------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 16 sequences from file NA_SOLUT_SYMP_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 16 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename NA_SOLUT_SYMP_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: NAAA_PIG 660 NAGC_HUMAN 664 NAGC_PIG 605 NAGC_RABIT 662 NAGL_HUMAN 672 NAMI_CANFA 718 NANU_RABIT 672 PANF_ECOLI 483 PANF_HAEIN 484 PUTP_ECOLI 502 PUTP_HAEIN 504 PUTP_KLEPN 160 PUTP_SALTY 502 YIDK_ECOLI 571 YJCG_ECOLI 549 YWCA_BACSU 516 Pratt run started at Thu Feb 6 20:24:21 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 15.1802 23( 16) G-x(0,1)-L-x(0,2)-G-x(3)-A 2: 14.6802 24( 16) G-x(3)-G-x(1,3)-I-x(3,5)-L 3: 12.5102 22( 16) G-x(2)-G-x(5)-G 4: 12.0102 24( 16) G-x(3)-A-x(4,5)-L 5: 12.0102 36( 16) G-x-L-x(2,3)-I 6: 12.0102 29( 16) L-x(4,5)-G-x(5)-G 7: 12.0102 28( 16) L-x(3,4)-G-A 8: 12.0102 24( 16) L-x(5)-A-x(1,2)-G 9: 12.0102 34( 16) A-x(2)-L-x(4,5)-G 10: 12.0102 31( 16) I-x(2,3)-L-x(5)-A 11: 12.0102 36( 16) A-G-x(1,2)-L 12: 12.0102 28( 16) A-x(1,2)-L-x-V 13: 12.0102 33( 16) V-x-G-x(1,2)-L 14: 12.0102 32( 16) L-x-A-x(2,3)-L 15: 12.0102 51( 16) L-x(1,2)-A-x(2)-L 16: 12.0102 43( 16) L-x(0,1)-A-G 17: 12.0102 41( 16) L-x(0,1)-A-x(2)-L 18: 12.0102 33( 16) L-x(2)-G-x(1,2)-L 19: 12.0102 42( 16) L-x(2,3)-G-x-L 20: 12.0102 43( 16) L-x(1,2)-G-x-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 17.1605 16( 16) G-x(2)-G-x-[AGIV]-x(3)-G-[FILM] B 2: 16.1582 27( 16) L-x(1,2)-A-[AGILV]-x-L-x-[AILV] C 3: 15.8877 20( 16) L-x(0,1)-A-G-x(4)-[AGNS]-x(2)-[AGILPV] D 4: 15.1802 23( 16) G-x(0,1)-L-x(0,2)-G-x(3)-A E 5: 14.6848 22( 16) L-x-[AIL]-G-x(1,2)-L F 6: 14.6802 24( 16) G-x(3)-G-x(1,3)-I-x(3,5)-L G 7: 14.6091 22( 16) V-x-G-x(1,2)-L-x-[AGV] H 8: 14.2525 23( 16) A-G-x(1,2)-L-x-[AGIV] I 9: 14.2525 30( 16) L-x(2,3)-G-x-L-x-[AGIV] J 10: 14.2003 25( 16) G-x-L-x(2,3)-I-x-[AGST] K 11: 12.0102 24( 16) G-x(3)-A-x(4,5)-L L 12: 12.0102 29( 16) L-x(4,5)-G-x(5)-G M 13: 12.0102 28( 16) L-x(3,4)-G-A N 14: 12.0102 24( 16) L-x(5)-A-x(1,2)-G O 15: 12.0102 34( 16) A-x(2)-L-x(4,5)-G P 16: 12.0102 31( 16) I-x(2,3)-L-x(5)-A Q 17: 12.0102 28( 16) A-x(1,2)-L-x-V R 18: 12.0102 32( 16) L-x-A-x(2,3)-L S 19: 12.0102 41( 16) L-x(0,1)-A-x(2)-L T 20: 12.0102 33( 16) L-x(2)-G-x(1,2)-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 17.1605 16( 16) G-x(2)-G-x-[AGIV]-x(3)-G-[FILM] Occurences: 16(16) NAAA_PIG : 86- 96: sghfv GlaGtGaasGI aiaaf NAGC_HUMAN : 86- 96: sghfv GlaGtGaasGI aiggf NAGC_PIG : 29- 39: sghfv GlaGtGaaaGI atggf NAGC_RABIT : 86- 96: sghfv GlaGtGaasGI atggf NAGL_HUMAN : 83- 93: sghfv GlaGtGaasGL avagf NAMI_CANFA : 67- 77: sehfi GlaGsGaasGF avgaw NANU_RABIT : 83- 93: sghfv GlaGtGaanGL avagf PANF_ECOLI : 64- 74: assfi GgpGaAykyGL gwvll PANF_HAEIN : 64- 74: assfv GgpGaAykyGL gwvll PUTP_ECOLI : 63- 73: gwllm GlpGaVflsGI seswi PUTP_HAEIN : 63- 73: gwllm GlpGaVylsGL vegwi PUTP_KLEPN : 63- 73: gwllm GlpGaIfisGI seswi PUTP_SALTY : 63- 73: gwllm GlpGaIflsGI seswi YIDK_ECOLI : 63- 73: teqlv GlsGqAyksGM svmgw YJCG_ECOLI : 100- 110: lvfts GydGlIyslGF lvgwp YWCA_BACSU : 64- 74: aasfl GiaGmIalyGF dgffy B 2: 16.1582 27( 16) L-x(1,2)-A-[AGILV]-x-L-x-[AILV] Occurences: 27(16) NAAA_PIG : 422- 430: aseke LliAGrLfI illiv NAAA_PIG : 423- 430: sekel Li-AGrLfI illiv NAGC_HUMAN : 177- 185: algln LylAIfLlL aital NAGC_HUMAN : 422- 430: aseke LmiAGrLfI lvlig NAGC_HUMAN : 527- 535: cgvhy LyfAIiLfA isfit NAGC_PIG : 120- 128: algld LylAIfLlL aitgl NAGC_PIG : 365- 373: aseke LmiAGrLfI lvlig NAGC_PIG : 470- 478: cgvhy LyfAIiLfV isiii NAGC_RABIT : 527- 535: cgvhy LyfAIiLfV isiit NAGL_HUMAN : 381- 389: nglrg LmlAVmLaA lmssl NAMI_CANFA : 300- 307: akgst Lm-AGfLkL lpmfi NAMI_CANFA : 480- 487: magfv Lg-AVrLtL afayr NANU_RABIT : 381- 389: nglrg LmlAVmLaA lmssl PANF_ECOLI : 84- 91: lamiq Lp-AVwLsL gilgk PANF_ECOLI : 377- 384: vitlv Lg-ALlLlA awkpp PANF_HAEIN : 403- 410: fafgg Le-AAfLwV ivlgi PUTP_ECOLI : 92- 99: winwk Lv-AGrLrV hteyn PUTP_ECOLI : 384- 391: vlvva Lv-AIaLaA npenr PUTP_HAEIN : 91- 99: ayfnw LlvAGrLrV yteln PUTP_HAEIN : 92- 99: yfnwl Lv-AGrLrV yteln PUTP_KLEPN : 92- 99: winwk Lv-AGrLrV htevn PUTP_SALTY : 92- 99: winwk Lv-AGrLrV htefn PUTP_SALTY : 384- 391: vlvva Li-AIaLaA npdnr YIDK_ECOLI : 170- 178: llvil LglAGiLyA viggl YJCG_ECOLI : 469- 477: ggwlg LitAVvLmI lgpti YWCA_BACSU : 187- 195: iikav LlmAGtLvI siivf YWCA_BACSU : 188- 195: ikavl Lm-AGtLvI siivf C 3: 15.8877 20( 16) L-x(0,1)-A-G-x(4)-[AGNS]-x(2)-[AGILPV] Occurences: 20(16) NAAA_PIG : 87- 97: ghfvg L-AGtgaaSgiA iaafe NAGC_HUMAN : 87- 97: ghfvg L-AGtgaaSgiA iggfe NAGC_PIG : 30- 40: ghfvg L-AGtgaaAgiA tggfe NAGC_RABIT : 87- 97: ghfvg L-AGtgaaSgiA tggfe NAGL_HUMAN : 84- 94: ghfvg L-AGtgaaSglA vagfe NAMI_CANFA : 68- 78: ehfig L-AGsgaaSgfA vgawe NANU_RABIT : 84- 94: ghfvg L-AGtgaaNglA vagfe PANF_ECOLI : 289- 299: mfgmh L-AGalgrAviP dltvp PANF_HAEIN : 289- 299: mlgmh L-AGalgrAviP nltvs PUTP_ECOLI : 49- 60: pfvta LsAGasdmSgwL lmglp PUTP_ECOLI : 282- 292: wmilc L-AGavavGffG iayfn PUTP_ECOLI : 431- 441: trnga L-AGmiigAltV ivwkq PUTP_HAEIN : 286- 296: wmvlc L-AGaigiGlfA ipyff PUTP_KLEPN : 49- 60: pfvta LsAGasdmSgwL lmglp PUTP_SALTY : 49- 60: pfvta LsAGasdmSgwL lmglp PUTP_SALTY : 282- 292: wmilc L-AGavavGffG iayfn PUTP_SALTY : 431- 441: trnga L-AGmiigAvtV ivwkq YIDK_ECOLI : 37- 47: qqgyf L-AGrslkApvI aaslm YJCG_ECOLI : 377- 387: vaglt L-AGasavShdL yanvf YWCA_BACSU : 188- 199: ikavl LmAGtlviSiiV fskfg D 4: 15.1802 23( 16) G-x(0,1)-L-x(0,2)-G-x(3)-A Occurences: 23(16) NAAA_PIG : 86- 93: sghfv G-La-GtgaA sgiai NAGC_HUMAN : 86- 93: sghfv G-La-GtgaA sgiai NAGC_PIG : 29- 36: sghfv G-La-GtgaA agiat NAGC_RABIT : 86- 93: sghfv G-La-GtgaA sgiat NAGL_HUMAN : 83- 90: sghfv G-La-GtgaA sglav NAGL_HUMAN : 377- 384: klmpn G-Lr-GlmlA vmlaa NAMI_CANFA : 67- 74: sehfi G-La-GsgaA sgfav NAMI_CANFA : 362- 369: klvpv G-Lr-GlmmA vmiaa NANU_RABIT : 12- 18: agsrl G-L--GdhgA lidnp NANU_RABIT : 83- 90: sghfv G-La-GtgaA nglav NANU_RABIT : 377- 384: klmpn G-Lr-GlmlA vmlaa PANF_ECOLI : 92- 99: vwlsl GiL--GkkfA ilarr PANF_ECOLI : 161- 170: ipyet GlLifGisiA lytaf PANF_HAEIN : 92- 99: vwlal GaL--GkkfA llsre PUTP_ECOLI : 58- 67: asdms GwLlmGlpgA vflsg PUTP_HAEIN : 58- 67: asdms GwLlmGlpgA vylsg PUTP_KLEPN : 58- 67: asdms GwLlmGlpgA ifisg PUTP_SALTY : 58- 67: asdms GwLlmGlpgA iflsg YIDK_ECOLI : 171- 178: lvill G-La-GilyA viggl YJCG_ECOLI : 334- 343: ykdaa GhLigGnnmA avhla YJCG_ECOLI : 353- 362: anavg GnLflGfisA vafat YJCG_ECOLI : 465- 472: gammg GwL--GlitA vvlmi YWCA_BACSU : 433- 441: sgalw GsLt-GlisA lvlvs E 5: 14.6848 22( 16) L-x-[AIL]-G-x(1,2)-L Occurences: 22(16) NAAA_PIG : 171- 177: aifik LaLGldL ylaif NAAA_PIG : 423- 428: sekel LiAGr-L fiill NAGC_HUMAN : 171- 177: aifin LaLGlnL ylaif NAGC_HUMAN : 489- 494: gafwg LiLGl-L igisr NAGC_PIG : 114- 120: aifit LaLGldL ylaif NAGC_RABIT : 489- 494: gafwg LvLGf-L igisr NAGL_HUMAN : 35- 41: aayfl LvIGvgL wsmcr NAGL_HUMAN : 107- 112: alfvv LlLGw-L fapvy NAMI_CANFA : 300- 305: akgst LmAGf-L kllpm NANU_RABIT : 35- 41: aayfl LvIGvgL wsmcr NANU_RABIT : 107- 112: alfvv LlLGw-L fapvy PANF_ECOLI : 89- 94: lpavw LsLGi-L gkkfa PANF_ECOLI : 375- 380: savit LvLGa-L lllaa PANF_ECOLI : 375- 381: savit LvLGalL llaaw PANF_HAEIN : 89- 94: vpvvw LaLGa-L gkkfa PUTP_ECOLI : 92- 97: winwk LvAGr-L rvhte PUTP_HAEIN : 19- 24: yifgm LlIGv-L ayyyt PUTP_HAEIN : 92- 97: yfnwl LvAGr-L rvyte PUTP_KLEPN : 92- 97: winwk LvAGr-L rvhte PUTP_SALTY : 92- 97: winwk LvAGr-L rvhte YIDK_ECOLI : 197- 202: ingig LvIGg-L mvpvf YJCG_ECOLI : 265- 271: dpisa LsLGlgL mfgta YWCA_BACSU : 188- 193: ikavl LmAGt-L visii F 6: 14.6802 24( 16) G-x(3)-G-x(1,3)-I-x(3,5)-L Occurences: 24(16) NAAA_PIG : 484- 497: rvneq GafwGli-IgfvmgL irmia NAGC_HUMAN : 356- 369: cekyc GtkvGctnIaypt-L vvelm NAGC_HUMAN : 484- 494: rvnep GafwGl--Ilgl--L igisr NAGC_PIG : 299- 312: cekyc GtkvGcsnIaypt-L vvelm NAGC_PIG : 427- 440: rvnee GafwGlv-IgcmigL armit NAGC_RABIT : 356- 369: ceryc GtrvGctnIafpt-L vvelm NAGL_HUMAN : 356- 369: crrvc GtevGcsnIaypr-L vvklm NAGL_HUMAN : 484- 494: rvneq GafwGl--Iggl--L mglar NAMI_CANFA : 341- 354: cmqvc GsraGcsnIaypr-L vmklv NANU_RABIT : 356- 369: ckrvc GtevGcsnIaypr-L vvklm NANU_RABIT : 483- 493: rvnek GafwGl--Iggl--L mglar PANF_ECOLI : 272- 283: kavhr GiiiGt--Ivvai-L mfgmh PANF_HAEIN : 466- 479: iaflv GnklGerrIektq-L kvtal PUTP_ECOLI : 81- 92: swiai GltlGaw-Inwk--L vagrl PUTP_ECOLI : 429- 439: rmtrn GalaGm--Iiga--L tvivw PUTP_ECOLI : 458- 471: yeiip GfifGsigIvvfs-L lgkap PUTP_ECOLI : 458- 472: yeiip GfifGsigIvvfslL gkaps PUTP_HAEIN : 72- 82: avyls GlveGw--Iaig--L tigay PUTP_KLEPN : 81- 92: swiai GltlGaw-Inwk--L vagrl PUTP_SALTY : 81- 92: swiai GltlGaw-Inwk--L vagrl PUTP_SALTY : 458- 471: yeiip GfifGslgIvifs-L lgkaa PUTP_SALTY : 458- 472: yeiip GfifGslgIvifslL gkaat YIDK_ECOLI : 378- 391: qlvtv GrkfGff-IaivsvL vapwi YJCG_ECOLI : 109- 120: liysl GflvGwp-Iilf--L iaerl YJCG_ECOLI : 464- 475: rgamm GgwlGl--Itavv-L milgp YWCA_BACSU : 433- 444: sgalw GsltGl--Isalv-L vsmsp G 7: 14.6091 22( 16) V-x-G-x(1,2)-L-x-[AGV] Occurences: 22(16) NAAA_PIG : 55- 62: tnrgt VgGffLaG rdvtw NAGC_HUMAN : 55- 62: tnrgt VgGffLaG rsmvw NAGC_HUMAN : 111- 117: lvlvv VlGw-LfV piyik NAGC_PIG : 54- 60: liwvv VlGw-LfV piyik NAGC_RABIT : 55- 62: tnrgt VgGffLaG rsmvw NAGC_RABIT : 490- 496: afwgl VlGf-LiG isrmi NAGL_HUMAN : 52- 59: tnrgt VgGyfLaG rsmvw NAGL_HUMAN : 190- 196: tmiyt VtGg-LaA lmytd NAMI_CANFA : 36- 43: snrst VsGyfLaG rsmtw NAMI_CANFA : 174- 180: tallt VtGg-LvA viytd NANU_RABIT : 52- 59: tnrgt VgGyfLaG rsmvw NANU_RABIT : 190- 196: tmvyt VtGg-LaA lmytd PANF_ECOLI : 431- 437: lsami VgGv-LyA vlatl PANF_HAEIN : 320- 327: vlppi VaGifLaA pmsai PUTP_ECOLI : 93- 99: inwkl VaGr-LrV hteyn PUTP_HAEIN : 93- 99: fnwll VaGr-LrV yteln PUTP_KLEPN : 93- 99: inwkl VaGr-LrV htevn PUTP_SALTY : 93- 99: inwkl VaGr-LrV htefn YIDK_ECOLI : 179- 185: gilya ViGg-LrA mavad YIDK_ECOLI : 198- 204: ngigl ViGg-LmV pvfgl YJCG_ECOLI : 372- 379: tilav VaGltLaG asavs YWCA_BACSU : 340- 347: tilav VtGlvLsA asafa H 8: 14.2525 23( 16) A-G-x(1,2)-L-x-[AGIV] Occurences: 23(16) NAAA_PIG : 425- 430: kelli AGr-LfI illiv NAGC_HUMAN : 425- 430: kelmi AGr-LfI lvlig NAGC_PIG : 368- 373: kelmi AGr-LfI lvlig NAGC_RABIT : 312- 318: lshvk AGciLcG ylkvm NAGL_HUMAN : 312- 318: lthik AGciLcG ylklt NAMI_CANFA : 476- 482: fyggm AGfvLgA vrltl NANU_RABIT : 312- 318: lthik AGciLcG ylklt PANF_ECOLI : 321- 327: lppfa AGifLaA pmaai PANF_HAEIN : 321- 327: lppiv AGifLaA pmsai PUTP_ECOLI : 94- 99: nwklv AGr-LrV hteyn PUTP_ECOLI : 327- 333: fnpwi AGilLsA ilaav PUTP_HAEIN : 94- 99: nwllv AGr-LrV yteln PUTP_HAEIN : 331- 337: fnpwi AGilLsA ilaav PUTP_HAEIN : 436- 441: ssgam AGm-LvG avtvf PUTP_KLEPN : 94- 99: nwklv AGr-LrV htevn PUTP_SALTY : 94- 99: nwklv AGr-LrV htefn PUTP_SALTY : 327- 333: fnpwi AGvlLsA ilaav YIDK_ECOLI : 38- 44: qgyfl AGrsLkA pviaa YIDK_ECOLI : 173- 178: illgl AGi-LyA viggl YJCG_ECOLI : 333- 338: eykda AGh-LiG gnnma YJCG_ECOLI : 373- 379: ilavv AGltLaG asavs YWCA_BACSU : 39- 45: sefyt AGggLtG vqngl YWCA_BACSU : 190- 195: avllm AGt-LvI siivf I 9: 14.2525 30( 16) L-x(2,3)-G-x-L-x-[AGIV] Occurences: 30(16) NAAA_PIG : 422- 430: aseke LliaGrLfI illiv NAAA_PIG : 423- 430: sekel Lia-GrLfI illiv NAGC_HUMAN : 422- 430: aseke LmiaGrLfI lvlig NAGC_HUMAN : 489- 496: gafwg Lil-GlLiG isrmi NAGC_PIG : 365- 373: aseke LmiaGrLfI lvlig NAGC_RABIT : 489- 496: gafwg Lvl-GfLiG isrmi NAGL_HUMAN : 107- 114: alfvv Lll-GwLfA pvylt NAGL_HUMAN : 422- 430: agdre LllvGrLwV vfivv NAGL_HUMAN : 423- 430: gdrel Llv-GrLwV vfivv NAGL_HUMAN : 489- 496: gafwg Lig-GlLmG larli NAMI_CANFA : 143- 150: klsvd Lys-GaLfI qeslg NAMI_CANFA : 172- 180: gmtal LtvtGgLvA viytd NANU_RABIT : 107- 114: alfvv Lll-GwLfA pvylt NANU_RABIT : 421- 429: agege LllvGrLwV vfiva NANU_RABIT : 422- 429: gegel Llv-GrLwV vfiva NANU_RABIT : 488- 495: gafwg Lig-GlLmG larli PANF_ECOLI : 397- 405: iiwln LlafGgLeA vflwp PANF_ECOLI : 398- 405: iwlnl Laf-GgLeA vflwp PANF_HAEIN : 269- 276: kdska Lhr-GmLiG tivls PANF_HAEIN : 397- 405: iiwln LfafGgLeA aflwv PUTP_ECOLI : 92- 99: winwk Lva-GrLrV hteyn PUTP_HAEIN : 91- 99: ayfnw LlvaGrLrV yteln PUTP_HAEIN : 92- 99: yfnwl Lva-GrLrV yteln PUTP_KLEPN : 92- 99: winwk Lva-GrLrV htevn PUTP_SALTY : 92- 99: winwk Lva-GrLrV htefn YIDK_ECOLI : 170- 178: llvil LglaGiLyA viggl YIDK_ECOLI : 197- 204: ingig Lvi-GgLmV pvfgl YJCG_ECOLI : 149- 157: gpiri LsacGsLvV valyl YWCA_BACSU : 187- 195: iikav LlmaGtLvI siivf YWCA_BACSU : 188- 195: ikavl Lma-GtLvI siivf J 10: 14.2003 25( 16) G-x-L-x(2,3)-I-x-[AGST] Occurences: 25(16) NAAA_PIG : 195- 203: iytit GgLasvIyT dtlqt NAAA_PIG : 450- 458: qvaqn GqLfhyIeS issyl NAGC_HUMAN : 195- 203: lytit GgLaavIyT dtlqt NAGC_HUMAN : 450- 458: qsaqs GqLfdyIqS itsyl NAGC_PIG : 138- 146: lytit GgLaavIyT dtlqt NAGC_PIG : 393- 401: qsaqs GqLfdyIqS vtsyl NAGC_RABIT : 195- 203: lytit GgLaavIyT dtlqt NAGC_RABIT : 450- 458: qsaqs GqLfdyIqS itsyl NAGL_HUMAN : 450- 458: qaaqg GqLfdyIqA vssyl NAMI_CANFA : 176- 184: lltvt GgLvavIyT dtlqa NAMI_CANFA : 195- 203: llmiv GaLtlmIiS mmeig NANU_RABIT : 449- 457: qaaqg GqLfdyIqS vssyl NANU_RABIT : 537- 544: lffcs GlLii-IvS lctap PANF_ECOLI : 424- 432: ranak GaLsamIvG gvlya PANF_HAEIN : 424- 432: kanay GaLssmIiG lgsyi PUTP_ECOLI : 328- 336: npwia GiLlsaIlA avmst PUTP_ECOLI : 429- 437: rmtrn GaLagmIiG altvi PUTP_HAEIN : 332- 340: npwia GiLlsaIlA avmst PUTP_KLEPN : 144- 151: lyrhd GaLcg-IgS rhaqr PUTP_SALTY : 328- 336: npwia GvLlsaIlA avmst PUTP_SALTY : 429- 437: rmtrn GaLagmIiG avtvi PUTP_SALTY : 462- 470: pgfif GsLgivIfS llgka YIDK_ECOLI : 174- 182: llgla GiLyavIgG lrama YJCG_ECOLI : 465- 472: gammg GwLgl-ItA vvlmi YWCA_BACSU : 433- 441: sgalw GsLtglIsA lvlvs K 11: 12.0102 24( 16) G-x(3)-A-x(4,5)-L Occurences: 24(16) NAAA_PIG : 464- 473: issyl GppiAavfl-L aifck NAGC_HUMAN : 464- 473: itsyl GppiAavfl-L aifwk NAGC_PIG : 407- 416: vtsyl GppiAavfl-L aifck NAGC_RABIT : 464- 473: itsyl GppiAavfl-L aifwk NAGL_HUMAN : 380- 390: pnglr GlmlAvmlaaL mssla NAMI_CANFA : 365- 375: pvglr GlmmAvmiaaL msdld NANU_RABIT : 380- 390: pnglr GlmlAvmlaaL mssla PANF_ECOLI : 64- 74: assfi GgpgAaykygL gwvll PANF_ECOLI : 65- 74: ssfig GpgaAykyg-L gwvll PANF_ECOLI : 401- 411: nllaf GgleAvflwpL vlgly PANF_ECOLI : 433- 442: amivg GvlyAvlat-L niqyl PANF_HAEIN : 64- 74: assfv GgpgAaykygL gwvll PANF_HAEIN : 65- 74: ssfvg GpgaAykyg-L gwvll PUTP_ECOLI : 407- 417: syawa GfgaAfgpvvL fsvmw PUTP_HAEIN : 63- 73: gwllm GlpgAvylsgL vegwi PUTP_HAEIN : 411- 421: efawa GfgsAfgpvvL fslfw PUTP_KLEPN : 150- 159: alcgi GsrhAqrhf-L h PUTP_SALTY : 407- 417: syawa GfgaAfgpvvL fsvmw YIDK_ECOLI : 174- 183: llgla GilyAvigg-L ramav YIDK_ECOLI : 278- 288: kslae GqkgAlltavL kmldp YIDK_ECOLI : 382- 391: vgrkf GffiAivsv-L vapwi YJCG_ECOLI : 468- 478: mggwl GlitAvvlmiL gptiw YWCA_BACSU : 82- 91: ffysi GflvAylvv-L yivae YWCA_BACSU : 479- 489: isipl GflgAwlgtvL ssdkt L 12: 12.0102 29( 16) L-x(4,5)-G-x(5)-G Occurences: 29(16) NAAA_PIG : 74- 86: pmgas LfasniGsghfvG lagtg NAGC_HUMAN : 74- 86: pigas LfasniGsghfvG lagtg NAGC_PIG : 17- 29: pvgas LfasyiGsghfvG lagtg NAGC_PIG : 126- 138: ylaif LllaitGlytitG glaav NAGC_PIG : 127- 138: laifl Llait-GlytitG glaav NAGC_RABIT : 74- 86: pigas LfasniGsghfvG lagtg NAGC_RABIT : 184- 195: vaiii Llvit-GlytitG glaav NAGL_HUMAN : 71- 83: pvgas LfasniGsghfvG lagtg NAMI_CANFA : 55- 67: aigas LfvsniGsehfiG lagsg NANU_RABIT : 71- 83: pvgas LfasniGsghfvG lagtg PANF_ECOLI : 33- 45: stgtf LneyflGsrsmgG ivlam PANF_ECOLI : 149- 161: iggar LletaaGipyetG llifg PANF_ECOLI : 150- 161: ggarl Letaa-GipyetG llifg PANF_ECOLI : 183- 195: frasv LndtmqGlvmliG tvvll PANF_HAEIN : 33- 45: tkgdf LteyyvGnrsmtG fvlam PANF_HAEIN : 164- 176: tqall LfaltvGiytfiG gfrav PANF_HAEIN : 183- 195: fravv LtdtiqGtvmifG tiill PUTP_ECOLI : 60- 72: dmsgw LlmglpGavflsG isesw PUTP_ECOLI : 61- 72: msgwl Lmglp-GavflsG isesw PUTP_HAEIN : 60- 72: dmsgw LlmglpGavylsG lvegw PUTP_HAEIN : 61- 72: msgwl Lmglp-GavylsG lvegw PUTP_KLEPN : 60- 72: dmsgw LlmglpGaifisG isesw PUTP_KLEPN : 61- 72: msgwl Lmglp-GaifisG isesw PUTP_KLEPN : 139- 150: hiaci Lyrhd-GalcgiG srhaq PUTP_SALTY : 60- 72: dmsgw LlmglpGaiflsG isesw PUTP_SALTY : 61- 72: msgwl Lmglp-GaiflsG isesw YIDK_ECOLI : 61- 72: lsteq Lvgls-GqayksG msvmg YJCG_ECOLI : 347- 358: maavh Lanav-GgnlflG fisav YWCA_BACSU : 71- 82: agmia Lygfd-GffysiG flvay M 13: 12.0102 28( 16) L-x(3,4)-G-A Occurences: 28(16) NAAA_PIG : 87- 92: ghfvg Lagt-GA asgia NAGC_HUMAN : 87- 92: ghfvg Lagt-GA asgia NAGC_HUMAN : 612- 617: dlfcg Leqh-GA pkmte NAGC_PIG : 30- 35: ghfvg Lagt-GA aagia NAGC_RABIT : 87- 92: ghfvg Lagt-GA asgia NAGL_HUMAN : 84- 89: ghfvg Lagt-GA asgla NAMI_CANFA : 68- 73: ehfig Lags-GA asgfa NAMI_CANFA : 190- 196: dtlqa LlmivGA ltlmi NAMI_CANFA : 191- 196: tlqal Lmiv-GA ltlmi NANU_RABIT : 13- 18: gsrlg Lgdh-GA lidnp NANU_RABIT : 84- 89: ghfvg Lagt-GA angla PANF_ECOLI : 132- 138: aslsl LvafvGA mtvqf PANF_ECOLI : 224- 230: tidpq LvtpqGA ddils PANF_HAEIN : 13- 19: pliiy LtfvfGA aifay PUTP_ECOLI : 61- 67: msgwl LmglpGA vflsg PUTP_ECOLI : 280- 285: mtwmi Lcla-GA vavgf PUTP_HAEIN : 61- 67: msgwl LmglpGA vylsg PUTP_HAEIN : 284- 289: mgwmv Lcla-GA igigl PUTP_KLEPN : 61- 67: msgwl LmglpGA ifisg PUTP_KLEPN : 139- 145: hiaci LyrhdGA lcgig PUTP_SALTY : 61- 67: msgwl LmglpGA iflsg PUTP_SALTY : 280- 285: mtwmi Lcla-GA vavgf YIDK_ECOLI : 155- 161: hvges LqishGA aiwll YJCG_ECOLI : 214- 219: iikav Lllf-GA sfmaf YJCG_ECOLI : 375- 380: avvag Ltla-GA savsh YJCG_ECOLI : 456- 461: mywsk Lttr-GA mmggw YWCA_BACSU : 139- 144: ymiaq Lvga-GA likll YWCA_BACSU : 478- 483: iisip Lgfl-GA wlgtv N 14: 12.0102 24( 16) L-x(5)-A-x(1,2)-G Occurences: 24(16) NAAA_PIG : 87- 95: ghfvg LagtgaAs-G iaiaa NAGC_HUMAN : 87- 95: ghfvg LagtgaAs-G iaigg NAGC_PIG : 30- 38: ghfvg LagtgaAa-G iatgg NAGC_RABIT : 87- 95: ghfvg LagtgaAs-G iatgg NAGL_HUMAN : 84- 92: ghfvg LagtgaAs-G lavag NAGL_HUMAN : 441- 449: vsvaw LpvvqaAq-G gqlfd NAGL_HUMAN : 441- 450: vsvaw LpvvqaAqgG qlfdy NAMI_CANFA : 68- 76: ehfig LagsgaAs-G favga NANU_RABIT : 84- 92: ghfvg LagtgaAn-G lavag NANU_RABIT : 440- 448: vsvaw LpvvqaAq-G gqlfd NANU_RABIT : 440- 449: vsvaw LpvvqaAqgG qlfdy PANF_ECOLI : 200- 208: gtvvl LigvvhAa-G glsna PANF_ECOLI : 200- 209: gtvvl LigvvhAagG lsnav PANF_HAEIN : 200- 208: gtiil LigtiyAl-G gvesa PANF_HAEIN : 200- 209: gtiil LigtiyAlgG vesav PUTP_ECOLI : 398- 407: penrv LglvsyAwaG fgaaf PUTP_ECOLI : 400- 409: nrvlg LvsyawAgfG aafgp PUTP_HAEIN : 73- 81: vylsg LvegwiAi-G ltiga PUTP_HAEIN : 240- 249: tsttp LgllslAawG lgyfg PUTP_HAEIN : 402- 411: enskv LklvefAwaG fgsaf PUTP_HAEIN : 404- 413: skvlk LvefawAgfG safgp PUTP_KLEPN : 139- 148: hiaci LyrhdgAlcG igsrh PUTP_SALTY : 398- 407: pdnrv LglvsyAwaG fgaaf PUTP_SALTY : 400- 409: nrvlg LvsyawAgfG aafgp YIDK_ECOLI : 172- 181: villg LagilyAviG glram YIDK_ECOLI : 270- 278: ivqrt LaskslAe-G qkgal YJCG_ECOLI : 501- 510: yeypa LfsitvAflG iwffs YWCA_BACSU : 288- 297: imtvf LgfgaaAfvG fdait O 15: 12.0102 34( 16) A-x(2)-L-x(4,5)-G Occurences: 34(16) NAAA_PIG : 105- 113: afewn AllLllvl-G wffvp NAGC_HUMAN : 105- 113: gfewn AlvLvvvl-G wlfvp NAGC_PIG : 123- 132: ldlyl AifLllaitG lytit NAGC_RABIT : 304- 313: qrcls AknLshvkaG cilcg NAGL_HUMAN : 31- 40: ilvia AyfLlvigvG lwsmc NAGL_HUMAN : 530- 538: hylyf AivLffcs-G lltlt NAMI_CANFA : 86- 94: awefn AllLlqll-G wvfip NAMI_CANFA : 515- 523: hymyv AtaLfwvt-G litvi NANU_RABIT : 31- 40: iavia AyfLlvigvG lwsmc NANU_RABIT : 529- 537: hylyf AivLffcs-G lliii PANF_ECOLI : 86- 95: miqlp AvwLslgilG kkfai PANF_ECOLI : 147- 155: qfigg ArlLetaa-G ipyet PANF_ECOLI : 180- 189: fggfr AsvLndtmqG lvmli PANF_ECOLI : 405- 414: fggle AvfLwplvlG lywer PANF_HAEIN : 147- 155: qfigg ArlLetti-G isytq PANF_HAEIN : 161- 170: isytq AllLfaltvG iytfi PANF_HAEIN : 180- 189: iggfr AvvLtdtiqG tvmif PANF_HAEIN : 405- 414: fggle AafLwvivlG iywdk PUTP_ECOLI : 107- 116: eynnn AltLpdyftG rfedk PUTP_ECOLI : 170- 178: wagaa AtiLytfi-G gflav PUTP_ECOLI : 170- 179: wagaa AtiLytfigG flavs PUTP_HAEIN : 67- 76: mglpg AvyLsglveG wiaig PUTP_KLEPN : 136- 144: vvkhi AciLyrhd-G alcgi PUTP_SALTY : 107- 116: efnnn AltLpdyftG rfedk YIDK_ECOLI : 162- 171: ishga AiwLlvillG lagil YIDK_ECOLI : 173- 181: illgl AgiLyavi-G glram YIDK_ECOLI : 173- 182: illgl AgiLyavigG lrama YIDK_ECOLI : 229- 237: lttvh AekLnsig-G ptdpl YJCG_ECOLI : 159- 168: slvvv AlyLiaqmvG agkli YJCG_ECOLI : 169- 178: aqmvg AgkLiellfG lnyhi YJCG_ECOLI : 344- 352: gnnma AvhLanav-G gnlfl YJCG_ECOLI : 344- 353: gnnma AvhLanavgG nlflg YJCG_ECOLI : 366- 374: savaf AtiLavva-G ltlag YWCA_BACSU : 142- 151: aqlvg AgaLiklllG ldyta YWCA_BACSU : 311- 320: qagnm AapLlakalG gdflf YWCA_BACSU : 312- 320: agnma AplLakal-G gdflf YWCA_BACSU : 312- 321: agnma AplLakalgG dflfa YWCA_BACSU : 334- 342: saiaf AtiLavvt-G lvlsa P 16: 12.0102 31( 16) I-x(2,3)-L-x(5)-A Occurences: 31(16) NAAA_PIG : 334- 344: vmpgm IsriLytekvA cvvps NAAA_PIG : 459- 469: hyies IssyLgppiaA vflla NAGC_HUMAN : 334- 344: vmpgm IsriLytekiA cvvps NAGC_HUMAN : 430- 439: agrlf Ilv-LigisiA wvpiv NAGC_HUMAN : 459- 469: dyiqs ItsyLgppiaA vflla NAGC_PIG : 277- 287: vmpgm IsrvLytekiA ctvps NAGC_PIG : 373- 382: agrlf Ilv-LigisiA wvpiv NAGC_RABIT : 459- 469: dyiqs ItsyLgppiaA vflla NAGL_HUMAN : 166- 176: sgavf IqqaLgwniyA svial NAGL_HUMAN : 334- 344: vmpgm IsriLypdevA cvvpe NAMI_CANFA : 319- 329: vvpgm IsriLfaddiA cinpe NANU_RABIT : 166- 176: sgavf IqqaLgwniyA svial NANU_RABIT : 334- 344: vmpgm IsriLypdevA cvape PANF_ECOLI : 220- 230: qtlqt IdpqLvtpqgA ddils PANF_ECOLI : 452- 462: lgfhp IvpsLllsllA flvgn PANF_HAEIN : 10- 19: iilpl Iiy-LtfvfgA aifay PANF_HAEIN : 197- 206: mifgt Iil-LigtiyA lggve PANF_HAEIN : 204- 213: lligt Iya-LggvesA vnklt PANF_HAEIN : 452- 462: fnfhq IvpsLvfgliA flvgn PUTP_ECOLI : 326- 336: lfnpw IagiLlsailA avmst PUTP_HAEIN : 15- 25: tftiy IfgmLligvlA yyytn PUTP_HAEIN : 330- 340: lfnpw IagiLlsailA avmst PUTP_HAEIN : 381- 390: vwlgr Imv-LviaalA iwiaq PUTP_KLEPN : 135- 145: rvvkh IaciLyrhdgA lcgig PUTP_SALTY : 326- 336: lfnpw IagvLlsailA avmst PUTP_SALTY : 468- 478: slgiv IfslLgkaatA amqer YIDK_ECOLI : 168- 178: iwllv IllgLagilyA viggl YIDK_ECOLI : 180- 189: ilyav Igg-LramavA dsing YIDK_ECOLI : 387- 397: gffia IvsvLvapwiA napqg YJCG_ECOLI : 407- 416: lrvsk Itv-LilgviA iilgv YWCA_BACSU : 146- 156: gagal IkllLgldytA avliv Q 17: 12.0102 28( 16) A-x(1,2)-L-x-V Occurences: 28(16) NAAA_PIG : 365- 370: gcsny AypLlV melmp NAGC_HUMAN : 105- 110: gfewn AlvLvV vlgwl NAGC_PIG : 473- 478: hylyf AiiLfV isiii NAGC_RABIT : 530- 535: hylyf AiiLfV isiit NAGL_HUMAN : 31- 36: ilvia AyfLlV igvgl NAGL_HUMAN : 90- 95: agtga AsgLaV agfew NAGL_HUMAN : 237- 242: kylga AtsLtV sedpa NAGL_HUMAN : 439- 443: vvvsv Aw-LpV vqaaq NAMI_CANFA : 53- 57: wvaig As-LfV snigs NAMI_CANFA : 170- 174: ligmt Al-LtV tgglv NANU_RABIT : 31- 36: iavia AyfLlV igvgl NANU_RABIT : 90- 95: agtga AngLaV agfew NANU_RABIT : 438- 442: vavsv Aw-LpV vqaaq PANF_ECOLI : 11- 15: ilplv Ay-LvV vfgis PANF_HAEIN : 405- 410: fggle AafLwV ivlgi PANF_HAEIN : 406- 410: gglea Af-LwV ivlgi PUTP_ECOLI : 94- 99: nwklv AgrLrV hteyn PUTP_HAEIN : 94- 99: nwllv AgrLrV yteln PUTP_KLEPN : 94- 99: nwklv AgrLrV htevn PUTP_SALTY : 94- 99: nwklv AgrLrV htefn YIDK_ECOLI : 162- 167: ishga AiwLlV illgl YJCG_ECOLI : 366- 371: savaf AtiLaV vaglt YJCG_ECOLI : 416- 421: ilgvi AiiLgV lfenq YWCA_BACSU : 86- 90: igflv Ay-LvV lyiva YWCA_BACSU : 156- 161: gldyt AavLiV gvlmt YWCA_BACSU : 157- 161: ldyta Av-LiV gvlmt YWCA_BACSU : 334- 339: saiaf AtiLaV vtglv YWCA_BACSU : 392- 397: llaif AqsLnV aflva R 18: 12.0102 32( 16) L-x-A-x(2,3)-L Occurences: 32(16) NAAA_PIG : 423- 428: sekel LiAgr-L fiill NAGC_HUMAN : 184- 190: laifl LlAitaL ytitg NAGC_PIG : 127- 133: laifl LlAitgL ytitg NAGC_RABIT : 302- 307: ivqrc LsAkn-L shvka NAGL_HUMAN : 112- 118: lllgw LfApvyL tagvi NAGL_HUMAN : 234- 240: lfdky LgAatsL tvsed NAMI_CANFA : 300- 305: akgst LmAgf-L kllpm NAMI_CANFA : 480- 485: magfv LgAvr-L tlafa NAMI_CANFA : 702- 708: ilnig LfAvcsL gifmf NANU_RABIT : 112- 118: lllgw LfApvyL tagvi NANU_RABIT : 572- 577: eered LdAde-L eapas PANF_ECOLI : 78- 84: glgwv LlAmiqL pavwl PANF_ECOLI : 84- 89: lamiq LpAvw-L slgil PANF_ECOLI : 377- 382: vitlv LgAll-L laawk PANF_ECOLI : 377- 383: vitlv LgAlllL aawkp PANF_ECOLI : 397- 403: iiwln LlAfggL eavfl PANF_ECOLI : 403- 408: lafgg LeAvf-L wplvl PANF_HAEIN : 397- 403: iiwln LfAfggL eaafl PANF_HAEIN : 403- 408: fafgg LeAaf-L wvivl PUTP_ECOLI : 92- 97: winwk LvAgr-L rvhte PUTP_ECOLI : 384- 389: vlvva LvAia-L aanpe PUTP_HAEIN : 92- 97: yfnwl LvAgr-L rvyte PUTP_HAEIN : 245- 250: lglls LaAwg-L gyfgq PUTP_HAEIN : 346- 351: avmst LsAql-L issss PUTP_KLEPN : 92- 97: winwk LvAgr-L rvhte PUTP_SALTY : 92- 97: winwk LvAgr-L rvhte PUTP_SALTY : 384- 389: vlvva LiAia-L aanpd YIDK_ECOLI : 301- 306: lvlpg LiAfh-L yqdlp YJCG_ECOLI : 120- 125: piilf LiAer-L rnlgr YJCG_ECOLI : 149- 155: gpiri LsAcgsL vvval YWCA_BACSU : 188- 193: ikavl LmAgt-L visii YWCA_BACSU : 220- 225: ktatp LgAdf-L npgnk YWCA_BACSU : 314- 319: nmaap LlAka-L ggdfl S 19: 12.0102 41( 16) L-x(0,1)-A-x(2)-L Occurences: 41(16) NAAA_PIG : 171- 175: aifik L-AlgL dlyla NAAA_PIG : 423- 428: sekel LiAgrL fiill NAAA_PIG : 542- 546: silvv L-AisL ltkpi NAGC_HUMAN : 171- 175: aifin L-AlgL nlyla NAGC_HUMAN : 179- 183: glnly L-AifL llait NAGC_PIG : 114- 118: aifit L-AlgL dlyla NAGC_PIG : 122- 126: gldly L-AifL llait NAGC_RABIT : 302- 307: ivqrc LsAknL shvka NAGL_HUMAN : 383- 387: lrglm L-AvmL aalms NAMI_CANFA : 300- 305: akgst LmAgfL kllpm NAMI_CANFA : 480- 485: magfv LgAvrL tlafa NANU_RABIT : 383- 387: lrglm L-AvmL aalms NANU_RABIT : 572- 577: eered LdAdeL eapas PANF_ECOLI : 48- 52: mggiv L-AmtL tatyi PANF_ECOLI : 84- 89: lamiq LpAvwL slgil PANF_ECOLI : 289- 293: mfgmh L-AgaL gravi PANF_ECOLI : 377- 382: vitlv LgAllL laawk PANF_ECOLI : 403- 408: lafgg LeAvfL wplvl PANF_HAEIN : 129- 133: vwlss L-AllL affaa PANF_HAEIN : 289- 293: mlgmh L-AgaL gravi PANF_HAEIN : 403- 408: fafgg LeAafL wvivl PUTP_ECOLI : 92- 97: winwk LvAgrL rvhte PUTP_ECOLI : 317- 321: rvfie L-AqiL fnpwi PUTP_ECOLI : 384- 389: vlvva LvAiaL aanpe PUTP_HAEIN : 92- 97: yfnwl LvAgrL rvyte PUTP_HAEIN : 245- 250: lglls LaAwgL gyfgq PUTP_HAEIN : 321- 325: qvfie L-AklL fnpwi PUTP_HAEIN : 346- 351: avmst LsAqlL issss PUTP_KLEPN : 92- 97: winwk LvAgrL rvhte PUTP_SALTY : 92- 97: winwk LvAgrL rvhte PUTP_SALTY : 317- 321: rvfie L-AqiL fnpwi PUTP_SALTY : 384- 389: vlvva LiAiaL aanpd YIDK_ECOLI : 172- 176: villg L-AgiL yavig YIDK_ECOLI : 301- 306: lvlpg LiAfhL yqdlp YJCG_ECOLI : 8- 12: rvlta L-AatL pfaan YJCG_ECOLI : 120- 125: piilf LiAerL rnlgr YWCA_BACSU : 188- 193: ikavl LmAgtL visii YWCA_BACSU : 220- 225: ktatp LgAdfL npgnk YWCA_BACSU : 242- 246: tlsln L-AlvL gtagl YWCA_BACSU : 314- 319: nmaap LlAkaL ggdfl YWCA_BACSU : 315- 319: maapl L-AkaL ggdfl T 20: 12.0102 33( 16) L-x(2)-G-x(1,2)-L Occurences: 33(16) NAAA_PIG : 171- 177: aifik LalGldL ylaif NAAA_PIG : 423- 428: sekel LiaGr-L fiill NAGC_HUMAN : 171- 177: aifin LalGlnL ylaif NAGC_HUMAN : 489- 494: gafwg LilGl-L igisr NAGC_PIG : 114- 120: aifit LalGldL ylaif NAGC_RABIT : 489- 494: gafwg LvlGf-L igisr NAGL_HUMAN : 35- 41: aayfl LviGvgL wsmcr NAGL_HUMAN : 107- 112: alfvv LllGw-L fapvy NAGL_HUMAN : 423- 428: gdrel LlvGr-L wvvfi NAGL_HUMAN : 489- 494: gafwg LigGl-L mglar NAMI_CANFA : 143- 148: klsvd LysGa-L fiqes NAMI_CANFA : 300- 305: akgst LmaGf-L kllpm NANU_RABIT : 35- 41: aayfl LviGvgL wsmcr NANU_RABIT : 107- 112: alfvv LllGw-L fapvy NANU_RABIT : 422- 427: gegel LlvGr-L wvvfi NANU_RABIT : 488- 493: gafwg LigGl-L mglar PANF_ECOLI : 89- 94: lpavw LslGi-L gkkfa PANF_ECOLI : 283- 289: ivvai LmfGmhL agalg PANF_ECOLI : 375- 380: savit LvlGa-L lllaa PANF_ECOLI : 375- 381: savit LvlGalL llaaw PANF_ECOLI : 398- 403: iwlnl LafGg-L eavfl PANF_HAEIN : 89- 94: vpvvw LalGa-L gkkfa PANF_HAEIN : 269- 274: kdska LhrGm-L igtiv PUTP_ECOLI : 92- 97: winwk LvaGr-L rvhte PUTP_HAEIN : 19- 24: yifgm LliGv-L ayyyt PUTP_HAEIN : 92- 97: yfnwl LvaGr-L rvyte PUTP_KLEPN : 92- 97: winwk LvaGr-L rvhte PUTP_SALTY : 92- 97: winwk LvaGr-L rvhte YIDK_ECOLI : 138- 143: flpiv LysGa-L alnsl YIDK_ECOLI : 197- 202: ingig LviGg-L mvpvf YJCG_ECOLI : 197- 202: mmmyv LfgGm-L attwv YJCG_ECOLI : 265- 271: dpisa LslGlgL mfgta YWCA_BACSU : 159- 164: ytaav LivGv-L mtiyv YWCA_BACSU : 188- 193: ikavl LmaGt-L visii Number of patterns evaluated by Pratt:4858 Total running time: 8 seconds