------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 14 sequences from file NIR_SIR PATTERN CONSERVATION: CM: min Nr of Seqs to Match 14 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename NIR_SIR.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: ASRC_SALTY 337 COBG_PSEDE 459 CYSI_ECOLI 569 CYSI_SALTY 569 NIRB_ECOLI 847 NIRB_KLEPN 957 NIR_BETVE 583 NIR_EMENI 1104 NIR_MAIZE 569 NIR_NEUCR 1176 NIR_SPIOL 594 NIR_SYNP7 512 SIR_DESVH 218 SIR_SYNP7 624 Pratt run started at Thu Feb 6 20:24:58 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 12.0102 24( 14) G-x(5)-G-x(3,4)-A 2: 12.0102 19( 14) G-x(3,4)-G-x(4)-V 3: 12.0102 25( 14) L-x(2)-V-x(0,1)-G 4: 12.0102 24( 14) G-C-x(2,3)-C 5: 12.0102 16( 14) G-x(0,1)-C-x(3)-C 6: 12.0102 26( 14) L-x-L-x(1,2)-G 7: 12.0102 23( 14) L-x(4)-G-x(3,4)-E 8: 11.5102 17( 14) R-Q-x(3,5)-G 9: 11.5102 20( 14) E-A-x(2,4)-A 10: 11.5102 27( 14) E-x(0,1)-A-x(2,3)-A 11: 11.5102 26( 14) G-x(4,5)-R-x(1,2)-A 12: 11.5102 27( 14) G-x(3,4)-R-x(2,3)-L 13: 11.5102 25( 14) L-x(0,1)-R-x(4,5)-V 14: 11.5102 21( 14) R-L-x(0,2)-R 15: 11.5102 18( 14) G-x(2)-R-x(2,4)-E 16: 11.5102 23( 14) T-x(0,2)-A-x(2)-L 17: 11.5102 21( 14) L-x(0,1)-T-x(3,4)-G 18: 11.5102 33( 14) L-x(3,4)-E-x(3,4)-L 19: 11.5102 35( 14) L-x(2,3)-E-x(3,4)-L 20: 11.5102 31( 14) L-x(2,3)-E-x(2,3)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 35.7625 14( 14) G-C-[APTV]-x(2)-C-[AGS]-x-[APTV]-x(3)-[DE]-[FILV]-[AGT]-[FILV]-[IMV]-[AG] B 2: 14.6035 15( 14) G-C-x(2,3)-C-[AGS] C 3: 14.0998 17( 14) L-x(2,3)-E-x(2,3)-L-x-[DER] D 4: 13.6400 18( 14) L-x-L-x(1,2)-G-x(4)-[ADEGST] E 5: 13.6399 16( 14) G-x(3,4)-G-x(4)-V-x(4)-[AGNSTV] F 6: 13.1387 17( 14) L-x(0,1)-R-x(4,5)-V-x(2)-[ADGPST] G 7: 12.0102 24( 14) G-x(5)-G-x(3,4)-A H 8: 12.0102 25( 14) L-x(2)-V-x(0,1)-G I 9: 12.0102 23( 14) L-x(4)-G-x(3,4)-E J 10: 11.5102 17( 14) R-Q-x(3,5)-G K 11: 11.5102 20( 14) E-A-x(2,4)-A L 12: 11.5102 27( 14) E-x(0,1)-A-x(2,3)-A M 13: 11.5102 26( 14) G-x(4,5)-R-x(1,2)-A N 14: 11.5102 27( 14) G-x(3,4)-R-x(2,3)-L O 15: 11.5102 21( 14) R-L-x(0,2)-R P 16: 11.5102 18( 14) G-x(2)-R-x(2,4)-E Q 17: 11.5102 23( 14) T-x(0,2)-A-x(2)-L R 18: 11.5102 21( 14) L-x(0,1)-T-x(3,4)-G S 19: 11.5102 33( 14) L-x(3,4)-E-x(3,4)-L T 20: 11.5102 35( 14) L-x(2,3)-E-x(3,4)-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 35.7625 14( 14) G-C-[APTV]-x(2)-C-[AGS]-x-[APTV]-x(3)-[DE]-[FILV]-[AGT]-[FILV]-[IMV]-[AG] Occurences: 14(14) ASRC_SALTY : 152- 169: ktviv GCPndCAkAsmaDLGIIG vakmr COBG_PSEDE : 376- 393: tvhls GCAkgCArPkpsELTLVG apsgy CYSI_ECOLI : 477- 494: vmrvt GCPngCGrAmlaEVGLVG kapgr CYSI_SALTY : 477- 494: vmrvt GCPngCGrAmlaEIGLVG kapgr NIRB_ECOLI : 680- 697: kfgvs GCTreCSeAqgkDVGIIA tekgw NIRB_KLEPN : 678- 695: kmavs GCTreCAeAqgkDIGVIA tekgw NIR_BETVE : 501- 518: rmhwt GCPnsCGqVqvaDIGFMG cmard NIR_EMENI : 759- 776: kgavs GCVreCAeAqnkDFGLIA tekgf NIR_MAIZE : 487- 504: rmhwt GCPnsCGqVqvaDIGFMG cltkd NIR_NEUCR : 756- 773: kggvs GCTreCAeAgnkDFGLIA tekgf NIR_SPIOL : 513- 530: rmhwt GCPnsCGqVqvaDIGFMG cmtrd NIR_SYNP7 : 436- 453: rihwt GCPnsCGqPqvaDIGLMG akvrk SIR_DESVH : 130- 147: kfgis GCPfcCGeTylrDVGLVG tkkgw SIR_SYNP7 : 490- 507: vvrmt GCPngCArPymaELAFVG sapnt B 2: 14.6035 15( 14) G-C-x(2,3)-C-[AGS] Occurences: 15(14) ASRC_SALTY : 152- 158: ktviv GCpndCA kasma COBG_PSEDE : 376- 382: tvhls GCakgCA rpkps CYSI_ECOLI : 477- 483: vmrvt GCpngCG ramla CYSI_SALTY : 477- 483: vmrvt GCpngCG ramla NIRB_ECOLI : 680- 686: kfgvs GCtreCS eaqgk NIRB_KLEPN : 456- 461: tkaat GCgg-CS alvkq NIRB_KLEPN : 678- 684: kmavs GCtreCA eaqgk NIR_BETVE : 501- 507: rmhwt GCpnsCG qvqva NIR_EMENI : 759- 765: kgavs GCvreCA eaqnk NIR_MAIZE : 487- 493: rmhwt GCpnsCG qvqva NIR_NEUCR : 756- 762: kggvs GCtreCA eagnk NIR_SPIOL : 513- 519: rmhwt GCpnsCG qvqva NIR_SYNP7 : 436- 442: rihwt GCpnsCG qpqva SIR_DESVH : 130- 136: kfgis GCpfcCG etylr SIR_SYNP7 : 490- 496: vvrmt GCpngCA rpyma C 3: 14.0998 17( 14) L-x(2,3)-E-x(2,3)-L-x-[DER] Occurences: 17(14) ASRC_SALTY : 85- 94: alepf LreiEie-LcD vqved COBG_PSEDE : 226- 236: mrgrd LdpsEiraLcR cetss CYSI_ECOLI : 8- 16: khpgp Lvv-Egk-LtD aermk CYSI_SALTY : 8- 16: khpgp Lvv-Egk-LsD aermk NIRB_ECOLI : 541- 550: wneyi Lkp-EhtpLqD sndnf NIRB_ECOLI : 779- 788: glnah Lee-EmarLrE avlce NIRB_KLEPN : 275- 284: sdpdv LaigEca-LwE nkiyg NIR_BETVE : 437- 445: sklea Llg-Epl-LkD rfspe NIR_EMENI : 619- 629: lfnph LmdkEyheLqE tndrf NIR_MAIZE : 422- 430: erlda Lla-Epl-LqE qrlsp NIR_NEUCR : 510- 520: dlvap LksgEctsLgD lksct NIR_SPIOL : 408- 418: ipvgr LqadEmeeLaR iadvy NIR_SPIOL : 449- 457: skids Lln-Epl-LkE ryspe NIR_SYNP7 : 373- 381: aqlpt Lla-Epl-LtR fspqp NIR_SYNP7 : 420- 428: aiaqs Lea-Eld-LpR pvrih SIR_DESVH : 174- 184: vlaee LstdEakgLiR kfmef SIR_SYNP7 : 473- 481: vrirr Lle-Eqg-LpD ehfvv D 4: 13.6400 18( 14) L-x-L-x(1,2)-G-x(4)-[ADEGST] Occurences: 18(14) ASRC_SALTY : 198- 208: havgc LaLknGkavkE esaci COBG_PSEDE : 79- 88: targn LqLr-GlsaaS vprla COBG_PSEDE : 183- 192: gvawv LsLg-GtstkA ssvgt CYSI_ECOLI : 502- 511: pgryn LhLg-GnrigT riprm CYSI_SALTY : 502- 511: pgryn LhLg-GnrigS riprm NIRB_ECOLI : 323- 332: dlsak LkLl-GvdvgG igdah NIRB_KLEPN : 6- 15: mtkpv LvLv-GhgmvG hhfle NIRB_KLEPN : 321- 330: dmstk LkLl-GvdvaS fgdaq NIR_BETVE : 130- 140: rfmmr LkLpnGvttsA qtryl NIR_EMENI : 375- 384: dlstk LkLl-GvdvaS fgdff NIR_MAIZE : 115- 125: rfmmr LkLpnGvttsE qtryl NIR_NEUCR : 231- 240: geaga LvLe-GvrglG vevlt NIR_NEUCR : 376- 385: dlstk LkLl-GvevaS fgdff NIR_SPIOL : 142- 152: rfmmr LkLpnGvttsE qtryl NIR_SYNP7 : 105- 114: ttrqn LqLr-GllleD tpefl SIR_DESVH : 56- 65: tsgqr LaLv-GmkkeA vepmw SIR_SYNP7 : 181- 190: gayye LwLd-GekvlS gepdp SIR_SYNP7 : 515- 524: pntyq LwLg-GspdqT rlarp E 5: 13.6399 16( 14) G-x(3,4)-G-x(4)-V-x(4)-[AGNSTV] Occurences: 16(14) ASRC_SALTY : 103- 118: edtka GylaiGgrniVacqgN ricqk COBG_PSEDE : 393- 407: eltlv Gaps-GyglvVngaaN glpsa CYSI_ECOLI : 243- 257: aiaen Gklv-GfnllVggglS iehgn CYSI_SALTY : 243- 257: aiaen Gklv-GfnllVggglS iehgn NIRB_ECOLI : 338- 352: igdah Grtp-GarsyVyldeS keiyk NIRB_ECOLI : 456- 471: aetka GtgcgGciplVtqvlN aelak NIRB_KLEPN : 921- 936: irlrd GrqcdGgeqaVrawpV kveng NIR_BETVE : 383- 398: pqkqe GlsyvGlhipVgrvqA ddmde NIR_EMENI : 532- 547: sctka GtgcgGcmplVqsifN ktmld NIR_MAIZE : 368- 383: pqkqe GlsyvGlhvpVgrlqA admfe NIR_NEUCR : 528- 543: sctka GtgcgGcmplVtsifN rtmas NIR_SPIOL : 395- 410: pqkqq GlsfvGlhipVgrlqA demee NIR_SPIOL : 538- 553: trden GkpceGadvfVggriG sdshl NIR_SYNP7 : 319- 334: pqkqa GlnfvGlhvpVgrltT edlye SIR_DESVH : 147- 161: dvglv Gtkk-GwtliVggnsG ghpri SIR_SYNP7 : 254- 268: igndr Gele-GfnvyVgggmG rthnk F 6: 13.1387 17( 14) L-x(0,1)-R-x(4,5)-V-x(2)-[ADGPST] Occurences: 17(14) ASRC_SALTY : 131- 142: tdttg LsRrleklVypS pyhlk ASRC_SALTY : 297- 306: dkggy L-Rfker-VlrG vqlnp COBG_PSEDE : 444- 455: saqsc LtRlgaarVsaA feqg CYSI_ECOLI : 211- 222: lgqty LpRkfkttVviP pqndi CYSI_SALTY : 211- 222: lgqty LpRkfkttVviP pqndi NIRB_ECOLI : 635- 645: ayaka L-RmaktcVgsT wcryg NIRB_KLEPN : 633- 643: aygks L-RtvkscVgsT wcryg NIR_BETVE : 241- 252: laftn LpRkwnvcVvgS hdlfe NIR_EMENI : 581- 590: iairq L-Rtfdd-VmkS agkcp NIR_EMENI : 714- 724: ryaks L-RtvkscVgtT wcrfg NIR_MAIZE : 226- 237: ptitn LpRkwnvcVigS hdlye NIR_NEUCR : 244- 255: lgvev LtRkrvkeVecD eskde NIR_NEUCR : 711- 721: ayaks L-RtvkscVgtT wcryg NIR_SPIOL : 253- 264: lsitn LpRkwnpcVigS hdlye NIR_SYNP7 : 248- 258: hsvir LsRaile-VfrD ngsrg SIR_DESVH : 198- 207: nsgkr L-Rvskf-VekT gieai SIR_SYNP7 : 221- 232: ysdry LpRkfkiaVtvP gdnsi G 7: 12.0102 24( 14) G-x(5)-G-x(3,4)-A Occurences: 24(14) ASRC_SALTY : 103- 114: edtka GylaigGrnivA cqgnr COBG_PSEDE : 77- 87: eitar GnlqlrGlsa-A svprl COBG_PSEDE : 156- 166: vvids GgrfglGavv-A dirlq CYSI_ECOLI : 6- 17: sekhp GplvveGkltdA ermkl CYSI_ECOLI : 477- 488: vmrvt GcpngcGramlA evglv CYSI_SALTY : 6- 17: sekhp GplvveGklsdA ermkl CYSI_SALTY : 371- 382: ildyp GrplktGlleiA kihqg CYSI_SALTY : 477- 488: vmrvt GcpngcGramlA eiglv NIRB_ECOLI : 332- 343: gvdvg GigdahGrtpgA rsyvy NIRB_KLEPN : 859- 870: ipqqa GigarlGerqiA lfrfg NIR_BETVE : 388- 398: glsyv GlhipvGrvq-A ddmde NIR_BETVE : 501- 512: rmhwt GcpnscGqvqvA digfm NIR_EMENI : 394- 405: fadrd GpkflpGqrpsA esiga NIR_EMENI : 780- 791: iatek GfnifvGgnggA kprhs NIR_MAIZE : 373- 383: glsyv GlhvpvGrlq-A admfe NIR_MAIZE : 373- 384: glsyv GlhvpvGrlqaA dmfel NIR_MAIZE : 487- 498: rmhwt GcpnscGqvqvA digfm NIR_NEUCR : 270- 280: kkrvk GirfedGeyl-A cstic NIR_NEUCR : 1138- 1149: skgve GkkgrrGrkpgA seagk NIR_SPIOL : 400- 410: glsfv GlhipvGrlq-A demee NIR_SPIOL : 513- 524: rmhwt GcpnscGqvqvA digfm NIR_SYNP7 : 436- 447: rihwt GcpnscGqpqvA diglm SIR_DESVH : 100- 110: avcrf GlqdslGigv-A ieeey SIR_DESVH : 161- 171: vggns GghpriGdvl-A eelst SIR_SYNP7 : 185- 196: elwld GekvlsGepdpA vlaar H 8: 12.0102 25( 14) L-x(2)-V-x(0,1)-G Occurences: 25(14) ASRC_SALTY : 18- 23: kneyr LskVrG eamis COBG_PSEDE : 389- 393: pkpse LtlV-G apsgy CYSI_ECOLI : 136- 140: pvhqm LhsV-G ldala CYSI_ECOLI : 310- 314: ktkyt LerV-G vetfk CYSI_ECOLI : 487- 491: cgram LaeV-G lvgka CYSI_SALTY : 136- 140: pvhqm LhsV-G ldala CYSI_SALTY : 310- 314: ktkyt LerV-G letfk NIRB_ECOLI : 499- 504: qelfh LirVeG iktfe NIRB_ECOLI : 581- 585: itpeg LmaV-G riare NIRB_KLEPN : 6- 10: mtkpv LvlV-G hgmvg NIRB_KLEPN : 61- 66: rsaes LslVeG dfftq NIR_BETVE : 183- 187: eilkg LdeV-G ltslq NIR_BETVE : 384- 388: qkqeg LsyV-G lhipv NIR_EMENI : 1049- 1054: ppvee LdsVlG tekwk NIR_MAIZE : 168- 172: aildg LraV-G ltslq NIR_MAIZE : 369- 373: qkqeg LsyV-G lhvpv NIR_NEUCR : 33- 37: ivvvg LgmV-G iafie NIR_NEUCR : 233- 238: agalv LegVrG lgvev NIR_SPIOL : 195- 199: eiikg LesV-G ltslq NIR_SPIOL : 396- 400: qkqqg LsfV-G lhipv NIR_SYNP7 : 122- 126: efler LhaV-G ltsvq NIR_SYNP7 : 320- 324: qkqag LnfV-G lhvpv SIR_DESVH : 56- 60: tsgqr LalV-G mkkea SIR_DESVH : 140- 144: cgety LrdV-G lvgtk SIR_SYNP7 : 503- 507: pymae LafV-G sapnt I 9: 12.0102 23( 14) L-x(4)-G-x(3,4)-E Occurences: 23(14) ASRC_SALTY : 198- 208: havgc LalknGkavkE esaci COBG_PSEDE : 318- 328: avaqs LaashGfriaE qdprn CYSI_ECOLI : 250- 259: lvgfn LlvggGlsi-E hgnkk CYSI_ECOLI : 460- 469: dnidn LmakhGvsd-E hivmr CYSI_ECOLI : 530- 540: eilas LdeliGrwakE reage CYSI_SALTY : 250- 259: lvgfn LlvggGlsi-E hgnkk CYSI_SALTY : 530- 540: dilas LdeliGrwakE reage NIRB_ECOLI : 499- 509: qelfh LirveGiktfE ellak NIRB_KLEPN : 247- 257: rpqda LarsgGlsvgE rggic NIRB_KLEPN : 767- 776: lremi LedslGige-E leqem NIR_BETVE : 567- 577: lvvdi LvkhfGavprE reese NIR_EMENI : 848- 857: lkdvv LndklGiaa-E merqm NIR_MAIZE : 115- 125: rfmmr LklpnGvttsE qtryl NIR_MAIZE : 553- 563: ivadl LverfGavprE reede NIR_NEUCR : 233- 242: agalv LegvrGlgv-E vltrk NIR_NEUCR : 296- 306: karde LareaGitcaE rgggg NIR_SPIOL : 142- 152: rfmmr LklpnGvttsE qtryl NIR_SPIOL : 579- 589: vvaei LinqfGavprE reeae NIR_SYNP7 : 325- 335: lnfvg LhvpvGrlttE dlyel SIR_DESVH : 73- 82: pmwee LrldvGrav-E lcvhy SIR_SYNP7 : 171- 180: niadl LtpesGayy-E lwldg SIR_SYNP7 : 424- 434: aaidk LlrdrGvhtvE aidsl SIR_SYNP7 : 473- 482: vrirr LleeqGlpd-E hfvvr J 10: 11.5102 17( 14) R-Q-x(3,5)-G Occurences: 17(14) ASRC_SALTY : 61- 68: ihltt RQklampG iryed COBG_PSEDE : 431- 437: lgrlv RQnkda-G esaqs CYSI_ECOLI : 116- 123: irltn RQtfqfhG ilkkn CYSI_SALTY : 116- 123: irltn RQtfqfhG ilkkn NIRB_ECOLI : 618- 624: lpeiw RQliea-G fetgh NIRB_KLEPN : 820- 825: detvq RQtlr--G qpqla NIRB_KLEPN : 922- 927: rlrdg RQcdg--G eqavr NIR_BETVE : 163- 170: advtt RQnwqirG vvlsd NIR_EMENI : 43- 50: qdpnr RQkivvvG lgmva NIR_EMENI : 232- 239: kwvla RQldgdaG slvtk NIR_MAIZE : 148- 155: advtt RQnwqirG vtlpd NIR_NEUCR : 222- 229: gwvls RQvdgeaG alvle NIR_SPIOL : 175- 182: advtt RQnwqirG vvlpd NIR_SYNP7 : 102- 109: iditt RQnlqlrG llled SIR_DESVH : 213- 218: gieai RQavl--G SIR_SYNP7 : 106- 113: lratt RQafqlhG ilkrd SIR_SYNP7 : 554- 561: ffkqs RQagesfG dfcdr K 11: 11.5102 20( 14) E-A-x(2,4)-A Occurences: 20(14) ASRC_SALTY : 312- 316: vqlnp EAmv--A eriyw COBG_PSEDE : 275- 280: afaqv EAaal-A sylhq CYSI_ECOLI : 168- 173: sqlha EAyew-A kkise CYSI_SALTY : 168- 173: sqlha EAyew-A kkise NIRB_ECOLI : 159- 163: gllgl EAag--A lknlg NIRB_KLEPN : 159- 163: gllgl EAan--A lkqlg NIR_BETVE : 292- 298: prrca EAvpldA wvsad NIR_EMENI : 206- 210: gllgl EAak--A mtdle NIR_EMENI : 1022- 1027: rcqnd EAmni-A tfpve NIR_MAIZE : 135- 139: lasvi EAyg--A dgcad NIR_MAIZE : 277- 283: pkrwa EAlpldA wvagd NIR_NEUCR : 196- 200: gllgl EAak--A lmdlq NIR_NEUCR : 299- 305: delar EAgitcA erggg NIR_NEUCR : 587- 592: pdvmr EAgad-A dslgc NIR_NEUCR : 598- 603: dslgc EAckp-A iasif NIR_NEUCR : 872- 878: fdewa EAlnnpA mqerf NIR_SPIOL : 304- 310: ikrce EAipldA wvsae NIR_SYNP7 : 288- 292: rqvvs EAyg--A plaaa SIR_DESVH : 210- 215: ektgi EAirq-A vlg SIR_SYNP7 : 617- 621: tdlac EAia--A ylr L 12: 11.5102 27( 14) E-x(0,1)-A-x(2,3)-A Occurences: 27(14) ASRC_SALTY : 312- 316: vqlnp E-Amv-A eriyw COBG_PSEDE : 121- 126: gidpd EiAdp-A piate COBG_PSEDE : 275- 280: afaqv EaAal-A sylhq COBG_PSEDE : 275- 280: afaqv E-AaalA sylhq COBG_PSEDE : 310- 315: lglcp EtAav-A qslaa CYSI_ECOLI : 168- 173: sqlha E-AyewA kkise CYSI_SALTY : 168- 173: sqlha E-AyewA kkise NIRB_ECOLI : 159- 163: gllgl E-Aag-A lknlg NIRB_ECOLI : 311- 317: hilgs EnAfegA dlsak NIRB_ECOLI : 315- 321: senaf EgAdlsA klkll NIRB_KLEPN : 159- 163: gllgl E-Aan-A lkqlg NIRB_KLEPN : 928- 933: qcdgg EqAvr-A wpvkv NIR_BETVE : 403- 408: addmd ElArl-A dtygc NIR_EMENI : 206- 210: gllgl E-Aak-A mtdle NIR_EMENI : 1022- 1027: rcqnd E-AmniA tfpve NIR_MAIZE : 135- 139: lasvi E-Ayg-A dgcad NIR_MAIZE : 388- 393: aadmf ElArl-A deygt NIR_NEUCR : 196- 200: gllgl E-Aak-A lmdlq NIR_NEUCR : 295- 300: ikard ElAre-A gitca NIR_NEUCR : 347- 353: igpgv EmAdvlA fnfsq NIR_NEUCR : 587- 592: pdvmr E-AgadA dslgc NIR_NEUCR : 598- 603: dslgc E-AckpA iasif NIR_SPIOL : 415- 420: ademe ElAri-A dvygs NIR_SYNP7 : 288- 292: rqvvs E-Ayg-A plaaa NIR_SYNP7 : 339- 344: tedly ElArl-A dtygq SIR_DESVH : 210- 215: ektgi E-AirqA vlg SIR_SYNP7 : 158- 164: drpey EwArtyA nniad SIR_SYNP7 : 617- 621: tdlac E-Aia-A ylr M 13: 11.5102 26( 14) G-x(4,5)-R-x(1,2)-A Occurences: 26(14) ASRC_SALTY : 169- 177: dlgii Gvakm-RftA drcig COBG_PSEDE : 17- 26: ltgda GtvasmRrgA cpsla COBG_PSEDE : 290- 297: qvqal Ganai-Rl-A pghaf CYSI_ECOLI : 296- 304: tqrdw Gnrtd-RknA ktkyt CYSI_ECOLI : 535- 543: ldeli GrwakeRe-A gegfg CYSI_SALTY : 296- 304: tqrdw Gnrtd-RknA ktkyt CYSI_SALTY : 535- 543: ldeli GrwakeRe-A gegfg NIRB_ECOLI : 580- 588: eitpe GlmavgRi-A refnl NIRB_ECOLI : 710- 717: yvcgn Ggmkp-Rh-A dllaa NIRB_KLEPN : 294- 302: glvap GyqmaaRr-A atlag NIRB_KLEPN : 294- 303: glvap GyqmaaRraA tlage NIRB_KLEPN : 708- 715: yvcgn Ggmkp-Rh-A dlfas NIRB_KLEPN : 861- 870: qqagi GarlgeRqiA lfrfg NIR_BETVE : 282- 291: fnllv GgffspRrcA eavpl NIR_BETVE : 283- 291: nllvg GffsprRc-A eavpl NIR_BETVE : 283- 291: nllvg Gffsp-RrcA eavpl NIR_EMENI : 703- 711: elvda GmesghRy-A kslrt NIR_EMENI : 1078- 1086: dkkys Gmkgk-RagA kgieg NIR_MAIZE : 3- 11: ip GrtgraRa-A vsvpp NIR_MAIZE : 268- 276: nllvg GfispkRw-A ealpl NIR_NEUCR : 158- 166: ghdas Gvfvy-RniA dlqsl NIR_NEUCR : 753- 762: hkikg GvsgctRecA eagnk NIR_SPIOL : 584- 593: linqf GavpreReeA e NIR_SYNP7 : 222- 230: nvwvg GffsstRv-A paipl SIR_DESVH : 208- 215: fvekt Gieai-Rq-A vlg SIR_SYNP7 : 307- 315: tqrdy GdrsnrRh-A rmkyl SIR_SYNP7 : 307- 315: tqrdy Gdrsn-RrhA rmkyl SIR_SYNP7 : 381- 388: rikdd Gnwql-Rs-A lreiv SIR_SYNP7 : 519- 527: qlwlg GspdqtRl-A rpfid N 14: 11.5102 27( 14) G-x(3,4)-R-x(2,3)-L Occurences: 27(14) ASRC_SALTY : 130- 138: ntdtt Glsr-RlekL vypsp COBG_PSEDE : 218- 226: klasl Gttm-RgrdL dpsei COBG_PSEDE : 420- 429: dengm GsalaRlgrL vrqnk CYSI_ECOLI : 494- 502: evglv GkapgRyn-L hlggn CYSI_SALTY : 494- 502: eiglv GkapgRyn-L hlggn NIRB_ECOLI : 242- 249: ivfst Girp-Rdk-L atqcg NIRB_ECOLI : 585- 593: glmav Gria-RefnL ytkit NIRB_ECOLI : 710- 719: yvcgn GgmkpRhadL laadi NIRB_ECOLI : 711- 719: vcgng Gmkp-RhadL laadi NIRB_KLEPN : 583- 591: gliai GqiakRyq-L yskvt NIRB_KLEPN : 708- 717: yvcgn GgmkpRhadL fasdl NIRB_KLEPN : 709- 717: vcgng Gmkp-RhadL fasdl NIRB_KLEPN : 758- 767: dnleg GvdylRemiL edslg NIR_BETVE : 124- 132: rkhhy GrfmmRlk-L pngvt NIR_EMENI : 291- 298: icfai Girp-Rde-L ggstg NIR_EMENI : 789- 798: fvggn GgakpRhseL lakdv NIR_EMENI : 790- 798: vggng Gakp-RhseL lakdv NIR_MAIZE : 109- 117: rkhqy GrfmmRlk-L pngvt NIR_NEUCR : 289- 296: icfai Gika-Rde-L areag NIR_SPIOL : 136- 144: rkhhy GrfmmRlk-L pngvt NIR_SYNP7 : 44- 53: eamdp GdrehRlkwL gifwr SIR_DESVH : 7- 15: sdepk GailqRdk-L tyaiv SIR_DESVH : 93- 101: vqacp GtavcRfg-L qdslg SIR_DESVH : 136- 145: cpfcc GetylRdvgL vgtkk SIR_DESVH : 208- 217: fvekt GieaiRqavL g SIR_SYNP7 : 381- 389: rikdd GnwqlRsa-L reivs SIR_SYNP7 : 465- 473: eralp Gllv-RirrL leeqg O 15: 11.5102 21( 14) R-L-x(0,2)-R Occurences: 21(14) ASRC_SALTY : 238- 242: qlwqv RLggR tskks COBG_PSEDE : 425- 428: gsala RLg-R lvrqn COBG_PSEDE : 428- 431: larlg RLv-R qnkda CYSI_ECOLI : 112- 116: iygsi RLtnR qtfqf CYSI_SALTY : 112- 116: iygsi RLtnR qtfqf NIRB_ECOLI : 785- 787: eeema RL--R eavlc NIRB_KLEPN : 744- 747: irtad RLq-R tstwm NIRB_KLEPN : 863- 867: agiga RLgeR qialf NIRB_KLEPN : 917- 919: ykqri RL--R dgrqc NIR_BETVE : 42- 46: evdag RLepR veere NIR_EMENI : 739- 743: vgmai RLeqR yksir NIR_MAIZE : 26- 30: qvpte RLepR veera NIR_MAIZE : 432- 436: llqeq RLspR psmll NIR_NEUCR : 577- 579: iisvk RL--R tlpdv NIR_NEUCR : 736- 740: vgmav RLeeR ykglr NIR_SPIOL : 54- 58: svdaa RLepR veerd NIR_SYNP7 : 68- 70: grfma RL--R ipsgi NIR_SYNP7 : 247- 250: dhsvi RLs-R ailev SIR_DESVH : 197- 199: dnsgk RL--R vskfv SIR_SYNP7 : 73- 75: fqfml RL--R spggy SIR_SYNP7 : 525- 528: spdqt RLa-R pfidr P 16: 11.5102 18( 14) G-x(2)-R-x(2,4)-E Occurences: 18(14) ASRC_SALTY : 130- 136: ntdtt GlsRrl--E klvyp ASRC_SALTY : 295- 301: lidkg GylRfk--E rvlrg COBG_PSEDE : 380- 388: sgcak GcaRpkpsE ltlvg CYSI_ECOLI : 481- 489: tgcpn GcgRamlaE vglvg CYSI_SALTY : 481- 489: tgcpn GcgRamlaE iglvg NIRB_ECOLI : 680- 687: kfgvs GctRecs-E aqgkd NIRB_KLEPN : 678- 685: kmavs GctReca-E aqgkd NIR_BETVE : 414- 421: dtygc GelRltv-E qniii NIR_EMENI : 759- 766: kgavs GcvReca-E aqnkd NIR_MAIZE : 399- 406: deygt GelRltv-E qnivl NIR_NEUCR : 756- 763: kggvs GctReca-E agnkd NIR_NEUCR : 1122- 1129: geage GqlReld-E lnksk NIR_SPIOL : 426- 433: dvygs GelRltv-E qniii NIR_SYNP7 : 350- 357: dtygq GevRltv-E qnvil SIR_DESVH : 181- 188: tdeak GliRkfm-E fyrdn SIR_SYNP7 : 250- 257: glvvi GndRgel-E gfnvy SIR_SYNP7 : 266- 274: vyvgg GmgRthnkE etfar SIR_SYNP7 : 494- 502: tgcpn GcaRpymaE lafvg Q 17: 11.5102 23( 14) T-x(0,2)-A-x(2)-L Occurences: 23(14) ASRC_SALTY : 100- 105: vqved Tk-AgyL aiggr COBG_PSEDE : 6- 12: mtdlm TscAlpL tgdag COBG_PSEDE : 361- 365: erlve T--ApeL ldgsl CYSI_ECOLI : 30- 35: nylrg Ti-AedL ndglt CYSI_SALTY : 30- 35: nylrg Ti-AedL ndglt NIRB_ECOLI : 57- 61: yfshh T--AeeL slvre NIRB_ECOLI : 743- 747: mfyir T--AdkL trtap NIRB_ECOLI : 748- 754: tadkl TrtApwL enleg NIRB_ECOLI : 750- 754: dkltr T--ApwL enleg NIRB_KLEPN : 653- 659: gvqds TglAvtL ehryk NIRB_KLEPN : 741- 745: mfyir T--AdrL qrtst NIR_BETVE : 474- 479: qaiie Tk-AraL kvtee NIR_EMENI : 656- 660: pggei T--AdkL iaigq NIR_EMENI : 822- 826: ifyir T--AdkL qrtar NIR_EMENI : 829- 833: dklqr T--ArwL eslpg NIR_MAIZE : 460- 465: qaiie Tk-AraL qvare NIR_NEUCR : 106- 111: thhls Ta-AlsL spatk NIR_NEUCR : 819- 823: mfyir T--AdkL qrtar NIR_NEUCR : 826- 830: dklqr T--ArwL ealpg NIR_SPIOL : 486- 491: qaiie Tk-AraL kvtee NIR_SYNP7 : 372- 378: daqlp TllAepL ltrfs SIR_DESVH : 176- 182: aeels TdeAkgL irkfm SIR_SYNP7 : 105- 111: tlrat TrqAfqL hgilk R 18: 11.5102 21( 14) L-x(0,1)-T-x(3,4)-G Occurences: 21(14) ASRC_SALTY : 146- 152: pspyh LkTviv-G cpndc COBG_PSEDE : 12- 17: scalp L-Tgda-G tvasm COBG_PSEDE : 217- 223: eklas LgTtmr-G rdldp COBG_PSEDE : 370- 376: lldgs L-TvhlsG cakgc CYSI_ECOLI : 39- 45: dlndg L-TggfkG dnfll CYSI_SALTY : 39- 45: dlndg L-TggfkG dnfll NIRB_ECOLI : 593- 599: arefn LyTkit-G sqrla NIRB_KLEPN : 49- 55: ydrvh L-TeyfaG rsaes NIR_BETVE : 188- 194: ldevg L-TslqsG mdnvr NIR_EMENI : 159- 165: gsdav LpTstp-G hdakg NIR_MAIZE : 173- 179: lravg L-TslqsG mdnvr NIR_MAIZE : 506- 512: gfmgc L-TkdsdG kivea NIR_NEUCR : 147- 153: gssal LpTstp-G hdasg NIR_NEUCR : 669- 675: akeyn LyTkit-G gqrid NIR_NEUCR : 669- 676: akeyn LyTkitgG qridm NIR_SPIOL : 200- 206: lesvg L-TslqsG mdnvr NIR_SYNP7 : 127- 133: lhavg L-TsvqsG mdnvr NIR_SYNP7 : 167- 173: alqdd L-TaagqG nseft SIR_DESVH : 174- 181: vlaee LsTdeakG lirkf SIR_SYNP7 : 170- 176: nniad LlTpes-G ayyel SIR_SYNP7 : 171- 176: niadl L-Tpes-G ayyel SIR_SYNP7 : 239- 245: dnsid LfTqdi-G lvvig S 19: 11.5102 33( 14) L-x(3,4)-E-x(3,4)-L Occurences: 33(14) ASRC_SALTY : 270- 278: qvivn Lyef-Ekem-L ggkpi COBG_PSEDE : 207- 217: avvpa LitilEklasL gttmr COBG_PSEDE : 226- 234: mrgrd Ldps-Eira-L crcet CYSI_ECOLI : 14- 22: vvegk Ltda-Ermk-L esnyl CYSI_ECOLI : 357- 367: ddnwh LtlfiEngriL dypar CYSI_ECOLI : 441- 450: fptcp Lama-EaerfL psfid CYSI_SALTY : 14- 22: vvegk Lsda-Ermk-L esnyl CYSI_SALTY : 357- 367: ddkwh LtlfiEngriL dypgr CYSI_SALTY : 441- 450: fptcp Lama-EaerfL psftd NIRB_ECOLI : 155- 164: vvggg Llgl-EaagaL knlgi NIRB_ECOLI : 349- 359: rsyvy LdeskEiykrL ivsed NIRB_ECOLI : 359- 368: eiykr Livs-EdnktL lgavl NIRB_KLEPN : 155- 164: viggg Llgl-EaanaL kqlgl NIRB_KLEPN : 391- 400: lngma LpkhpEsli-L paleg NIRB_KLEPN : 884- 893: yaldn LepgsEanv-L srgll NIR_BETVE : 70- 79: npqek LklerEpmk-L fmegg NIR_BETVE : 173- 183: irgvv LsdvpEilkgL devgl NIR_EMENI : 551- 561: fnktm LdmgqEvsnnL cvhip NIR_EMENI : 619- 627: lfnph Lmdk-Eyhe-L qetnd NIR_EMENI : 1043- 1053: wiymk LppveEldsvL gtekw NIR_MAIZE : 49- 57: kyrag Lnpq-Ekvk-L ekepm NIR_MAIZE : 401- 411: ygtge LrltvEqnivL pnvsn NIR_NEUCR : 192- 201: vvggg Llgl-EaakaL mdlqv NIR_NEUCR : 510- 518: dlvap Lksg-Ects-L gdlks NIR_NEUCR : 1097- 1107: mvyik LppvdEldreL gtkkw NIR_SPIOL : 185- 195: irgvv LpdvpEiikgL esvgl NIR_SPIOL : 408- 416: ipvgr Lqad-Emee-L ariad NIR_SPIOL : 491- 500: tkara LkvteEvqr-L vsvtr NIR_SPIOL : 491- 500: tkara Lkvt-EevqrL vsvtr NIR_SYNP7 : 11- 19: attek Lnkf-Eklk-L ekdgl NIR_SYNP7 : 112- 122: lrgll LedtpEflerL havgl NIR_SYNP7 : 301- 310: aaape Lmdw-EkrdfL gvhpq SIR_DESVH : 174- 182: vlaee Lstd-Eakg-L irkfm SIR_SYNP7 : 454- 463: lptcg Lait-EseraL pgllv T 20: 11.5102 35( 14) L-x(2,3)-E-x(3,4)-L Occurences: 35(14) ASRC_SALTY : 270- 278: qvivn LyefEkem-L ggkpi COBG_PSEDE : 107- 114: aiaeg Lai-Evpp-L agidp COBG_PSEDE : 226- 234: mrgrd LdpsEira-L crcet CYSI_ECOLI : 14- 22: vvegk LtdaErmk-L esnyl CYSI_ECOLI : 359- 367: nwhlt Lfi-EngriL dypar CYSI_ECOLI : 441- 450: fptcp LamaEaerfL psfid CYSI_SALTY : 14- 22: vvegk LsdaErmk-L esnyl CYSI_SALTY : 359- 367: kwhlt Lfi-EngriL dypgr CYSI_SALTY : 441- 450: fptcp LamaEaerfL psftd NIRB_ECOLI : 155- 164: vvggg LlglEaagaL knlgi NIRB_ECOLI : 156- 164: vgggl Lgl-EaagaL knlgi NIRB_ECOLI : 359- 368: eiykr LivsEdnktL lgavl NIRB_ECOLI : 541- 548: wneyi Lkp-Ehtp-L qdsnd NIRB_ECOLI : 779- 786: glnah Lee-Emar-L reavl NIRB_KLEPN : 155- 164: viggg LlglEaanaL kqlgl NIRB_KLEPN : 156- 164: igggl Lgl-EaanaL kqlgl NIR_BETVE : 72- 79: qeklk Ler-Epmk-L fmegg NIR_EMENI : 619- 627: lfnph LmdkEyhe-L qetnd NIR_MAIZE : 49- 57: kyrag LnpqEkvk-L ekepm NIR_MAIZE : 57- 64: qekvk Lek-Epma-L fmegg NIR_MAIZE : 403- 411: tgelr Ltv-EqnivL pnvsn NIR_NEUCR : 192- 201: vvggg LlglEaakaL mdlqv NIR_NEUCR : 193- 201: vgggl Lgl-EaakaL mdlqv NIR_NEUCR : 231- 239: geaga Lvl-EgvrgL gvevl NIR_NEUCR : 510- 518: dlvap LksgEcts-L gdlks NIR_NEUCR : 549- 557: rtmas Lgt-EvknnL cphfp NIR_SPIOL : 408- 416: ipvgr LqadEmee-L ariad NIR_SPIOL : 491- 500: tkara LkvtEevqrL vsvtr NIR_SYNP7 : 11- 19: attek LnkfEklk-L ekdgl NIR_SYNP7 : 17- 24: nkfek Lkl-Ekdg-L avrdq NIR_SYNP7 : 301- 310: aaape LmdwEkrdfL gvhpq NIR_SYNP7 : 332- 340: vpvgr Ltt-EdlyeL arlad NIR_SYNP7 : 354- 362: qgevr Ltv-EqnviL thipd SIR_DESVH : 174- 182: vlaee LstdEakg-L irkfm SIR_SYNP7 : 454- 463: lptcg LaitEseraL pgllv Number of patterns evaluated by Pratt:4947 Total running time: 8 seconds