------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 9 sequences from file NEUTRO_BACTENECIN_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 9 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename NEUTRO_BACTENECIN_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: BCT1_BOVIN 155 BCT5_BOVIN 176 BCT7_BOVIN 190 CP18_RABIT 171 ICTL_PIG 96 INDC_BOVIN 144 P15A_RABIT 137 P15B_RABIT 137 PR39_PIG 39 Pratt run started at Thu Feb 6 20:24:53 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 12.0102 18( 9) L-x(4)-P-x(0,1)-P 2: 12.0102 10( 9) R-L-x(4,5)-P 3: 12.0102 13( 9) R-x(0,1)-L-x(4)-P 4: 12.0102 10( 9) R-x(3)-L-x(0,1)-R 5: 11.5102 15( 9) L-x(2,3)-P-x(0,1)-P 6: 11.5102 36( 9) R-x(4,5)-P-x(0,1)-P 7: 11.0102 38( 9) R-x(3,5)-P-x(0,1)-P 8: 11.0102 41( 9) R-x(4,5)-P-x(0,2)-P 9: 10.5102 19( 9) L-x(1,3)-P-x(0,2)-P 10: 10.5102 45( 9) R-x(3,5)-P-x(0,2)-P 11: 8.3401 31( 9) P-R 12: 8.3401 33( 9) P-P 13: 8.3401 29( 9) R-x(5)-P 14: 8.3401 29( 9) P-x(2)-P 15: 8.3401 17( 9) L-x-R 16: 8.3401 33( 9) R-x(4)-P 17: 7.8401 43( 9) R-x(3,4)-R 18: 7.8401 42( 9) R-x(3,4)-P 19: 7.3401 50( 9) R-x(2,4)-P 20: 7.3401 17( 9) G-x(1,3)-P Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 27.5389 11( 9) R-x(3,4)-R-[AP]-[LPV]-x(4)-[DEPQ]-x-[DPS]-x(4)-[ILP]-x(2)-[LP]-x(4)-[PQ] B 2: 17.3283 10( 9) R-x-[ALP]-x-L-x(0,1)-R-[ACP] C 3: 16.1009 9( 9) R-L-x(4,5)-P-x(4)-[DENPS]-x(2)-[DGPS] D 4: 14.6616 18( 9) L-x(4)-P-x(0,1)-P-x(4)-[DKR] E 5: 14.1855 10( 9) R-L-x(4,5)-P-x(3)-[DENP] F 6: 14.1855 13( 9) R-x(0,1)-L-x(4)-P-x(3)-[DENP] G 7: 13.5245 11( 9) R-x(4)-[DPQ]-P-x(3)-[DER] H 8: 13.1941 14( 9) R-x(4,5)-P-x(0,2)-P-[EPST] I 9: 13.1645 22( 9) P-R-[APTV]-x(3)-[ALP] J 10: 13.0986 14( 9) R-x(3,5)-P-x(0,2)-P-x(3)-[DNR] K 11: 11.5102 15( 9) L-x(2,3)-P-x(0,1)-P L 12: 11.5102 36( 9) R-x(4,5)-P-x(0,1)-P M 13: 11.0130 10( 9) L-x-R-[ILP] N 14: 11.0102 38( 9) R-x(3,5)-P-x(0,1)-P O 15: 10.9474 12( 9) P-P-x(4)-[DPS] P 16: 10.9341 10( 9) R-x(2)-[EQR]-x-P Q 17: 10.5102 19( 9) L-x(1,3)-P-x(0,2)-P R 18: 10.0947 33( 9) R-x(3,4)-P-x(3)-[CGPT] S 19: 9.5947 39( 9) R-x(2,4)-P-x(3)-[CGPT] T 20: 8.3401 29( 9) P-x(2)-P Best patterns with alignements: fitness hits(seqs) Pattern A 1: 27.5389 11( 9) R-x(3,4)-R-[AP]-[LPV]-x(4)-[DEPQ]-x-[DPS]-x(4)-[ILP]-x(2)-[LP]-x(4)-[PQ] Occurences: 11(9) BCT1_BOVIN : 35- 62: qalsy ReavlRAVdqlnEqSsepnIyrLleldQ ppqdd BCT5_BOVIN : 35- 62: qalsy ReavlRAVdqfnErSseanLyrLleldP tpndd BCT7_BOVIN : 35- 62: qalsy ReavlRAVdrinErSseanLyrLleldP ppkdv CP18_RABIT : 35- 62: qdlty ReavlRAVdafnQqSseanLyrLlsmdP qqled ICTL_PIG : 5- 32: qlry ReavlRAVdrlnEqSseanLyrLleldQ ppkad INDC_BOVIN : 35- 62: qalsy ReavlRAVdqlnElSseanLyrLleldP ppkdn P15A_RABIT : 105- 132: rgafv RrrwvRALtlrcDrDqrrqPefPrvtrP agpta P15A_RABIT : 106- 132: gafvr Rrwv-RALtlrcDrDqrrqPefPrvtrP agpta P15B_RABIT : 105- 132: rgafv RrrrvRALtlrcDrDqrrqPefPrvtrP agpta P15B_RABIT : 106- 132: gafvr Rrrv-RALtlrcDrDqrrqPefPrvtrP agpta PR39_PIG : 1- 27: Rrrp-RPPylprPrPppffPprLppriP pgfpp B 2: 17.3283 10( 9) R-x-[ALP]-x-L-x(0,1)-R-[ACP] Occurences: 10(9) BCT1_BOVIN : 35- 41: qalsy ReAvL-RA vdqln BCT5_BOVIN : 35- 41: qalsy ReAvL-RA vdqfn BCT7_BOVIN : 35- 41: qalsy ReAvL-RA vdrin BCT7_BOVIN : 136- 143: rrirp RpPrLpRP rprpl CP18_RABIT : 35- 41: qdlty ReAvL-RA vdafn ICTL_PIG : 5- 11: qlry ReAvL-RA vdrln INDC_BOVIN : 35- 41: qalsy ReAvL-RA vdqln P15A_RABIT : 110- 116: rrrwv RaLtL-RC drdqr P15B_RABIT : 110- 116: rrrrv RaLtL-RC drdqr PR39_PIG : 5- 12: rrrp RpPyLpRP rpppf C 3: 16.1009 9( 9) R-L-x(4,5)-P-x(4)-[DENPS]-x(2)-[DGPS] Occurences: 9(9) BCT1_BOVIN : 56- 71: epniy RLleldqPpqddEdpD spkrv BCT5_BOVIN : 56- 70: eanly RLleld-PtpndDldP gtrkp BCT7_BOVIN : 56- 71: eanly RLleldpPpkdvEdrG arkpt CP18_RABIT : 56- 70: eanly RLlsmd-PqqleDakP ytpqp ICTL_PIG : 26- 41: eanly RLleldqPpkadEdpG tpkpv INDC_BOVIN : 56- 71: eanly RLleldpPpkdnEdlG trkpv P15A_RABIT : 50- 64: gqplf RLleat-PppslNskS ripln P15B_RABIT : 50- 64: gqplf RLleat-PppslNskS ripln PR39_PIG : 21- 35: pffpp RLppri-PpgfpPrfP prfp D 4: 14.6616 18( 9) L-x(4)-P-x(0,1)-P-x(4)-[DKR] Occurences: 18(9) BCT1_BOVIN : 58- 69: niyrl LeldqP-PqddeD pdspk BCT5_BOVIN : 57- 69: anlyr LleldPtPnddlD pgtrk BCT7_BOVIN : 57- 69: anlyr LleldPpPkdveD rgark BCT7_BOVIN : 58- 69: nlyrl LeldpP-PkdveD rgark BCT7_BOVIN : 140- 152: prppr LprprPrPlpfpR pgprp BCT7_BOVIN : 148- 160: prprp LpfprPgPrpipR plpfp BCT7_BOVIN : 162- 174: piprp LpfprPgPrpipR plpfp BCT7_BOVIN : 176- 188: piprp LpfprPgPrpipR pl CP18_RABIT : 20- 31: lllll LgllmP-PaiaqD ltyre ICTL_PIG : 28- 39: nlyrl LeldqP-PkadeD pgtpk INDC_BOVIN : 57- 69: anlyr LleldPpPkdneD lgtrk INDC_BOVIN : 58- 69: nlyrl LeldpP-PkdneD lgtrk P15A_RABIT : 51- 63: qplfr LleatPpPslnsK sripl P15A_RABIT : 52- 63: plfrl LeatpP-PslnsK sripl P15B_RABIT : 51- 63: qplfr LleatPpPslnsK sripl P15B_RABIT : 52- 63: plfrl LeatpP-PslnsK sripl PR39_PIG : 9- 21: prppy LprprPpPffppR lppri PR39_PIG : 22- 33: ffppr LppriP-PgfppR fpprf E 5: 14.1855 10( 9) R-L-x(4,5)-P-x(3)-[DENP] Occurences: 10(9) BCT1_BOVIN : 56- 67: epniy RLleldqPpqdD edpds BCT5_BOVIN : 56- 66: eanly RLleld-PtpnD dldpg BCT7_BOVIN : 56- 66: eanly RLleld-PppkD vedrg BCT7_BOVIN : 139- 149: rprpp RLprpr-PrplP fprpg CP18_RABIT : 56- 66: eanly RLlsmd-PqqlE dakpy ICTL_PIG : 26- 37: eanly RLleldqPpkaD edpgt INDC_BOVIN : 56- 66: eanly RLleld-PppkD nedlg INDC_BOVIN : 56- 67: eanly RLleldpPpkdN edlgt P15A_RABIT : 50- 61: gqplf RLleatpPpslN sksri P15B_RABIT : 50- 61: gqplf RLleatpPpslN sksri PR39_PIG : 21- 31: pffpp RLppri-PpgfP prfpp PR39_PIG : 21- 32: pffpp RLppripPgfpP rfppr F 6: 14.1855 13( 9) R-x(0,1)-L-x(4)-P-x(3)-[DENP] Occurences: 13(9) BCT1_BOVIN : 56- 67: epniy RlLeldqPpqdD edpds BCT5_BOVIN : 56- 66: eanly R-LleldPtpnD dldpg BCT7_BOVIN : 56- 66: eanly R-LleldPppkD vedrg BCT7_BOVIN : 139- 149: rprpp R-LprprPrplP fprpg BCT7_BOVIN : 146- 157: prprp RpLpfprPgprP iprpl BCT7_BOVIN : 160- 171: prpip RpLpfprPgprP iprpl BCT7_BOVIN : 174- 185: prpip RpLpfprPgprP iprpl CP18_RABIT : 56- 66: eanly R-LlsmdPqqlE dakpy ICTL_PIG : 26- 37: eanly RlLeldqPpkaD edpgt INDC_BOVIN : 56- 66: eanly R-LleldPppkD nedlg INDC_BOVIN : 56- 67: eanly RlLeldpPpkdN edlgt P15A_RABIT : 50- 61: gqplf RlLeatpPpslN sksri P15B_RABIT : 50- 61: gqplf RlLeatpPpslN sksri PR39_PIG : 21- 31: pffpp R-LppriPpgfP prfpp G 7: 13.5245 11( 9) R-x(4)-[DPQ]-P-x(3)-[DER] Occurences: 11(9) BCT1_BOVIN : 87- 97: etvcs RttqqPPeqcD fkeng BCT5_BOVIN : 56- 66: eanly RllelDPtpnD dldpg BCT7_BOVIN : 56- 66: eanly RllelDPppkD vedrg BCT7_BOVIN : 87- 97: etvcp RtspqPPeqcD fkeng BCT7_BOVIN : 132- 142: lqsvr RirprPPrlpR prprp CP18_RABIT : 56- 66: eanly RllsmDPqqlE dakpy ICTL_PIG : 57- 67: etvcp RptrqPPelcD fkekq INDC_BOVIN : 56- 66: eanly RllelDPppkD nedlg P15A_RABIT : 118- 128: tlrcd RdqrrQPefpR vtrpa P15B_RABIT : 118- 128: tlrcd RdqrrQPefpR vtrpa PR39_PIG : 1- 11: RrrprPPylpR prppp H 8: 13.1941 14( 9) R-x(4,5)-P-x(0,2)-P-[EPST] Occurences: 14(9) BCT1_BOVIN : 87- 94: etvcs Rttqq-P--PE qcdfk BCT1_BOVIN : 131- 140: nhqsi Ritkq-PwaPP qaarl BCT5_BOVIN : 138- 148: rppir RppirpPfyPP frppi BCT5_BOVIN : 142- 152: rrppi RppfypPfrPP irppi BCT5_BOVIN : 150- 160: fyppf RppirpPifPP irppf BCT5_BOVIN : 154- 164: frppi RppifpPirPP frppl BCT7_BOVIN : 56- 64: eanly RlleldP--PP kdved BCT7_BOVIN : 87- 94: etvcp Rtspq-P--PE qcdfk CP18_RABIT : 126- 134: dircn Raqes-Pe-PT glrkr ICTL_PIG : 57- 64: etvcp Rptrq-P--PE lcdfk INDC_BOVIN : 56- 64: eanly RlleldP--PP kdned P15A_RABIT : 50- 58: gqplf RlleatP--PP slnsk P15A_RABIT : 50- 59: gqplf RlleatPp-PS lnsks P15B_RABIT : 50- 58: gqplf RlleatP--PP slnsk P15B_RABIT : 50- 59: gqplf RlleatPp-PS lnsks PR39_PIG : 11- 20: ppylp Rprpp-PffPP rlppr I 9: 13.1645 22( 9) P-R-[APTV]-x(3)-[ALP] Occurences: 22(9) BCT1_BOVIN : 4- 10: met PRAslsL grwsl BCT5_BOVIN : 86- 92: ketdc PRTsqqP leqcd BCT7_BOVIN : 86- 92: ketvc PRTspqP peqcd BCT7_BOVIN : 135- 141: vrrir PRPprlP rprpr BCT7_BOVIN : 141- 147: rpprl PRPrprP lpfpr BCT7_BOVIN : 143- 149: prlpr PRPrplP fprpg BCT7_BOVIN : 145- 151: lprpr PRPlpfP rpgpr BCT7_BOVIN : 151- 157: rplpf PRPgprP iprpl BCT7_BOVIN : 155- 161: fprpg PRPiprP lpfpr BCT7_BOVIN : 159- 165: gprpi PRPlpfP rpgpr BCT7_BOVIN : 165- 171: rplpf PRPgprP iprpl BCT7_BOVIN : 169- 175: fprpg PRPiprP lpfpr BCT7_BOVIN : 173- 179: gprpi PRPlpfP rpgpr BCT7_BOVIN : 179- 185: rplpf PRPgprP iprpl BCT7_BOVIN : 183- 189: fprpg PRPiprP l CP18_RABIT : 86- 92: ketec PRTtwkL peqcd ICTL_PIG : 56- 62: ketvc PRPtrqP pelcd INDC_BOVIN : 86- 92: ketvc PRTiqqP aeqcd P15A_RABIT : 127- 133: rqpef PRVtrpA gpta P15B_RABIT : 127- 133: rqpef PRVtrpA gpta PR39_PIG : 4- 10: rrr PRPpylP rprpp PR39_PIG : 10- 16: rppyl PRPrppP ffppr J 10: 13.0986 14( 9) R-x(3,5)-P-x(0,2)-P-x(3)-[DNR] Occurences: 14(9) BCT1_BOVIN : 87- 97: etvcs Rttqq-P--PeqcD fkeng BCT5_BOVIN : 162- 175: ifppi RppfrpPlgPfpgR r BCT7_BOVIN : 87- 97: etvcp Rtspq-P--PeqcD fkeng BCT7_BOVIN : 131- 142: elqsv RrirprP--PrlpR prprp BCT7_BOVIN : 131- 142: elqsv Rrir--PrpPrlpR prprp BCT7_BOVIN : 132- 142: lqsvr Rirpr-P--PrlpR prprp CP18_RABIT : 126- 137: dircn Raqes-Pe-PtglR krlrk ICTL_PIG : 57- 67: etvcp Rptrq-P--PelcD fkekq INDC_BOVIN : 56- 67: eanly RlleldP--PpkdN edlgt P15A_RABIT : 50- 61: gqplf RlleatP--PpslN sksri P15A_RABIT : 118- 131: tlrcd RdqrrqPefPrvtR pagpt P15B_RABIT : 50- 61: gqplf RlleatP--PpslN sksri P15B_RABIT : 118- 131: tlrcd RdqrrqPefPrvtR pagpt PR39_PIG : 1- 11: Rrrpr-P--PylpR prppp PR39_PIG : 2- 11: r Rrpr--P--PylpR prppp K 11: 11.5102 15( 9) L-x(2,3)-P-x(0,1)-P Occurences: 15(9) BCT1_BOVIN : 60- 64: yrlle Ldq-P-P qdded BCT5_BOVIN : 58- 64: nlyrl LeldPtP nddld BCT7_BOVIN : 58- 63: nlyrl LeldP-P pkdve BCT7_BOVIN : 58- 64: nlyrl LeldPpP kdved BCT7_BOVIN : 60- 64: yrlle Ldp-P-P kdved BCT7_BOVIN : 140- 145: prppr Lpr-PrP rplpf BCT7_BOVIN : 148- 153: prprp Lpf-PrP gprpi BCT7_BOVIN : 162- 167: piprp Lpf-PrP gprpi BCT7_BOVIN : 176- 181: piprp Lpf-PrP gprpi CP18_RABIT : 22- 26: llllg Llm-P-P aiaqd ICTL_PIG : 30- 34: yrlle Ldq-P-P kaded INDC_BOVIN : 58- 63: nlyrl LeldP-P pkdne INDC_BOVIN : 58- 64: nlyrl LeldPpP kdned INDC_BOVIN : 60- 64: yrlle Ldp-P-P kdned P15A_RABIT : 52- 57: plfrl LeatP-P pslns P15A_RABIT : 52- 58: plfrl LeatPpP slnsk P15B_RABIT : 52- 57: plfrl LeatP-P pslns P15B_RABIT : 52- 58: plfrl LeatPpP slnsk PR39_PIG : 9- 14: prppy Lpr-PrP ppffp L 12: 11.5102 36( 9) R-x(4,5)-P-x(0,1)-P Occurences: 36(9) BCT1_BOVIN : 87- 93: etvcs Rttqq-P-P eqcdf BCT5_BOVIN : 56- 64: eanly RlleldPtP nddld BCT5_BOVIN : 133- 140: qsvrf RppirrP-P irppf BCT5_BOVIN : 137- 144: frppi RrppirP-P fyppf BCT5_BOVIN : 138- 144: rppir Rppir-P-P fyppf BCT5_BOVIN : 142- 148: rrppi Rppfy-P-P frppi BCT5_BOVIN : 150- 156: fyppf Rppir-P-P ifppi BCT5_BOVIN : 154- 160: frppi Rppif-P-P irppf BCT5_BOVIN : 162- 168: ifppi Rppfr-P-P lgpfp BCT5_BOVIN : 166- 173: irppf Rpplg-PfP grr BCT7_BOVIN : 56- 63: eanly RlleldP-P pkdve BCT7_BOVIN : 56- 64: eanly RlleldPpP kdved BCT7_BOVIN : 87- 93: etvcp Rtspq-P-P eqcdf BCT7_BOVIN : 131- 138: elqsv RrirprP-P rlprp BCT7_BOVIN : 132- 138: lqsvr Rirpr-P-P rlprp BCT7_BOVIN : 136- 143: rrirp Rpprl-PrP rprpl BCT7_BOVIN : 139- 147: rprpp RlprprPrP lpfpr BCT7_BOVIN : 142- 149: pprlp Rprpr-PlP fprpg BCT7_BOVIN : 144- 151: rlprp Rprpl-PfP rpgpr BCT7_BOVIN : 146- 153: prprp Rplpf-PrP gprpi BCT7_BOVIN : 152- 159: plpfp Rpgpr-PiP rplpf BCT7_BOVIN : 156- 163: prpgp Rpipr-PlP fprpg BCT7_BOVIN : 160- 167: prpip Rplpf-PrP gprpi BCT7_BOVIN : 166- 173: plpfp Rpgpr-PiP rplpf BCT7_BOVIN : 170- 177: prpgp Rpipr-PlP fprpg BCT7_BOVIN : 174- 181: prpip Rplpf-PrP gprpi BCT7_BOVIN : 180- 187: plpfp Rpgpr-PiP rpl CP18_RABIT : 126- 133: dircn Raqes-PeP tglrk ICTL_PIG : 57- 63: etvcp Rptrq-P-P elcdf INDC_BOVIN : 56- 63: eanly RlleldP-P pkdne INDC_BOVIN : 56- 64: eanly RlleldPpP kdned P15A_RABIT : 50- 57: gqplf RlleatP-P pslns P15A_RABIT : 50- 58: gqplf RlleatPpP slnsk P15B_RABIT : 50- 57: gqplf RlleatP-P pslns P15B_RABIT : 50- 58: gqplf RlleatPpP slnsk PR39_PIG : 1- 7: Rrrpr-P-P ylprp PR39_PIG : 5- 12: rrrp Rppyl-PrP rpppf PR39_PIG : 13- 20: ylprp RpppffP-P rlppr PR39_PIG : 21- 28: pffpp RlppriP-P gfppr PR39_PIG : 25- 32: prlpp RippgfP-P rfppr M 13: 11.0130 10( 9) L-x-R-[ILP] Occurences: 10(9) BCT1_BOVIN : 145- 148: pqaar LcRI vvirv BCT5_BOVIN : 54- 57: ssean LyRL leldp BCT7_BOVIN : 54- 57: ssean LyRL leldp BCT7_BOVIN : 140- 143: prppr LpRP rprpl CP18_RABIT : 54- 57: ssean LyRL lsmdp ICTL_PIG : 24- 27: ssean LyRL leldq INDC_BOVIN : 54- 57: ssean LyRL leldp P15A_RABIT : 48- 51: qqgqp LfRL leatp P15B_RABIT : 48- 51: qqgqp LfRL leatp PR39_PIG : 9- 12: prppy LpRP rpppf N 14: 11.0102 38( 9) R-x(3,5)-P-x(0,1)-P Occurences: 38(9) BCT1_BOVIN : 87- 93: etvcs Rttqq-P-P eqcdf BCT5_BOVIN : 56- 64: eanly RlleldPtP nddld BCT5_BOVIN : 133- 140: qsvrf RppirrP-P irppf BCT5_BOVIN : 137- 144: frppi RrppirP-P fyppf BCT5_BOVIN : 138- 144: rppir Rppir-P-P fyppf BCT5_BOVIN : 142- 148: rrppi Rppfy-P-P frppi BCT5_BOVIN : 150- 156: fyppf Rppir-P-P ifppi BCT5_BOVIN : 154- 160: frppi Rppif-P-P irppf BCT5_BOVIN : 162- 168: ifppi Rppfr-P-P lgpfp BCT5_BOVIN : 166- 173: irppf Rpplg-PfP grr BCT7_BOVIN : 56- 63: eanly RlleldP-P pkdve BCT7_BOVIN : 56- 64: eanly RlleldPpP kdved BCT7_BOVIN : 87- 93: etvcp Rtspq-P-P eqcdf BCT7_BOVIN : 131- 138: elqsv RrirprP-P rlprp BCT7_BOVIN : 131- 137: elqsv Rrir--PrP prlpr BCT7_BOVIN : 132- 138: lqsvr Rirpr-P-P rlprp BCT7_BOVIN : 136- 143: rrirp Rpprl-PrP rprpl BCT7_BOVIN : 139- 145: rprpp Rlpr--PrP rplpf BCT7_BOVIN : 139- 147: rprpp RlprprPrP lpfpr BCT7_BOVIN : 142- 149: pprlp Rprpr-PlP fprpg BCT7_BOVIN : 144- 151: rlprp Rprpl-PfP rpgpr BCT7_BOVIN : 146- 153: prprp Rplpf-PrP gprpi BCT7_BOVIN : 152- 159: plpfp Rpgpr-PiP rplpf BCT7_BOVIN : 156- 163: prpgp Rpipr-PlP fprpg BCT7_BOVIN : 160- 167: prpip Rplpf-PrP gprpi BCT7_BOVIN : 166- 173: plpfp Rpgpr-PiP rplpf BCT7_BOVIN : 170- 177: prpgp Rpipr-PlP fprpg BCT7_BOVIN : 174- 181: prpip Rplpf-PrP gprpi BCT7_BOVIN : 180- 187: plpfp Rpgpr-PiP rpl CP18_RABIT : 126- 133: dircn Raqes-PeP tglrk ICTL_PIG : 57- 63: etvcp Rptrq-P-P elcdf INDC_BOVIN : 56- 63: eanly RlleldP-P pkdne INDC_BOVIN : 56- 64: eanly RlleldPpP kdned P15A_RABIT : 50- 57: gqplf RlleatP-P pslns P15A_RABIT : 50- 58: gqplf RlleatPpP slnsk P15B_RABIT : 50- 57: gqplf RlleatP-P pslns P15B_RABIT : 50- 58: gqplf RlleatPpP slnsk PR39_PIG : 1- 7: Rrrpr-P-P ylprp PR39_PIG : 2- 7: r Rrpr--P-P ylprp PR39_PIG : 5- 12: rrrp Rppyl-PrP rpppf PR39_PIG : 11- 16: ppylp Rprp--P-P ffppr PR39_PIG : 13- 20: ylprp RpppffP-P rlppr PR39_PIG : 21- 28: pffpp RlppriP-P gfppr PR39_PIG : 25- 32: prlpp RippgfP-P rfppr O 15: 10.9474 12( 9) P-P-x(4)-[DPS] Occurences: 12(9) BCT1_BOVIN : 63- 69: leldq PPqddeD pdspk BCT5_BOVIN : 134- 140: svrfr PPirrpP irppf BCT5_BOVIN : 167- 173: rppfr PPlgpfP grr BCT7_BOVIN : 63- 69: leldp PPkdveD rgark BCT7_BOVIN : 137- 143: rirpr PPrlprP rprpl CP18_RABIT : 25- 31: lgllm PPaiaqD ltyre ICTL_PIG : 33- 39: leldq PPkadeD pgtpk INDC_BOVIN : 63- 69: leldp PPkdneD lgtrk P15A_RABIT : 56- 62: lleat PPpslnS ksrip P15B_RABIT : 56- 62: lleat PPpslnS ksrip PR39_PIG : 6- 12: rrrpr PPylprP rpppf PR39_PIG : 14- 20: lprpr PPpffpP rlppr P 16: 10.9341 10( 9) R-x(2)-[EQR]-x-P Occurences: 10(9) BCT1_BOVIN : 87- 92: etvcs RttQqP peqcd BCT5_BOVIN : 87- 92: etdcp RtsQqP leqcd BCT7_BOVIN : 70- 75: kdved RgaRkP tsftv BCT7_BOVIN : 136- 141: rrirp RppRlP rprpr CP18_RABIT : 126- 131: dircn RaqEsP eptgl ICTL_PIG : 57- 62: etvcp RptRqP pelcd INDC_BOVIN : 87- 92: etvcp RtiQqP aeqcd P15A_RABIT : 122- 127: drdqr RqpEfP rvtrp P15B_RABIT : 122- 127: drdqr RqpEfP rvtrp PR39_PIG : 2- 7: r RrpRpP ylprp Q 17: 10.5102 19( 9) L-x(1,3)-P-x(0,2)-P Occurences: 19(9) BCT1_BOVIN : 60- 64: yrlle Ldq-P--P qdded BCT5_BOVIN : 58- 64: nlyrl LeldPt-P nddld BCT5_BOVIN : 60- 64: yrlle Ld--Pt-P nddld BCT5_BOVIN : 169- 173: pfrpp Lg--Pf-P grr BCT7_BOVIN : 58- 63: nlyrl LeldP--P pkdve BCT7_BOVIN : 58- 64: nlyrl LeldPp-P kdved BCT7_BOVIN : 60- 63: yrlle Ld--P--P pkdve BCT7_BOVIN : 60- 64: yrlle Ldp-P--P kdved BCT7_BOVIN : 60- 64: yrlle Ld--Pp-P kdved BCT7_BOVIN : 140- 145: prppr Lpr-Pr-P rplpf BCT7_BOVIN : 148- 153: prprp Lpf-Pr-P gprpi BCT7_BOVIN : 162- 167: piprp Lpf-Pr-P gprpi BCT7_BOVIN : 176- 181: piprp Lpf-Pr-P gprpi CP18_RABIT : 22- 26: llllg Llm-P--P aiaqd CP18_RABIT : 23- 26: lllgl Lm--P--P aiaqd ICTL_PIG : 30- 34: yrlle Ldq-P--P kaded INDC_BOVIN : 58- 63: nlyrl LeldP--P pkdne INDC_BOVIN : 58- 64: nlyrl LeldPp-P kdned INDC_BOVIN : 60- 63: yrlle Ld--P--P pkdne INDC_BOVIN : 60- 64: yrlle Ldp-P--P kdned INDC_BOVIN : 60- 64: yrlle Ld--Pp-P kdned P15A_RABIT : 52- 57: plfrl LeatP--P pslns P15A_RABIT : 52- 58: plfrl LeatPp-P slnsk P15B_RABIT : 52- 57: plfrl LeatP--P pslns P15B_RABIT : 52- 58: plfrl LeatPp-P slnsk PR39_PIG : 9- 14: prppy Lpr-Pr-P ppffp PR39_PIG : 9- 15: prppy Lpr-PrpP pffpp PR39_PIG : 22- 27: ffppr Lp--PriP pgfpp R 18: 10.0947 33( 9) R-x(3,4)-P-x(3)-[CGPT] Occurences: 33(9) BCT1_BOVIN : 87- 96: etvcs RttqqPpeqC dfken BCT1_BOVIN : 131- 140: nhqsi RitkqPwapP qaarl BCT5_BOVIN : 87- 96: etdcp RtsqqPleqC dfken BCT5_BOVIN : 131- 139: elqsv Rfrp-PirrP pirpp BCT5_BOVIN : 138- 147: rppir RppirPpfyP pfrpp BCT5_BOVIN : 142- 151: rrppi RppfyPpfrP pirpp BCT5_BOVIN : 150- 159: fyppf RppirPpifP pirpp BCT5_BOVIN : 154- 163: frppi RppifPpirP pfrpp BCT5_BOVIN : 162- 171: ifppi RppfrPplgP fpgrr BCT7_BOVIN : 70- 79: kdved RgarkPtsfT vketv BCT7_BOVIN : 87- 96: etvcp RtspqPpeqC dfken BCT7_BOVIN : 132- 141: lqsvr RirprPprlP rprpr BCT7_BOVIN : 136- 145: rrirp RpprlPrprP rplpf BCT7_BOVIN : 139- 147: rprpp Rlpr-PrprP lpfpr BCT7_BOVIN : 142- 151: pprlp RprprPlpfP rpgpr BCT7_BOVIN : 144- 153: rlprp RprplPfprP gprpi BCT7_BOVIN : 146- 155: prprp RplpfPrpgP rpipr BCT7_BOVIN : 152- 161: plpfp RpgprPiprP lpfpr BCT7_BOVIN : 156- 165: prpgp RpiprPlpfP rpgpr BCT7_BOVIN : 160- 169: prpip RplpfPrpgP rpipr BCT7_BOVIN : 166- 175: plpfp RpgprPiprP lpfpr BCT7_BOVIN : 170- 179: prpgp RpiprPlpfP rpgpr BCT7_BOVIN : 174- 183: prpip RplpfPrpgP rpipr BCT7_BOVIN : 180- 189: plpfp RpgprPiprP l CP18_RABIT : 126- 135: dircn RaqesPeptG lrkrl ICTL_PIG : 57- 66: etvcp RptrqPpelC dfkek INDC_BOVIN : 87- 96: etvcp RtiqqPaeqC dfkek P15A_RABIT : 128- 136: qpefp Rvtr-PagpT a P15B_RABIT : 128- 136: qpefp Rvtr-PagpT a PR39_PIG : 1- 10: RrrprPpylP rprpp PR39_PIG : 2- 10: r Rrpr-PpylP rprpp PR39_PIG : 5- 14: rrrp RppylPrprP ppffp PR39_PIG : 11- 19: ppylp Rprp-PpffP prlpp PR39_PIG : 11- 20: ppylp RprppPffpP rlppr S 19: 9.5947 39( 9) R-x(2,4)-P-x(3)-[CGPT] Occurences: 39(9) BCT1_BOVIN : 87- 96: etvcs RttqqPpeqC dfken BCT1_BOVIN : 131- 140: nhqsi RitkqPwapP qaarl BCT5_BOVIN : 87- 96: etdcp RtsqqPleqC dfken BCT5_BOVIN : 131- 139: elqsv Rfrp-PirrP pirpp BCT5_BOVIN : 137- 144: frppi Rrp--PirpP fyppf BCT5_BOVIN : 138- 147: rppir RppirPpfyP pfrpp BCT5_BOVIN : 142- 151: rrppi RppfyPpfrP pirpp BCT5_BOVIN : 150- 159: fyppf RppirPpifP pirpp BCT5_BOVIN : 154- 163: frppi RppifPpirP pfrpp BCT5_BOVIN : 162- 171: ifppi RppfrPplgP fpgrr BCT7_BOVIN : 70- 79: kdved RgarkPtsfT vketv BCT7_BOVIN : 87- 96: etvcp RtspqPpeqC dfken BCT7_BOVIN : 132- 141: lqsvr RirprPprlP rprpr BCT7_BOVIN : 134- 141: svrri Rpr--PprlP rprpr BCT7_BOVIN : 136- 145: rrirp RpprlPrprP rplpf BCT7_BOVIN : 139- 147: rprpp Rlpr-PrprP lpfpr BCT7_BOVIN : 142- 149: pprlp Rpr--PrplP fprpg BCT7_BOVIN : 142- 151: pprlp RprprPlpfP rpgpr BCT7_BOVIN : 144- 151: rlprp Rpr--PlpfP rpgpr BCT7_BOVIN : 144- 153: rlprp RprplPfprP gprpi BCT7_BOVIN : 146- 153: prprp Rpl--PfprP gprpi BCT7_BOVIN : 146- 155: prprp RplpfPrpgP rpipr BCT7_BOVIN : 152- 159: plpfp Rpg--PrpiP rplpf BCT7_BOVIN : 152- 161: plpfp RpgprPiprP lpfpr BCT7_BOVIN : 156- 163: prpgp Rpi--PrplP fprpg BCT7_BOVIN : 156- 165: prpgp RpiprPlpfP rpgpr BCT7_BOVIN : 160- 167: prpip Rpl--PfprP gprpi BCT7_BOVIN : 160- 169: prpip RplpfPrpgP rpipr BCT7_BOVIN : 166- 173: plpfp Rpg--PrpiP rplpf BCT7_BOVIN : 166- 175: plpfp RpgprPiprP lpfpr BCT7_BOVIN : 170- 177: prpgp Rpi--PrplP fprpg BCT7_BOVIN : 170- 179: prpgp RpiprPlpfP rpgpr BCT7_BOVIN : 174- 181: prpip Rpl--PfprP gprpi BCT7_BOVIN : 174- 183: prpip RplpfPrpgP rpipr BCT7_BOVIN : 180- 187: plpfp Rpg--PrpiP rpl BCT7_BOVIN : 180- 189: plpfp RpgprPiprP l CP18_RABIT : 126- 135: dircn RaqesPeptG lrkrl ICTL_PIG : 57- 66: etvcp RptrqPpelC dfkek INDC_BOVIN : 87- 96: etvcp RtiqqPaeqC dfkek P15A_RABIT : 128- 136: qpefp Rvtr-PagpT a P15B_RABIT : 128- 136: qpefp Rvtr-PagpT a PR39_PIG : 1- 10: RrrprPpylP rprpp PR39_PIG : 2- 10: r Rrpr-PpylP rprpp PR39_PIG : 3- 10: rr Rpr--PpylP rprpp PR39_PIG : 5- 14: rrrp RppylPrprP ppffp PR39_PIG : 11- 19: ppylp Rprp-PpffP prlpp PR39_PIG : 11- 20: ppylp RprppPffpP rlppr PR39_PIG : 13- 20: ylprp Rpp--PffpP rlppr PR39_PIG : 21- 28: pffpp Rlp--PripP gfppr PR39_PIG : 25- 32: prlpp Rip--PgfpP rfppr T 20: 8.3401 29( 9) P-x(2)-P Occurences: 29(9) BCT1_BOVIN : 70- 73: qdded PdsP krvsf BCT1_BOVIN : 136- 139: ritkq PwaP pqaar BCT5_BOVIN : 140- 143: pirrp PirP pfypp BCT5_BOVIN : 144- 147: ppirp PfyP pfrpp BCT5_BOVIN : 148- 151: ppfyp PfrP pirpp BCT5_BOVIN : 152- 155: ppfrp PirP pifpp BCT5_BOVIN : 156- 159: ppirp PifP pirpp BCT5_BOVIN : 160- 163: ppifp PirP pfrpp BCT5_BOVIN : 164- 167: ppirp PfrP plgpf BCT5_BOVIN : 168- 171: ppfrp PlgP fpgrr BCT7_BOVIN : 90- 93: cprts PqpP eqcdf BCT7_BOVIN : 135- 138: vrrir PrpP rlprp BCT7_BOVIN : 138- 141: irprp PrlP rprpr CP18_RABIT : 70- 73: ledak PytP qpvsf ICTL_PIG : 40- 43: kaded PgtP kpvsf INDC_BOVIN : 137- 140: lpwkw PwwP wrrg P15A_RABIT : 124- 127: dqrrq PefP rvtrp P15A_RABIT : 132- 135: prvtr PagP ta P15B_RABIT : 124- 127: dqrrq PefP rvtrp P15B_RABIT : 132- 135: prvtr PagP ta PR39_PIG : 4- 7: rrr PrpP ylprp PR39_PIG : 7- 10: rrprp PylP rprpp PR39_PIG : 12- 15: pylpr PrpP pffpp PR39_PIG : 16- 19: rprpp PffP prlpp PR39_PIG : 20- 23: ppffp PrlP pripp PR39_PIG : 24- 27: pprlp PriP pgfpp PR39_PIG : 28- 31: pprip PgfP prfpp PR39_PIG : 32- 35: ppgfp PrfP prfp PR39_PIG : 36- 39: pprfp PrfP Number of patterns evaluated by Pratt:195 Total running time: 0 seconds