------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 10 sequences from file NA_GALACTOSIDE_SYMP PATTERN CONSERVATION: CM: min Nr of Seqs to Match 10 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename NA_GALACTOSIDE_SYMP.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: LACY_LACDE 627 LACY_STRTR 634 MELB_ECOLI 469 MELB_KLEPN 471 MELB_SALTY 476 RAFP_PEDPE 641 UIDB_ECOLI 111 YICJ_ECOLI 460 YIHO_ECOLI 723 YIHP_ECOLI 481 Pratt run started at Thu Feb 6 20:22:48 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 12.5102 10( 10) G-T-x(2)-L 2: 12.5102 10( 10) G-x-F-x-P 3: 12.5102 10( 10) L-x(4)-T-D 4: 12.0102 12( 10) V-x(0,1)-F-x(2)-L 5: 12.0102 10( 10) F-x(4)-F-x(2,3)-L 6: 12.0102 13( 10) L-x(2)-F-x(2,3)-L 7: 12.0102 12( 10) F-x(1,2)-T-x(2)-L 8: 12.0102 15( 10) L-x(3)-T-x(1,2)-L 9: 12.0102 19( 10) L-x(3,4)-T-x(2)-L 10: 12.0102 15( 10) F-x-L-x(2,3)-A 11: 12.0102 16( 10) F-x(4)-L-x(0,1)-G 12: 12.0102 16( 10) G-x(2,3)-L-x(3)-L 13: 12.0102 19( 10) A-G-x(2,3)-L 14: 12.0102 16( 10) G-x(0,1)-G-A 15: 12.0102 11( 10) T-x(0,1)-D-x(2)-G 16: 12.0102 17( 10) L-x(3,4)-T-D 17: 12.0102 18( 10) L-x(0,1)-L-x(3)-T 18: 12.0102 22( 10) L-x-L-x(0,1)-L 19: 12.0102 19( 10) L-x(1,2)-L-L 20: 12.0102 17( 10) L-x(0,1)-L-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 36.3524 10( 10) G-[HK]-F-[KR]-P-[FW]-[ILV]-[LV]-x-[AG]-[AGST]-x(4)-[ILV] B 2: 14.6091 11( 10) L-x(2)-F-x(2,3)-L-[AGV] C 3: 13.9724 14( 10) L-x(1,2)-L-L-x(4)-[ACDGN] D 4: 13.9337 13( 10) F-x(4)-L-x(0,1)-G-x-[AGILP] E 5: 12.5102 10( 10) G-T-x(2)-L F 6: 12.5102 10( 10) L-x(4)-T-D G 7: 12.0102 12( 10) V-x(0,1)-F-x(2)-L H 8: 12.0102 10( 10) F-x(4)-F-x(2,3)-L I 9: 12.0102 12( 10) F-x(1,2)-T-x(2)-L J 10: 12.0102 15( 10) L-x(3)-T-x(1,2)-L K 11: 12.0102 19( 10) L-x(3,4)-T-x(2)-L L 12: 12.0102 15( 10) F-x-L-x(2,3)-A M 13: 12.0102 16( 10) G-x(2,3)-L-x(3)-L N 14: 12.0102 19( 10) A-G-x(2,3)-L O 15: 12.0102 16( 10) G-x(0,1)-G-A P 16: 12.0102 11( 10) T-x(0,1)-D-x(2)-G Q 17: 12.0102 17( 10) L-x(3,4)-T-D R 18: 12.0102 18( 10) L-x(0,1)-L-x(3)-T S 19: 12.0102 22( 10) L-x-L-x(0,1)-L T 20: 12.0102 17( 10) L-x(0,1)-L-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 36.3524 10( 10) G-[HK]-F-[KR]-P-[FW]-[ILV]-[LV]-x-[AG]-[AGST]-x(4)-[ILV] Occurences: 10(10) LACY_LACDE : 79- 94: tesrw GKFKPWVVgGGiissL allal LACY_STRTR : 86- 101: tntky GKFKPWVVgGGiissI tllll MELB_ECOLI : 70- 85: trsrw GKFKPWILiGTlansV ilfll MELB_KLEPN : 74- 89: trsrw GKFKPWILiGTitnsV vlyml MELB_SALTY : 74- 89: trsrw GKFKPWILiGTltnsL vlfll RAFP_PEDPE : 88- 103: tknsp GHFRPWVVvGGtvssI illll UIDB_ECOLI : 75- 90: ceyrw GKFRPFLLfGTaplmI fsvlv YICJ_ECOLI : 77- 92: trsrw GKFRPWVLfGAlpfgI vcvla YIHO_ECOLI : 86- 101: nigpk GKFRPFILyAAvpaaL iatlq YIHP_ECOLI : 94- 109: kigpk GKFRPFILyASfpvtL laian B 2: 14.6091 11( 10) L-x(2)-F-x(2,3)-L-[AGV] Occurences: 11(10) LACY_LACDE : 266- 274: lnalq LyyFsyiLG dargy LACY_STRTR : 104- 111: ssitl LllFtd-LG glnkt LACY_STRTR : 273- 281: lnalq LyyFtfiLG dsgky MELB_ECOLI : 279- 286: anlvt LvfFpr-LV kslsr MELB_KLEPN : 283- 290: anllt LilFpr-LV kglsr MELB_SALTY : 283- 290: anllt LivFpr-LV kmlsr RAFP_PEDPE : 106- 113: ssiil LllFtn-LG glyak UIDB_ECOLI : 88- 95: fgtap LmiFsv-LV fwvlt YICJ_ECOLI : 236- 243: rivgl LtiFni-LA vcvrg YIHO_ECOLI : 251- 259: anlct LaaFnikLA iqvyy YIHP_ECOLI : 262- 270: anlct LgaFnvkLA iqvyy C 3: 13.9724 14( 10) L-x(1,2)-L-L-x(4)-[ACDGN] Occurences: 14(10) LACY_LACDE : 94- 102: giiss La-LLalftD fggin LACY_STRTR : 103- 111: issit Ll-LLftdlG glnkt MELB_ECOLI : 229- 238: ykndq LscLLgmalA ynvas MELB_KLEPN : 233- 242: ykndq LacLLgmalA yntaa MELB_SALTY : 233- 242: ykndq LscLLgmalA ynias RAFP_PEDPE : 105- 113: vssii Ll-LLftnlG glyak UIDB_ECOLI : 29- 37: famga Lf-LLsyytD vagvg YICJ_ECOLI : 118- 127: aityt LltLLytvvN ipyca YICJ_ECOLI : 119- 127: itytl Lt-LLytvvN ipyca YIHO_ECOLI : 37- 45: lcigt Ly-LLkfytD elgmp YIHP_ECOLI : 45- 53: ldigt Ly-LLkfytD vlglp YIHP_ECOLI : 174- 182: qggat Lg-LLlctvG fvpvm YIHP_ECOLI : 207- 216: atlfs LfgLLfmwiC ysgvk YIHP_ECOLI : 326- 335: lliwv LgdLLnyffG ggsvs D 4: 13.9337 13( 10) F-x(4)-L-x(0,1)-G-x-[AGILP] Occurences: 13(10) LACY_LACDE : 496- 504: vddpv FadkkL-GdG falvp LACY_STRTR : 119- 128: nktnp FlylvLfGiI ylvmd MELB_ECOLI : 72- 81: srwgk FkpwiLiGtL ansvi MELB_ECOLI : 382- 390: afaaf FiavvL-GmI gyvpn MELB_KLEPN : 76- 85: srwgk FkpwiLiGtI tnsvv MELB_KLEPN : 386- 394: afaaw FiaivL-GiI gyvpn MELB_SALTY : 76- 85: srwgk FkpwiLiGtL tnslv MELB_SALTY : 386- 394: afaaf FialvL-GlI gytpn RAFP_PEDPE : 510- 518: vndpt FaagtL-GdG faikp UIDB_ECOLI : 77- 86: yrwgk FrpflLfGtA plmif YICJ_ECOLI : 79- 88: srwgk FrpwvLfGaL pfgiv YIHO_ECOLI : 42- 50: lyllk FytdeL-GmP ayygg YIHP_ECOLI : 50- 58: lyllk FytdvL-GlP gtygg E 5: 12.5102 10( 10) G-T-x(2)-L Occurences: 10(10) LACY_LACDE : 549- 553: ihlgl GTakL ngtgf LACY_STRTR : 556- 560: ihvgi GTvkL ngegf MELB_ECOLI : 41- 45: svglv GTlfL variw MELB_KLEPN : 45- 49: svgvv GTlfL varil MELB_SALTY : 45- 49: svglv GTlfL variw RAFP_PEDPE : 563- 567: ihigl GTvkL rgtgf UIDB_ECOLI : 84- 88: pfllf GTapL mifsv YICJ_ECOLI : 48- 52: pagfv GTmfL varal YIHO_ECOLI : 35- 39: lmlci GTlyL lkfyt YIHP_ECOLI : 43- 47: illdi GTlyL lkfyt F 6: 12.5102 10( 10) L-x(4)-T-D Occurences: 10(10) LACY_LACDE : 96- 102: issla LlalfTD fggin LACY_STRTR : 103- 109: issit LlllfTD lggln MELB_ECOLI : 25- 31: ivymy LmyyyTD vvgls MELB_KLEPN : 29- 35: ivymy LmyyyTD ivgls MELB_SALTY : 29- 35: ivymy LmyyyTD vvgls RAFP_PEDPE : 149- 155: gfwsm LpsltTD srere UIDB_ECOLI : 31- 37: mgalf LlsyyTD vagvg YICJ_ECOLI : 282- 288: ligsa LakplTD wkckv YIHO_ECOLI : 39- 45: igtly LlkfyTD elgmp YIHP_ECOLI : 47- 53: igtly LlkfyTD vlglp G 7: 12.0102 12( 10) V-x(0,1)-F-x(2)-L Occurences: 12(10) LACY_LACDE : 234- 238: ttlkq V-FkvL gqndq LACY_STRTR : 241- 245: tslkq V-FkvL gqndq MELB_ECOLI : 280- 285: nlvtl VfFprL vksls MELB_KLEPN : 125- 130: ytimd VpFwsL vptit MELB_SALTY : 285- 289: lltli V-FprL vkmls RAFP_PEDPE : 125- 130: amiyl VvFaiL yitmd RAFP_PEDPE : 126- 130: miylv V-FaiL yitmd UIDB_ECOLI : 95- 99: ifsvl V-FwvL tdwsh YICJ_ECOLI : 83- 88: kfrpw VlFgaL pfgiv YICJ_ECOLI : 192- 197: avlsv VaFmmL afcff YIHO_ECOLI : 173- 178: llict VaFipL qslfs YIHP_ECOLI : 342- 347: gsvsf VaFscL affgs H 8: 12.0102 10( 10) F-x(4)-F-x(2,3)-L Occurences: 10(10) LACY_LACDE : 16- 25: yaaga FgndvFyatL styfi LACY_STRTR : 19- 28: yaaga FgndvFyatL styfi MELB_ECOLI : 173- 182: ggdrg FgfqmFtlvL iaffi MELB_KLEPN : 177- 186: gadrg FgfqmFtlvL iaffv MELB_SALTY : 177- 186: gadrg FgfqmFtlvL iaffi RAFP_PEDPE : 140- 149: difys FkdvgFwsmL psltt UIDB_ECOLI : 91- 99: aplmi FsvlvFwv-L tdwsh YICJ_ECOLI : 363- 372: ltgis FagtlFvlkL glxfg YIHO_ECOLI : 338- 347: fscva FfgtaFvnsL nwalv YIHP_ECOLI : 349- 358: fscla FfgsaFvnsL nwalv I 9: 12.0102 12( 10) F-x(1,2)-T-x(2)-L Occurences: 12(10) LACY_LACDE : 32- 37: tyfiv Fv-TthL fnagd LACY_STRTR : 35- 40: tyfim Fv-TthL fntgd MELB_ECOLI : 418- 424: lptlf FmvTliL yfrfy MELB_KLEPN : 422- 428: lptlf FalTlfL yfryy MELB_SALTY : 422- 428: lpvlf FmmTlvL yfryy RAFP_PEDPE : 37- 42: gylii Fi-TshL fdtgn UIDB_ECOLI : 83- 88: rpfll Fg-TapL mifsv YICJ_ECOLI : 46- 52: gipag FvgTmfL varal YICJ_ECOLI : 296- 302: ckvti FwwTnaL lavis YIHO_ECOLI : 42- 47: lyllk Fy-TdeL gmpay YIHO_ECOLI : 574- 580: gwypl FkpTdkL tiqpg YIHP_ECOLI : 50- 55: lyllk Fy-TdvL glpgt J 10: 12.0102 15( 10) L-x(3)-T-x(1,2)-L Occurences: 15(10) LACY_LACDE : 206- 213: aivgi LtsiTvgL gthev LACY_LACDE : 546- 553: lvlih LglgTakL ngtgf LACY_STRTR : 104- 110: ssitl LllfTd-L gglnk LACY_STRTR : 273- 280: lnalq LyyfTfiL gdsgk MELB_ECOLI : 330- 336: iagil LnvgTa-L fwvlq MELB_KLEPN : 334- 340: lagvl LnigTa-L fwvlq MELB_SALTY : 334- 340: aagif LnigTa-L fwvlq RAFP_PEDPE : 106- 112: ssiil LllfTn-L gglya UIDB_ECOLI : 81- 88: kfrpf LlfgTapL mifsv YICJ_ECOLI : 96- 103: givcv LaysTpdL smngk YIHO_ECOLI : 32- 39: gsnlm LcigTlyL lkfyt YIHO_ECOLI : 40- 47: gtlyl LkfyTdeL gmpay YIHO_ECOLI : 573- 580: egwyp LfkpTdkL tiqpg YIHP_ECOLI : 40- 47: asnil LdigTlyL lkfyt YIHP_ECOLI : 48- 55: gtlyl LkfyTdvL glpgt K 11: 12.0102 19( 10) L-x(3,4)-T-x(2)-L Occurences: 19(10) LACY_LACDE : 206- 213: aivgi Ltsi-TvgL gthev LACY_LACDE : 546- 553: lvlih Lglg-TakL ngtgf LACY_STRTR : 273- 280: lnalq Lyyf-TfiL gdsgk LACY_STRTR : 484- 492: anvvs LvtptTgyL vdlss MELB_ECOLI : 416- 424: ialpt LffmvTliL yfrfy MELB_KLEPN : 420- 428: ialpt LffalTlfL yfryy MELB_SALTY : 81- 89: fkpwi LigtlTnsL vlfll MELB_SALTY : 420- 428: ivlpv LffmmTlvL yfryy RAFP_PEDPE : 34- 42: ilsgy LiifiTshL fdtgn UIDB_ECOLI : 81- 88: kfrpf Llfg-TapL mifsv YICJ_ECOLI : 96- 103: givcv Lays-TpdL smngk YIHO_ECOLI : 32- 39: gsnlm Lcig-TlyL lkfyt YIHO_ECOLI : 39- 47: igtly LlkfyTdeL gmpay YIHO_ECOLI : 40- 47: gtlyl Lkfy-TdeL gmpay YIHO_ECOLI : 573- 580: egwyp Lfkp-TdkL tiqpg YIHP_ECOLI : 39- 47: lasni LldigTlyL lkfyt YIHP_ECOLI : 40- 47: asnil Ldig-TlyL lkfyt YIHP_ECOLI : 47- 55: igtly LlkfyTdvL glpgt YIHP_ECOLI : 48- 55: gtlyl Lkfy-TdvL glpgt L 12: 12.0102 15( 10) F-x-L-x(2,3)-A Occurences: 15(10) LACY_LACDE : 196- 201: qgwff FaLiv-A ivgil LACY_LACDE : 420- 426: hgqmv FkLamfA lpavm LACY_LACDE : 505- 510: klgdg FaLvp-A dgkvy LACY_STRTR : 427- 433: hqqfi FkLgmfA fpaat MELB_ECOLI : 88- 93: nsvil FlLfs-A hlfeg MELB_ECOLI : 178- 184: fgfqm FtLvliA ffivs MELB_KLEPN : 182- 188: fgfqm FtLvliA ffvvs MELB_SALTY : 92- 97: nslvl FlLfs-A hlfeg MELB_SALTY : 182- 188: fgfqm FtLvliA ffias RAFP_PEDPE : 325- 331: agclv FmLggiA iftia RAFP_PEDPE : 429- 435: agqlh FkLtmfA fpalm UIDB_ECOLI : 80- 86: gkfrp FlLfgtA plmif YICJ_ECOLI : 152- 157: lqswr FvLat-A ggmls YIHO_ECOLI : 91- 96: gkfrp FiLya-A vpaal YIHP_ECOLI : 252- 257: gnrpl FiLci-A nlctl M 13: 12.0102 16( 10) G-x(2,3)-L-x(3)-L Occurences: 16(10) LACY_LACDE : 59- 66: tairi Gev-LldpL ignai LACY_STRTR : 335- 342: ifsia Gts-LpiiL taael MELB_ECOLI : 307- 314: pvlsc Gvl-LlmaL msyhn MELB_ECOLI : 333- 340: illnv Gta-LfwvL qvimv MELB_KLEPN : 311- 318: pvlgc Gvl-LlmaL ggvyn MELB_KLEPN : 337- 344: vllni Gta-LfwvL qvimv MELB_SALTY : 337- 344: iflni Gta-LfwvL qvimv RAFP_PEDPE : 173- 180: lgsti Ggg-LvgvL vmpav RAFP_PEDPE : 337- 344: iftia Gsn-LwlvL laatm UIDB_ECOLI : 54- 62: avtga GircLrrrL crtsg YICJ_ECOLI : 158- 165: vlata Ggm-LstvL mmplv YICJ_ECOLI : 279- 286: vgnli Gsa-LakpL tdwkc YIHO_ECOLI : 284- 291: gffsm Gci-LigvL lvplt YIHP_ECOLI : 170- 178: aawrq GgatLgllL ctvgf YIHP_ECOLI : 171- 178: awrqg Gat-LgllL ctvgf YIHP_ECOLI : 319- 326: kkvyi Ggl-LiwvL gdlln N 14: 12.0102 19( 10) A-G-x(2,3)-L Occurences: 19(10) LACY_LACDE : 570- 575: gsqve AGqqiL efwdp LACY_STRTR : 334- 338: gifsi AGts-L piilt MELB_ECOLI : 156- 160: agfvt AGvt-L pfvny MELB_ECOLI : 271- 276: yylsy AGaanL vtlvf MELB_ECOLI : 296- 301: rrilw AGasiL pvlsc MELB_ECOLI : 326- 330: vlivi AGil-L nvgta MELB_KLEPN : 160- 164: agfvt AGvt-L pfvna MELB_KLEPN : 275- 280: yymsy AGaanL ltlil MELB_KLEPN : 330- 334: alisl AGvl-L nigta MELB_SALTY : 160- 164: agfvt AGit-L pfvsy MELB_SALTY : 213- 218: dngvt AGrphL tlkti MELB_SALTY : 275- 280: yylsy AGaanL ltliv MELB_SALTY : 330- 334: aliva AGif-L nigta RAFP_PEDPE : 336- 340: aifti AGsn-L wlvll UIDB_ECOLI : 53- 58: havtg AGircL rrrlc YICJ_ECOLI : 157- 161: fvlat AGgm-L stvlm YIHO_ECOLI : 308- 312: kqvyl AGmv-L wavgd YIHO_ECOLI : 544- 548: nfdmg AGim-L tntyn YIHP_ECOLI : 246- 251: sfrai AGnrpL filci O 15: 12.0102 16( 10) G-x(0,1)-G-A Occurences: 16(10) LACY_LACDE : 386- 388: lvdkl G-GA lsnwf LACY_STRTR : 393- 395: lidkl G-GA msnwl MELB_ECOLI : 8- 11: tklsy GfGA fgkdf MELB_KLEPN : 12- 15: tklsy GfGA fgkdf MELB_KLEPN : 102- 104: ahhfs G-GA llawv MELB_KLEPN : 171- 173: fvnav G-GA drgfg MELB_SALTY : 12- 15: tklsy GfGA fgkdf MELB_SALTY : 171- 173: fvsyv G-GA drgfg RAFP_PEDPE : 17- 20: grliy GfGA kgnda RAFP_PEDPE : 395- 397: lidkf G-GA isngv UIDB_ECOLI : 40- 43: ytdva GvGA aarah YICJ_ECOLI : 248- 250: avcvr G-GA mmyyv YICJ_ECOLI : 377- 379: lglxf G-GA ligwm YIHO_ECOLI : 162- 164: rayrq G-GA tigll YIHO_ECOLI : 596- 598: ksigs G-GA vyldv YIHP_ECOLI : 170- 172: aawrq G-GA tlgll P 16: 12.0102 11( 10) T-x(0,1)-D-x(2)-G Occurences: 11(10) LACY_LACDE : 101- 105: llalf T-DfgG inqsk LACY_STRTR : 108- 112: llllf T-DlgG lnktn MELB_ECOLI : 30- 34: lmyyy T-DvvG lsvgl MELB_KLEPN : 34- 38: lmyyy T-DivG lsvgv MELB_SALTY : 34- 38: lmyyy T-DvvG lsvgl RAFP_PEDPE : 195- 200: akats TgDnrG wfifa UIDB_ECOLI : 36- 40: llsyy T-DvaG vgaaa YICJ_ECOLI : 37- 41: mmffy T-DifG ipagf YIHO_ECOLI : 44- 48: llkfy T-DelG mpayy YIHO_ECOLI : 627- 631: nnyss T-DlsG eldnn YIHP_ECOLI : 52- 56: llkfy T-DvlG lpgty Q 17: 12.0102 17( 10) L-x(3,4)-T-D Occurences: 17(10) LACY_LACDE : 96- 102: issla LlalfTD fggin LACY_LACDE : 97- 102: sslal Lalf-TD fggin LACY_STRTR : 103- 109: issit LlllfTD lggln LACY_STRTR : 104- 109: ssitl Lllf-TD lggln MELB_ECOLI : 25- 31: ivymy LmyyyTD vvgls MELB_KLEPN : 29- 35: ivymy LmyyyTD ivgls MELB_SALTY : 29- 35: ivymy LmyyyTD vvgls RAFP_PEDPE : 149- 155: gfwsm LpsltTD srere RAFP_PEDPE : 362- 367: vflvv Lmvi-TD sveyg UIDB_ECOLI : 31- 37: mgalf LlsyyTD vagvg UIDB_ECOLI : 32- 37: galfl Lsyy-TD vagvg YICJ_ECOLI : 282- 288: ligsa LakplTD wkckv YIHO_ECOLI : 39- 45: igtly LlkfyTD elgmp YIHO_ECOLI : 40- 45: gtlyl Lkfy-TD elgmp YIHO_ECOLI : 573- 578: egwyp Lfkp-TD kltiq YIHP_ECOLI : 47- 53: igtly LlkfyTD vlglp YIHP_ECOLI : 48- 53: gtlyl Lkfy-TD vlglp R 18: 12.0102 18( 10) L-x(0,1)-L-x(3)-T Occurences: 18(10) LACY_LACDE : 96- 101: issla L-LalfT dfggi LACY_STRTR : 103- 108: issit L-LllfT dlggl LACY_STRTR : 271- 277: ntlna LqLyyfT filgd MELB_ECOLI : 329- 334: viagi L-LnvgT alfwv MELB_KLEPN : 114- 119: vwlty L-LwgfT ytimd MELB_KLEPN : 333- 338: slagv L-LnigT alfwv MELB_SALTY : 391- 397: fialv LgLigyT pnvaq RAFP_PEDPE : 105- 110: vssii L-LllfT nlggl RAFP_PEDPE : 342- 348: gsnlw LvLlaaT mfgfp UIDB_ECOLI : 31- 36: mgalf L-LsyyT dvagv YICJ_ECOLI : 67- 72: dpcmg L-LadrT rsrwg YIHO_ECOLI : 30- 36: dvgsn LmLcigT lyllk YIHO_ECOLI : 39- 44: igtly L-LkfyT delgm YIHO_ECOLI : 291- 296: iligv L-LvplT vkcfg YIHO_ECOLI : 502- 507: inaii L-LsslT sasvf YIHP_ECOLI : 39- 44: lasni L-LdigT lyllk YIHP_ECOLI : 47- 52: igtly L-LkfyT dvlgl YIHP_ECOLI : 174- 180: qggat LgLllcT vgfvp S 19: 12.0102 22( 10) L-x-L-x(0,1)-L Occurences: 22(10) LACY_LACDE : 94- 97: giiss LaL-L alftd LACY_LACDE : 331- 335: vasgs LaLsL vgaef LACY_STRTR : 103- 106: issit LlL-L ftdlg LACY_STRTR : 120- 124: ktnpf LyLvL fgiiy MELB_ECOLI : 87- 90: ansvi LfL-L fsahl MELB_KLEPN : 281- 285: gaanl LtLiL fprlv MELB_KLEPN : 424- 428: tlffa LtLfL yfryy MELB_SALTY : 89- 93: tltns LvLfL lfsah MELB_SALTY : 91- 94: tnslv LfL-L fsahl MELB_SALTY : 389- 393: affia LvLgL igytp RAFP_PEDPE : 105- 108: vssii LlL-L ftnlg RAFP_PEDPE : 340- 344: iagsn LwLvL laatm RAFP_PEDPE : 342- 345: gsnlw LvL-L aatmf RAFP_PEDPE : 439- 442: fafpa LmL-L iaigi UIDB_ECOLI : 29- 32: famga LfL-L syytd YICJ_ECOLI : 119- 122: itytl LtL-L ytvvn YICJ_ECOLI : 370- 374: gtlfv LkLgL xfgga YIHO_ECOLI : 9- 13: sdhnp LtLkL nlrek YIHO_ECOLI : 11- 15: hnplt LkLnL rekia YIHO_ECOLI : 37- 40: lcigt LyL-L kfytd YIHP_ECOLI : 45- 48: ldigt LyL-L kfytd YIHP_ECOLI : 174- 177: qggat LgL-L lctvg YIHP_ECOLI : 174- 178: qggat LgLlL ctvgf T 20: 12.0102 17( 10) L-x(0,1)-L-L Occurences: 17(10) LACY_LACDE : 94- 97: giiss LaLL alftd LACY_STRTR : 103- 105: issit L-LL lftdl LACY_STRTR : 103- 106: issit LlLL ftdlg LACY_STRTR : 104- 106: ssitl L-LL ftdlg MELB_ECOLI : 87- 90: ansvi LfLL fsahl MELB_ECOLI : 309- 311: lscgv L-LL malms MELB_KLEPN : 313- 315: lgcgv L-LL malgg MELB_SALTY : 91- 94: tnslv LfLL fsahl RAFP_PEDPE : 105- 107: vssii L-LL lftnl RAFP_PEDPE : 105- 108: vssii LlLL ftnlg RAFP_PEDPE : 106- 108: ssiil L-LL ftnlg RAFP_PEDPE : 342- 345: gsnlw LvLL aatmf RAFP_PEDPE : 439- 442: fafpa LmLL iaigi UIDB_ECOLI : 29- 32: famga LfLL syytd YICJ_ECOLI : 119- 122: itytl LtLL ytvvn YIHO_ECOLI : 37- 40: lcigt LyLL kfytd YIHP_ECOLI : 45- 48: ldigt LyLL kfytd YIHP_ECOLI : 174- 177: qggat LgLL lctvg YIHP_ECOLI : 176- 178: gatlg L-LL ctvgf Number of patterns evaluated by Pratt:3612 Total running time: 4 seconds