------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 6 sequences from file NEUROMODULIN_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 6 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename NEUROMODULIN_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: NEUM_BOVIN 239 NEUM_CARAU 213 NEUM_CHICK 246 NEUM_HUMAN 238 NEUM_MOUSE 227 NEUM_RAT 226 Pratt run started at Thu Feb 6 20:24:38 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 166.3020 6( 6) L-C-C-x-R-R-T-K-x-V-E-K-N-x(2,3)-D-Q-x-I-x-Q-D-G-x-K-P-E-x(2)-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K 2: 162.1319 6( 6) R-R-T-K-x-V-E-K-N-x(2,3)-D-Q-x-I-x-Q-D-G-x-K-P-E-x(2)-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-x-K-x-E 3: 157.9619 6( 6) T-K-x-V-E-K-N-x(2,3)-D-Q-x-I-x-Q-D-G-x-K-P-E-x(2)-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-x-K-x-E-x-K 4: 157.4619 6( 6) T-K-x(0,1)-V-E-K-N-x(2,3)-D-Q-x-I-x-Q-D-G-x-K-P-E-x(2)-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-x-K-x-E-x-K 5: 157.4619 12( 6) R-x(0,1)-T-K-x-V-E-K-N-x(2,3)-D-Q-x-I-x-Q-D-G-x-K-P-E-x(2)-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-x-K-x-E 6: 153.7919 6( 6) K-x-V-E-K-N-x(2,3)-D-Q-x-I-x-Q-D-G-x-K-P-E-x(2)-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-x-K-x-E-x-K 7: 153.2919 6( 6) K-x(0,1)-V-E-K-N-x(2,3)-D-Q-x-I-x-Q-D-G-x-K-P-E-x(2)-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-x-K-x-E-x-K 8: 145.4518 6( 6) E-K-N-x(2,3)-D-Q-x-I-x-Q-D-G-x-K-P-E-x(2)-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-x-K-x-E-x-K 9: 145.4518 6( 6) V-x-K-N-x(2,3)-D-Q-x-I-x-Q-D-G-x-K-P-E-x(2)-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-x-K-x-E-x-K 10: 144.9518 6( 6) V-x(0,1)-K-N-x(2,3)-D-Q-x-I-x-Q-D-G-x-K-P-E-x(2)-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-x-K-x-E-x-K 11: 141.2817 6( 6) K-N-x(2,3)-D-Q-x-I-x-Q-D-G-x-K-P-E-x(2)-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-x-K-x-E-x-K 12: 136.1117 7( 6) E-x(1,2)-D-x(0,2)-Q-x-I-x-Q-D-G-x-K-P-E-x(2)-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-x-K-x-E-x-K 13: 136.1117 7( 6) E-x(2,3)-D-x(0,2)-Q-x-I-x-Q-D-G-x-K-P-E-x(2)-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-x-K-x-E-x-K 14: 132.9416 6( 6) Q-x-I-x-Q-D-G-x-K-P-E-x(2)-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-x-K-x-E-x-K-x(0,1)-D 15: 132.9416 6( 6) D-x(2)-I-x-Q-D-G-x-K-P-E-x(2)-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-x-K-x-E-x-K-x(0,1)-D 16: 128.7716 6( 6) I-x-Q-D-G-x-K-P-E-x(2)-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-x-K-x-E-x-K-x(0,1)-D 17: 127.7716 6( 6) K-x(0,2)-Q-D-G-x-K-P-E-x(2)-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-x-K-x-E-x-K-x(0,1)-D 18: 127.7716 6( 6) E-x(0,2)-Q-D-G-x-K-P-E-x(2)-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-x-K-x-E-x-K-x(0,1)-D 19: 127.2716 6( 6) D-x(1,3)-E-x(0,2)-Q-D-G-x-K-P-E-x(2)-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-x-K-x-E-x-K 20: 124.6015 6( 6) Q-D-G-x-K-P-E-x(2)-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-x-K-x-E-x-K-x(0,1)-D Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 182.3864 6( 6) L-C-C-[IM]-R-R-T-K-[PQ]-V-E-K-N-x(2,3)-D-Q-[EK]-I-[EK]-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K B 2: 181.7159 6( 6) R-R-T-K-[PQ]-V-E-K-N-x(2,3)-D-Q-[EK]-I-[EK]-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E C 3: 180.2003 6( 6) D-Q-[EK]-I-[EK]-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E-[DK]-K-x(0,1)-D-[ADGV]-[EPQ]-[AN]-[ADS]-[ET]-[AS]-[EP]-[AD] D 4: 177.5826 6( 6) T-K-x-V-E-K-N-x(2,3)-D-Q-[EK]-I-[EK]-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E-[DK]-K E 5: 177.0826 6( 6) T-K-x(0,1)-V-E-K-N-x(2,3)-D-Q-[EK]-I-[EK]-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E-[DK]-K F 6: 177.0459 12( 6) R-x(0,1)-T-K-[PQ]-V-E-K-N-x(2,3)-D-Q-[EK]-I-[EK]-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E G 7: 176.0303 6( 6) Q-[EK]-I-[EK]-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E-[DK]-K-x(0,1)-D-[ADGV]-[EPQ]-[AN]-[ADS]-[ET]-[AS]-[EP]-[AD] H 8: 175.5507 6( 6) K-x(0,1)-V-E-K-N-x(2,3)-D-Q-[EK]-I-[EK]-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E-[DK]-K-[ADG] I 9: 173.4126 6( 6) K-x-V-E-K-N-x(2,3)-D-Q-[EK]-I-[EK]-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E-[DK]-K J 10: 170.9502 6( 6) E-K-N-x(2,3)-D-Q-[EK]-I-[EK]-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E-[DK]-K-[ADG]-[DG] K 11: 170.9502 6( 6) V-x-K-N-x(2,3)-D-Q-[EK]-I-[EK]-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E-[DK]-K-[ADG]-[DG] L 12: 170.4502 6( 6) V-x(0,1)-K-N-x(2,3)-D-Q-[EK]-I-[EK]-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E-[DK]-K-[ADG]-[DG] M 13: 169.3764 6( 6) K-N-x(2,3)-D-Q-[EK]-I-[EK]-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E-[DK]-K-[ADG]-[DG]-x-[NPQ] N 14: 168.6489 6( 6) I-[EK]-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E-[DK]-K-x(0,1)-D-[ADGV]-[EPQ]-[AN]-[ADS]-[ET]-[AS]-[EP]-[AD] O 15: 167.4425 7( 6) E-x(1,2)-D-x(0,2)-Q-[EK]-I-[EK]-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E-[DK]-K-[ADG]-[DG]-x-[NPQ]-[AD] P 16: 166.4905 6( 6) Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E-[DK]-K-x(0,1)-D-[ADGV]-[EPQ]-[AN]-[ADS]-[ET]-[AS]-[EP]-[AD]-x(3)-[DEK]-[DET] Q 17: 164.4376 6( 6) K-x(0,2)-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E-[DK]-K-x(0,1)-D-[ADGV]-[EPQ]-[AN]-[ADS]-[ET]-[AS]-[EP]-[AD] R 18: 164.4376 6( 6) E-x(0,2)-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E-[DK]-K-x(0,1)-D-[ADGV]-[EPQ]-[AN]-[ADS]-[ET]-[AS]-[EP]-[AD] S 19: 164.2063 7( 6) E-x(2,3)-D-x(0,2)-Q-[EK]-I-[EK]-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E-[DK]-K-[ADG]-[DG]-x-[NPQ] T 20: 160.6285 6( 6) D-x(1,3)-E-x(0,2)-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E-[DK]-K-[ADG]-[DG]-x-[NPQ]-[AD]-[AST]-[AE]-[APS] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 182.3864 6( 6) L-C-C-[IM]-R-R-T-K-[PQ]-V-E-K-N-x(2,3)-D-Q-[EK]-I-[EK]-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K Occurences: 6(6) NEUM_BOVIN : 2- 50: m LCCMRRTKQVEKNde-DQKIEQDGiKPEDkAHKAATKIQASFRGHITRKK lkgek NEUM_CARAU : 2- 51: m LCCIRRTKPVEKNeeaDQEIKQDGtKPEEnAHKAATKIQASFRGHITRKK mkded NEUM_CHICK : 2- 51: m LCCMRRTKQVEKNedgDQKIEQDGiKPEDkAHKAATKIQASFRGHITRKK lkgek NEUM_HUMAN : 2- 50: m LCCMRRTKQVEKNdd-DQKIEQDGiKPEDkAHKAATKIQASFRGHITRKK lkgek NEUM_MOUSE : 2- 50: m LCCMRRTKQVEKNde-DQKIEQDGvKPEDkAHKAATKIQASFRGHITRKK lkgek NEUM_RAT : 2- 50: m LCCMRRTKQVEKNde-DQKIEQDGvKPEDkAHKAATKIQASFRGHITRKK lkdek B 2: 181.7159 6( 6) R-R-T-K-[PQ]-V-E-K-N-x(2,3)-D-Q-[EK]-I-[EK]-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E Occurences: 6(6) NEUM_BOVIN : 6- 54: mlccm RRTKQVEKNde-DQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGE kkgda NEUM_CARAU : 6- 55: mlcci RRTKPVEKNeeaDQEIKQDGtKPEEnAHKAATKIQASFRGHITRKKMKDE dkdge NEUM_CHICK : 6- 55: mlccm RRTKQVEKNedgDQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGE kkada NEUM_HUMAN : 6- 54: mlccm RRTKQVEKNdd-DQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGE kkddv NEUM_MOUSE : 6- 54: mlccm RRTKQVEKNde-DQKIEQDGvKPEDkAHKAATKIQASFRGHITRKKLKGE kkgda NEUM_RAT : 6- 54: mlccm RRTKQVEKNde-DQKIEQDGvKPEDkAHKAATKIQASFRGHITRKKLKDE kkgda C 3: 180.2003 6( 6) D-Q-[EK]-I-[EK]-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E-[DK]-K-x(0,1)-D-[ADGV]-[EPQ]-[AN]-[ADS]-[ET]-[AS]-[EP]-[AD] Occurences: 6(6) NEUM_BOVIN : 17- 66: eknde DQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKgDAPAAEAEA nekde NEUM_CARAU : 18- 66: kneea DQEIKQDGtKPEEnAHKAATKIQASFRGHITRKKMKDEDK-DGENDTAPD esaet NEUM_CHICK : 18- 67: knedg DQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKaDAPASESEA adkkd NEUM_HUMAN : 17- 66: ekndd DQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKdDVQAAEAEA nkkde NEUM_MOUSE : 17- 66: eknde DQKIEQDGvKPEDkAHKAATKIQASFRGHITRKKLKGEKKgDAPAAEAEA kekdd NEUM_RAT : 17- 66: eknde DQKIEQDGvKPEDkAHKAATKIQASFRGHITRKKLKDEKKgDAPAAEAEA kekdd D 4: 177.5826 6( 6) T-K-x-V-E-K-N-x(2,3)-D-Q-[EK]-I-[EK]-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E-[DK]-K Occurences: 6(6) NEUM_BOVIN : 8- 56: ccmrr TKqVEKNde-DQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKK gdapa NEUM_CARAU : 8- 57: ccirr TKpVEKNeeaDQEIKQDGtKPEEnAHKAATKIQASFRGHITRKKMKDEDK dgend NEUM_CHICK : 8- 57: ccmrr TKqVEKNedgDQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKK adapa NEUM_HUMAN : 8- 56: ccmrr TKqVEKNdd-DQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKK ddvqa NEUM_MOUSE : 8- 56: ccmrr TKqVEKNde-DQKIEQDGvKPEDkAHKAATKIQASFRGHITRKKLKGEKK gdapa NEUM_RAT : 8- 56: ccmrr TKqVEKNde-DQKIEQDGvKPEDkAHKAATKIQASFRGHITRKKLKDEKK gdapa E 5: 177.0826 6( 6) T-K-x(0,1)-V-E-K-N-x(2,3)-D-Q-[EK]-I-[EK]-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E-[DK]-K Occurences: 6(6) NEUM_BOVIN : 8- 56: ccmrr TKqVEKNde-DQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKK gdapa NEUM_CARAU : 8- 57: ccirr TKpVEKNeeaDQEIKQDGtKPEEnAHKAATKIQASFRGHITRKKMKDEDK dgend NEUM_CHICK : 8- 57: ccmrr TKqVEKNedgDQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKK adapa NEUM_HUMAN : 8- 56: ccmrr TKqVEKNdd-DQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKK ddvqa NEUM_MOUSE : 8- 56: ccmrr TKqVEKNde-DQKIEQDGvKPEDkAHKAATKIQASFRGHITRKKLKGEKK gdapa NEUM_RAT : 8- 56: ccmrr TKqVEKNde-DQKIEQDGvKPEDkAHKAATKIQASFRGHITRKKLKDEKK gdapa F 6: 177.0459 12( 6) R-x(0,1)-T-K-[PQ]-V-E-K-N-x(2,3)-D-Q-[EK]-I-[EK]-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E Occurences: 12(6) NEUM_BOVIN : 6- 54: mlccm RrTKQVEKNde-DQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGE kkgda NEUM_BOVIN : 7- 54: lccmr R-TKQVEKNde-DQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGE kkgda NEUM_CARAU : 6- 55: mlcci RrTKPVEKNeeaDQEIKQDGtKPEEnAHKAATKIQASFRGHITRKKMKDE dkdge NEUM_CARAU : 7- 55: lccir R-TKPVEKNeeaDQEIKQDGtKPEEnAHKAATKIQASFRGHITRKKMKDE dkdge NEUM_CHICK : 6- 55: mlccm RrTKQVEKNedgDQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGE kkada NEUM_CHICK : 7- 55: lccmr R-TKQVEKNedgDQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGE kkada NEUM_HUMAN : 6- 54: mlccm RrTKQVEKNdd-DQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGE kkddv NEUM_HUMAN : 7- 54: lccmr R-TKQVEKNdd-DQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGE kkddv NEUM_MOUSE : 6- 54: mlccm RrTKQVEKNde-DQKIEQDGvKPEDkAHKAATKIQASFRGHITRKKLKGE kkgda NEUM_MOUSE : 7- 54: lccmr R-TKQVEKNde-DQKIEQDGvKPEDkAHKAATKIQASFRGHITRKKLKGE kkgda NEUM_RAT : 6- 54: mlccm RrTKQVEKNde-DQKIEQDGvKPEDkAHKAATKIQASFRGHITRKKLKDE kkgda NEUM_RAT : 7- 54: lccmr R-TKQVEKNde-DQKIEQDGvKPEDkAHKAATKIQASFRGHITRKKLKDE kkgda G 7: 176.0303 6( 6) Q-[EK]-I-[EK]-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E-[DK]-K-x(0,1)-D-[ADGV]-[EPQ]-[AN]-[ADS]-[ET]-[AS]-[EP]-[AD] Occurences: 6(6) NEUM_BOVIN : 18- 66: knded QKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKgDAPAAEAEA nekde NEUM_CARAU : 19- 66: neead QEIKQDGtKPEEnAHKAATKIQASFRGHITRKKMKDEDK-DGENDTAPD esaet NEUM_CHICK : 19- 67: nedgd QKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKaDAPASESEA adkkd NEUM_HUMAN : 18- 66: knddd QKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKdDVQAAEAEA nkkde NEUM_MOUSE : 18- 66: knded QKIEQDGvKPEDkAHKAATKIQASFRGHITRKKLKGEKKgDAPAAEAEA kekdd NEUM_RAT : 18- 66: knded QKIEQDGvKPEDkAHKAATKIQASFRGHITRKKLKDEKKgDAPAAEAEA kekdd H 8: 175.5507 6( 6) K-x(0,1)-V-E-K-N-x(2,3)-D-Q-[EK]-I-[EK]-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E-[DK]-K-[ADG] Occurences: 6(6) NEUM_BOVIN : 9- 57: cmrrt KqVEKNde-DQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKG dapaa NEUM_CARAU : 9- 58: cirrt KpVEKNeeaDQEIKQDGtKPEEnAHKAATKIQASFRGHITRKKMKDEDKD gendt NEUM_CHICK : 9- 58: cmrrt KqVEKNedgDQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKA dapas NEUM_HUMAN : 9- 57: cmrrt KqVEKNdd-DQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKD dvqaa NEUM_MOUSE : 9- 57: cmrrt KqVEKNde-DQKIEQDGvKPEDkAHKAATKIQASFRGHITRKKLKGEKKG dapaa NEUM_RAT : 9- 57: cmrrt KqVEKNde-DQKIEQDGvKPEDkAHKAATKIQASFRGHITRKKLKDEKKG dapaa I 9: 173.4126 6( 6) K-x-V-E-K-N-x(2,3)-D-Q-[EK]-I-[EK]-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E-[DK]-K Occurences: 6(6) NEUM_BOVIN : 9- 56: cmrrt KqVEKNde-DQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKK gdapa NEUM_CARAU : 9- 57: cirrt KpVEKNeeaDQEIKQDGtKPEEnAHKAATKIQASFRGHITRKKMKDEDK dgend NEUM_CHICK : 9- 57: cmrrt KqVEKNedgDQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKK adapa NEUM_HUMAN : 9- 56: cmrrt KqVEKNdd-DQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKK ddvqa NEUM_MOUSE : 9- 56: cmrrt KqVEKNde-DQKIEQDGvKPEDkAHKAATKIQASFRGHITRKKLKGEKK gdapa NEUM_RAT : 9- 56: cmrrt KqVEKNde-DQKIEQDGvKPEDkAHKAATKIQASFRGHITRKKLKDEKK gdapa J 10: 170.9502 6( 6) E-K-N-x(2,3)-D-Q-[EK]-I-[EK]-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E-[DK]-K-[ADG]-[DG] Occurences: 6(6) NEUM_BOVIN : 12- 58: rtkqv EKNde-DQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKGD apaae NEUM_CARAU : 12- 59: rtkpv EKNeeaDQEIKQDGtKPEEnAHKAATKIQASFRGHITRKKMKDEDKDG endta NEUM_CHICK : 12- 59: rtkqv EKNedgDQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKAD apase NEUM_HUMAN : 12- 58: rtkqv EKNdd-DQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKDD vqaae NEUM_MOUSE : 12- 58: rtkqv EKNde-DQKIEQDGvKPEDkAHKAATKIQASFRGHITRKKLKGEKKGD apaae NEUM_RAT : 12- 58: rtkqv EKNde-DQKIEQDGvKPEDkAHKAATKIQASFRGHITRKKLKDEKKGD apaae K 11: 170.9502 6( 6) V-x-K-N-x(2,3)-D-Q-[EK]-I-[EK]-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E-[DK]-K-[ADG]-[DG] Occurences: 6(6) NEUM_BOVIN : 11- 58: rrtkq VeKNde-DQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKGD apaae NEUM_CARAU : 11- 59: rrtkp VeKNeeaDQEIKQDGtKPEEnAHKAATKIQASFRGHITRKKMKDEDKDG endta NEUM_CHICK : 11- 59: rrtkq VeKNedgDQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKAD apase NEUM_HUMAN : 11- 58: rrtkq VeKNdd-DQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKDD vqaae NEUM_MOUSE : 11- 58: rrtkq VeKNde-DQKIEQDGvKPEDkAHKAATKIQASFRGHITRKKLKGEKKGD apaae NEUM_RAT : 11- 58: rrtkq VeKNde-DQKIEQDGvKPEDkAHKAATKIQASFRGHITRKKLKDEKKGD apaae L 12: 170.4502 6( 6) V-x(0,1)-K-N-x(2,3)-D-Q-[EK]-I-[EK]-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E-[DK]-K-[ADG]-[DG] Occurences: 6(6) NEUM_BOVIN : 11- 58: rrtkq VeKNde-DQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKGD apaae NEUM_CARAU : 11- 59: rrtkp VeKNeeaDQEIKQDGtKPEEnAHKAATKIQASFRGHITRKKMKDEDKDG endta NEUM_CHICK : 11- 59: rrtkq VeKNedgDQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKAD apase NEUM_HUMAN : 11- 58: rrtkq VeKNdd-DQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKDD vqaae NEUM_MOUSE : 11- 58: rrtkq VeKNde-DQKIEQDGvKPEDkAHKAATKIQASFRGHITRKKLKGEKKGD apaae NEUM_RAT : 11- 58: rrtkq VeKNde-DQKIEQDGvKPEDkAHKAATKIQASFRGHITRKKLKDEKKGD apaae M 13: 169.3764 6( 6) K-N-x(2,3)-D-Q-[EK]-I-[EK]-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E-[DK]-K-[ADG]-[DG]-x-[NPQ] Occurences: 6(6) NEUM_BOVIN : 13- 60: tkqve KNde-DQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKGDaP aaeae NEUM_CARAU : 13- 61: tkpve KNeeaDQEIKQDGtKPEEnAHKAATKIQASFRGHITRKKMKDEDKDGeN dtapd NEUM_CHICK : 13- 61: tkqve KNedgDQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKADaP asese NEUM_HUMAN : 13- 60: tkqve KNdd-DQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKDDvQ aaeae NEUM_MOUSE : 13- 60: tkqve KNde-DQKIEQDGvKPEDkAHKAATKIQASFRGHITRKKLKGEKKGDaP aaeae NEUM_RAT : 13- 60: tkqve KNde-DQKIEQDGvKPEDkAHKAATKIQASFRGHITRKKLKDEKKGDaP aaeae N 14: 168.6489 6( 6) I-[EK]-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E-[DK]-K-x(0,1)-D-[ADGV]-[EPQ]-[AN]-[ADS]-[ET]-[AS]-[EP]-[AD] Occurences: 6(6) NEUM_BOVIN : 20- 66: dedqk IEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKgDAPAAEAEA nekde NEUM_CARAU : 21- 66: eadqe IKQDGtKPEEnAHKAATKIQASFRGHITRKKMKDEDK-DGENDTAPD esaet NEUM_CHICK : 21- 67: dgdqk IEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKaDAPASESEA adkkd NEUM_HUMAN : 20- 66: dddqk IEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKdDVQAAEAEA nkkde NEUM_MOUSE : 20- 66: dedqk IEQDGvKPEDkAHKAATKIQASFRGHITRKKLKGEKKgDAPAAEAEA kekdd NEUM_RAT : 20- 66: dedqk IEQDGvKPEDkAHKAATKIQASFRGHITRKKLKDEKKgDAPAAEAEA kekdd O 15: 167.4425 7( 6) E-x(1,2)-D-x(0,2)-Q-[EK]-I-[EK]-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E-[DK]-K-[ADG]-[DG]-x-[NPQ]-[AD] Occurences: 7(6) NEUM_BOVIN : 12- 61: rtkqv EknDedQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKGDaPA aeaea NEUM_CARAU : 15- 62: pvekn EeaD--QEIKQDGtKPEEnAHKAATKIQASFRGHITRKKMKDEDKDGeND tapde NEUM_CARAU : 16- 62: vekne Ea-D--QEIKQDGtKPEEnAHKAATKIQASFRGHITRKKMKDEDKDGeND tapde NEUM_CHICK : 15- 62: qvekn EdgD--QKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKADaPA sesea NEUM_HUMAN : 12- 61: rtkqv EknDddQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKDDvQA aeaea NEUM_MOUSE : 12- 61: rtkqv EknDedQKIEQDGvKPEDkAHKAATKIQASFRGHITRKKLKGEKKGDaPA aeaea NEUM_RAT : 12- 61: rtkqv EknDedQKIEQDGvKPEDkAHKAATKIQASFRGHITRKKLKDEKKGDaPA aeaea P 16: 166.4905 6( 6) Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E-[DK]-K-x(0,1)-D-[ADGV]-[EPQ]-[AN]-[ADS]-[ET]-[AS]-[EP]-[AD]-x(3)-[DEK]-[DET] Occurences: 6(6) NEUM_BOVIN : 22- 71: dqkie QDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKgDAPAAEAEAnekDE aavae NEUM_CARAU : 23- 71: dqeik QDGtKPEEnAHKAATKIQASFRGHITRKKMKDEDK-DGENDTAPDesaET eekee NEUM_CHICK : 23- 72: dqkie QDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKaDAPASESEAadkKD egpag NEUM_HUMAN : 22- 71: dqkie QDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKdDVQAAEAEAnkkDE apvad NEUM_MOUSE : 22- 71: dqkie QDGvKPEDkAHKAATKIQASFRGHITRKKLKGEKKgDAPAAEAEAkekDD apvad NEUM_RAT : 22- 71: dqkie QDGvKPEDkAHKAATKIQASFRGHITRKKLKDEKKgDAPAAEAEAkekDD apvad Q 17: 164.4376 6( 6) K-x(0,2)-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E-[DK]-K-x(0,1)-D-[ADGV]-[EPQ]-[AN]-[ADS]-[ET]-[AS]-[EP]-[AD] Occurences: 6(6) NEUM_BOVIN : 19- 66: ndedq KieQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKgDAPAAEAEA nekde NEUM_CARAU : 22- 66: adqei K--QDGtKPEEnAHKAATKIQASFRGHITRKKMKDEDK-DGENDTAPD esaet NEUM_CHICK : 20- 67: edgdq KieQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKaDAPASESEA adkkd NEUM_HUMAN : 19- 66: ndddq KieQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKdDVQAAEAEA nkkde NEUM_MOUSE : 19- 66: ndedq KieQDGvKPEDkAHKAATKIQASFRGHITRKKLKGEKKgDAPAAEAEA kekdd NEUM_RAT : 19- 66: ndedq KieQDGvKPEDkAHKAATKIQASFRGHITRKKLKDEKKgDAPAAEAEA kekdd R 18: 164.4376 6( 6) E-x(0,2)-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E-[DK]-K-x(0,1)-D-[ADGV]-[EPQ]-[AN]-[ADS]-[ET]-[AS]-[EP]-[AD] Occurences: 6(6) NEUM_BOVIN : 21- 66: edqki E--QDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKgDAPAAEAEA nekde NEUM_CARAU : 20- 66: eeadq EikQDGtKPEEnAHKAATKIQASFRGHITRKKMKDEDK-DGENDTAPD esaet NEUM_CHICK : 22- 67: gdqki E--QDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKaDAPASESEA adkkd NEUM_HUMAN : 21- 66: ddqki E--QDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKdDVQAAEAEA nkkde NEUM_MOUSE : 21- 66: edqki E--QDGvKPEDkAHKAATKIQASFRGHITRKKLKGEKKgDAPAAEAEA kekdd NEUM_RAT : 21- 66: edqki E--QDGvKPEDkAHKAATKIQASFRGHITRKKLKDEKKgDAPAAEAEA kekdd S 19: 164.2063 7( 6) E-x(2,3)-D-x(0,2)-Q-[EK]-I-[EK]-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E-[DK]-K-[ADG]-[DG]-x-[NPQ] Occurences: 7(6) NEUM_BOVIN : 12- 60: rtkqv Ekn-DedQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKGDaP aaeae NEUM_CARAU : 15- 61: pvekn Eea-D--QEIKQDGtKPEEnAHKAATKIQASFRGHITRKKMKDEDKDGeN dtapd NEUM_CHICK : 12- 61: rtkqv EkneDgdQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKADaP asese NEUM_CHICK : 15- 61: qvekn Edg-D--QKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKADaP asese NEUM_HUMAN : 12- 60: rtkqv EkndDd-QKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKDDvQ aaeae NEUM_HUMAN : 12- 60: rtkqv Ekn-DddQKIEQDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKDDvQ aaeae NEUM_MOUSE : 12- 60: rtkqv Ekn-DedQKIEQDGvKPEDkAHKAATKIQASFRGHITRKKLKGEKKGDaP aaeae NEUM_RAT : 12- 60: rtkqv Ekn-DedQKIEQDGvKPEDkAHKAATKIQASFRGHITRKKLKDEKKGDaP aaeae T 20: 160.6285 6( 6) D-x(1,3)-E-x(0,2)-Q-D-G-x-K-P-E-[DE]-x-A-H-K-A-A-T-K-I-Q-A-S-F-R-G-H-I-T-R-K-K-[LM]-K-[DG]-E-[DK]-K-[ADG]-[DG]-x-[NPQ]-[AD]-[AST]-[AE]-[APS] Occurences: 6(6) NEUM_BOVIN : 17- 64: eknde DqkiE--QDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKGDaPAAEA eanek NEUM_CARAU : 18- 65: kneea Dq--EikQDGtKPEEnAHKAATKIQASFRGHITRKKMKDEDKDGeNDTAP desae NEUM_CHICK : 18- 65: knedg DqkiE--QDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKADaPASES eaadk NEUM_HUMAN : 17- 64: ekndd DqkiE--QDGiKPEDkAHKAATKIQASFRGHITRKKLKGEKKDDvQAAEA eankk NEUM_MOUSE : 17- 64: eknde DqkiE--QDGvKPEDkAHKAATKIQASFRGHITRKKLKGEKKGDaPAAEA eakek NEUM_RAT : 17- 64: eknde DqkiE--QDGvKPEDkAHKAATKIQASFRGHITRKKLKDEKKGDaPAAEA eakek Number of patterns evaluated by Pratt:32848 Total running time: 6 seconds