------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 12 sequences from file NITRIL_CHT_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 12 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename NITRIL_CHT_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CYHY_FUSLA 357 CYHY_GLOSO 368 NRL1_ARATH 346 NRL1_RHORH 383 NRL2_ARATH 339 NRL2_RHORH 365 NRL3_ARATH 346 NRL4_ARATH 355 NRLA_ACISP 21 NRLA_ALCFA 356 NRLB_KLEPN 349 YIQ4_YEAST 199 Pratt run started at Thu Feb 6 20:25:07 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 12.0102 12( 12) V-x-A-x(1,2)-P 2: 12.0102 13( 12) V-x(1,2)-A-x-P 3: 11.5102 21( 12) A-x(1,2)-V-x(2,3)-E 4: 11.5102 16( 12) A-x(2,3)-A-x(3,4)-V 5: 11.5102 16( 12) L-A-x(0,2)-A 6: 11.5102 17( 12) L-x(0,1)-A-x(2,3)-A 7: 11.5102 19( 12) K-x(1,3)-A-A 8: 11.0102 15( 12) P-x(0,1)-V-x(3,5)-A 9: 11.0102 18( 12) A-x(2,4)-V-x(1,2)-A 10: 11.0102 18( 12) T-x(0,2)-V-x(2,3)-P 11: 11.0102 20( 12) A-x(2,3)-V-x(2,4)-P 12: 11.0102 26( 12) K-x(2,3)-A-x(0,2)-A 13: 11.0102 15( 12) S-x(1,2)-L-x(1,3)-V 14: 10.5102 26( 12) A-x(2,4)-V-x(3,5)-A 15: 10.5102 24( 12) N-x(3,5)-L-x(1,3)-A 16: 8.3401 35( 12) L-x-A 17: 8.3401 31( 12) V-x(2)-A 18: 8.3401 22( 12) P-V 19: 8.3401 36( 12) E-x(5)-A 20: 8.3401 31( 12) A-x-P Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 13.7153 14( 12) K-x(1,3)-A-A-x(3)-[AEGS] B 2: 12.0102 12( 12) V-x-A-x(1,2)-P C 3: 12.0102 13( 12) V-x(1,2)-A-x-P D 4: 11.5102 21( 12) A-x(1,2)-V-x(2,3)-E E 5: 11.5102 16( 12) A-x(2,3)-A-x(3,4)-V F 6: 11.5102 16( 12) L-A-x(0,2)-A G 7: 11.5102 17( 12) L-x(0,1)-A-x(2,3)-A H 8: 11.0102 15( 12) P-x(0,1)-V-x(3,5)-A I 9: 11.0102 18( 12) A-x(2,4)-V-x(1,2)-A J 10: 11.0102 18( 12) T-x(0,2)-V-x(2,3)-P K 11: 11.0102 20( 12) A-x(2,3)-V-x(2,4)-P L 12: 11.0102 26( 12) K-x(2,3)-A-x(0,2)-A M 13: 11.0102 15( 12) S-x(1,2)-L-x(1,3)-V N 14: 10.9436 13( 12) P-V-x(2)-[DST] O 15: 10.5102 26( 12) A-x(2,4)-V-x(3,5)-A P 16: 10.5102 24( 12) N-x(3,5)-L-x(1,3)-A Q 17: 8.3401 35( 12) L-x-A R 18: 8.3401 31( 12) V-x(2)-A S 19: 8.3401 36( 12) E-x(5)-A T 20: 8.3401 31( 12) A-x-P Best patterns with alignements: fitness hits(seqs) Pattern A 1: 13.7153 14( 12) K-x(1,3)-A-A-x(3)-[AEGS] Occurences: 14(12) CYHY_FUSLA : 5- 13: mait Kyk-AAavtS epgwf CYHY_FUSLA : 5- 14: mait KykaAAvtsE pgwfd CYHY_FUSLA : 7- 14: aitky Ka--AAvtsE pgwfd CYHY_GLOSO : 5- 13: mpin Kyk-AAvvtS epvwe NRL1_ARATH : 180- 188: dtpig Klg-AAicwE nrmpl NRL1_RHORH : 295- 302: qiila Ka--AAdpaG hysrp NRL2_ARATH : 173- 181: dtpig Klg-AAicwE nrmpl NRL2_RHORH : 288- 295: aitla Kq--AAdpvG hysrp NRL3_ARATH : 180- 188: dtpig Kig-AAicwE nrmpl NRL4_ARATH : 191- 199: dtpig Kig-AAicwE nrmps NRLA_ACISP : 6- 14: vsyns Kfl-AAtvqA epvvl NRLA_ALCFA : 5- 14: mqtr KivrAAavqA aspny NRLB_KLEPN : 6- 13: mdttf Ka--AAvqaE pvwmd NRLB_KLEPN : 72- 81: iikyr KqaiAAdgpE iekir YIQ4_YEAST : 3- 12: ma KhivAAlqiG scpgs B 2: 12.0102 12( 12) V-x-A-x(1,2)-P Occurences: 12(12) CYHY_FUSLA : 185- 189: geqvh VaAw-P vypgr CYHY_GLOSO : 184- 188: geqih VaAw-P vypdl NRL1_ARATH : 279- 283: splgq VlAg-P nfese NRL1_RHORH : 18- 22: vkvat VqAe-P vilda NRL2_ARATH : 272- 276: splgq VlAg-P nfese NRL2_RHORH : 12- 16: fkvaa VqAq-P vwfda NRL3_ARATH : 279- 283: splgk VlAg-P nyese NRL4_ARATH : 290- 294: splgi VlAg-P nyrge NRLA_ACISP : 12- 16: flaat VqAe-P vvlda NRLA_ALCFA : 12- 17: vraaa VqAasP nydla NRLB_KLEPN : 10- 14: fkaaa VqAe-P vwmda YIQ4_YEAST : 194- 198: wcapt VdAr-P i C 3: 12.0102 13( 12) V-x(1,2)-A-x-P Occurences: 13(12) CYHY_FUSLA : 185- 189: geqvh Va-AwP vypgr CYHY_GLOSO : 184- 188: geqih Va-AwP vypdl NRL1_ARATH : 10- 15: kdmst VqnAtP fngva NRL1_ARATH : 279- 283: splgq Vl-AgP nfese NRL1_RHORH : 18- 22: vkvat Vq-AeP vilda NRL2_ARATH : 272- 276: splgq Vl-AgP nfese NRL2_RHORH : 12- 16: fkvaa Vq-AqP vwfda NRL3_ARATH : 279- 283: splgk Vl-AgP nyese NRL4_ARATH : 290- 294: splgi Vl-AgP nyrge NRLA_ACISP : 12- 16: flaat Vq-AeP vvlda NRLA_ALCFA : 12- 17: vraaa VqaAsP nydla NRLB_KLEPN : 10- 14: fkaaa Vq-AeP vwmda YIQ4_YEAST : 194- 198: wcapt Vd-ArP i D 4: 11.5102 21( 12) A-x(1,2)-V-x(2,3)-E Occurences: 21(12) CYHY_FUSLA : 8- 14: itkyk AaaVts-E pgwfd CYHY_FUSLA : 9- 14: tkyka Aa-Vts-E pgwfd CYHY_GLOSO : 8- 14: inkyk AavVts-E pvwen CYHY_GLOSO : 8- 14: inkyk Aa-VvtsE pvwen CYHY_GLOSO : 9- 14: nkyka Av-Vts-E pvwen NRL1_ARATH : 58- 65: aaskg AelVlfpE gfigg NRL1_ARATH : 80- 86: frfgl AvgVhn-E egrde NRL1_ARATH : 80- 87: frfgl AvgVhneE grdef NRL1_ARATH : 99- 106: kyhas AihVpgpE varla NRL1_RHORH : 16- 21: gkvkv At-Vqa-E pvild NRL2_ARATH : 92- 99: kyhas AikVpgpE vekla NRL2_RHORH : 98- 105: rdhni AvvVgisE rdggs NRL3_ARATH : 58- 65: aaskg AklVlfpE afigg NRL3_ARATH : 80- 86: frfgl AvgVhn-E egrde NRL3_ARATH : 80- 87: frfgl AvgVhneE grdef NRL3_ARATH : 99- 106: nyhas AikVpgpE verla NRL4_ARATH : 110- 117: kyhas AidVpgpE verla NRLA_ACISP : 9- 15: nskfl AatVqa-E pvvld NRLA_ACISP : 10- 15: skfla At-Vqa-E pvvld NRLA_ALCFA : 223- 230: cftia AssVvtqE tldml NRLB_KLEPN : 7- 13: dttfk AaaVqa-E pvwmd NRLB_KLEPN : 8- 13: ttfka Aa-Vqa-E pvwmd NRLB_KLEPN : 38- 45: aaaag AqlVafpE lwipg YIQ4_YEAST : 37- 44: ikesg AklVvipE atlgg E 5: 11.5102 16( 12) A-x(2,3)-A-x(3,4)-V Occurences: 16(12) CYHY_FUSLA : 34- 42: dfine Age-AgckfV afpev CYHY_GLOSO : 206- 213: patny Adp-Asdl-V tpaya NRL1_ARATH : 111- 119: evarl Adv-ArknhV ylvmg NRL1_RHORH : 46- 54: aakng AeflAfpe-V wipgy NRL1_RHORH : 196- 204: vaswp Amf-AltpdV hqlsv NRL2_ARATH : 104- 112: evekl Ael-AgknnV ylvmg NRL2_RHORH : 64- 71: vdspl Agm-Akfa-V ryhen NRL2_RHORH : 287- 294: saitl Akq-Aadp-V ghysr NRL3_ARATH : 111- 119: everl Ael-AgknnV hlvmg NRL4_ARATH : 122- 130: everl Alm-AkkykV ylvmg NRLA_ACISP : 10- 18: skfla AtvqAepv-V lda NRLA_ALCFA : 284- 293: nmeei AfakAindpV ghysk NRLB_KLEPN : 19- 27: pvwmd AaatAdkt-V tlvak NRLB_KLEPN : 20- 27: vwmda Aat-Adkt-V tlvak NRLB_KLEPN : 33- 41: tlvak Aaa-AgaqlV afpel YIQ4_YEAST : 99- 106: calsk Atd-Aslc-V gcier F 6: 11.5102 16( 12) L-A-x(0,2)-A Occurences: 16(12) CYHY_FUSLA : 156- 158: svrlr LA--A sgqln CYHY_FUSLA : 295- 299: hltkv LAdfA ghymr CYHY_GLOSO : 174- 177: pflks LAv-A rgeqi CYHY_GLOSO : 294- 298: hltka LAdfA ghymr NRL1_ARATH : 110- 114: pevar LAdvA rknhv NRL1_RHORH : 96- 98: mrrlq LA--A rqnni NRL1_RHORH : 293- 296: leqii LAk-A aadpa NRL1_RHORH : 293- 297: leqii LAkaA adpag NRL2_ARATH : 103- 107: pevek LAelA gknnv NRL2_RHORH : 63- 67: wvdsp LAgmA kfavr NRL2_RHORH : 286- 290: lsait LAkqA adpvg NRL3_ARATH : 110- 114: pever LAelA gknnv NRL4_ARATH : 121- 125: pever LAlmA kkykv NRLA_ACISP : 8- 10: ynskf LA--A tvqae NRLA_ALCFA : 31- 35: dktie LArqA rdegc NRLB_KLEPN : 173- 175: lnkfa LA--A egeqi YIQ4_YEAST : 75- 78: eyaky LAe-A ieign G 7: 11.5102 17( 12) L-x(0,1)-A-x(2,3)-A Occurences: 17(12) CYHY_FUSLA : 295- 299: hltkv L-Adf-A ghymr CYHY_GLOSO : 267- 272: rpdgs LyAkp-A vdfdg CYHY_GLOSO : 294- 298: hltka L-Adf-A ghymr NRL1_ARATH : 110- 114: pevar L-Adv-A rknhv NRL1_RHORH : 293- 297: leqii L-Aka-A adpag NRL1_RHORH : 293- 298: leqii L-AkaaA dpagh NRL1_RHORH : 363- 369: aatlp LdApapA papeq NRL2_ARATH : 103- 107: pevek L-Ael-A gknnv NRL2_RHORH : 63- 67: wvdsp L-Agm-A kfavr NRL2_RHORH : 263- 268: pdgrd L-AtplA edeeg NRL2_RHORH : 281- 287: yadid LsAitlA kqaad NRL2_RHORH : 286- 290: lsait L-Akq-A adpvg NRL2_RHORH : 286- 291: lsait L-AkqaA dpvgh NRL3_ARATH : 110- 114: pever L-Ael-A gknnv NRL4_ARATH : 121- 125: pever L-Alm-A kkykv NRLA_ACISP : 8- 14: ynskf LaAtvqA epvvl NRLA_ALCFA : 31- 35: dktie L-Arq-A rdegc NRLB_KLEPN : 29- 34: dktvt LvAka-A aagaq NRLB_KLEPN : 29- 35: dktvt LvAkaaA agaql YIQ4_YEAST : 93- 99: peisq LcAlskA tdasl H 8: 11.0102 15( 12) P-x(0,1)-V-x(3,5)-A Occurences: 15(12) CYHY_FUSLA : 189- 196: hvaaw P-VypgrsA rftpt CYHY_FUSLA : 252- 259: epetd PsVyngh-A riyrp CYHY_GLOSO : 243- 251: krhtp PgVepetdA tpyng NRL1_ARATH : 105- 111: ihvpg PeVarl--A dvark NRL1_RHORH : 22- 27: tvqae P-Vild--A datid NRL1_RHORH : 22- 29: tvqae P-VildadA tidka NRL1_RHORH : 321- 327: trnht P-Vqyit-A dgrts NRL2_ARATH : 98- 104: ikvpg PeVekl--A elagk NRL2_RHORH : 16- 21: avqaq P-Vwfd--A aktvd NRL2_RHORH : 16- 22: avqaq P-Vwfda-A ktvdk NRL2_RHORH : 83- 91: ltmds PhVqrlldA ardhn NRL3_ARATH : 105- 111: ikvpg PeVerl--A elagk NRL4_ARATH : 116- 122: idvpg PeVerl--A lmakk NRLA_ACISP : 16- 21: tvqae P-Vvld--A NRLA_ALCFA : 330- 336: eeape PhVqst--A apvav NRLA_ALCFA : 330- 337: eeape PhVqsta-A pvavs NRLB_KLEPN : 14- 19: avqae P-Vwmd--A aatad NRLB_KLEPN : 14- 20: avqae P-Vwmda-A atadk NRLB_KLEPN : 14- 21: avqae P-VwmdaaA tadkt YIQ4_YEAST : 155- 160: dgstl P-Vvdt--A agkig YIQ4_YEAST : 155- 161: dgstl PvVdta--A gkigg YIQ4_YEAST : 155- 161: dgstl P-Vvdta-A gkigg I 9: 11.0102 18( 12) A-x(2,4)-V-x(1,2)-A Occurences: 18(12) CYHY_FUSLA : 179- 186: slnvs Ageq-VhvA awpvy CYHY_GLOSO : 209- 216: nyadp Asdl-VtpA yaiet NRL1_ARATH : 46- 53: atidk AekyiVe-A askga NRL1_ARATH : 46- 54: atidk AekyiVeaA skgae NRL1_RHORH : 63- 71: gypyw AwigdVkwA vsdfi NRL2_ARATH : 13- 20: pfngv AsstiVr-A tivqa NRL2_ARATH : 20- 25: stivr Ati--Vq-A stvyn NRL2_ARATH : 39- 46: atlek AnkfiVe-A askgs NRL2_ARATH : 39- 47: atlek AnkfiVeaA skgse NRL2_RHORH : 200- 205: qpevp Afg--Vd-A qltat NRL3_ARATH : 46- 53: atldk AekfiVe-A askga NRL3_ARATH : 46- 54: atldk AekfiVeaA skgak NRL4_ARATH : 38- 43: ssivr Atv--Vq-A stvfy NRLA_ACISP : 9- 14: nskfl Aat--Vq-A epvvl NRLA_ACISP : 14- 21: aatvq Aepv-VldA NRLA_ALCFA : 9- 14: rkivr Aaa--Vq-A aspny NRLA_ALCFA : 9- 15: rkivr Aaa--VqaA spnyd NRLA_ALCFA : 199- 207: seqah AlsakVnmA asqiy NRLB_KLEPN : 7- 12: dttfk Aaa--Vq-A epvwm NRLB_KLEPN : 201- 207: gdsig Ainq-Vy-A aetgt NRLB_KLEPN : 201- 208: gdsig Ainq-VyaA etgtf YIQ4_YEAST : 2- 8: m Akhi-Va-A lqigs YIQ4_YEAST : 191- 196: veiwc Apt--Vd-A rpi J 10: 11.0102 18( 12) T-x(0,2)-V-x(2,3)-P Occurences: 18(12) CYHY_FUSLA : 140- 144: lrssf T--Vmd-P vtpsc CYHY_GLOSO : 112- 118: atlyl Tq-VlisP lgdvi CYHY_GLOSO : 223- 228: aietg Tw-Vla-P fqris NRL1_ARATH : 170- 177: qgdgs TipVydtP igklg NRL1_ARATH : 322- 327: dvlhl T--VnehP rksvt NRL1_RHORH : 17- 22: kvkva T--VqaeP vilda NRL2_ARATH : 163- 170: qgdgs TipVydtP igklg NRL2_ARATH : 315- 320: dvlhl T--VnehP kkpvt NRL2_RHORH : 224- 230: tfvvc TtqVvt-P eahef NRL2_RHORH : 225- 230: fvvct Tq-Vvt-P eahef NRL3_ARATH : 170- 177: qgdgs TipVydtP igkig NRL3_ARATH : 322- 327: difnl T--VnehP kkpvt NRL4_ARATH : 181- 188: fgdgs TipVfdtP igkig NRLA_ACISP : 11- 16: kflaa T--VqaeP vvlda NRLA_ALCFA : 349- 355: tqdsd TllVqe-P s NRLB_KLEPN : 218- 223: fvlms Tq-Vvg-P tgiaa YIQ4_YEAST : 119- 125: ttlyc Tm-VyidP kdgyv YIQ4_YEAST : 193- 198: iwcap T--VdarP i K 11: 11.0102 20( 12) A-x(2,3)-V-x(2,4)-P Occurences: 20(12) CYHY_FUSLA : 8- 15: itkyk Aaa-Vtse-P gwfdl CYHY_FUSLA : 43- 50: gckfv AfpeVwi--P gypyw CYHY_GLOSO : 8- 15: inkyk Aav-Vtse-P vwenl CYHY_GLOSO : 43- 50: gckli AfpeVwi--P gypyw NRL1_ARATH : 58- 64: aaskg Ael-Vlf--P egfig NRL1_ARATH : 99- 105: kyhas Aih-Vpg--P evarl NRL1_RHORH : 50- 57: gaefl AfpeVwi--P gypyw NRL2_ARATH : 25- 33: ativq Ast-VyndtP atlek NRL2_ARATH : 92- 98: kyhas Aik-Vpg--P evekl NRL2_RHORH : 44- 51: gcelv AfpeVfi--P gypyh NRL3_ARATH : 58- 64: aaskg Akl-Vlf--P eafig NRL3_ARATH : 99- 105: nyhas Aik-Vpg--P everl NRL4_ARATH : 43- 51: atvvq Ast-VfydtP atldk NRL4_ARATH : 110- 116: kyhas Aid-Vpg--P everl NRLA_ACISP : 9- 16: nskfl Aat-Vqae-P vvlda NRLA_ALCFA : 9- 17: rkivr Aaa-VqaasP nydla NRLB_KLEPN : 7- 14: dttfk Aaa-Vqae-P vwmda NRLB_KLEPN : 38- 44: aaaag Aql-Vaf--P elwip YIQ4_YEAST : 37- 43: ikesg Akl-Vvi--P eatlg YIQ4_YEAST : 191- 198: veiwc Apt-Vdar-P i L 12: 11.0102 26( 12) K-x(2,3)-A-x(0,2)-A Occurences: 26(12) CYHY_FUSLA : 5- 9: mait Kyk-A--A avtse CYHY_FUSLA : 5- 10: mait KykaA--A vtsep CYHY_FUSLA : 5- 10: mait Kyk-Aa-A vtsep CYHY_FUSLA : 293- 299: echlt Kvl-AdfA ghymr CYHY_GLOSO : 5- 9: mpin Kyk-A--A vvtse CYHY_GLOSO : 172- 177: mnpfl Ksl-Av-A rgeqi CYHY_GLOSO : 292- 298: eshlt Kal-AdfA ghymr NRL1_ARATH : 94- 99: rdefr Kyh-As-A ihvpg NRL1_ARATH : 180- 184: dtpig Klg-A--A icwen NRL1_RHORH : 295- 301: qiila Kaa-AdpA ghysr NRL1_RHORH : 352- 358: ladie KyenAe-A atlpl NRL1_RHORH : 352- 359: ladie KyenAeaA tlpld NRL1_RHORH : 375- 381: papeq KsgrAk-A ea NRL2_ARATH : 87- 92: rdefr Kyh-As-A ikvpg NRL2_ARATH : 173- 177: dtpig Klg-A--A icwen NRL2_RHORH : 8- 14: ytntf Kva-AvqA qpvwf NRL3_ARATH : 180- 184: dtpig Kig-A--A icwen NRL4_ARATH : 105- 110: rddfr Kyh-As-A idvpg NRL4_ARATH : 191- 195: dtpig Kig-A--A icwen NRLA_ACISP : 6- 10: vsyns Kfl-A--A tvqae NRLA_ALCFA : 5- 10: mqtr KivrA--A avqaa NRLA_ALCFA : 5- 11: mqtr KivrAa-A vqaas NRLA_ALCFA : 203- 208: halsa KvnmA--A sqiys NRLB_KLEPN : 6- 12: mdttf Kaa-AvqA epvwm NRLB_KLEPN : 32- 36: vtlva Kaa-A--A gaqlv NRLB_KLEPN : 32- 38: vtlva KaaaAg-A qlvaf NRLB_KLEPN : 32- 38: vtlva Kaa-AagA qlvaf NRLB_KLEPN : 72- 77: iikyr KqaiA--A dgpei NRLB_KLEPN : 84- 89: gpeie KircA--A qehni NRLB_KLEPN : 170- 175: lqsln KfalA--A egeqi YIQ4_YEAST : 3- 8: ma KhivA--A lqigs YIQ4_YEAST : 73- 78: reeya Kyl-Ae-A ieign M 13: 11.0102 15( 12) S-x(1,2)-L-x(1,3)-V Occurences: 15(12) CYHY_FUSLA : 148- 152: dpvtp Sc-Ls--V rlrla CYHY_GLOSO : 117- 122: tqvli Sp-Lgd-V inhrr NRL1_ARATH : 274- 279: gsvii Sp-Lgq-V lagpn NRL1_RHORH : 116- 122: ekdga SryLsq-V fidqn NRL2_ARATH : 51- 55: aaskg Se-Lv--V fpeaf NRL2_ARATH : 267- 272: gsvii Sp-Lgq-V lagpn NRL2_RHORH : 332- 338: tlvpq SgaLdg-V relng NRL3_ARATH : 274- 279: gsvii Sp-Lgk-V lagpn NRL4_ARATH : 69- 73: aaeng Sq-Lv--V fpeaf NRL4_ARATH : 285- 290: gssii Sp-Lgi-V lagpn NRLA_ACISP : 5- 12: vsyn SkfLaatV qaepv NRLA_ALCFA : 243- 247: gehna Sl-Lk--V gggss NRLA_ALCFA : 347- 352: sqtqd SdtLl--V qeps NRLB_KLEPN : 144- 148: gegdg Sd-Lq--V aqtsv YIQ4_YEAST : 152- 156: gqgdg St-Lp--V vdtaa YIQ4_YEAST : 152- 157: gqgdg St-Lpv-V dtaag N 14: 10.9436 13( 12) P-V-x(2)-[DST] Occurences: 13(12) CYHY_FUSLA : 144- 148: ftvmd PVtpS clsvr CYHY_GLOSO : 149- 153: gdsfe PVtqT eigrl CYHY_GLOSO : 188- 192: hvaaw PVypD lskqv NRL1_ARATH : 172- 176: dgsti PVydT pigkl NRL1_RHORH : 22- 26: tvqae PVilD adati NRL2_ARATH : 165- 169: dgsti PVydT pigkl NRL2_RHORH : 16- 20: avqaq PVwfD aaktv NRL3_ARATH : 172- 176: dgsti PVydT pigki NRL4_ARATH : 183- 187: dgsti PVfdT pigki NRLA_ACISP : 16- 20: tvqae PVvlD a NRLA_ALCFA : 338- 342: qstaa PVavS qtqds NRLB_KLEPN : 14- 18: avqae PVwmD aaata YIQ4_YEAST : 155- 159: dgstl PVvdT aagki O 15: 10.5102 26( 12) A-x(2,4)-V-x(3,5)-A Occurences: 26(12) CYHY_FUSLA : 179- 187: slnvs Ageq-Vhva--A wpvyp CYHY_FUSLA : 186- 196: eqvhv Aawp-VypgrsA rftpt CYHY_FUSLA : 187- 196: qvhva Awp--VypgrsA rftpt CYHY_GLOSO : 209- 218: nyadp Asdl-Vtpay-A ietgt NRL1_ARATH : 97- 108: frkyh AsaihVpgpevA rladv NRL1_ARATH : 99- 108: kyhas Aih--VpgpevA rladv NRL1_ARATH : 114- 125: rladv ArknhVylvmgA iekeg NRL1_RHORH : 20- 27: vatvq Aep--Vild--A datid NRL1_RHORH : 20- 29: vatvq Aep--VildadA tidka NRL1_RHORH : 211- 220: qlsve Andt-Vtrsy-A iegqt NRL1_RHORH : 229- 237: qtfvl Asth-Vigk--A tqdlf NRL2_ARATH : 25- 34: ativq Ast--VyndtpA tleka NRL2_ARATH : 107- 118: klael AgknnVylvmgA iekdg NRL2_RHORH : 14- 21: vaavq Aqp--Vwfd--A aktvd NRL2_RHORH : 14- 22: vaavq Aqp--Vwfda-A ktvdk NRL2_RHORH : 200- 209: qpevp Afg--VdaqltA trmya NRL2_RHORH : 324- 334: istih AthtlVpqsg-A ldgvr NRL2_RHORH : 334- 344: vpqsg Aldg-VrelngA deqra NRL3_ARATH : 58- 66: aaskg Akl--Vlfpe-A figgy NRL3_ARATH : 114- 125: rlael AgknnVhlvmgA iekdg NRL4_ARATH : 43- 52: atvvq Ast--VfydtpA tldka NRLA_ACISP : 14- 21: aatvq Aep--Vvld--A NRLA_ALCFA : 199- 208: seqah AlsakVnma--A sqiys NRLA_ALCFA : 327- 336: viqee ApephVqst--A apvav NRLA_ALCFA : 327- 337: viqee ApephVqsta-A pvavs NRLB_KLEPN : 12- 19: aaavq Aep--Vwmd--A aatad NRLB_KLEPN : 12- 20: aaavq Aep--Vwmda-A atadk NRLB_KLEPN : 12- 21: aaavq Aep--VwmdaaA tadkt NRLB_KLEPN : 23- 31: daaat Adkt-Vtlv--A kaaaa NRLB_KLEPN : 23- 33: daaat Adkt-VtlvakA aaaga NRLB_KLEPN : 149- 158: sdlqv Aqts-Vgrvg-A lncae YIQ4_YEAST : 37- 45: ikesg Aklv-Vipe--A tlggy YIQ4_YEAST : 37- 45: ikesg Akl--Vvipe-A tlggy P 16: 10.5102 24( 12) N-x(3,5)-L-x(1,3)-A Occurences: 24(12) CYHY_FUSLA : 169- 179: cwenm NpflksLnvsA geqvh CYHY_GLOSO : 166- 175: lncwe Nmnpf-LkslA varge CYHY_GLOSO : 168- 177: cwenm NpflksLav-A rgeqi CYHY_GLOSO : 286- 293: vdidl Nesh--Ltk-A ladfa NRL1_ARATH : 117- 125: dvark Nhvy--LvmgA iekeg NRL1_ARATH : 189- 197: aicwe Nrmp--LyrtA lyakg NRL1_ARATH : 284- 293: vlagp NfesegLvt-A didlg NRL1_RHORH : 355- 365: iekye NaeaatLpldA papap NRL2_ARATH : 30- 39: astvy NdtpatLek-A nkfiv NRL2_ARATH : 110- 118: elagk Nnvy--LvmgA iekdg NRL2_ARATH : 182- 190: aicwe Nrmp--LyrtA lyakg NRL2_ARATH : 277- 286: vlagp NfesegLit-A dldlg NRL2_RHORH : 38- 44: aeaar Ngce--Lv--A fpevf NRL3_ARATH : 37- 46: sstvy NdtpatLdk-A ekfiv NRL3_ARATH : 117- 125: elagk Nnvh--LvmgA iekdg NRL3_ARATH : 189- 197: aicwe Nrmp--LyrtA lyakg NRL3_ARATH : 284- 293: vlagp NyesegLvt-A dldlg NRL4_ARATH : 200- 208: aicwe Nrmps-Lrt-A myakg NRL4_ARATH : 295- 304: vlagp NyrgeaLit-A dldlg NRLA_ACISP : 4- 10: vsy Nskf--La--A tvqae NRLA_ALCFA : 75- 82: aryya Nsls--Lds-A efqri NRLB_KLEPN : 164- 172: lncae Nlqs--LnkfA laaeg NRLB_KLEPN : 169- 175: nlqsl Nkfa--La--A egeqi YIQ4_YEAST : 172- 180: aicwe Nmmpl-Lry-A mykkg YIQ4_YEAST : 172- 180: aicwe Nmmp--LlryA mykkg Q 17: 8.3401 35( 12) L-x-A Occurences: 35(12) CYHY_FUSLA : 156- 158: svrlr LaA sgqln CYHY_GLOSO : 41- 43: kagck LiA fpevw CYHY_GLOSO : 68- 70: qslpm LkA yrens CYHY_GLOSO : 267- 269: rpdgs LyA kpavd NRL1_ARATH : 181- 183: tpigk LgA aicwe NRL1_ARATH : 198- 200: lyrta LyA kgiel NRL1_ARATH : 233- 235: ggcfv LsA cqfcq NRL1_RHORH : 25- 27: aepvi LdA datid NRL1_RHORH : 96- 98: mrrlq LaA rqnni NRL1_RHORH : 241- 243: katqd LfA gddda NRL1_RHORH : 282- 284: daegl LyA eldle NRL1_RHORH : 363- 365: aatlp LdA papap NRL2_ARATH : 174- 176: tpigk LgA aicwe NRL2_ARATH : 191- 193: lyrta LyA kgiel NRL2_ARATH : 226- 228: ggcfv LsA cqfcl NRL2_RHORH : 42- 44: rngce LvA fpevf NRL2_RHORH : 89- 91: hvqrl LdA ardhn NRL2_RHORH : 124- 126: dadgq LvA rrrkl NRL2_RHORH : 159- 161: mpfar LgA lncwe NRL2_RHORH : 207- 209: gvdaq LtA trmya NRL2_RHORH : 275- 277: deegi LyA didls NRL2_RHORH : 281- 283: yadid LsA itlak NRL3_ARATH : 198- 200: lyrta LyA kgiei NRL3_ARATH : 233- 235: ggcfv LsA hqfck NRL4_ARATH : 123- 125: verla LmA kkykv NRL4_ARATH : 244- 246: ggcfv LsA nqfcr NRLA_ACISP : 8- 10: ynskf LaA tvqae NRLA_ACISP : 19- 21: aepvv LdA NRLA_ALCFA : 59- 61: pfhvw LgA pawsl NRLA_ALCFA : 200- 202: eqaha LsA kvnma NRLB_KLEPN : 29- 31: dktvt LvA kaaaa NRLB_KLEPN : 40- 42: aagaq LvA fpelw NRLB_KLEPN : 173- 175: lnkfa LaA egeqi NRLB_KLEPN : 277- 279: idlsm LeA akysl YIQ4_YEAST : 93- 95: peisq LcA lskat R 18: 8.3401 31( 12) V-x(2)-A Occurences: 31(12) CYHY_FUSLA : 183- 186: sageq VhvA awpvy CYHY_GLOSO : 213- 216: pasdl VtpA yaiet NRL1_ARATH : 10- 13: kdmst VqnA tpfng NRL1_ARATH : 51- 54: aekyi VeaA skgae NRL1_ARATH : 122- 125: nhvyl VmgA iekeg NRL1_ARATH : 232- 235: eggcf VlsA cqfcq NRL1_ARATH : 337- 340: tfvtk VekA eddsn NRL1_RHORH : 13- 16: kytgk VkvA tvqae NRL1_RHORH : 68- 71: awigd VkwA vsdfi NRL2_ARATH : 44- 47: ankfi VeaA skgse NRL2_ARATH : 115- 118: nnvyl VmgA iekdg NRL2_ARATH : 225- 228: eggcf VlsA cqfcl NRL2_ARATH : 293- 296: ldlgd VarA klyfd NRL2_ARATH : 330- 333: tfisk VekA eddsn NRL2_RHORH : 117- 120: ymtql VidA dgqlv NRL2_RHORH : 183- 186: smheq VhvA swpgm NRL2_RHORH : 315- 318: rhttp VntA istih NRL3_ARATH : 51- 54: aekfi VeaA skgak NRL3_ARATH : 122- 125: nnvhl VmgA iekdg NRL3_ARATH : 232- 235: eggcf VlsA hqfck NRL3_ARATH : 337- 340: tfmtk VekA edesn NRL4_ARATH : 40- 43: ivrat VvqA stvfy NRL4_ARATH : 243- 246: eggcf VlsA nqfcr NRL4_ARATH : 275- 278: ltpds VvcA ggssi NRLA_ACISP : 18- 21: qaepv VldA NRLA_ALCFA : 7- 10: qtrki VraA avqaa NRLA_ALCFA : 12- 15: vraaa VqaA spnyd NRLA_ALCFA : 204- 207: alsak VnmA asqiy NRLB_KLEPN : 30- 33: ktvtl VakA aaaga NRLB_KLEPN : 205- 208: gainq VyaA etgtf YIQ4_YEAST : 157- 160: stlpv VdtA agkig S 19: 8.3401 36( 12) E-x(5)-A Occurences: 36(12) CYHY_FUSLA : 181- 187: nvsag EqvhvaA wpvyp CYHY_GLOSO : 82- 88: amdss EmrrirA aardn CYHY_GLOSO : 180- 186: avarg EqihvaA wpvyp CYHY_GLOSO : 287- 293: didln EshltkA ladfa NRL1_ARATH : 47- 53: tidka EkyiveA askga NRL1_ARATH : 52- 58: ekyiv EaaskgA elvlf NRL1_ARATH : 91- 97: eegrd EfrkyhA saihv NRL1_RHORH : 21- 27: atvqa EpvildA datid NRL1_RHORH : 40- 46: igfie EaakngA eflaf NRL1_RHORH : 272- 278: gksla EplpedA eglly NRL1_RHORH : 373- 379: papap EqksgrA kaea NRL2_ARATH : 84- 90: eegrd EfrkyhA saikv NRL2_ARATH : 101- 107: pgpev EklaelA gknnv NRL2_RHORH : 271- 277: plaed EegilyA didls NRL2_RHORH : 357- 363: sthsd EtdratA si NRL3_ARATH : 47- 53: tldka EkfiveA askga NRL3_ARATH : 52- 58: ekfiv EaaskgA klvlf NRL3_ARATH : 91- 97: eegrd EfrnyhA saikv NRL3_ARATH : 108- 114: pgpev ErlaelA gknnv NRL4_ARATH : 6- 12: msmqq EtshmtA apqtn NRL4_ARATH : 58- 64: tldka ErllseA aengs NRL4_ARATH : 119- 125: pgpev ErlalmA kkykv NRLA_ACISP : 15- 21: atvqa EpvvldA NRLA_ALCFA : 154- 160: ivsdt ElgrvgA lccwe NRLA_ALCFA : 180- 186: lysqh EaihiaA wpsfs NRLA_ALCFA : 236- 242: tldml EvgehnA sllkv NRLA_ALCFA : 282- 288: dlnme EiafakA indpv NRLB_KLEPN : 13- 19: aavqa EpvwmdA aatad NRLB_KLEPN : 83- 89: dgpei EkircaA qehni NRLB_KLEPN : 178- 184: laaeg EqihisA wpftl NRLB_KLEPN : 264- 270: slspt EegivyA eidls NRLB_KLEPN : 332- 338: degdr EvvistA igvlp YIQ4_YEAST : 31- 37: lsyek EikesgA klvvi YIQ4_YEAST : 66- 72: gyrlq EgreeyA kylae YIQ4_YEAST : 70- 76: qegre EyakylA eaiei YIQ4_YEAST : 89- 95: gekyp EisqlcA lskat T 20: 8.3401 31( 12) A-x-P Occurences: 31(12) CYHY_FUSLA : 43- 45: gckfv AfP evwip CYHY_FUSLA : 187- 189: qvhva AwP vypgr CYHY_FUSLA : 323- 325: klite AdP ngsia CYHY_GLOSO : 43- 45: gckli AfP evwip CYHY_GLOSO : 186- 188: qihva AwP vypdl CYHY_GLOSO : 206- 208: patny AdP asdlv CYHY_GLOSO : 251- 253: epetd AtP yngha CYHY_GLOSO : 269- 271: dgsly AkP avdfd NRL1_ARATH : 13- 15: stvqn AtP fngva NRL1_ARATH : 281- 283: lgqvl AgP nfese NRL1_RHORH : 20- 22: vatvq AeP vilda NRL1_RHORH : 50- 52: gaefl AfP evwip NRL1_RHORH : 271- 273: dgksl AeP lpeda NRL1_RHORH : 298- 300: lakaa AdP aghys NRL2_ARATH : 274- 276: lgqvl AgP nfese NRL2_RHORH : 14- 16: vaavq AqP vwfda NRL2_RHORH : 44- 46: gcelv AfP evfip NRL2_RHORH : 264- 266: dgrdl AtP laede NRL2_RHORH : 291- 293: lakqa AdP vghys NRL2_RHORH : 349- 351: adeqr AlP sthsd NRL3_ARATH : 281- 283: lgkvl AgP nyese NRL4_ARATH : 12- 14: tshmt AaP qtngh NRL4_ARATH : 292- 294: lgivl AgP nyrge NRLA_ACISP : 14- 16: aatvq AeP vvlda NRLA_ALCFA : 15- 17: aavqa AsP nydla NRLA_ALCFA : 186- 188: aihia AwP sfsly NRLA_ALCFA : 336- 338: hvqst AaP vavsq NRLB_KLEPN : 12- 14: aaavq AeP vwmda NRLB_KLEPN : 42- 44: gaqlv AfP elwip NRLB_KLEPN : 184- 186: qihis AwP ftlgs YIQ4_YEAST : 196- 198: aptvd ArP i Number of patterns evaluated by Pratt:245 Total running time: 0 seconds