------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 7 sequences from file NI_HGENASE_CYTB_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 7 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename NI_HGENASE_CYTB_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CYBH_ALCEU 244 CYBH_AZOVI 240 CYBH_BRAJA 111 CYBH_ECOLI 235 CYBH_RHILV 239 CYBH_RHOCA 262 CYBH_WOLSU 230 Pratt run started at Thu Feb 6 20:25:11 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 20.8503 7( 7) L-x(2)-T-G-x(2)-I-x(2)-P 2: 19.8503 7( 7) E-x(0,2)-A-x(2)-R-x(2)-H-W 3: 16.6802 7( 7) T-G-x(2)-I-x(2)-P 4: 16.6802 7( 7) A-x(2)-R-x(2)-H-W 5: 16.1802 7( 7) R-x(3)-W-x(2,3)-A-x(2)-I 6: 15.6802 7( 7) G-x(0,1)-Y-I-x(3,4)-F 7: 15.6802 7( 7) G-x(2,3)-R-x(3)-F-x(0,1)-A 8: 15.6802 8( 7) I-x(2,3)-L-x(1,2)-V-x-G 9: 15.1802 7( 7) R-x(1,3)-A-x(0,1)-F-V 10: 15.1802 7( 7) M-x(0,1)-Y-x(1,3)-R-x(2)-H 11: 15.1802 7( 7) M-x(3,4)-R-x(2)-H-x(0,2)-F 12: 15.1802 10( 7) I-x(1,3)-L-x(1,2)-V-x-G 13: 15.1802 7( 7) Y-x(2,3)-A-x(0,2)-R-x(2)-H 14: 14.6802 7( 7) R-x(2)-H-x(0,2)-F-x(0,2)-A 15: 14.6802 7( 7) Y-x(1,3)-R-x(2)-H-x(0,2)-F 16: 14.6802 7( 7) M-x(0,2)-G-x(2,4)-R-x(2)-H 17: 12.5102 10( 7) A-x-V-x(3)-H 18: 12.5102 7( 7) A-x(5)-M-x(2)-I 19: 12.5102 7( 7) G-x(2)-I-x(2)-P 20: 12.5102 7( 7) R-x(2)-H-W Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 79.0843 7( 7) E-x(0,2)-A-[LP]-x-R-x(2)-H-W-[ILV]-x-[AV]-[FIL]-[ACS]-[IM]-x(2)-L-x-[LV]-T-G-[FY]-x-I-[AG]-x-P-x-[ALP]-[ST]-x(3)-[EGN]-[AES] B 2: 75.9143 7( 7) A-[LP]-x-R-x(2)-H-W-[ILV]-x-[AV]-[FIL]-[ACS]-[IM]-x(2)-L-x-[LV]-T-G-[FY]-x-I-[AG]-x-P-x-[ALP]-[ST]-x(3)-[EGN]-[AES] C 3: 68.5267 7( 7) R-x(2)-H-W-[ILV]-x-[AV]-[FIL]-[ACS]-[IM]-x(2)-L-x-[LV]-T-G-[FY]-x-I-[AG]-x-P-x-[ALP]-[ST]-x(3)-[EGN]-[AES] D 4: 59.5501 7( 7) M-x(0,2)-G-x(2,4)-R-x-[AI]-H-[FH]-x-[AT]-[AGT]-x-[AILV]-[FLM]-[ASTV]-[IV]-x-[FILM]-x(2)-[HR]-[IV]-x(2)-A-x(2)-[GN]-[NS]-x(4)-[ENQ] E 5: 49.2829 7( 7) R-x(3)-W-x(2,3)-A-[FIL]-[ASV]-I-x(2)-[LV]-x-[LMV]-[AT]-[GL]-x(3)-[AGI]-x-[PS]-x(2)-[ST]-x(3)-[EGNT]-x(2)-[ADNPT]-[DGNT] F 6: 41.4801 7( 7) L-x-[LV]-T-G-[FY]-x-I-[AG]-x-P-x-[ALP]-[ST]-x(3)-[EGN]-[AES] G 7: 38.4125 7( 7) Y-x(2,3)-A-x(0,2)-R-x(2)-H-x-[ILV]-x-[AGV]-[FL]-[ACS]-[ILM]-x(2)-[LV]-x-[ILV]-x(4)-[IL] H 8: 36.2265 7( 7) M-x(0,1)-Y-x(1,3)-R-x(2)-H-x(3)-[AG]-x-[AILV]-[FLM]-x-[AIV]-x(2)-[FIL]-x-R-[IV] I 9: 36.1655 7( 7) A-x(5)-M-[GV]-x-I-x-[FL]-[AI]-x-[FV]-[ASTV]-[AG]-[AGI]-x-[ILV] J 10: 34.1264 7( 7) T-G-[FY]-x-I-[AG]-x-P-x-[ALP]-[ST]-x(3)-[EGN]-[AES] K 11: 30.9208 7( 7) M-x(3,4)-R-x(2)-H-x(0,2)-F-[AGSV]-x-[AG]-x-[ILV]-x-[ASTV]-x(2)-[FLM]-x(3)-[ILV] L 12: 30.4208 7( 7) Y-x(1,3)-R-x(2)-H-x(0,2)-F-[AGSV]-x-[AG]-x-[ILV]-x-[ASTV]-x(2)-[FLM]-x(3)-[ILV] M 13: 29.9563 7( 7) G-[FY]-x-I-[AG]-x-P-x-[ALP]-[ST]-x(3)-[EGN]-[AES] N 14: 29.8501 7( 7) R-x(2)-H-x(0,2)-F-x(0,2)-A-[AGL]-x-[AILV]-[FLV]-x(4)-[FILV]-x(4)-[FWY]-x(3)-[CGV] O 15: 24.1367 7( 7) G-x(2,3)-R-x-[AIL]-[EH]-F-x(0,1)-A-[AGL] P 16: 24.1094 7( 7) G-x(0,1)-Y-I-x(3,4)-F-x-[AT]-[AGP]-x(3)-[AST] Q 17: 21.5780 7( 7) A-x-V-x(3)-H-x(2)-[ENQT]-x(3)-[FIMV]-[AILPV]-[FIV] R 18: 17.8803 8( 7) I-x(2,3)-L-x(1,2)-V-[APST]-G S 19: 17.7655 7( 7) R-x(1,3)-A-x(0,1)-F-V-[AGL] T 20: 17.3803 10( 7) I-x(1,3)-L-x(1,2)-V-[APST]-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 79.0843 7( 7) E-x(0,2)-A-[LP]-x-R-x(2)-H-W-[ILV]-x-[AV]-[FIL]-[ACS]-[IM]-x(2)-L-x-[LV]-T-G-[FY]-x-I-[AG]-x-P-x-[ALP]-[ST]-x(3)-[EGN]-[AES] Occurences: 7(7) CYBH_ALCEU : 34- 69: atyvy E--APvRlwHWVnALAIvvLaVTGFfIGsPpATrpgEA sanfl CYBH_AZOVI : 26- 61: avyvy E--APlRlwHWVtALSIvvLgVTGYfIGaPlPTmpgEA mdnyl CYBH_BRAJA : 35- 70: tvyvy E--APvRicHWVnAFSIivLmVTGYlIGtPlPTvagEA sdnfv CYBH_ECOLI : 15- 50: shyvf E--APvRiwHWLtVLCMavLmVTGYfIGkPlPSvsgEA tylfy CYBH_RHILV : 26- 61: svyvy E--APvRiwHWInAFSIltLaLTGYfIGsPlPSvpgEA sanfl CYBH_RHOCA : 47- 82: svyvy E--APvRvwHWVnALAItiLvVTGYfIAsPlPSmqiGE atdqf CYBH_WOLSU : 16- 53: ferel EftALtRwfHWIrAIAIfvLiVTGFyIAyPfLTpikNS eptnf B 2: 75.9143 7( 7) A-[LP]-x-R-x(2)-H-W-[ILV]-x-[AV]-[FIL]-[ACS]-[IM]-x(2)-L-x-[LV]-T-G-[FY]-x-I-[AG]-x-P-x-[ALP]-[ST]-x(3)-[EGN]-[AES] Occurences: 7(7) CYBH_ALCEU : 35- 69: tyvye APvRlwHWVnALAIvvLaVTGFfIGsPpATrpgEA sanfl CYBH_AZOVI : 27- 61: vyvye APlRlwHWVtALSIvvLgVTGYfIGaPlPTmpgEA mdnyl CYBH_BRAJA : 36- 70: vyvye APvRicHWVnAFSIivLmVTGYlIGtPlPTvagEA sdnfv CYBH_ECOLI : 16- 50: hyvfe APvRiwHWLtVLCMavLmVTGYfIGkPlPSvsgEA tylfy CYBH_RHILV : 27- 61: vyvye APvRiwHWInAFSIltLaLTGYfIGsPlPSvpgEA sanfl CYBH_RHOCA : 48- 82: vyvye APvRvwHWVnALAItiLvVTGYfIAsPlPSmqiGE atdqf CYBH_WOLSU : 19- 53: eleft ALtRwfHWIrAIAIfvLiVTGFyIAyPfLTpikNS eptnf C 3: 68.5267 7( 7) R-x(2)-H-W-[ILV]-x-[AV]-[FIL]-[ACS]-[IM]-x(2)-L-x-[LV]-T-G-[FY]-x-I-[AG]-x-P-x-[ALP]-[ST]-x(3)-[EGN]-[AES] Occurences: 7(7) CYBH_ALCEU : 38- 69: yeapv RlwHWVnALAIvvLaVTGFfIGsPpATrpgEA sanfl CYBH_AZOVI : 30- 61: yeapl RlwHWVtALSIvvLgVTGYfIGaPlPTmpgEA mdnyl CYBH_BRAJA : 39- 70: yeapv RicHWVnAFSIivLmVTGYlIGtPlPTvagEA sdnfv CYBH_ECOLI : 19- 50: feapv RiwHWLtVLCMavLmVTGYfIGkPlPSvsgEA tylfy CYBH_RHILV : 30- 61: yeapv RiwHWInAFSIltLaLTGYfIGsPlPSvpgEA sanfl CYBH_RHOCA : 51- 82: yeapv RvwHWVnALAItiLvVTGYfIAsPlPSmqiGE atdqf CYBH_WOLSU : 22- 53: ftalt RwfHWIrAIAIfvLiVTGFyIAyPfLTpikNS eptnf D 4: 59.5501 7( 7) M-x(0,2)-G-x(2,4)-R-x-[AI]-H-[FH]-x-[AT]-[AGT]-x-[AILV]-[FLM]-[ASTV]-[IV]-x-[FILM]-x(2)-[HR]-[IV]-x(2)-A-x(2)-[GN]-[NS]-x(4)-[ENQ] Occurences: 7(7) CYBH_ALCEU : 75- 109: sanfl M--Gyi--RfAHFvAAyIFAIgMlgRIywAtaGNhhsrE lfsvp CYBH_AZOVI : 67- 101: mdnyl M--Gyi--RfAHFaAGyVLAIgFlgRVywAfvGNhharE lflvp CYBH_BRAJA : 76- 110: sdnfv M--Gyi--RfAHFaAGqVLAVfFltRIlwAfvGNhhsrQ i CYBH_ECOLI : 56- 90: tylfy M--Gyi--RlIHFsAGmVFTVvLlmRIywAfvGNrysrE lfivp CYBH_RHILV : 67- 101: sanfl M--Gyi--RfIHFaAGqLLAVfLilRVywAfvGNvharQ ifyvp CYBH_RHOCA : 89- 123: tdqfv M--Gyi--RfAHFaAGvVMSVaFfgRIywAfvGNrhawQ mfyip CYBH_WOLSU : 175- 213: kplev MfgGlanvRaIHHiTTwAFVIfIpvHIymAtwNSarypN ggids E 5: 49.2829 7( 7) R-x(3)-W-x(2,3)-A-[FIL]-[ASV]-I-x(2)-[LV]-x-[LMV]-[AT]-[GL]-x(3)-[AGI]-x-[PS]-x(2)-[ST]-x(3)-[EGNT]-x(2)-[ADNPT]-[DGNT] Occurences: 7(7) CYBH_ALCEU : 38- 72: yeapv RlwhWvn-ALAIvvLaVTGffiGsPpaTrpgEasAN flmgy CYBH_AZOVI : 30- 64: yeapl RlwhWvt-ALSIvvLgVTGyfiGaPlpTmpgEamDN ylmgy CYBH_BRAJA : 39- 73: yeapv RichWvn-AFSIivLmVTGyliGtPlpTvagEasDN fvmgy CYBH_ECOLI : 185- 220: ihswh RlgmWligAFVIghVyMALredImSddTvisTmvNG yrshk CYBH_RHILV : 30- 64: yeapv RiwhWin-AFSIltLaLTGyfiGsPlpSvpgEasAN flmgy CYBH_RHOCA : 51- 85: yeapv RvwhWvn-ALAItiLvVTGyfiAsPlpSmqiGeaTD qfvmg CYBH_WOLSU : 22- 56: ftalt RwfhWir-AIAIfvLiVTGfyiAyPflTpikNsePT nfmya F 6: 41.4801 7( 7) L-x-[LV]-T-G-[FY]-x-I-[AG]-x-P-x-[ALP]-[ST]-x(3)-[EGN]-[AES] Occurences: 7(7) CYBH_ALCEU : 51- 69: laivv LaVTGFfIGsPpATrpgEA sanfl CYBH_AZOVI : 43- 61: lsivv LgVTGYfIGaPlPTmpgEA mdnyl CYBH_BRAJA : 52- 70: fsiiv LmVTGYlIGtPlPTvagEA sdnfv CYBH_ECOLI : 32- 50: lcmav LmVTGYfIGkPlPSvsgEA tylfy CYBH_RHILV : 43- 61: fsilt LaLTGYfIGsPlPSvpgEA sanfl CYBH_RHOCA : 64- 82: laiti LvVTGYfIAsPlPSmqiGE atdqf CYBH_WOLSU : 35- 53: iaifv LiVTGFyIAyPfLTpikNS eptnf G 7: 38.4125 7( 7) Y-x(2,3)-A-x(0,2)-R-x(2)-H-x-[ILV]-x-[AGV]-[FL]-[ACS]-[ILM]-x(2)-[LV]-x-[ILV]-x(4)-[IL] Occurences: 7(7) CYBH_ALCEU : 31- 58: sikat YvyeApvRlwHwVnALAIvvLaVtgffI gsppa CYBH_AZOVI : 23- 50: kqtav YvyeAplRlwHwVtALSIvvLgVtgyfI gaplp CYBH_BRAJA : 32- 59: grptv YvyeApvRicHwVnAFSIivLmVtgylI gtplp CYBH_ECOLI : 12- 39: nvvsh YvfeApvRiwHwLtVLCMavLmVtgyfI gkplp CYBH_RHILV : 23- 50: erqsv YvyeApvRiwHwInAFSIltLaLtgyfI gsplp CYBH_RHOCA : 44- 71: rrtsv YvyeApvRvwHwVnALAItiLvVtgyfI asplp CYBH_WOLSU : 60- 84: ptnfm Yal-A--RswHqIfGFALiaVtIfrvyL fifdk H 8: 36.2265 7( 7) M-x(0,1)-Y-x(1,3)-R-x(2)-H-x(3)-[AG]-x-[AILV]-[FLM]-x-[AIV]-x(2)-[FIL]-x-R-[IV] Occurences: 7(7) CYBH_ALCEU : 75- 97: sanfl MgYi--RfaHfvaAyIFaIgmLgRI ywata CYBH_AZOVI : 67- 89: mdnyl MgYi--RfaHfaaGyVLaIgfLgRV ywafv CYBH_BRAJA : 76- 98: sdnfv MgYi--RfaHfaaGqVLaVffLtRI lwafv CYBH_ECOLI : 56- 78: tylfy MgYi--RliHfsaGmVFtVvlLmRI ywafv CYBH_RHILV : 67- 89: sanfl MgYi--RfiHfaaGqLLaVflIlRV ywafv CYBH_RHOCA : 89- 111: tdqfv MgYi--RfaHfaaGvVMsVafFgRI ywafv CYBH_WOLSU : 59- 82: eptnf M-YalaRswHqifGfALiAvtIfRV ylfif I 9: 36.1655 7( 7) A-x(5)-M-[GV]-x-I-x-[FL]-[AI]-x-[FV]-[ASTV]-[AG]-[AGI]-x-[ILV] Occurences: 7(7) CYBH_ALCEU : 69- 88: trpge AsanflMGyIrFAhFVAAyI faigm CYBH_AZOVI : 61- 80: tmpge AmdnylMGyIrFAhFAAGyV laigf CYBH_BRAJA : 70- 89: tvage AsdnfvMGyIrFAhFAAGqV lavff CYBH_ECOLI : 50- 69: svsge AtylfyMGyIrLIhFSAGmV ftvvl CYBH_RHILV : 61- 80: svpge AsanflMGyIrFIhFAAGqL lavfl CYBH_RHOCA : 83- 102: mqige AtdqfvMGyIrFAhFAAGvV msvaf CYBH_WOLSU : 133- 152: npvql AaymglMVlIlLIsVTGIiL yynvy J 10: 34.1264 7( 7) T-G-[FY]-x-I-[AG]-x-P-x-[ALP]-[ST]-x(3)-[EGN]-[AES] Occurences: 7(7) CYBH_ALCEU : 54- 69: vvlav TGFfIGsPpATrpgEA sanfl CYBH_AZOVI : 46- 61: vvlgv TGYfIGaPlPTmpgEA mdnyl CYBH_BRAJA : 55- 70: ivlmv TGYlIGtPlPTvagEA sdnfv CYBH_ECOLI : 35- 50: avlmv TGYfIGkPlPSvsgEA tylfy CYBH_RHILV : 46- 61: ltlal TGYfIGsPlPSvpgEA sanfl CYBH_RHOCA : 67- 82: tilvv TGYfIAsPlPSmqiGE atdqf CYBH_WOLSU : 38- 53: fvliv TGFyIAyPfLTpikNS eptnf K 11: 30.9208 7( 7) M-x(3,4)-R-x(2)-H-x(0,2)-F-[AGSV]-x-[AG]-x-[ILV]-x-[ASTV]-x(2)-[FLM]-x(3)-[ILV] Occurences: 7(7) CYBH_ALCEU : 75- 97: sanfl Mgyi-RfaH--FVaAyIfAigMlgrI ywata CYBH_AZOVI : 67- 89: mdnyl Mgyi-RfaH--FAaGyVlAigFlgrV ywafv CYBH_BRAJA : 76- 98: sdnfv Mgyi-RfaH--FAaGqVlAvfFltrI lwafv CYBH_ECOLI : 56- 78: tylfy Mgyi-RliH--FSaGmVfTvvLlmrI ywafv CYBH_RHILV : 67- 89: sanfl Mgyi-RfiH--FAaGqLlAvfLilrV ywafv CYBH_RHOCA : 89- 111: tdqfv Mgyi-RfaH--FAaGvVmSvaFfgrI ywafv CYBH_WOLSU : 59- 84: eptnf MyalaRswHqiFGfAlIaVtiFrvyL fifdk L 12: 30.4208 7( 7) Y-x(1,3)-R-x(2)-H-x(0,2)-F-[AGSV]-x-[AG]-x-[ILV]-x-[ASTV]-x(2)-[FLM]-x(3)-[ILV] Occurences: 7(7) CYBH_ALCEU : 77- 97: nflmg Yi--RfaH--FVaAyIfAigMlgrI ywata CYBH_AZOVI : 69- 89: nylmg Yi--RfaH--FAaGyVlAigFlgrV ywafv CYBH_BRAJA : 78- 98: nfvmg Yi--RfaH--FAaGqVlAvfFltrI lwafv CYBH_ECOLI : 58- 78: lfymg Yi--RliH--FSaGmVfTvvLlmrI ywafv CYBH_RHILV : 69- 89: nflmg Yi--RfiH--FAaGqLlAvfLilrV ywafv CYBH_RHOCA : 91- 111: qfvmg Yi--RfaH--FAaGvVmSvaFfgrI ywafv CYBH_WOLSU : 60- 84: ptnfm YalaRswHqiFGfAlIaVtiFrvyL fifdk M 13: 29.9563 7( 7) G-[FY]-x-I-[AG]-x-P-x-[ALP]-[ST]-x(3)-[EGN]-[AES] Occurences: 7(7) CYBH_ALCEU : 55- 69: vlavt GFfIGsPpATrpgEA sanfl CYBH_AZOVI : 47- 61: vlgvt GYfIGaPlPTmpgEA mdnyl CYBH_BRAJA : 56- 70: vlmvt GYlIGtPlPTvagEA sdnfv CYBH_ECOLI : 36- 50: vlmvt GYfIGkPlPSvsgEA tylfy CYBH_RHILV : 47- 61: tlalt GYfIGsPlPSvpgEA sanfl CYBH_RHOCA : 68- 82: ilvvt GYfIAsPlPSmqiGE atdqf CYBH_WOLSU : 39- 53: vlivt GFyIAyPfLTpikNS eptnf N 14: 29.8501 7( 7) R-x(2)-H-x(0,2)-F-x(0,2)-A-[AGL]-x-[AILV]-[FLV]-x(4)-[FILV]-x(4)-[FWY]-x(3)-[CGV] Occurences: 7(7) CYBH_ALCEU : 79- 103: lmgyi RfaH--Fv-AAyIFaigmLgriyWataG nhhsr CYBH_AZOVI : 71- 95: lmgyi RfaH--Fa-AGyVLaigfLgrvyWafvG nhhar CYBH_BRAJA : 80- 104: vmgyi RfaH--Fa-AGqVLavffLtrilWafvG nhhsr CYBH_ECOLI : 60- 84: ymgyi RliH--Fs-AGmVFtvvlLmriyWafvG nrysr CYBH_RHILV : 71- 95: lmgyi RfiH--Fa-AGqLLavflIlrvyWafvG nvhar CYBH_RHOCA : 93- 116: vmgyi RfaH--F--AAgVVmsvaFfgriYwafV gnrha CYBH_WOLSU : 64- 91: myala RswHqiFgfALiAVtifrVylfiFdkgC rvera O 15: 24.1367 7( 7) G-x(2,3)-R-x-[AIL]-[EH]-F-x(0,1)-A-[AGL] Occurences: 7(7) CYBH_ALCEU : 76- 86: anflm Gyi-RfAHFvAA yifai CYBH_AZOVI : 68- 77: dnylm Gyi-RfAHF-AA gyvla CYBH_AZOVI : 68- 78: dnylm Gyi-RfAHFaAG yvlai CYBH_BRAJA : 77- 86: dnfvm Gyi-RfAHF-AA gqvla CYBH_BRAJA : 77- 87: dnfvm Gyi-RfAHFaAG qvlav CYBH_ECOLI : 57- 67: ylfym Gyi-RlIHFsAG mvftv CYBH_RHILV : 68- 77: anflm Gyi-RfIHF-AA gqlla CYBH_RHILV : 68- 78: anflm Gyi-RfIHFaAG qllav CYBH_RHOCA : 90- 99: dqfvm Gyi-RfAHF-AA gvvms CYBH_RHOCA : 90- 100: dqfvm Gyi-RfAHFaAG vvmsv CYBH_WOLSU : 9- 20: rante GtfeReLEFtAL trwfh P 16: 24.1094 7( 7) G-x(0,1)-Y-I-x(3,4)-F-x-[AT]-[AGP]-x(3)-[AST] Occurences: 7(7) CYBH_ALCEU : 76- 90: anflm G-YIrfahFvAAyifA igmlg CYBH_AZOVI : 68- 82: dnylm G-YIrfahFaAGyvlA igflg CYBH_BRAJA : 77- 91: dnfvm G-YIrfahFaAGqvlA vfflt CYBH_ECOLI : 57- 71: ylfym G-YIrlihFsAGmvfT vvllm CYBH_RHILV : 68- 82: anflm G-YIrfihFaAGqllA vflil CYBH_RHOCA : 90- 104: dqfvm G-YIrfahFaAGvvmS vaffg CYBH_WOLSU : 39- 53: vlivt GfYIayp-FlTPiknS eptnf Q 17: 21.5780 7( 7) A-x-V-x(3)-H-x(2)-[ENQT]-x(3)-[FIMV]-[AILPV]-[FIV] Occurences: 7(7) CYBH_ALCEU : 35- 50: tyvye ApVrlwHwvNalaIVV lavtg CYBH_AZOVI : 92- 107: grvyw AfVgnhHarElflVPV hrkaw CYBH_BRAJA : 36- 51: vyvye ApVricHwvNafsIIV lmvtg CYBH_ECOLI : 16- 31: hyvfe ApVriwHwlTvlcMAV lmvtg CYBH_RHILV : 92- 107: lrvyw AfVgnvHarQifyVPF wsgrf CYBH_RHOCA : 114- 129: griyw AfVgnrHawQmfyIPI fnkry CYBH_WOLSU : 180- 195: mfggl AnVraiHhiTtwaFVI fipvh R 18: 17.8803 8( 7) I-x(2,3)-L-x(1,2)-V-[APST]-G Occurences: 8(7) CYBH_ALCEU : 48- 55: vnala Ivv-La-VTG ffigs CYBH_AZOVI : 40- 47: vtals Ivv-Lg-VTG yfiga CYBH_BRAJA : 49- 56: vnafs Iiv-Lm-VTG yligt CYBH_BRAJA : 59- 68: vtgyl IgtpLptVAG easdn CYBH_ECOLI : 39- 48: vtgyf IgkpLpsVSG eatyl CYBH_RHILV : 50- 59: ltgyf IgspLpsVPG easan CYBH_RHOCA : 61- 68: vnala Iti-Lv-VTG yfias CYBH_WOLSU : 32- 39: iraia Ifv-Li-VTG fyiay S 19: 17.7655 7( 7) R-x(1,3)-A-x(0,1)-F-V-[AGL] Occurences: 7(7) CYBH_ALCEU : 79- 85: lmgyi Rf--AhFVA ayifa CYBH_AZOVI : 88- 95: igflg RvywA-FVG nhhar CYBH_BRAJA : 97- 104: vfflt RilwA-FVG nhhsr CYBH_ECOLI : 77- 84: vvllm RiywA-FVG nrysr CYBH_RHILV : 88- 95: vflil RvywA-FVG nvhar CYBH_RHOCA : 110- 117: vaffg RiywA-FVG nrhaw CYBH_WOLSU : 28- 35: wfhwi Rai-AiFVL ivtgf T 20: 17.3803 10( 7) I-x(1,3)-L-x(1,2)-V-[APST]-G Occurences: 10(7) CYBH_ALCEU : 48- 55: vnala Ivv-La-VTG ffigs CYBH_AZOVI : 40- 47: vtals Ivv-Lg-VTG yfiga CYBH_BRAJA : 49- 56: vnafs Iiv-Lm-VTG yligt CYBH_BRAJA : 50- 56: nafsi Iv--Lm-VTG yligt CYBH_BRAJA : 59- 68: vtgyl IgtpLptVAG easdn CYBH_ECOLI : 39- 48: vtgyf IgkpLpsVSG eatyl CYBH_RHILV : 50- 59: ltgyf IgspLpsVPG easan CYBH_RHOCA : 61- 68: vnala Iti-Lv-VTG yfias CYBH_WOLSU : 32- 39: iraia Ifv-Li-VTG fyiay CYBH_WOLSU : 142- 149: glmvl Il--LisVTG iilyy Number of patterns evaluated by Pratt:1790 Total running time: 1 seconds