------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 5 sequences from file NA_ALANINE_SYMP PATTERN CONSERVATION: CM: min Nr of Seqs to Match 5 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename NA_ALANINE_SYMP.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: ALCP_THEP3 445 DAGA_ALTHA 542 Y883_HAEIN 456 YAAJ_ECOLI 476 YAAJ_HAEIN 481 Pratt run started at Thu Feb 6 20:21:54 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 65.7208 5( 5) F-x(3,4)-T-x(1,2)-L-x(4)-G-x-G-N-x(2)-G-x-A-x(5)-G-G-x(2)-A-x-F-W-M-W-x(5)-G 2: 60.5508 5( 5) L-x(4)-G-x-G-N-x(2)-G-x-A-x(1,3)-A-x(1,3)-G-G-x(2)-A-x-F-W-M-W-x(5)-G 3: 56.3807 5( 5) G-x-G-N-x(2)-G-x-A-x(1,3)-A-x(1,3)-G-G-x(2)-A-x-F-W-M-W-x(5)-G 4: 52.2107 5( 5) G-N-x(2)-G-x-A-x(1,3)-A-x(1,3)-G-G-x(2)-A-x-F-W-M-W-x(5)-G 5: 48.0406 5( 5) N-x(2)-G-x-A-x(1,3)-A-x(1,3)-G-G-x(2)-A-x-F-W-M-W-x(5)-G 6: 40.2005 7( 5) A-x(0,2)-A-x(4,5)-G-x(5)-A-x(3)-G-x(2)-R-x(4)-N-E-x-G-x-G 7: 39.7005 5( 5) G-x(1,3)-A-x(1,3)-G-G-x(2)-A-x-F-W-M-W-x(5)-G 8: 37.5305 5( 5) A-x(5)-G-G-x(2)-A-x-F-W-M-W-x(5)-G 9: 36.5305 6( 5) A-x(1,3)-G-G-x(2)-A-x-F-W-M-W-x(5)-G 10: 36.0305 5( 5) G-x(0,2)-G-x(4,5)-A-x(3)-G-x(2)-R-x(4)-N-E-x-G-x-G 11: 33.3604 5( 5) G-G-x(2)-A-x-F-W-M-W-x(5)-G 12: 32.8604 6( 5) G-x(4,5)-A-x(3)-G-x(2)-R-x(4)-N-E-x-G-x-G 13: 31.3604 5( 5) L-x(2,4)-A-x(3,5)-G-x(2)-R-x(4)-N-E-x-G-x-G 14: 29.1904 5( 5) A-x(3)-G-x(2)-R-x(4)-N-E-x-G-x-G 15: 29.1904 5( 5) G-x(2)-A-x-F-W-M-W-x(5)-G 16: 28.1904 9( 5) G-x(0,2)-A-x-F-W-M-W-x(5)-G 17: 25.0203 5( 5) A-x-F-W-M-W-x(5)-G 18: 24.0203 6( 5) A-x(0,1)-G-G-x(1,2)-G-A-x-F 19: 23.5203 5( 5) G-x(2)-P-x(0,2)-A-x(0,1)-A-x-A-x(4)-P 20: 23.5203 5( 5) G-x(4)-P-x(0,2)-A-x(0,1)-A-x-A-x(4)-P Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 131.6880 5( 5) F-x(3,4)-T-x(1,2)-L-[AS]-[AGS]-x-[IV]-G-[STV]-G-N-[ILV]-[AGV]-G-[TV]-A-x-[AG]-[IV]-[AQST]-x-G-G-[EP]-[AG]-A-[ILV]-F-W-M-W-[LMV]-x-[AT]-[FL]-[FIL]-G-x-[AST]-[ST]-x-[FY]-[AV]-E B 2: 120.5439 5( 5) L-[AS]-[AGS]-x-[IV]-G-[STV]-G-N-[ILV]-[AGV]-G-[TV]-A-x(1,3)-A-x(1,3)-G-G-[EP]-[AG]-A-[ILV]-F-W-M-W-[LMV]-x-[AT]-[FL]-[FIL]-G-x-[AST]-[ST]-x-[FY]-[AV]-E-[CSV] C 3: 107.3765 5( 5) G-[STV]-G-N-[ILV]-[AGV]-G-[TV]-A-x(1,3)-A-x(1,3)-G-G-[EP]-[AG]-A-[ILV]-F-W-M-W-[LMV]-x-[AT]-[FL]-[FIL]-G-x-[AST]-[ST]-x-[FY]-[AV]-E-[CSV] D 4: 100.6178 5( 5) G-N-[ILV]-[AGV]-G-[TV]-A-x(1,3)-A-x(1,3)-G-G-[EP]-[AG]-A-[ILV]-F-W-M-W-[LMV]-x-[AT]-[FL]-[FIL]-G-x-[AST]-[ST]-x-[FY]-[AV]-E-[CSV] E 5: 96.4477 5( 5) N-[ILV]-[AGV]-G-[TV]-A-x(1,3)-A-x(1,3)-G-G-[EP]-[AG]-A-[ILV]-F-W-M-W-[LMV]-x-[AT]-[FL]-[FIL]-G-x-[AST]-[ST]-x-[FY]-[AV]-E-[CSV] F 6: 95.5977 7( 5) A-x(0,2)-A-x(4,5)-G-x(2)-[FLV]-x(2)-A-[FIMV]-x(2)-G-[FIV]-x-R-[GS]-[ILM]-[FY]-[AS]-N-E-[AS]-G-x-G-[ST]-[AGT]-[AP]-x-[APS]-x-A-[AS]-A-x-[ASTV]-x(2)-P-x(2)-[AEQ] G 7: 94.6164 5( 5) G-x(0,2)-G-x(4,5)-A-[FIMV]-x(2)-G-[FIV]-x-R-[GS]-[ILM]-[FY]-[AS]-N-E-[AS]-G-x-G-[ST]-[AGT]-[AP]-x-[APS]-x-A-[AS]-A-x-[ASTV]-x(2)-P-x(2)-[AEQ]-[AG]-x-[GIV] H 8: 91.4463 6( 5) G-x(4,5)-A-[FIMV]-x(2)-G-[FIV]-x-R-[GS]-[ILM]-[FY]-[AS]-N-E-[AS]-G-x-G-[ST]-[AGT]-[AP]-x-[APS]-x-A-[AS]-A-x-[ASTV]-x(2)-P-x(2)-[AEQ]-[AG]-x-[GIV] I 9: 87.7763 5( 5) A-[FIMV]-x(2)-G-[FIV]-x-R-[GS]-[ILM]-[FY]-[AS]-N-E-[AS]-G-x-G-[ST]-[AGT]-[AP]-x-[APS]-x-A-[AS]-A-x-[ASTV]-x(2)-P-x(2)-[AEQ]-[AG]-x-[GIV] J 10: 87.6189 5( 5) L-x(2,4)-A-x(3,5)-G-[FIV]-x-R-[GS]-[ILM]-[FY]-[AS]-N-E-[AS]-G-x-G-[ST]-[AGT]-[AP]-x-[APS]-x-A-[AS]-A-x-[ASTV]-x(2)-P-x(2)-[AEQ]-[AG]-x-[GIV] K 11: 86.1283 5( 5) A-x-[AG]-[IV]-[AQST]-x-G-G-[EP]-[AG]-A-[ILV]-F-W-M-W-[LMV]-x-[AT]-[FL]-[FIL]-G-x-[AST]-[ST]-x-[FY]-[AV]-E-[CSV] L 12: 79.6749 5( 5) G-x(1,3)-A-x(1,3)-G-G-[EP]-[AG]-A-[ILV]-F-W-M-W-[LMV]-x-[AT]-[FL]-[FIL]-G-x-[AST]-[ST]-x-[FY]-[AV]-E-[CSV] M 13: 76.5049 6( 5) A-x(1,3)-G-G-[EP]-[AG]-A-[ILV]-F-W-M-W-[LMV]-x-[AT]-[FL]-[FIL]-G-x-[AST]-[ST]-x-[FY]-[AV]-E-[CSV] N 14: 73.8905 5( 5) G-x-G-[AS]-x-P-x(0,2)-A-x(0,1)-A-[AS]-A-x-[ASTV]-x(2)-P-[APV]-x-[EPQ]-[AG]-[AIL]-x-[GQS]-x(2)-[EGQS]-x(2)-[GILV]-x(2)-[FIM]-x(3)-[TV]-x-[CT]-[AGT]-[AILV]-x-[AIL]-[LMV] O 15: 73.3348 5( 5) G-G-[EP]-[AG]-A-[ILV]-F-W-M-W-[LMV]-x-[AT]-[FL]-[FIL]-G-x-[AST]-[ST]-x-[FY]-[AV]-E-[CSV] P 16: 69.7205 5( 5) G-[AS]-x-P-x(0,2)-A-x(0,1)-A-[AS]-A-x-[ASTV]-x(2)-P-[APV]-x-[EPQ]-[AG]-[AIL]-x-[GQS]-x(2)-[EGQS]-x(2)-[GILV]-x(2)-[FIM]-x(3)-[TV]-x-[CT]-[AGT]-[AILV]-x-[AIL]-[LMV] Q 17: 69.1647 5( 5) G-[EP]-[AG]-A-[ILV]-F-W-M-W-[LMV]-x-[AT]-[FL]-[FIL]-G-x-[AST]-[ST]-x-[FY]-[AV]-E-[CSV] R 18: 61.8245 9( 5) G-x(0,2)-A-[ILV]-F-W-M-W-[LMV]-x-[AT]-[FL]-[FIL]-G-x-[AST]-[ST]-x-[FY]-[AV]-E-[CSV] S 19: 58.6544 5( 5) A-[ILV]-F-W-M-W-[LMV]-x-[AT]-[FL]-[FIL]-G-x-[AST]-[ST]-x-[FY]-[AV]-E-[CSV] T 20: 51.3791 5( 5) L-[AS]-[AGS]-x-[IV]-G-[STV]-G-N-[ILV]-[AGV]-G-[TV]-A-x(1,3)-A-x(1,3)-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 131.6880 5( 5) F-x(3,4)-T-x(1,2)-L-[AS]-[AGS]-x-[IV]-G-[STV]-G-N-[ILV]-[AGV]-G-[TV]-A-x-[AG]-[IV]-[AQST]-x-G-G-[EP]-[AG]-A-[ILV]-F-W-M-W-[LMV]-x-[AT]-[FL]-[FIL]-G-x-[AST]-[ST]-x-[FY]-[AV]-E Occurences: 5(5) ALCP_THEP3 : 18- 66: agvss Fqal-TmsLSGrIGVGNVAGTAtGIAyGGPGAVFWMWViTFIGaATaYVE stwrk DAGA_ALTHA : 54- 102: gdtth FqalaTa-LSGtVGTGNIGGVAlAISiGGPAALFWMWMtAFFGmTTkFVE vtlsh Y883_HAEIN : 63- 111: gdvss FaalcTa-LAAtIGTGNIVGVAtAVQaGGPGAIFWMWLvALLGmATkYAE cllav YAAJ_ECOLI : 61- 109: gglts FqslcTs-LAArVGSGNLAGVAlAITaGGPGAVFWMWVaAFIGmATsFAE cslaq YAAJ_HAEIN : 74- 122: ssltp FqaftTg-LASrVGVGNIGGVAtAIAlGGEGAVFWMWVtAFIGmSSaFAE stlaq YAAJ_HAEIN : 74- 122: ssltp Fqaf-TtgLASrVGVGNIGGVAtAIAlGGEGAVFWMWVtAFIGmSSaFAE stlaq B 2: 120.5439 5( 5) L-[AS]-[AGS]-x-[IV]-G-[STV]-G-N-[ILV]-[AGV]-G-[TV]-A-x(1,3)-A-x(1,3)-G-G-[EP]-[AG]-A-[ILV]-F-W-M-W-[LMV]-x-[AT]-[FL]-[FIL]-G-x-[AST]-[ST]-x-[FY]-[AV]-E-[CSV] Occurences: 5(5) ALCP_THEP3 : 25- 67: altms LSGrIGVGNVAGTAtgiAy--GGPGAVFWMWViTFIGaATaYVES twrkf DAGA_ALTHA : 61- 103: alata LSGtVGTGNIGGVAl--AisiGGPAALFWMWMtAFFGmTTkFVEV tlshk Y883_HAEIN : 70- 112: alcta LAAtIGTGNIVGVAt--AvqaGGPGAIFWMWLvALLGmATkYAEC llavk YAAJ_ECOLI : 68- 110: slcts LAArVGSGNLAGVAl--AitaGGPGAVFWMWVaAFIGmATsFAEC slaql YAAJ_HAEIN : 81- 123: afttg LASrVGVGNIGGVAtaiAl--GGEGAVFWMWVtAFIGmSSaFAES tlaql YAAJ_HAEIN : 81- 123: afttg LASrVGVGNIGGVAt--AialGGEGAVFWMWVtAFIGmSSaFAES tlaql C 3: 107.3765 5( 5) G-[STV]-G-N-[ILV]-[AGV]-G-[TV]-A-x(1,3)-A-x(1,3)-G-G-[EP]-[AG]-A-[ILV]-F-W-M-W-[LMV]-x-[AT]-[FL]-[FIL]-G-x-[AST]-[ST]-x-[FY]-[AV]-E-[CSV] Occurences: 5(5) ALCP_THEP3 : 30- 67: lsgri GVGNVAGTAtgiAy--GGPGAVFWMWViTFIGaATaYVES twrkf DAGA_ALTHA : 66- 103: lsgtv GTGNIGGVAl--AisiGGPAALFWMWMtAFFGmTTkFVEV tlshk Y883_HAEIN : 75- 112: laati GTGNIVGVAt--AvqaGGPGAIFWMWLvALLGmATkYAEC llavk YAAJ_ECOLI : 73- 110: laarv GSGNLAGVAl--AitaGGPGAVFWMWVaAFIGmATsFAEC slaql YAAJ_HAEIN : 86- 123: lasrv GVGNIGGVAtaiAl--GGEGAVFWMWVtAFIGmSSaFAES tlaql YAAJ_HAEIN : 86- 123: lasrv GVGNIGGVAt--AialGGEGAVFWMWVtAFIGmSSaFAES tlaql D 4: 100.6178 5( 5) G-N-[ILV]-[AGV]-G-[TV]-A-x(1,3)-A-x(1,3)-G-G-[EP]-[AG]-A-[ILV]-F-W-M-W-[LMV]-x-[AT]-[FL]-[FIL]-G-x-[AST]-[ST]-x-[FY]-[AV]-E-[CSV] Occurences: 5(5) ALCP_THEP3 : 32- 67: grigv GNVAGTAtgiAy--GGPGAVFWMWViTFIGaATaYVES twrkf DAGA_ALTHA : 68- 103: gtvgt GNIGGVAl--AisiGGPAALFWMWMtAFFGmTTkFVEV tlshk Y883_HAEIN : 77- 112: atigt GNIVGVAt--AvqaGGPGAIFWMWLvALLGmATkYAEC llavk YAAJ_ECOLI : 75- 110: arvgs GNLAGVAl--AitaGGPGAVFWMWVaAFIGmATsFAEC slaql YAAJ_HAEIN : 88- 123: srvgv GNIGGVAtaiAl--GGEGAVFWMWVtAFIGmSSaFAES tlaql YAAJ_HAEIN : 88- 123: srvgv GNIGGVAt--AialGGEGAVFWMWVtAFIGmSSaFAES tlaql E 5: 96.4477 5( 5) N-[ILV]-[AGV]-G-[TV]-A-x(1,3)-A-x(1,3)-G-G-[EP]-[AG]-A-[ILV]-F-W-M-W-[LMV]-x-[AT]-[FL]-[FIL]-G-x-[AST]-[ST]-x-[FY]-[AV]-E-[CSV] Occurences: 5(5) ALCP_THEP3 : 33- 67: rigvg NVAGTAtgiAy--GGPGAVFWMWViTFIGaATaYVES twrkf DAGA_ALTHA : 69- 103: tvgtg NIGGVAl--AisiGGPAALFWMWMtAFFGmTTkFVEV tlshk Y883_HAEIN : 78- 112: tigtg NIVGVAt--AvqaGGPGAIFWMWLvALLGmATkYAEC llavk YAAJ_ECOLI : 76- 110: rvgsg NLAGVAl--AitaGGPGAVFWMWVaAFIGmATsFAEC slaql YAAJ_HAEIN : 89- 123: rvgvg NIGGVAtaiAl--GGEGAVFWMWVtAFIGmSSaFAES tlaql YAAJ_HAEIN : 89- 123: rvgvg NIGGVAt--AialGGEGAVFWMWVtAFIGmSSaFAES tlaql F 6: 95.5977 7( 5) A-x(0,2)-A-x(4,5)-G-x(2)-[FLV]-x(2)-A-[FIMV]-x(2)-G-[FIV]-x-R-[GS]-[ILM]-[FY]-[AS]-N-E-[AS]-G-x-G-[ST]-[AGT]-[AP]-x-[APS]-x-A-[AS]-A-x-[ASTV]-x(2)-P-x(2)-[AEQ] Occurences: 7(5) ALCP_THEP3 : 196- 244: lifks AfgAdqvf-GgiLgsAVmwGVkRGLYANEAGqGTGAhPaAAAeVshPakQ glvqa DAGA_ALTHA : 239- 286: afsgs Aa-Aggfl-GasFayAFnrGVnRGLFSNEAGqGSAPiAhASAkAdePvsE givsi DAGA_ALTHA : 239- 286: afsgs A--AaggflGasFayAFnrGVnRGLFSNEAGqGSAPiAhASAkAdePvsE givsi DAGA_ALTHA : 240- 286: fsgsa A--Aggfl-GasFayAFnrGVnRGLFSNEAGqGSAPiAhASAkAdePvsE givsi Y883_HAEIN : 249- 296: afdpq A--AlggavGltVmkAIqsGVaRGIFSNESGlGSAPiAaAAAqTrePvrQ glism YAAJ_ECOLI : 247- 293: fgwqe A--Aggaa-GytLsqAItnGFqRSMFSNEAGmGSTPnAaAAAaSwpPhpA aqgiv YAAJ_HAEIN : 259- 306: afsfd Aa-Aggmf-GalVskAMmmGIkRGLFSNEAGmGSAPnSaAAAhVkhPvsQ glvqm YAAJ_HAEIN : 259- 306: afsfd A--AaggmfGalVskAMmmGIkRGLFSNEAGmGSAPnSaAAAhVkhPvsQ glvqm YAAJ_HAEIN : 260- 306: fsfda A--Aggmf-GalVskAMmmGIkRGLFSNEAGmGSAPnSaAAAhVkhPvsQ glvqm G 7: 94.6164 5( 5) G-x(0,2)-G-x(4,5)-A-[FIMV]-x(2)-G-[FIV]-x-R-[GS]-[ILM]-[FY]-[AS]-N-E-[AS]-G-x-G-[ST]-[AGT]-[AP]-x-[APS]-x-A-[AS]-A-x-[ASTV]-x(2)-P-x(2)-[AEQ]-[AG]-x-[GIV] Occurences: 5(5) ALCP_THEP3 : 204- 247: adqvf G--Gilgs-AVmwGVkRGLYANEAGqGTGAhPaAAAeVshPakQGlV qafsi DAGA_ALTHA : 243- 289: saaag GflGasfayAFnrGVnRGLFSNEAGqGSAPiAhASAkAdePvsEGiV silep Y883_HAEIN : 253- 299: qaalg GavGltvmkAIqsGVaRGIFSNESGlGSAPiAaAAAqTrePvrQGlI smtgt YAAJ_ECOLI : 250- 296: qeaag GaaGytlsqAItnGFqRSMFSNEAGmGSTPnAaAAAaSwpPhpAAqG ivqmi YAAJ_HAEIN : 263- 309: daaag GmfGalvskAMmmGIkRGLFSNEAGmGSAPnSaAAAhVkhPvsQGlV qmlgv H 8: 91.4463 6( 5) G-x(4,5)-A-[FIMV]-x(2)-G-[FIV]-x-R-[GS]-[ILM]-[FY]-[AS]-N-E-[AS]-G-x-G-[ST]-[AGT]-[AP]-x-[APS]-x-A-[AS]-A-x-[ASTV]-x(2)-P-x(2)-[AEQ]-[AG]-x-[GIV] Occurences: 6(5) ALCP_THEP3 : 204- 247: adqvf GgilgsAVmwGVkRGLYANEAGqGTGAhPaAAAeVshPakQGlV qafsi ALCP_THEP3 : 205- 247: dqvfg Gilgs-AVmwGVkRGLYANEAGqGTGAhPaAAAeVshPakQGlV qafsi DAGA_ALTHA : 246- 289: aggfl GasfayAFnrGVnRGLFSNEAGqGSAPiAhASAkAdePvsEGiV silep Y883_HAEIN : 256- 299: lggav GltvmkAIqsGVaRGIFSNESGlGSAPiAaAAAqTrePvrQGlI smtgt YAAJ_ECOLI : 253- 296: aggaa GytlsqAItnGFqRSMFSNEAGmGSTPnAaAAAaSwpPhpAAqG ivqmi YAAJ_HAEIN : 266- 309: aggmf GalvskAMmmGIkRGLFSNEAGmGSAPnSaAAAhVkhPvsQGlV qmlgv I 9: 87.7763 5( 5) A-[FIMV]-x(2)-G-[FIV]-x-R-[GS]-[ILM]-[FY]-[AS]-N-E-[AS]-G-x-G-[ST]-[AGT]-[AP]-x-[APS]-x-A-[AS]-A-x-[ASTV]-x(2)-P-x(2)-[AEQ]-[AG]-x-[GIV] Occurences: 5(5) ALCP_THEP3 : 210- 247: gilgs AVmwGVkRGLYANEAGqGTGAhPaAAAeVshPakQGlV qafsi DAGA_ALTHA : 252- 289: asfay AFnrGVnRGLFSNEAGqGSAPiAhASAkAdePvsEGiV silep Y883_HAEIN : 262- 299: ltvmk AIqsGVaRGIFSNESGlGSAPiAaAAAqTrePvrQGlI smtgt YAAJ_ECOLI : 259- 296: ytlsq AItnGFqRSMFSNEAGmGSTPnAaAAAaSwpPhpAAqG ivqmi YAAJ_HAEIN : 272- 309: alvsk AMmmGIkRGLFSNEAGmGSAPnSaAAAhVkhPvsQGlV qmlgv J 10: 87.6189 5( 5) L-x(2,4)-A-x(3,5)-G-[FIV]-x-R-[GS]-[ILM]-[FY]-[AS]-N-E-[AS]-G-x-G-[ST]-[AGT]-[AP]-x-[APS]-x-A-[AS]-A-x-[ASTV]-x(2)-P-x(2)-[AEQ]-[AG]-x-[GIV] Occurences: 5(5) ALCP_THEP3 : 207- 247: vfggi Lgs--Avmw--GVkRGLYANEAGqGTGAhPaAAAeVshPakQGlV qafsi DAGA_ALTHA : 245- 289: aaggf LgasfAyafnrGVnRGLFSNEAGqGSAPiAhASAkAdePvsEGiV silep Y883_HAEIN : 257- 299: ggavg LtvmkAiqs--GVaRGIFSNESGlGSAPiAaAAAqTrePvrQGlI smtgt YAAJ_ECOLI : 256- 296: aagyt Lsq--Aitn--GFqRSMFSNEAGmGSTPnAaAAAaSwpPhpAAqG ivqmi YAAJ_HAEIN : 268- 309: gmfga Lvsk-Ammm--GIkRGLFSNEAGmGSAPnSaAAAhVkhPvsQGlV qmlgv K 11: 86.1283 5( 5) A-x-[AG]-[IV]-[AQST]-x-G-G-[EP]-[AG]-A-[ILV]-F-W-M-W-[LMV]-x-[AT]-[FL]-[FIL]-G-x-[AST]-[ST]-x-[FY]-[AV]-E-[CSV] Occurences: 5(5) ALCP_THEP3 : 38- 67: nvagt AtGIAyGGPGAVFWMWViTFIGaATaYVES twrkf DAGA_ALTHA : 74- 103: niggv AlAISiGGPAALFWMWMtAFFGmTTkFVEV tlshk Y883_HAEIN : 83- 112: nivgv AtAVQaGGPGAIFWMWLvALLGmATkYAEC llavk YAAJ_ECOLI : 81- 110: nlagv AlAITaGGPGAVFWMWVaAFIGmATsFAEC slaql YAAJ_HAEIN : 94- 123: niggv AtAIAlGGEGAVFWMWVtAFIGmSSaFAES tlaql L 12: 79.6749 5( 5) G-x(1,3)-A-x(1,3)-G-G-[EP]-[AG]-A-[ILV]-F-W-M-W-[LMV]-x-[AT]-[FL]-[FIL]-G-x-[AST]-[ST]-x-[FY]-[AV]-E-[CSV] Occurences: 5(5) ALCP_THEP3 : 40- 67: agtat Gi--Ay--GGPGAVFWMWViTFIGaATaYVES twrkf DAGA_ALTHA : 72- 103: tgnig GvalAisiGGPAALFWMWMtAFFGmTTkFVEV tlshk Y883_HAEIN : 81- 112: tgniv GvatAvqaGGPGAIFWMWLvALLGmATkYAEC llavk YAAJ_ECOLI : 79- 110: sgnla GvalAitaGGPGAVFWMWVaAFIGmATsFAEC slaql YAAJ_HAEIN : 92- 123: vgnig GvatAialGGEGAVFWMWVtAFIGmSSaFAES tlaql M 13: 76.5049 6( 5) A-x(1,3)-G-G-[EP]-[AG]-A-[ILV]-F-W-M-W-[LMV]-x-[AT]-[FL]-[FIL]-G-x-[AST]-[ST]-x-[FY]-[AV]-E-[CSV] Occurences: 6(5) ALCP_THEP3 : 42- 67: tatgi Ay--GGPGAVFWMWViTFIGaATaYVES twrkf DAGA_ALTHA : 76- 103: ggval AisiGGPAALFWMWMtAFFGmTTkFVEV tlshk Y883_HAEIN : 85- 112: vgvat AvqaGGPGAIFWMWLvALLGmATkYAEC llavk YAAJ_ECOLI : 83- 110: agval AitaGGPGAVFWMWVaAFIGmATsFAEC slaql YAAJ_HAEIN : 96- 123: ggvat AialGGEGAVFWMWVtAFIGmSSaFAES tlaql YAAJ_HAEIN : 98- 123: vatai Al--GGEGAVFWMWVtAFIGmSSaFAES tlaql N 14: 73.8905 5( 5) G-x-G-[AS]-x-P-x(0,2)-A-x(0,1)-A-[AS]-A-x-[ASTV]-x(2)-P-[APV]-x-[EPQ]-[AG]-[AIL]-x-[GQS]-x(2)-[EGQS]-x(2)-[GILV]-x(2)-[FIM]-x(3)-[TV]-x-[CT]-[AGT]-[AILV]-x-[AIL]-[LMV] Occurences: 5(5) ALCP_THEP3 : 227- 268: neagq GtGAhP--A-AAAeVshPAkQGLvQafSiyLdvFlvvTaTALmIL ftgqy DAGA_ALTHA : 267- 310: fsnea GqGSaPi-AhASAkAdePVsEGIvSilEpfIdtIiicTlTGLvIL ssgvw Y883_HAEIN : 277- 320: fsnes GlGSaPiaA-AAAqTrePVrQGLiSmtGtfLdtIivcTmTGIvLV ltgaw Y883_HAEIN : 277- 320: fsnes GlGSaPi-AaAAAqTrePVrQGLiSmtGtfLdtIivcTmTGIvLV ltgaw YAAJ_ECOLI : 274- 316: fsnea GmGStPn-A-AAAaAswPPhPAAqGivQmiGifIdtlViCTAsAM lilla YAAJ_HAEIN : 287- 330: fsnea GmGSaPnsA-AAAhVkhPVsQGLvQmlGvfVdtMivcTcTAViIL lsnny O 15: 73.3348 5( 5) G-G-[EP]-[AG]-A-[ILV]-F-W-M-W-[LMV]-x-[AT]-[FL]-[FIL]-G-x-[AST]-[ST]-x-[FY]-[AV]-E-[CSV] Occurences: 5(5) ALCP_THEP3 : 44- 67: tgiay GGPGAVFWMWViTFIGaATaYVES twrkf DAGA_ALTHA : 80- 103: laisi GGPAALFWMWMtAFFGmTTkFVEV tlshk Y883_HAEIN : 89- 112: tavqa GGPGAIFWMWLvALLGmATkYAEC llavk YAAJ_ECOLI : 87- 110: laita GGPGAVFWMWVaAFIGmATsFAEC slaql YAAJ_HAEIN : 100- 123: taial GGEGAVFWMWVtAFIGmSSaFAES tlaql P 16: 69.7205 5( 5) G-[AS]-x-P-x(0,2)-A-x(0,1)-A-[AS]-A-x-[ASTV]-x(2)-P-[APV]-x-[EPQ]-[AG]-[AIL]-x-[GQS]-x(2)-[EGQS]-x(2)-[GILV]-x(2)-[FIM]-x(3)-[TV]-x-[CT]-[AGT]-[AILV]-x-[AIL]-[LMV] Occurences: 5(5) ALCP_THEP3 : 229- 268: agqgt GAhP--A-AAAeVshPAkQGLvQafSiyLdvFlvvTaTALmIL ftgqy DAGA_ALTHA : 269- 310: neagq GSaPi-AhASAkAdePVsEGIvSilEpfIdtIiicTlTGLvIL ssgvw Y883_HAEIN : 279- 320: nesgl GSaPiaA-AAAqTrePVrQGLiSmtGtfLdtIivcTmTGIvLV ltgaw Y883_HAEIN : 279- 320: nesgl GSaPi-AaAAAqTrePVrQGLiSmtGtfLdtIivcTmTGIvLV ltgaw YAAJ_ECOLI : 276- 316: neagm GStPn-A-AAAaAswPPhPAAqGivQmiGifIdtlViCTAsAM lilla YAAJ_HAEIN : 289- 330: neagm GSaPnsA-AAAhVkhPVsQGLvQmlGvfVdtMivcTcTAViIL lsnny Q 17: 69.1647 5( 5) G-[EP]-[AG]-A-[ILV]-F-W-M-W-[LMV]-x-[AT]-[FL]-[FIL]-G-x-[AST]-[ST]-x-[FY]-[AV]-E-[CSV] Occurences: 5(5) ALCP_THEP3 : 45- 67: giayg GPGAVFWMWViTFIGaATaYVES twrkf DAGA_ALTHA : 81- 103: aisig GPAALFWMWMtAFFGmTTkFVEV tlshk Y883_HAEIN : 90- 112: avqag GPGAIFWMWLvALLGmATkYAEC llavk YAAJ_ECOLI : 88- 110: aitag GPGAVFWMWVaAFIGmATsFAEC slaql YAAJ_HAEIN : 101- 123: aialg GEGAVFWMWVtAFIGmSSaFAES tlaql R 18: 61.8245 9( 5) G-x(0,2)-A-[ILV]-F-W-M-W-[LMV]-x-[AT]-[FL]-[FIL]-G-x-[AST]-[ST]-x-[FY]-[AV]-E-[CSV] Occurences: 9(5) ALCP_THEP3 : 45- 67: giayg GpgAVFWMWViTFIGaATaYVES twrkf ALCP_THEP3 : 47- 67: ayggp G--AVFWMWViTFIGaATaYVES twrkf DAGA_ALTHA : 81- 103: aisig GpaALFWMWMtAFFGmTTkFVEV tlshk Y883_HAEIN : 90- 112: avqag GpgAIFWMWLvALLGmATkYAEC llavk Y883_HAEIN : 92- 112: qaggp G--AIFWMWLvALLGmATkYAEC llavk YAAJ_ECOLI : 88- 110: aitag GpgAVFWMWVaAFIGmATsFAEC slaql YAAJ_ECOLI : 90- 110: taggp G--AVFWMWVaAFIGmATsFAEC slaql YAAJ_HAEIN : 101- 123: aialg GegAVFWMWVtAFIGmSSaFAES tlaql YAAJ_HAEIN : 103- 123: algge G--AVFWMWVtAFIGmSSaFAES tlaql S 19: 58.6544 5( 5) A-[ILV]-F-W-M-W-[LMV]-x-[AT]-[FL]-[FIL]-G-x-[AST]-[ST]-x-[FY]-[AV]-E-[CSV] Occurences: 5(5) ALCP_THEP3 : 48- 67: yggpg AVFWMWViTFIGaATaYVES twrkf DAGA_ALTHA : 84- 103: iggpa ALFWMWMtAFFGmTTkFVEV tlshk Y883_HAEIN : 93- 112: aggpg AIFWMWLvALLGmATkYAEC llavk YAAJ_ECOLI : 91- 110: aggpg AVFWMWVaAFIGmATsFAEC slaql YAAJ_HAEIN : 104- 123: lggeg AVFWMWVtAFIGmSSaFAES tlaql T 20: 51.3791 5( 5) L-[AS]-[AGS]-x-[IV]-G-[STV]-G-N-[ILV]-[AGV]-G-[TV]-A-x(1,3)-A-x(1,3)-G Occurences: 5(5) ALCP_THEP3 : 25- 44: altms LSGrIGVGNVAGTAtgiAy--G gpgav DAGA_ALTHA : 61- 80: alata LSGtVGTGNIGGVAl--AisiG gpaal Y883_HAEIN : 70- 89: alcta LAAtIGTGNIVGVAt--AvqaG gpgai YAAJ_ECOLI : 68- 87: slcts LAArVGSGNLAGVAl--AitaG gpgav YAAJ_HAEIN : 81- 100: afttg LASrVGVGNIGGVAtaiAl--G gegav YAAJ_HAEIN : 81- 100: afttg LASrVGVGNIGGVAt--AialG gegav Number of patterns evaluated by Pratt:25714 Total running time: 11 seconds