------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 20 sequences from file NA_DICARBOXYL_SYMP_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 20 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename NA_DICARBOXYL_SYMP_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: DCTA_ECOLI 428 DCTA_RHILE 444 DCTA_RHIME 441 DCTA_RHISN 449 EAT1_BOVIN 542 EAT1_HUMAN 542 EAT1_RAT 543 EAT2_HUMAN 574 EAT2_MOUSE 572 EAT2_RAT 573 EAT3_HUMAN 525 EAT3_RABIT 524 GLTP_BACSU 414 GLTP_ECOLI 437 GLTT_BACCA 421 GLTT_BACST 421 SATT_HUMAN 532 YB54_HAEIN 440 YGJU_ECOLI 414 YGJU_HAEIN 414 Pratt run started at Thu Feb 6 20:22:27 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 15.1802 20( 20) A-x(1,2)-N-x(2)-G-x(1,3)-A 2: 14.6802 34( 20) L-x(2,4)-A-A-x(2,4)-A 3: 14.6802 22( 20) A-x(0,2)-N-x(2)-G-x(1,3)-A 4: 12.5102 22( 20) A-A-x(2)-I 5: 12.5102 35( 20) L-L-x(2)-L 6: 12.5102 38( 20) A-x-I-x(2)-A 7: 12.0102 39( 20) V-L-x(2,3)-A 8: 12.0102 39( 20) G-x(0,1)-I-x(3)-L 9: 12.0102 35( 20) V-x(1,2)-A-x(3)-G 10: 12.0102 39( 20) L-x(1,2)-L-x(2)-S 11: 12.0102 43( 20) L-x-L-x(1,2)-L 12: 12.0102 49( 20) L-x(0,1)-L-x(2)-L 13: 12.0102 42( 20) L-x(4)-L-x(3,4)-L 14: 12.0102 41( 20) L-x(4)-L-x(2,3)-L 15: 12.0102 41( 20) L-x(3,4)-L-x(3)-L 16: 12.0102 47( 20) G-x(2)-L-x(2,3)-L 17: 12.0102 37( 20) G-x(3)-L-x(1,2)-L 18: 12.0102 41( 20) V-x-G-x(2,3)-L 19: 12.0102 51( 20) V-x(1,2)-G-x(2)-L 20: 12.0102 31( 20) G-x-A-x(0,1)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 16.6121 21( 20) A-A-[AGILV]-x-I-[AGTV] B 2: 16.5164 26( 20) V-x(1,2)-G-x(2)-L-[AGILV]-[ALV] C 3: 16.3119 25( 20) L-x(2,4)-A-A-x(2,4)-A-x(3)-[DGNSTV] D 4: 15.1802 20( 20) A-x(1,2)-N-x(2)-G-x(1,3)-A E 5: 15.1190 21( 20) A-A-x(2)-I-[AGT] F 6: 14.6802 22( 20) A-x(0,2)-N-x(2)-G-x(1,3)-A G 7: 14.6756 25( 20) G-[AIV]-A-x(0,1)-G H 8: 14.2509 34( 20) G-x(2)-L-x(2,3)-L-x(4)-[GILV] I 9: 14.0518 33( 20) G-x(3)-L-x(1,2)-L-x(4)-[FILMV] J 10: 13.9189 33( 20) L-x(4)-L-x(2,3)-L-x-[AGILV] K 11: 13.9189 32( 20) V-x-G-x(2,3)-L-x(2)-[AGILV] L 12: 13.8776 28( 20) L-x(0,1)-L-x-[AGSTV]-L M 13: 13.6594 30( 20) L-x(4)-L-x(3,4)-L-x-[AGILPV] N 14: 12.5102 35( 20) L-L-x(2)-L O 15: 12.5102 38( 20) A-x-I-x(2)-A P 16: 12.0102 39( 20) V-L-x(2,3)-A Q 17: 12.0102 39( 20) G-x(0,1)-I-x(3)-L R 18: 12.0102 35( 20) V-x(1,2)-A-x(3)-G S 19: 12.0102 39( 20) L-x(1,2)-L-x(2)-S T 20: 12.0102 43( 20) L-x-L-x(1,2)-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 16.6121 21( 20) A-A-[AGILV]-x-I-[AGTV] Occurences: 21(20) DCTA_ECOLI : 312- 317: iyltm AAVfIA qatns DCTA_RHILE : 325- 330: iymtl AALfIA qatgi DCTA_RHIME : 322- 327: iymtl AALfIA qatdt DCTA_RHISN : 330- 335: iymtl AALfIA qgtdt EAT1_BOVIN : 409- 414: lyeal AAIfIA qvnnf EAT1_HUMAN : 409- 414: lyeal AAIfIA qvnnf EAT1_RAT : 409- 414: lyeal AAIfIA qvnnf EAT2_HUMAN : 408- 413: lyeav AAIfIA qmngv EAT2_MOUSE : 407- 412: lyeav AAIfIA qmngv EAT2_RAT : 407- 412: lyeav AAIfIA qmngv EAT3_HUMAN : 378- 383: lyeav AAVfIA qlndl EAT3_RABIT : 377- 382: lyeav AAVfIA qlndm GLTP_BACSU : 158- 163: ilfgv AAAgIG kasep GLTP_ECOLI : 323- 328: lyqsi AAIfIA qlygi GLTT_BACCA : 313- 318: lyqal AAIfIA qlygi GLTT_BACST : 313- 318: lyqal AAIfIA qlygi SATT_HUMAN : 389- 394: ifqcv AAVfIA qlnnv YB54_HAEIN : 115- 120: ttais AAIgIA mvhlf YB54_HAEIN : 129- 134: lfdvs AAGlIV gdrel YGJU_ECOLI : 303- 308: inmag AAItIT vltla YGJU_HAEIN : 308- 313: inmag AAItIT iltla B 2: 16.5164 26( 20) V-x(1,2)-G-x(2)-L-[AGILV]-[ALV] Occurences: 26(20) DCTA_ECOLI : 366- 373: vghlp Va-GlaLIL gidrf DCTA_RHILE : 379- 386: vpsvp Va-GmaLIL gidrf DCTA_RHIME : 376- 383: vpsvp Va-GmaLIL gidrf DCTA_RHISN : 384- 391: vpsvp Va-GmaLIL gidrf EAT1_BOVIN : 484- 491: rtttn Vl-GdsLGA giveh EAT1_HUMAN : 484- 491: rtttn Vl-GdsLGA giveh EAT1_RAT : 484- 491: rtttn Vl-GdsLGA giveh EAT2_HUMAN : 51- 58: lltlt Vf-GviLGA vcggl EAT2_HUMAN : 133- 140: tiiaa Vl-GviLVL aihpg EAT2_MOUSE : 51- 58: llslt Vf-GviLGA vcggl EAT2_MOUSE : 133- 140: tiiaa Vl-GviLVL aihpg EAT2_RAT : 51- 58: llslt Vf-GviLGA vcggl EAT2_RAT : 133- 140: tiiaa Vl-GviLVL aihpg EAT3_HUMAN : 107- 115: ttlia VilGivLVV sikpg EAT3_RABIT : 106- 114: ttiia VilGivLVV sikpg GLTP_BACSU : 84- 91: vittl Vl-GlgLLL anvlk GLTP_BACSU : 221- 229: klvgt VflGlfLIL fvlfp GLTP_ECOLI : 398- 405: rtaln Vv-GnaLAV lviak GLTT_BACCA : 388- 395: rtavn Vi-GnsLAA iimsk GLTT_BACST : 388- 395: rtavn Vi-GnsLAA iimsk SATT_HUMAN : 52- 60: ltvsg VlaGagLGA alrgl SATT_HUMAN : 464- 471: ttvvn Ve-GdaLGA gilhh YB54_HAEIN : 30- 38: klgqt VfiGllLGL lfgav YGJU_ECOLI : 221- 229: aqllv VlvGcmLLV alvvn YGJU_ECOLI : 344- 351: cgasg Va-GgsLLL iplac YGJU_HAEIN : 349- 356: cgasg Va-GgsLLL iplac C 3: 16.3119 25( 20) L-x(2,4)-A-A-x(2,4)-A-x(3)-[DGNSTV] Occurences: 25(20) DCTA_ECOLI : 309- 321: gtsiy Ltm--AAvfi-AqatN sqmdi DCTA_RHILE : 351- 366: llvam LsskgAAgitgAgfiT laatl DCTA_RHIME : 348- 363: llvam LsskgAAgitgAgfiT laatl DCTA_RHISN : 356- 371: lliam LsskgAAgitgAgfiT laatl EAT1_BOVIN : 404- 418: mdgta LyealAAifi-AqvnN felnf EAT1_HUMAN : 404- 418: mdgta LyealAAifi-AqvnN felnf EAT1_RAT : 404- 418: mdgta LyealAAifi-AqvnN fdlnf EAT2_HUMAN : 403- 417: mdgta LyeavAAifi-AqmnG vvldg EAT2_HUMAN : 434- 449: sltat LasvgAAsipsAglvT mllil EAT2_MOUSE : 402- 416: mdgta LyeavAAifi-AqmnG vildg EAT2_MOUSE : 433- 448: sltat LasigAAsipsAglvT mllil EAT2_RAT : 402- 416: mdgta LyeavAAifi-AqmnG vildg EAT2_RAT : 433- 448: sltat LasigAAsipsAglvT mllil EAT3_HUMAN : 373- 387: mdgta LyeavAAvfi-AqlnD ldlgi EAT3_RABIT : 372- 386: mdgta LyeavAAvfi-AqlnD mdlsi GLTP_BACSU : 154- 169: iffai LfgvaAAgigkAsepV mkffe GLTP_ECOLI : 318- 332: ldgst LyqsiAAifi-AqlyG idlsi GLTT_BACCA : 308- 322: ldgst LyqalAAifi-AqlyG idmsv GLTT_BACST : 308- 322: ldgst LyqalAAifi-AqlyG idmpi SATT_HUMAN : 98- 111: lvvcs Lvsg-AAsld-AsclG rlggi YB54_HAEIN : 238- 253: ygvfa LmikmAAtskwAdivN lgnfi YGJU_ECOLI : 90- 103: lflyl LgtfsAAla--AvvfS fafps YGJU_HAEIN : 95- 108: ivlyl LgtflAAfv--AviaG fafpt YGJU_HAEIN : 334- 347: fvsal LlsivAAlc--AcgaS gvagg YGJU_HAEIN : 335- 347: vsall Lsiv-AAlc--AcgaS gvagg D 4: 15.1802 20( 20) A-x(1,2)-N-x(2)-G-x(1,3)-A Occurences: 20(20) DCTA_ECOLI : 384- 394: msear AltNlvGngvA tivva DCTA_RHILE : 397- 405: msecr AltNlvGn--A vativ DCTA_RHILE : 397- 407: msecr AltNlvGnavA tivva DCTA_RHIME : 394- 402: msecr AltNfvGn--A vativ DCTA_RHIME : 394- 404: msecr AltNfvGnavA tivva DCTA_RHISN : 402- 410: msecr AitNiiGn--A vativ DCTA_RHISN : 402- 412: msecr AitNiiGnavA tivva EAT1_BOVIN : 395- 403: vlpvg AtiNmdGt--A lyeal EAT1_HUMAN : 395- 403: vlpvg AtiNmdGt--A lyeal EAT1_RAT : 395- 403: vlpvg AtiNmdGt--A lyeal EAT2_HUMAN : 394- 402: vlpvg AtiNmdGt--A lyeav EAT2_MOUSE : 393- 401: vlpvg AtiNmdGt--A lyeav EAT2_RAT : 393- 401: vlpvg AtiNmdGt--A lyeav EAT3_HUMAN : 364- 372: vlpvg AtiNmdGt--A lyeav EAT3_RABIT : 363- 371: vlpvg AtiNmdGt--A lyeav GLTP_BACSU : 351- 360: lvvll AtaNavGlp-A egvai GLTP_ECOLI : 395- 402: dmart Al-NvvGn--A lavlv GLTP_ECOLI : 395- 404: dmart Al-NvvGnalA vlvia GLTT_BACCA : 385- 394: dmart Av-NviGnslA aiims GLTT_BACST : 385- 394: dmart Av-NviGnslA aiims SATT_HUMAN : 375- 383: ilpig AtvNmdGa--A ifqcv YB54_HAEIN : 421- 430: dmgrt Al-NvnGamvA gtitd YGJU_ECOLI : 296- 304: siplg AtiNmaGa--A ititv YGJU_HAEIN : 301- 309: siplg AniNmaGa--A ititi E 5: 15.1190 21( 20) A-A-x(2)-I-[AGT] Occurences: 21(20) DCTA_ECOLI : 312- 317: iyltm AAvfIA qatns DCTA_RHILE : 325- 330: iymtl AAlfIA qatgi DCTA_RHIME : 322- 327: iymtl AAlfIA qatdt DCTA_RHISN : 330- 335: iymtl AAlfIA qgtdt EAT1_BOVIN : 409- 414: lyeal AAifIA qvnnf EAT1_HUMAN : 409- 414: lyeal AAifIA qvnnf EAT1_RAT : 409- 414: lyeal AAifIA qvnnf EAT2_HUMAN : 408- 413: lyeav AAifIA qmngv EAT2_MOUSE : 407- 412: lyeav AAifIA qmngv EAT2_RAT : 407- 412: lyeav AAifIA qmngv EAT3_HUMAN : 378- 383: lyeav AAvfIA qlndl EAT3_RABIT : 377- 382: lyeav AAvfIA qlndm GLTP_BACSU : 158- 163: ilfgv AAagIG kasep GLTP_ECOLI : 323- 328: lyqsi AAifIA qlygi GLTT_BACCA : 313- 318: lyqal AAifIA qlygi GLTT_BACST : 313- 318: lyqal AAifIA qlygi SATT_HUMAN : 389- 394: ifqcv AAvfIA qlnnv YB54_HAEIN : 115- 120: ttais AAigIA mvhlf YGJU_ECOLI : 303- 308: inmag AAitIT vltla YGJU_HAEIN : 308- 313: inmag AAitIT iltla YGJU_HAEIN : 371- 376: isddv AAqmIG vgfii F 6: 14.6802 22( 20) A-x(0,2)-N-x(2)-G-x(1,3)-A Occurences: 22(20) DCTA_ECOLI : 384- 394: msear AltNlvGngvA tivva DCTA_RHILE : 397- 405: msecr AltNlvGn--A vativ DCTA_RHILE : 397- 407: msecr AltNlvGnavA tivva DCTA_RHIME : 394- 402: msecr AltNfvGn--A vativ DCTA_RHIME : 394- 404: msecr AltNfvGnavA tivva DCTA_RHISN : 402- 410: msecr AitNiiGn--A vativ DCTA_RHISN : 402- 412: msecr AitNiiGnavA tivva EAT1_BOVIN : 395- 403: vlpvg AtiNmdGt--A lyeal EAT1_HUMAN : 395- 403: vlpvg AtiNmdGt--A lyeal EAT1_RAT : 395- 403: vlpvg AtiNmdGt--A lyeal EAT2_HUMAN : 394- 402: vlpvg AtiNmdGt--A lyeav EAT2_MOUSE : 393- 401: vlpvg AtiNmdGt--A lyeav EAT2_RAT : 393- 401: vlpvg AtiNmdGt--A lyeav EAT3_HUMAN : 364- 372: vlpvg AtiNmdGt--A lyeav EAT3_RABIT : 363- 371: vlpvg AtiNmdGt--A lyeav GLTP_BACSU : 351- 360: lvvll AtaNavGlp-A egvai GLTP_BACSU : 353- 360: vllat A--NavGlp-A egvai GLTP_ECOLI : 395- 402: dmart Al-NvvGn--A lavlv GLTP_ECOLI : 395- 404: dmart Al-NvvGnalA vlvia GLTT_BACCA : 385- 394: dmart Av-NviGnslA aiims GLTT_BACST : 385- 394: dmart Av-NviGnslA aiims SATT_HUMAN : 375- 383: ilpig AtvNmdGa--A ifqcv YB54_HAEIN : 421- 430: dmgrt Al-NvnGamvA gtitd YGJU_ECOLI : 296- 304: siplg AtiNmaGa--A ititv YGJU_HAEIN : 152- 159: naifk A--NfiGvl-A wsigl YGJU_HAEIN : 301- 309: siplg AniNmaGa--A ititi G 7: 14.6756 25( 20) G-[AIV]-A-x(0,1)-G Occurences: 25(20) DCTA_ECOLI : 60- 63: ctvvt GIA-G mesmk DCTA_ECOLI : 342- 345: llssk GAA-G vtgsg DCTA_RHILE : 73- 76: ltvat GIA-G msdlq DCTA_RHILE : 355- 358: mlssk GAA-G itgag DCTA_RHIME : 70- 73: ltvat GIA-G mtdla DCTA_RHIME : 352- 355: mlssk GAA-G itgag DCTA_RHISN : 78- 81: ltvat GIA-G mtdla DCTA_RHISN : 360- 363: mlssk GAA-G itgag EAT1_BOVIN : 439- 442: taasi GAA-G ipqag EAT1_HUMAN : 439- 442: taasi GAA-G ipqag EAT1_RAT : 439- 442: taasi GAA-G ipqag EAT2_HUMAN : 253- 257: ffiaf GIAmG kmgdq EAT2_MOUSE : 252- 256: ffiaf GIAmG kmgeq EAT2_RAT : 252- 256: ffiaf GIAmG kmgeq EAT3_HUMAN : 408- 411: tsasi GAA-G vpqag EAT3_RABIT : 407- 410: taasi GAA-G vpqag GLTP_BACSU : 56- 59: stivi GAA-G sgsmk GLTP_ECOLI : 67- 70: stlvv GIA-G vgdak GLTP_ECOLI : 353- 356: mvtsk GIA-G vpgvs GLTT_BACCA : 343- 346: mvtsk GIA-G vpgvs GLTT_BACST : 343- 346: mvtsk GIA-G vpgvs SATT_HUMAN : 419- 422: tassv GAA-G vpagg YB54_HAEIN : 379- 382: aissf GIA-G vggga YGJU_ECOLI : 343- 346: acgas GVA-G gslll YGJU_ECOLI : 343- 347: acgas GVAgG sllli YGJU_HAEIN : 348- 351: acgas GVA-G gslll YGJU_HAEIN : 348- 352: acgas GVAgG sllli H 8: 14.2509 34( 20) G-x(2)-L-x(2,3)-L-x(4)-[GILV] Occurences: 34(20) DCTA_ECOLI : 148- 159: gafas GniLqv-LlfavL fgfal DCTA_RHILE : 44- 55: fypel GtqLkp-LgdafI klvkm DCTA_RHILE : 161- 172: gafad GdiLqv-LffsvL fgial DCTA_RHIME : 41- 52: fypdi GteLkp-LgdafI rlvkm DCTA_RHIME : 158- 169: gafae GdiLqv-LfisvL fgisl DCTA_RHISN : 166- 177: gafae GdiLqv-LfisvL fgisl EAT1_BOVIN : 85- 97: yfsfp GelLmrmLqmlvL pliis EAT1_BOVIN : 350- 361: pwvfi GglLqa-LitalG tssss EAT1_BOVIN : 401- 413: tinmd GtaLyeaLaaifI aqvnn EAT1_HUMAN : 85- 97: yfsfp GelLmrmLqmlvL pliis EAT1_HUMAN : 350- 361: pwvfi GglLqa-LitalG tssss EAT1_HUMAN : 401- 413: tinmd GtaLyeaLaaifI aqvnn EAT1_RAT : 85- 97: yfsfp GelLmrmLqmlvL pliis EAT1_RAT : 350- 361: pwvfi GglLqa-LitalG tssss EAT1_RAT : 401- 413: tinmd GtaLyeaLaaifI aqvnn EAT2_HUMAN : 34- 46: khrhl GlrLcdkLgknlL ltltv EAT2_HUMAN : 42- 54: lcdkl GknLlltLtvfgV ilgav EAT2_HUMAN : 82- 94: liafp GdiLmrmLkmliL pliis EAT2_MOUSE : 42- 54: mcdkl GknLllsLtvfgV ilgav EAT2_MOUSE : 82- 94: liafp GdiLmrmLkmliL pliis EAT2_RAT : 42- 54: mcdkl GknLllsLtvfgV ilgav EAT2_RAT : 82- 94: liafp GdiLmrmLkmliL pliis EAT3_HUMAN : 57- 69: yfafp GeiLmrmLkliiL pliis EAT3_RABIT : 56- 68: yfafp GeiLmrmLklviL plivs GLTP_BACSU : 88- 100: lvlgl GllLanvLkpgvG ldlsh GLTP_BACSU : 100- 111: lkpgv GldLsh-LakkdI helsg GLTP_ECOLI : 373- 384: tlgsv GipLeg-LafiaG vdril GLTT_BACCA : 305- 317: sfnld GstLyqaLaaifI aqlyg GLTT_BACST : 305- 317: sfnld GstLyqaLaaifI aqlyg SATT_HUMAN : 55- 67: sgvla GagLgaaLrglsL srtqv SATT_HUMAN : 79- 91: ylafp GemLlrmLrmiiL plvvc YB54_HAEIN : 33- 44: qtvfi GllLgl-LfgavL qsafe YGJU_ECOLI : 224- 236: lvvlv GcmLlvaLvvnpL lvwwk YGJU_HAEIN : 131- 142: apqav GqvLlt-LilnvV ddpln I 9: 14.0518 33( 20) G-x(3)-L-x(1,2)-L-x(4)-[FILMV] Occurences: 33(20) DCTA_ECOLI : 212- 224: tigky GvgtLvqLgqliI cfyit DCTA_RHILE : 88- 100: vgrva GkamLyfLtfstL aliig DCTA_RHILE : 340- 351: ihlsw GdqiLl-LlvamL sskga DCTA_RHIME : 337- 348: tplsy GdqiLl-LlvamL sskga DCTA_RHISN : 345- 356: tpisy GdqiLl-LliamL sskga EAT1_BOVIN : 240- 251: pgsvn GvnaLg-LvvfsM cfgfv EAT1_HUMAN : 240- 251: pgsvn GvnaLg-LvvfsM cfgfv EAT1_RAT : 240- 251: pgsvn GvnaLg-LvvfsM cfgfv EAT2_HUMAN : 42- 54: lcdkl GknlLltLtvfgV ilgav EAT2_HUMAN : 239- 250: lefkd GmnvLg-LigffI afgia EAT2_HUMAN : 328- 339: gliih GgifLp-LiyfvV trknp EAT2_MOUSE : 42- 54: mcdkl GknlLlsLtvfgV ilgav EAT2_MOUSE : 238- 249: lefkd GmnvLg-LigffI afgia EAT2_MOUSE : 327- 338: gliih GgifLp-LiyfvV trknp EAT2_RAT : 42- 54: mcdkl GknlLlsLtvfgV ilgav EAT2_RAT : 238- 249: lefkd GmnvLg-LigffI afgia EAT2_RAT : 327- 338: gliih GgifLp-LiyfvV trknp EAT3_HUMAN : 210- 221: gmysd GinvLg-LivfcL vfglv EAT3_RABIT : 209- 220: glysd GinvLg-LivfcL vfglv GLTP_BACSU : 219- 230: mfklv GtvfLg-LflilF vlfpl GLTP_ECOLI : 223- 235: tvanf GfssLwpLaklvL lvhfa GLTT_BACCA : 38- 49: ylqpi GdifLr-LikmiV ipivi GLTT_BACCA : 213- 225: tvskf GvesLipLsklvI vvyat GLTT_BACST : 38- 49: ylqpi GdifLr-LikmiV ipivi GLTT_BACST : 213- 225: tvskf GvesLipLsklvI vvyat SATT_HUMAN : 79- 91: ylafp GemlLrmLrmiiL plvvc SATT_HUMAN : 220- 231: gteie GmniLg-LvlfaL vlgva SATT_HUMAN : 309- 320: ghvih GgivLp-LiyfvF trknp YB54_HAEIN : 212- 224: eriaq GvetLnkLvmrlV rfvir YGJU_ECOLI : 224- 236: lvvlv GcmlLvaLvvnpL lvwwk YGJU_ECOLI : 347- 359: sgvag GsllLipLacnmF gisnd YGJU_HAEIN : 131- 142: apqav GqvlLt-LilnvV ddpln YGJU_HAEIN : 352- 364: sgvag GsllLipLacslF gisdd J 10: 13.9189 33( 20) L-x(4)-L-x(2,3)-L-x-[AGILV] Occurences: 33(20) DCTA_ECOLI : 364- 375: savgh LpvagLaliLgI drfms DCTA_RHILE : 418- 429: rwene LdtvqLaaaLgG qtged DCTA_RHIME : 415- 426: kwege LdqaqLsaaLgG easve DCTA_RHISN : 100- 110: amiyf LafstLal-LvG lvvan DCTA_RHISN : 423- 434: kwege LapaqLattLaG kaagg EAT1_BOVIN : 87- 97: sfpge LlmrmLqm-LvL pliis EAT1_HUMAN : 87- 97: sfpge LlmrmLqm-LvL pliis EAT1_RAT : 87- 97: sfpge LlmrmLqm-LvL pliis EAT2_HUMAN : 41- 51: rlcdk LgknlLlt-LtV fgvil EAT2_HUMAN : 96- 107: mlilp LiissLitgLsG ldaka EAT2_MOUSE : 41- 51: rmcdk LgknlLls-LtV fgvil EAT2_MOUSE : 96- 107: mlilp LiissLitgLsG ldaka EAT2_RAT : 41- 51: rmcdk LgknlLls-LtV fgvil EAT2_RAT : 96- 107: mlilp LiissLitgLsG ldaka EAT3_HUMAN : 104- 115: yfctt LiaviLgivLvV sikpg EAT3_HUMAN : 216- 227: invlg LivfcLvfgLvI gkmge EAT3_RABIT : 215- 226: invlg LivfcLvfgLvI gkmge GLTP_BACSU : 227- 237: flglf LilfvLfp-LvG lifqi GLTP_BACSU : 321- 331: qvdmt LsqqlLmm-LvL vmtsk GLTP_ECOLI : 13- 23: lawqi LfamvLgi-LlG sylhy GLTP_ECOLI : 169- 179: iffsv LfglgLss-LpA threp GLTT_BACCA : 303- 314: gysfn LdgstLyqaLaA ifiaq GLTT_BACST : 303- 314: gysfn LdgstLyqaLaA ifiaq SATT_HUMAN : 39- 49: rcagf LrrqaLvl-LtV sgvla SATT_HUMAN : 53- 64: tvsgv LagagLgaaLrG lslsr SATT_HUMAN : 105- 115: sgaas LdascLgr-LgG iavay SATT_HUMAN : 440- 451: leaig LpthdLpliLaV dwivd YB54_HAEIN : 395- 406: aaivv LstlgLpleLiG llisi YGJU_ECOLI : 18- 28: lahgs LvkqiLvg-LvL gilla YGJU_ECOLI : 23- 33: lvkqi LvglvLgi-LlA wiskp YGJU_ECOLI : 222- 233: qllvv LvgcmLlvaLvV npllv YGJU_HAEIN : 209- 219: lvaet LsdkgLva-LgG yvqll YGJU_HAEIN : 354- 365: vaggs LllipLacsLfG isddv K 11: 13.9189 32( 20) V-x-G-x(2,3)-L-x(2)-[AGILV] Occurences: 32(20) DCTA_ECOLI : 366- 374: vghlp VaGla-LilG idrfm DCTA_RHILE : 86- 95: qkvgr VaGkamLyfL tfstl DCTA_RHILE : 379- 387: vpsvp VaGma-LilG idrfm DCTA_RHIME : 376- 384: vpsvp VaGma-LilG idrfm DCTA_RHISN : 384- 392: vpsvp VaGma-LilG idrfm EAT1_BOVIN : 238- 247: pvpgs VnGvnaLglV vfsmc EAT1_BOVIN : 484- 492: rtttn VlGds-LgaG ivehl EAT1_HUMAN : 238- 247: pvpgs VnGvnaLglV vfsmc EAT1_HUMAN : 484- 492: rtttn VlGds-LgaG ivehl EAT1_RAT : 238- 247: pvpgs VnGvnaLglV vfsmc EAT1_RAT : 484- 492: rtttn VlGds-LgaG ivehl EAT2_HUMAN : 51- 59: lltlt VfGvi-LgaV cggll EAT2_HUMAN : 59- 67: vilga VcGgl-LrlA spihp EAT2_HUMAN : 133- 141: tiiaa VlGvi-LvlA ihpgn EAT2_MOUSE : 51- 59: llslt VfGvi-LgaV cggll EAT2_MOUSE : 59- 67: vilga VcGgl-LrlA spihp EAT2_MOUSE : 133- 141: tiiaa VlGvi-LvlA ihpgn EAT2_RAT : 51- 59: llslt VfGvi-LgaV cggll EAT2_RAT : 59- 67: vilga VcGgl-LrlA apihp EAT2_RAT : 133- 141: tiiaa VlGvi-LvlA ihpgn EAT3_HUMAN : 87- 96: aldsn VsGkigLraV vyyfc EAT3_RABIT : 86- 95: aldsn VsGkigLraV lyyfc GLTP_BACSU : 84- 92: vittl VlGlg-LllA nvlkp GLTP_ECOLI : 398- 406: rtaln VvGna-LavL viakw GLTT_BACCA : 388- 396: rtavn ViGns-LaaI imskw GLTT_BACST : 388- 396: rtavn ViGns-LaaI imskw SATT_HUMAN : 232- 240: vlfal VlGva-LkkL gsege SATT_HUMAN : 464- 472: ttvvn VeGda-LgaG ilhhl YB54_HAEIN : 271- 279: almfv VhGil-LffV kvnpv YGJU_ECOLI : 27- 35: ilvgl VlGil-LawI skpaa YGJU_ECOLI : 344- 352: cgasg VaGgs-LllI placn YGJU_HAEIN : 349- 357: cgasg VaGgs-LllI placs L 12: 13.8776 28( 20) L-x(0,1)-L-x-[AGSTV]-L Occurences: 28(20) DCTA_ECOLI : 260- 264: yiree L-LiVL gtsss DCTA_ECOLI : 332- 336: vhqit L-LiVL llssk DCTA_RHILE : 273- 277: yikee L-LlVL gtsss DCTA_RHIME : 270- 274: yikee L-LlVL gtsss DCTA_RHISN : 107- 111: fstla L-LvGL vvanv DCTA_RHISN : 278- 282: yikee L-LlVL gtsss EAT1_BOVIN : 352- 356: vfigg L-LqAL italg EAT1_HUMAN : 352- 356: vfigg L-LqAL italg EAT1_RAT : 352- 356: vfigg L-LqAL italg EAT2_HUMAN : 45- 49: klgkn L-LlTL tvfgv EAT2_MOUSE : 45- 49: klgkn L-LlSL tvfgv EAT2_RAT : 45- 49: klgkn L-LlSL tvfgv EAT3_HUMAN : 325- 329: gmaqa L-LtAL misss EAT3_RABIT : 324- 328: gmtqa L-LtAL misss GLTP_BACSU : 227- 232: flglf LiLfVL fplvg GLTP_ECOLI : 172- 177: svlfg LgLsSL pathr GLTP_ECOLI : 365- 369: vsfvv L-LaTL gsvgi GLTT_BACCA : 333- 337: sqqis L-LlVL mvtsk GLTT_BACCA : 355- 359: vsfvv L-LaTL gtvgi GLTT_BACST : 333- 337: sqqis L-LlVL mvtsk GLTT_BACST : 355- 359: vsfvv L-LaTL gtvgi SATT_HUMAN : 226- 231: mnilg LvLfAL vlgva YB54_HAEIN : 34- 38: tvfig L-LlGL lfgav YB54_HAEIN : 402- 407: tlglp LeLiGL lisie YGJU_ECOLI : 45- 49: aeavg L-LgTL fvgal YGJU_ECOLI : 218- 222: wgyaq L-LvVL vgcml YGJU_ECOLI : 227- 231: lvgcm L-LvAL vvnpl YGJU_HAEIN : 223- 227: ggyvq L-LaVL igtml M 13: 13.6594 30( 20) L-x(4)-L-x(3,4)-L-x-[AGILPV] Occurences: 30(20) DCTA_ECOLI : 364- 375: savgh LpvagLali-LgI drfms DCTA_RHILE : 418- 429: rwene LdtvqLaaa-LgG qtged DCTA_RHIME : 164- 176: dilqv LfisvLfgisLaI vgkka DCTA_RHIME : 188- 200: pvvdf LqaltLpifrLvA ilmka DCTA_RHIME : 415- 426: kwege LdqaqLsaa-LgG easve DCTA_RHISN : 172- 184: dilqv LfisvLfgisLaI vgkka DCTA_RHISN : 196- 208: avvdf LhaltLpifrLvA ilmka DCTA_RHISN : 423- 434: kwege LapaqLatt-LaG kaagg EAT1_BOVIN : 87- 99: sfpge LlmrmLqmlvLpL iissl EAT1_HUMAN : 87- 99: sfpge LlmrmLqmlvLpL iissl EAT1_RAT : 87- 99: sfpge LlmrmLqmlvLpL iissl EAT2_HUMAN : 96- 107: mlilp LiissLitg-LsG ldaka EAT2_MOUSE : 96- 107: mlilp LiissLitg-LsG ldaka EAT2_RAT : 96- 107: mlilp LiissLitg-LsG ldaka EAT3_HUMAN : 104- 115: yfctt LiaviLgiv-LvV sikpg EAT3_HUMAN : 216- 227: invlg LivfcLvfg-LvI gkmge EAT3_RABIT : 215- 226: invlg LivfcLvfg-LvI gkmge GLTP_BACSU : 85- 97: ittlv LglglLlanvLkP gvgld GLTP_ECOLI : 8- 20: nikfs LawqiLfamvLgI llgsy GLTT_BACCA : 303- 314: gysfn LdgstLyqa-LaA ifiaq GLTT_BACST : 303- 314: gysfn LdgstLyqa-LaA ifiaq SATT_HUMAN : 53- 64: tvsgv LagagLgaa-LrG lslsr SATT_HUMAN : 435- 447: tiaii LeaigLpthdLpL ilavd SATT_HUMAN : 440- 451: leaig LpthdLpli-LaV dwivd YB54_HAEIN : 395- 406: aaivv LstlgLple-LiG llisi YGJU_ECOLI : 13- 25: glfrr LahgsLvkqiLvG lvlgi YGJU_ECOLI : 18- 30: lahgs LvkqiLvglvLgI llawi YGJU_ECOLI : 222- 233: qllvv LvgcmLlva-LvV npllv YGJU_HAEIN : 204- 216: fgvfg LvaetLsdkgLvA lggyv YGJU_HAEIN : 354- 365: vaggs LllipLacs-LfG isddv N 14: 12.5102 35( 20) L-L-x(2)-L Occurences: 35(20) DCTA_ECOLI : 260- 264: yiree LLivL gtsss DCTA_ECOLI : 332- 336: vhqit LLivL llssk DCTA_RHILE : 273- 277: yikee LLlvL gtsss DCTA_RHIME : 270- 274: yikee LLlvL gtsss DCTA_RHISN : 107- 111: fstla LLvgL vvanv DCTA_RHISN : 278- 282: yikee LLlvL gtsss EAT1_BOVIN : 335- 339: vivlp LLyfL vtrkn EAT1_BOVIN : 352- 356: vfigg LLqaL italg EAT1_HUMAN : 335- 339: vivlp LLyfL vtrkn EAT1_HUMAN : 352- 356: vfigg LLqaL italg EAT1_RAT : 335- 339: vivlp LLyfL vtrkn EAT1_RAT : 352- 356: vfigg LLqaL italg EAT2_HUMAN : 45- 49: klgkn LLltL tvfgv EAT2_MOUSE : 45- 49: klgkn LLlsL tvfgv EAT2_RAT : 45- 49: klgkn LLlsL tvfgv EAT3_HUMAN : 325- 329: gmaqa LLtaL misss EAT3_RABIT : 324- 328: gmtqa LLtaL misss GLTP_BACSU : 325- 329: tlsqq LLmmL vlvmt GLTP_ECOLI : 365- 369: vsfvv LLatL gsvgi GLTT_BACCA : 333- 337: sqqis LLlvL mvtsk GLTT_BACCA : 355- 359: vsfvv LLatL gtvgi GLTT_BACST : 333- 337: sqqis LLlvL mvtsk GLTT_BACST : 355- 359: vsfvv LLatL gtvgi SATT_HUMAN : 82- 86: fpgem LLrmL rmiil SATT_HUMAN : 329- 333: npfrf LLglL apfat YB54_HAEIN : 2- 6: m LLvnL aifia YB54_HAEIN : 15- 19: iafll LLaqL yrkte YB54_HAEIN : 34- 38: tvfig LLlgL lfgav YB54_HAEIN : 35- 39: vfigl LLglL fgavl YGJU_ECOLI : 45- 49: aeavg LLgtL fvgal YGJU_ECOLI : 218- 222: wgyaq LLvvL vgcml YGJU_ECOLI : 227- 231: lvgcm LLvaL vvnpl YGJU_ECOLI : 350- 354: aggsl LLipL acnmf YGJU_HAEIN : 223- 227: ggyvq LLavL igtml YGJU_HAEIN : 355- 359: aggsl LLipL acslf O 15: 12.5102 38( 20) A-x-I-x(2)-A Occurences: 38(20) DCTA_ECOLI : 394- 399: vgngv AtIvvA kwvke DCTA_RHILE : 357- 362: sskga AgItgA gfitl DCTA_RHILE : 407- 412: vgnav AtIvvA rwene DCTA_RHIME : 354- 359: sskga AgItgA gfitl DCTA_RHIME : 404- 409: vgnav AtIvvA kwege DCTA_RHISN : 362- 367: sskga AgItgA gfitl DCTA_RHISN : 412- 417: ignav AtIvvA kwege EAT1_BOVIN : 409- 414: lyeal AaIfiA qvnnf EAT1_BOVIN : 436- 441: itata AsIgaA gipqa EAT1_BOVIN : 441- 446: asiga AgIpqA glvtm EAT1_HUMAN : 409- 414: lyeal AaIfiA qvnnf EAT1_HUMAN : 436- 441: itata AsIgaA gipqa EAT1_HUMAN : 441- 446: asiga AgIpqA glvtm EAT1_RAT : 409- 414: lyeal AaIfiA qvnnf EAT1_RAT : 436- 441: itata AsIgaA gipqa EAT1_RAT : 441- 446: asiga AgIpqA glvtm EAT2_HUMAN : 349- 354: pfslf AgIfqA wital EAT2_HUMAN : 408- 413: lyeav AaIfiA qmngv EAT2_HUMAN : 440- 445: asvga AsIpsA glvtm EAT2_MOUSE : 348- 353: pfsff AgIfqA wital EAT2_MOUSE : 407- 412: lyeav AaIfiA qmngv EAT2_MOUSE : 434- 439: ltatl AsIgaA sipsa EAT2_MOUSE : 439- 444: asiga AsIpsA glvtm EAT2_RAT : 348- 353: pfsff AgIfqA wital EAT2_RAT : 407- 412: lyeav AaIfiA qmngv EAT2_RAT : 434- 439: ltatl AsIgaA sipsa EAT2_RAT : 439- 444: asiga AsIpsA glvtm EAT3_HUMAN : 405- 410: itats AsIgaA gvpqa EAT3_RABIT : 404- 409: vtata AsIgaA gvpqa GLTP_BACSU : 147- 152: rndll AvIffA ilfgv GLTP_BACSU : 160- 165: fgvaa AgIgkA sepvm GLTP_ECOLI : 323- 328: lyqsi AaIfiA qlygi GLTT_BACCA : 313- 318: lyqal AaIfiA qlygi GLTT_BACST : 313- 318: lyqal AaIfiA qlygi SATT_HUMAN : 432- 437: gvlti AiIleA iglpt YB54_HAEIN : 115- 120: ttais AaIgiA mvhlf YGJU_ECOLI : 296- 301: siplg AtInmA gaait YGJU_HAEIN : 301- 306: siplg AnInmA gaait P 16: 12.0102 39( 20) V-L-x(2,3)-A Occurences: 39(20) DCTA_ECOLI : 13- 18: slyfq VLtaiA igill DCTA_ECOLI : 153- 157: gnilq VLlf-A vlfgf DCTA_ECOLI : 158- 163: vllfa VLfgfA lhrlg DCTA_ECOLI : 237- 242: lfvvl VLgsiA katgf DCTA_ECOLI : 413- 418: kkldd VLnnrA pdgkt DCTA_RHILE : 26- 31: hlyvq VLvaiA agill DCTA_RHILE : 171- 176: vlffs VLfgiA lamvg DCTA_RHILE : 250- 255: lfvfi VLgavA ryngf DCTA_RHIME : 23- 28: hlyvq VLaaiA agill DCTA_RHIME : 247- 252: lfvfi VLgavA ryngf DCTA_RHISN : 31- 36: hlyvq VLaaiA vgill DCTA_RHISN : 255- 260: lfvfm VLgavA ryngf EAT1_BOVIN : 390- 395: rvtrf VLpvgA tinmd EAT1_HUMAN : 390- 395: rvtrf VLpvgA tinmd EAT1_RAT : 390- 395: ritrf VLpvgA tinmd EAT2_HUMAN : 389- 394: rvtrf VLpvgA tinmd EAT2_MOUSE : 388- 393: rvtrf VLpvgA tinmd EAT2_RAT : 388- 393: rvtrf VLpvgA tinmd EAT3_HUMAN : 290- 295: lymat VLtglA ihsiv EAT3_HUMAN : 359- 364: ritrf VLpvgA tinmd EAT3_HUMAN : 453- 457: rtmvn VLgd-A fgtgi EAT3_RABIT : 289- 294: lymvt VLsglA ihsiv EAT3_RABIT : 358- 363: ritrf VLpvgA tinmd EAT3_RABIT : 452- 456: rtvvn VLgd-A fgtgi GLTP_BACSU : 195- 200: tapig VLalmA asvgq GLTP_BACSU : 348- 353: sgslv VLlatA navgl GLTP_ECOLI : 248- 253: ffalv VLgivA rlcgl GLTP_ECOLI : 405- 409: gnala VLvi-A kwehk GLTT_BACCA : 238- 243: ffifa VLggvA klfgi GLTT_BACST : 238- 243: ffifv VLggvA klfgi SATT_HUMAN : 52- 56: ltvsg VLag-A glgaa SATT_HUMAN : 232- 236: vlfal VLgv-A lkklg SATT_HUMAN : 428- 432: vpagg VLti-A iilea YB54_HAEIN : 43- 47: llfga VLqs-A fekpl YB54_HAEIN : 145- 149: aaqgk VLdk-A gqvsn YGJU_ECOLI : 309- 313: aitit VLtl-A avntl YGJU_ECOLI : 309- 314: aitit VLtlaA vntlg YGJU_ECOLI : 393- 397: nsstd VLft-A aacqa YGJU_ECOLI : 393- 398: nsstd VLftaA acqae YGJU_HAEIN : 178- 183: datkn VLsdfA egvsk YGJU_HAEIN : 398- 402: nsstd VLft-A avcme YGJU_HAEIN : 398- 403: nsstd VLftaA vcmee Q 17: 12.0102 39( 20) G-x(0,1)-I-x(3)-L Occurences: 39(20) DCTA_ECOLI : 148- 154: gafas GnIlqvL lfavl DCTA_RHILE : 161- 167: gafad GdIlqvL ffsvl DCTA_RHIME : 158- 164: gafae GdIlqvL fisvl DCTA_RHISN : 166- 172: gafae GdIlqvL fisvl EAT1_BOVIN : 308- 314: emedm GvIggqL amytv EAT1_BOVIN : 492- 497: dslga G-IvehL srhel EAT1_HUMAN : 308- 314: emedm GvIggqL amytv EAT1_HUMAN : 492- 497: dslga G-IvehL srhel EAT1_RAT : 308- 314: emedm GvIggqL amytv EAT1_RAT : 492- 497: dslga G-IvehL srhel EAT2_HUMAN : 328- 334: gliih GgIflpL iyfvv EAT2_HUMAN : 329- 334: liihg G-IflpL iyfvv EAT2_HUMAN : 491- 496: dsfga G-IvyhL sksel EAT2_MOUSE : 327- 333: gliih GgIflpL iyfvv EAT2_MOUSE : 328- 333: liihg G-IflpL iyfvv EAT2_MOUSE : 490- 495: dsfga G-IvyhL sksel EAT2_RAT : 327- 333: gliih GgIflpL iyfvv EAT2_RAT : 328- 333: liihg G-IflpL iyfvv EAT2_RAT : 490- 495: dsfga G-IvyhL sksel EAT3_HUMAN : 215- 221: ginvl GlIvfcL vfglv EAT3_HUMAN : 461- 466: dafgt G-IvekL skkel EAT3_RABIT : 214- 220: ginvl GlIvfcL vfglv EAT3_RABIT : 460- 465: dafgt G-IvekL skkel GLTP_BACSU : 207- 212: svgqy G-IellL pmfkl GLTP_ECOLI : 45- 51: llspa GdIfihL ikmiv GLTP_ECOLI : 250- 255: alvvl G-IvarL cglsv GLTT_BACCA : 38- 44: ylqpi GdIflrL ikmiv GLTT_BACCA : 374- 379: lafia G-IdriL dmart GLTT_BACST : 38- 44: ylqpi GdIflrL ikmiv GLTT_BACST : 374- 379: lafia G-IdriL dmart SATT_HUMAN : 309- 315: ghvih GgIvlpL iyfvf SATT_HUMAN : 310- 315: hvihg G-IvlpL iyfvf SATT_HUMAN : 404- 410: velna GqIftiL vtata SATT_HUMAN : 472- 477: dalga G-IlhhL nqkat YB54_HAEIN : 431- 437: gamva GtItdrL lnk YGJU_ECOLI : 319- 324: avntl G-IpvdL ptall YGJU_ECOLI : 373- 379: qvvav GfIigvL qdsce YGJU_HAEIN : 26- 31: aglvl G-IvvaL isapl YGJU_HAEIN : 378- 384: qmigv GfIigiL qdste R 18: 12.0102 35( 20) V-x(1,2)-A-x(3)-G Occurences: 35(20) DCTA_ECOLI : 13- 20: slyfq VltAiaiG illgh DCTA_ECOLI : 136- 143: afimd VipAsviG afasg DCTA_ECOLI : 141- 148: vipas VigAfasG nilqv DCTA_RHILE : 26- 33: hlyvq VlvAiaaG illgh DCTA_RHILE : 155- 161: iptti Vg-AfadG dilqv DCTA_RHILE : 421- 428: neldt VqlAaalG gqtge DCTA_RHIME : 23- 30: hlyvq VlaAiaaG illgh DCTA_RHIME : 152- 158: ipttl Vg-AfaeG dilqv DCTA_RHIME : 407- 413: avati Vv-AkweG eldqa DCTA_RHISN : 31- 38: hlyvq VlaAiavG illgy DCTA_RHISN : 160- 166: ipttl Vg-AfaeG dilqv DCTA_RHISN : 415- 421: avati Vv-AkweG elapa EAT1_BOVIN : 55- 61: fvllt Vt-AvivG tilgf EAT1_HUMAN : 55- 61: fvllt Vt-AvivG tilgf EAT1_RAT : 55- 61: fvllt Vs-AvivG tilgf EAT2_HUMAN : 139- 145: lgvil Vl-AihpG npklk EAT2_HUMAN : 308- 314: ikdle Vv-ArqlG mymvt EAT2_MOUSE : 139- 145: lgvil Vl-AihpG npklk EAT2_MOUSE : 307- 313: ikdle Vv-ArqlG mymit EAT2_RAT : 139- 145: lgvil Vl-AihpG npklk EAT2_RAT : 307- 313: ikdle Vv-ArqlG mymit EAT3_HUMAN : 26- 32: vllst Va-AvvlG ittgv EAT3_RABIT : 25- 31: lllst Vv-AvvlG ivigv GLTP_BACSU : 54- 61: vfsti VigAagsG smkkm GLTP_BACSU : 157- 163: ailfg Va-AagiG kasep GLTP_ECOLI : 71- 78: vgiag VgdAkqlG rigak GLTT_BACCA : 20- 26: ilgii Vg-AifyG npkva GLTT_BACST : 20- 26: ilgii Vg-AifyG npkva SATT_HUMAN : 227- 234: nilgl VlfAlvlG valkk YB54_HAEIN : 193- 199: sallg Va-AlslG kedqa YB54_HAEIN : 350- 357: pamla VmvApmvG idpfs YB54_HAEIN : 424- 431: rtaln VngAmvaG titdr YGJU_ECOLI : 154- 160: yigil Vw-AiglG falrh YGJU_HAEIN : 157- 163: anfig Vl-AwsiG lglal YGJU_HAEIN : 370- 376: gisdd Va-AqmiG vgfii S 19: 12.0102 39( 20) L-x(1,2)-L-x(2)-S Occurences: 39(20) DCTA_ECOLI : 261- 267: ireel LivLgtS ssesa DCTA_ECOLI : 333- 339: hqitl LivLllS skgaa DCTA_RHILE : 92- 98: agkam LyfLtfS tlali DCTA_RHILE : 164- 170: adgdi LqvLffS vlfgi DCTA_RHILE : 274- 280: ikeel LlvLgtS sseaa DCTA_RHILE : 275- 280: keell Lv-LgtS sseaa DCTA_RHIME : 161- 167: aegdi LqvLfiS vlfgi DCTA_RHIME : 271- 277: ikeel LlvLgtS sseaa DCTA_RHIME : 272- 277: keell Lv-LgtS sseaa DCTA_RHISN : 169- 175: aegdi LqvLfiS vlfgi DCTA_RHISN : 279- 285: ikeel LlvLgtS sseaa DCTA_RHISN : 280- 285: keell Lv-LgtS sseaa EAT1_BOVIN : 97- 102: lqmlv Lp-LiiS slvtg EAT1_HUMAN : 97- 102: lqmlv Lp-LiiS slvtg EAT1_RAT : 97- 102: lqmlv Lp-LiiS slvtg EAT2_HUMAN : 94- 99: lkmli Lp-LiiS slitg EAT2_MOUSE : 94- 99: lkmli Lp-LiiS slitg EAT2_RAT : 94- 99: lkmli Lp-LiiS slitg EAT3_HUMAN : 69- 74: lklii Lp-LiiS smitg EAT3_HUMAN : 326- 332: maqal LtaLmiS sssat EAT3_RABIT : 68- 73: lklvi Lp-LivS smitg EAT3_RABIT : 325- 331: mtqal LtaLmiS sssat GLTP_BACSU : 302- 307: cdgss Ly-LsvS cifla GLTP_ECOLI : 18- 24: lfamv LgiLlgS ylhyh GLTP_ECOLI : 169- 175: iffsv LfgLglS slpat GLTP_ECOLI : 271- 276: ilkde Li-LayS tasse GLTT_BACCA : 261- 266: ilkde Li-LayS tasse GLTT_BACCA : 414- 420: kgkqy LaeLqqS a GLTT_BACST : 261- 266: ilkde Li-LayS tasse SATT_HUMAN : 44- 50: lrrqa LvlLtvS gvlag SATT_HUMAN : 62- 68: glgaa LrgLslS rtqvt SATT_HUMAN : 123- 129: vayfg LttLsaS alava SATT_HUMAN : 153- 158: lqssd Lg-LedS gpppv YB54_HAEIN : 404- 410: glple LigLliS iepii YGJU_ECOLI : 110- 115: afpst Lh-LssS agdis YGJU_ECOLI : 251- 257: pfplv LlcLreS gvyaf YGJU_ECOLI : 252- 257: fplvl Lc-LreS gvyaf YGJU_HAEIN : 323- 328: aavht Lg-LevS fvsal YGJU_HAEIN : 356- 362: ggsll LipLacS lfgis T 20: 12.0102 43( 20) L-x-L-x(1,2)-L Occurences: 43(20) DCTA_ECOLI : 369- 373: lpvag LaLi-L gidrf DCTA_RHILE : 273- 277: yikee LlLv-L gtsss DCTA_RHIME : 270- 274: yikee LlLv-L gtsss DCTA_RHISN : 278- 282: yikee LlLv-L gtsss EAT1_BOVIN : 95- 99: rmlqm LvLp-L iissl EAT1_HUMAN : 95- 99: rmlqm LvLp-L iissl EAT1_RAT : 95- 99: rmlqm LvLp-L iissl EAT2_HUMAN : 33- 37: pkhrh LgLr-L cdklg EAT2_HUMAN : 45- 49: klgkn LlLt-L tvfgv EAT2_HUMAN : 92- 96: rmlkm LiLp-L iissl EAT2_MOUSE : 45- 49: klgkn LlLs-L tvfgv EAT2_MOUSE : 92- 96: rmlkm LiLp-L iissl EAT2_RAT : 45- 49: klgkn LlLs-L tvfgv EAT2_RAT : 92- 96: rmlkm LiLp-L iissl EAT3_HUMAN : 64- 69: ilmrm LkLiiL pliis EAT3_RABIT : 63- 68: ilmrm LkLviL plivs GLTP_BACSU : 83- 87: evitt LvLg-L gllla GLTP_BACSU : 85- 89: ittlv LgLg-L llanv GLTP_BACSU : 85- 90: ittlv LgLglL lanvl GLTP_BACSU : 87- 91: tlvlg LgLl-L anvlk GLTP_BACSU : 101- 106: kpgvg LdLshL akkdi GLTP_BACSU : 223- 227: vgtvf LgLf-L ilfvl GLTP_BACSU : 225- 229: tvflg LfLi-L fvlfp GLTP_BACSU : 227- 232: flglf LiLfvL fplvg GLTP_ECOLI : 172- 177: svlfg LgLssL pathr GLTP_ECOLI : 343- 347: wqeii LvLt-L mvtsk GLTT_BACCA : 333- 337: sqqis LlLv-L mvtsk GLTT_BACST : 333- 337: sqqis LlLv-L mvtsk SATT_HUMAN : 224- 228: egmni LgLv-L falvl SATT_HUMAN : 226- 231: mnilg LvLfaL vlgva SATT_HUMAN : 445- 449: lpthd LpLi-L avdwi YB54_HAEIN : 14- 19: fiafl LlLaqL yrkte YB54_HAEIN : 34- 38: tvfig LlLg-L lfgav YB54_HAEIN : 34- 39: tvfig LlLglL fgavl YB54_HAEIN : 398- 402: vvlst LgLp-L eligl YB54_HAEIN : 400- 404: lstlg LpLe-L iglli YB54_HAEIN : 402- 407: tlglp LeLigL lisie YGJU_ECOLI : 26- 31: qilvg LvLgiL lawis YGJU_ECOLI : 61- 65: avapi LvLm-L vmasi YGJU_ECOLI : 85- 89: nirpi LfLy-L lgtfs YGJU_ECOLI : 85- 90: nirpi LfLylL gtfsa YGJU_ECOLI : 249- 254: rnpfp LvLlcL resgv YGJU_ECOLI : 349- 354: vaggs LlLipL acnmf YGJU_HAEIN : 135- 139: vgqvl LtLi-L nvvdd YGJU_HAEIN : 164- 168: awsig LgLa-L rhasd YGJU_HAEIN : 354- 359: vaggs LlLipL acslf Number of patterns evaluated by Pratt:14205 Total running time: 21 seconds