALdlmE nk NMT_CAEEL : 136- 153: rnyve DddsmFRFdysaDFlkwA lqvpg NMT_CAEEL : 137- 153: nyved Ddsm-FRFdysaDFlkwA lqvpg NMT_CAEEL : 138- 153: yvedd Dsm--FRFdysaDFlkwA lqvpg NMT_CANAL : 110- 127: dnyve DidatFRFkyshEFfqwA lkppg NMT_CANAL : 112- 127: yvedi Dat--FRFkyshEFfqwA lkppg NMT_CRYNE : 117- 134: enyve DddamFRFnysrEFllwA ltapg NMT_CRYNE : 118- 134: nyved Ddam-FRFnysrEFllwA ltapg NMT_CRYNE : 119- 134: yvedd Dam--FRFnysrEFllwA ltapg NMT_HUMAN : 103- 120: enyve DddnmFRFdyspEFllwA lrppg NMT_HUMAN : 104- 120: nyved Ddnm-FRFdyspEFllwA lrppg NMT_HUMAN : 105- 120: yvedd Dnm--FRFdyspEFllwA lrppg NMT_YEAST : 106- 123: enyve DrdagFRFnytkEFfnwA lkspg NMT_YEAST : 108- 123: yvedr Dag--FRFnytkEFfnwA lkspg T 20: 23.7435 7( 7) K-x(0,1)-L-x(2,3)-L-[ILP]-x-E-x(3)-[ER]-[CDNV] Occurences: 7(7) NMT_AJECA : 261- 275: kklrs KrLtpvLIkEitrRC ylngi NMT_BOVIN : 23- 36: dvqlf KeLyt-LLnEnyvED ddnmf NMT_CAEEL : 278- 290: marti K-Lyk-LPeEtatRN lremk NMT_CANAL : 186- 200: kklrn KrLapvLIkEitrRV nkqni NMT_CRYNE : 191- 205: kklrs KrLapvLIkEvtrRV nltni NMT_HUMAN : 90- 103: drgvl KeLyt-LLnEnyvED ddnmf NMT_YEAST : 180- 194: kqlrs KrLtpvLIkEitrRV nkcdi Number of patterns evaluated by Pratt:2405 Total running time: 2 seconds