------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 13 sequences from file NAD_G3PDH PATTERN CONSERVATION: CM: min Nr of Seqs to Match 13 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename NAD_G3PDH.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: GPD1_YEAST 391 GPD2_YEAST 384 GPDA_BACSU 345 GPDA_CAEEL 351 GPDA_DROME 351 GPDA_DROVI 352 GPDA_ECOLI 339 GPDA_HAEIN 335 GPDA_HUMAN 13 GPDA_MOUSE 348 GPDA_RABIT 348 GPDA_SALTY 171 GPDA_SCHPO 384 Pratt run started at Thu Feb 6 20:21:53 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 12.0102 17( 13) G-x-G-x(0,1)-N 2: 12.0102 20( 13) V-x(3)-G-x(1,2)-G 3: 11.5102 18( 13) G-x(0,1)-S-x(0,1)-G 4: 11.5102 16( 13) I-x(1,2)-G-x(1,2)-G 5: 11.5102 18( 13) I-x(1,3)-G-x-G 6: 11.5102 16( 13) V-x(1,2)-I-x(1,2)-G 7: 11.5102 20( 13) K-x(2,3)-I-x(1,2)-G 8: 11.5102 27( 13) K-x(1,2)-V-x(3,4)-G 9: 11.5102 21( 13) K-x(1,3)-V-x(3)-G 10: 11.5102 18( 13) K-x(3,4)-I-x(0,1)-G 11: 11.5102 28( 13) A-x(3,4)-V-x(3,4)-G 12: 11.5102 23( 13) A-x(2,3)-V-x(3,4)-G 13: 11.5102 22( 13) A-x(1,3)-V-x(3)-G 14: 11.0102 30( 13) K-x(0,1)-V-x(3,5)-G 15: 11.0102 34( 13) K-x(0,2)-V-x(3,4)-G 16: 10.5102 35( 13) V-x(2,4)-G-x(0,2)-N 17: 10.5102 31( 13) I-x(0,2)-V-x(0,2)-G 18: 8.3401 33( 13) K-x-V 19: 8.3401 16( 13) S-x(4)-I 20: 8.3401 25( 13) A-x-K Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 23.8766 15( 13) A-x-K-x-[ILV]-x-[AI]-x-[AG]-[ACSV]-G B 2: 21.2148 15( 13) A-x-K-x(3)-[AI]-x-[AG]-[ACSV]-G C 3: 16.5965 14( 13) K-x-V-x(3)-[AG]-[ACGSV]-[AG] D 4: 16.3051 15( 13) K-x(3,4)-I-x(0,1)-G-[ASTV]-[GTV] E 5: 14.1605 14( 13) K-x(1,3)-V-x(3)-G-[ANS] F 6: 13.7655 17( 13) K-x(1,2)-V-x(3,4)-G-x-[ACGV] G 7: 13.7528 14( 13) K-x-V-x(4)-[ACSV]-[AG] H 8: 13.6605 19( 13) K-x(0,1)-V-x(3,5)-G-[ANS] I 9: 12.6651 27( 13) K-x(0,2)-V-x(3,4)-G-x-[ACGPTV] J 10: 12.4109 24( 13) I-x(0,2)-V-x(0,2)-G-x-[AGNST] K 11: 12.0102 17( 13) G-x-G-x(0,1)-N L 12: 12.0102 20( 13) V-x(3)-G-x(1,2)-G M 13: 11.5102 18( 13) G-x(0,1)-S-x(0,1)-G N 14: 11.5102 16( 13) I-x(1,2)-G-x(1,2)-G O 15: 11.5102 18( 13) I-x(1,3)-G-x-G P 16: 11.5102 16( 13) V-x(1,2)-I-x(1,2)-G Q 17: 11.5102 20( 13) K-x(2,3)-I-x(1,2)-G R 18: 11.5102 28( 13) A-x(3,4)-V-x(3,4)-G S 19: 11.5102 23( 13) A-x(2,3)-V-x(3,4)-G T 20: 11.5102 22( 13) A-x(1,3)-V-x(3)-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 23.8766 15( 13) A-x-K-x-[ILV]-x-[AI]-x-[AG]-[ACSV]-G Occurences: 15(13) GPD1_YEAST : 243- 253: isicg AlKnVvAlGCG fvegl GPD2_YEAST : 244- 254: isiag AlKnVvAlACG fvegm GPDA_BACSU : 190- 200: veigg AlKnIiAlAAG itdgl GPDA_CAEEL : 205- 215: velcg AlKnVvAcAAG ftdgl GPDA_DROME : 200- 210: vevcg AlKnIvAcGAG fvdgl GPDA_DROVI : 203- 213: vevcg AlKnIvAcGAG fvdgl GPDA_ECOLI : 193- 203: vqlgg AvKnViAiGAG msdgi GPDA_HAEIN : 193- 203: vqlgg AiKnViAiGAG isdgm GPDA_HUMAN : 1- 11: AsKkVcIvGSG nw GPDA_MOUSE : 1- 11: AgKkVcIvGSG nwgsa GPDA_MOUSE : 201- 211: veicg AlKnIvAvGAG fcdgl GPDA_RABIT : 1- 11: AgKkVcIvGSG dwgsa GPDA_RABIT : 201- 211: veicg AlKdLvAvGAG fcdgi GPDA_SALTY : 28- 38: vqlgg AvKnViAiGAG msdgi GPDA_SCHPO : 229- 239: valgg AlKnVvAmAVG fadgl B 2: 21.2148 15( 13) A-x-K-x(3)-[AI]-x-[AG]-[ACSV]-G Occurences: 15(13) GPD1_YEAST : 243- 253: isicg AlKnvvAlGCG fvegl GPD2_YEAST : 244- 254: isiag AlKnvvAlACG fvegm GPDA_BACSU : 190- 200: veigg AlKniiAlAAG itdgl GPDA_CAEEL : 205- 215: velcg AlKnvvAcAAG ftdgl GPDA_DROME : 200- 210: vevcg AlKnivAcGAG fvdgl GPDA_DROVI : 203- 213: vevcg AlKnivAcGAG fvdgl GPDA_ECOLI : 193- 203: vqlgg AvKnviAiGAG msdgi GPDA_HAEIN : 193- 203: vqlgg AiKnviAiGAG isdgm GPDA_HUMAN : 1- 11: AsKkvcIvGSG nw GPDA_MOUSE : 1- 11: AgKkvcIvGSG nwgsa GPDA_MOUSE : 201- 211: veicg AlKnivAvGAG fcdgl GPDA_RABIT : 1- 11: AgKkvcIvGSG dwgsa GPDA_RABIT : 201- 211: veicg AlKdlvAvGAG fcdgi GPDA_SALTY : 28- 38: vqlgg AvKnviAiGAG msdgi GPDA_SCHPO : 229- 239: valgg AlKnvvAmAVG fadgl C 3: 16.5965 14( 13) K-x-V-x(3)-[AG]-[ACGSV]-[AG] Occurences: 14(13) GPD1_YEAST : 245- 253: icgal KnVvalGCG fvegl GPD2_YEAST : 246- 254: iagal KnVvalACG fvegm GPDA_BACSU : 2- 10: m KkVtmlGAG swgta GPDA_CAEEL : 4- 12: msp KkVtiiGSG nwgsa GPDA_CAEEL : 207- 215: lcgal KnVvacAAG ftdgl GPDA_DROME : 21- 29: gsaia KiVganAAA lpefe GPDA_DROVI : 20- 28: gsaia KiVganAAA lpefe GPDA_ECOLI : 195- 203: lggav KnViaiGAG msdgi GPDA_HAEIN : 195- 203: lggai KnViaiGAG isdgm GPDA_HUMAN : 3- 11: as KkVcivGSG nw GPDA_MOUSE : 3- 11: ag KkVcivGSG nwgsa GPDA_RABIT : 3- 11: ag KkVcivGSG dwgsa GPDA_SALTY : 30- 38: lggav KnViaiGAG msdgi GPDA_SCHPO : 231- 239: lggal KnVvamAVG fadgl D 4: 16.3051 15( 13) K-x(3,4)-I-x(0,1)-G-[ASTV]-[GTV] Occurences: 15(13) GPD1_YEAST : 36- 43: aekpf Kvtv-I-GSG nwgtt GPD2_YEAST : 37- 44: krapf Kvtv-I-GSG nwgtt GPDA_BACSU : 54- 63: ylpnv KlstsIkGTT dmkea GPDA_CAEEL : 4- 12: msp KkvtiI-GSG nwgsa GPDA_CAEEL : 4- 12: msp Kkvt-IiGSG nwgsa GPDA_CAEEL : 5- 12: mspk Kvti-I-GSG nwgsa GPDA_DROME : 4- 13: mad KvnvcIvGSG nwgsa GPDA_DROVI : 3- 12: ae KvnvcIvGSG nngsa GPDA_ECOLI : 195- 203: lggav KnviaI-GAG msdgi GPDA_HAEIN : 195- 203: lggai KnviaI-GAG isdgm GPDA_HUMAN : 3- 11: as Kkvc-IvGSG nw GPDA_MOUSE : 3- 11: ag Kkvc-IvGSG nwgsa GPDA_RABIT : 3- 11: ag Kkvc-IvGSG dwgsa GPDA_SALTY : 30- 38: lggav KnviaI-GAG msdgi GPDA_SCHPO : 20- 28: dsirp KkrlsI-GVV gsgnw GPDA_SCHPO : 21- 28: sirpk Krls-I-GVV gsgnw E 5: 14.1605 14( 13) K-x(1,3)-V-x(3)-G-[ANS] Occurences: 14(13) GPD1_YEAST : 33- 42: lkaae KpfkVtviGS gnwgt GPD1_YEAST : 36- 44: aekpf Kvt-VigsGN wgtti GPD2_YEAST : 37- 45: krapf Kvt-VigsGN wgtti GPDA_BACSU : 2- 9: m Kk--VtmlGA gswgt GPDA_CAEEL : 4- 11: msp Kk--VtiiGS gnwgs GPDA_DROME : 4- 12: mad Kvn-VcivGS gnwgs GPDA_DROVI : 3- 11: ae Kvn-VcivGS gnngs GPDA_ECOLI : 195- 202: lggav Kn--ViaiGA gmsdg GPDA_HAEIN : 195- 202: lggai Kn--ViaiGA gisdg GPDA_HUMAN : 3- 10: as Kk--VcivGS gnw GPDA_MOUSE : 3- 10: ag Kk--VcivGS gnwgs GPDA_RABIT : 3- 10: ag Kk--VcivGS gdwgs GPDA_SALTY : 30- 37: lggav Kn--ViaiGA gmsdg GPDA_SCHPO : 144- 153: gisci KgvaVskeGS lysev F 6: 13.7655 17( 13) K-x(1,2)-V-x(3,4)-G-x-[ACGV] Occurences: 17(13) GPD1_YEAST : 245- 253: icgal Kn-Vval-GcG fvegl GPD1_YEAST : 245- 255: icgal KnvValgcGfV eglgw GPD2_YEAST : 246- 256: iagal KnvValacGfV egmgw GPDA_BACSU : 2- 10: m Kk-Vtml-GaG swgta GPDA_CAEEL : 4- 12: msp Kk-Vtii-GsG nwgsa GPDA_DROME : 4- 13: mad KvnVciv-GsG nwgsa GPDA_DROME : 202- 212: vcgal KniVacgaGfV dglkl GPDA_DROVI : 3- 12: ae KvnVciv-GsG nngsa GPDA_DROVI : 205- 215: vcgal KniVacgaGfV dglkl GPDA_ECOLI : 195- 203: lggav Kn-Viai-GaG msdgi GPDA_HAEIN : 195- 203: lggai Kn-Viai-GaG isdgm GPDA_HUMAN : 3- 11: as Kk-Vciv-GsG nw GPDA_MOUSE : 3- 11: ag Kk-Vciv-GsG nwgsa GPDA_MOUSE : 203- 213: icgal KniVavgaGfC dglgf GPDA_RABIT : 3- 11: ag Kk-Vciv-GsG dwgsa GPDA_RABIT : 203- 213: icgal KdlVavgaGfC dgigf GPDA_SALTY : 30- 38: lggav Kn-Viai-GaG msdgi GPDA_SCHPO : 231- 241: lggal KnvVamavGfA dglew G 7: 13.7528 14( 13) K-x-V-x(4)-[ACSV]-[AG] Occurences: 14(13) GPD1_YEAST : 245- 253: icgal KnVvalgCG fvegl GPD2_YEAST : 246- 254: iagal KnVvalaCG fvegm GPDA_BACSU : 2- 10: m KkVtmlgAG swgta GPDA_CAEEL : 4- 12: msp KkVtiigSG nwgsa GPDA_CAEEL : 207- 215: lcgal KnVvacaAG ftdgl GPDA_DROME : 21- 29: gsaia KiVganaAA lpefe GPDA_DROVI : 20- 28: gsaia KiVganaAA lpefe GPDA_ECOLI : 195- 203: lggav KnViaigAG msdgi GPDA_HAEIN : 195- 203: lggai KnViaigAG isdgm GPDA_HUMAN : 3- 11: as KkVcivgSG nw GPDA_MOUSE : 3- 11: ag KkVcivgSG nwgsa GPDA_RABIT : 3- 11: ag KkVcivgSG dwgsa GPDA_SALTY : 30- 38: lggav KnViaigAG msdgi GPDA_SCHPO : 231- 239: lggal KnVvamaVG fadgl H 8: 13.6605 19( 13) K-x(0,1)-V-x(3,5)-G-[ANS] Occurences: 19(13) GPD1_YEAST : 36- 42: aekpf K-Vtvi--GS gnwgt GPD1_YEAST : 36- 44: aekpf K-VtvigsGN wgtti GPD2_YEAST : 37- 43: krapf K-Vtvi--GS gnwgt GPD2_YEAST : 37- 45: krapf K-VtvigsGN wgtti GPDA_BACSU : 2- 9: m KkVtml--GA gswgt GPDA_BACSU : 2- 11: m KkVtmlgaGS wgtal GPDA_BACSU : 3- 9: mk K-Vtml--GA gswgt GPDA_BACSU : 3- 11: mk K-VtmlgaGS wgtal GPDA_CAEEL : 4- 11: msp KkVtii--GS gnwgs GPDA_CAEEL : 4- 13: msp KkVtiigsGN wgsai GPDA_CAEEL : 5- 11: mspk K-Vtii--GS gnwgs GPDA_CAEEL : 5- 13: mspk K-VtiigsGN wgsai GPDA_CAEEL : 240- 249: lmett KfVehyypGS nlqtf GPDA_DROME : 4- 12: mad K-VnvcivGS gnwgs GPDA_DROVI : 3- 11: ae K-VnvcivGS gnngs GPDA_ECOLI : 195- 202: lggav KnViai--GA gmsdg GPDA_HAEIN : 195- 202: lggai KnViai--GA gisdg GPDA_HUMAN : 3- 10: as KkVciv--GS gnw GPDA_HUMAN : 3- 12: as KkVcivgsGN w GPDA_HUMAN : 4- 10: ask K-Vciv--GS gnw GPDA_HUMAN : 4- 12: ask K-VcivgsGN w GPDA_MOUSE : 3- 10: ag KkVciv--GS gnwgs GPDA_MOUSE : 3- 12: ag KkVcivgsGN wgsai GPDA_MOUSE : 4- 10: agk K-Vciv--GS gnwgs GPDA_MOUSE : 4- 12: agk K-VcivgsGN wgsai GPDA_RABIT : 3- 10: ag KkVciv--GS gdwgs GPDA_RABIT : 4- 10: agk K-Vciv--GS gdwgs GPDA_SALTY : 30- 37: lggav KnViai--GA gmsdg GPDA_SCHPO : 144- 153: gisci KgVavskeGS lysev I 9: 12.6651 27( 13) K-x(0,2)-V-x(3,4)-G-x-[ACGPTV] Occurences: 27(13) GPD1_YEAST : 36- 43: aekpf K--Vtvi-GsG nwgtt GPD1_YEAST : 245- 253: icgal Kn-Vval-GcG fvegl GPD1_YEAST : 245- 255: icgal KnvValgcGfV eglgw GPD2_YEAST : 37- 44: krapf K--Vtvi-GsG nwgtt GPD2_YEAST : 246- 256: iagal KnvValacGfV egmgw GPDA_BACSU : 2- 10: m Kk-Vtml-GaG swgta GPDA_BACSU : 3- 10: mk K--Vtml-GaG swgta GPDA_CAEEL : 4- 12: msp Kk-Vtii-GsG nwgsa GPDA_CAEEL : 5- 12: mspk K--Vtii-GsG nwgsa GPDA_CAEEL : 207- 217: lcgal KnvVacaaGfT dglgy GPDA_DROME : 4- 13: mad KvnVciv-GsG nwgsa GPDA_DROME : 202- 212: vcgal KniVacgaGfV dglkl GPDA_DROVI : 3- 12: ae KvnVciv-GsG nngsa GPDA_DROVI : 205- 215: vcgal KniVacgaGfV dglkl GPDA_ECOLI : 195- 203: lggav Kn-Viai-GaG msdgi GPDA_HAEIN : 195- 203: lggai Kn-Viai-GaG isdgm GPDA_HUMAN : 3- 11: as Kk-Vciv-GsG nw GPDA_HUMAN : 4- 11: ask K--Vciv-GsG nw GPDA_MOUSE : 3- 11: ag Kk-Vciv-GsG nwgsa GPDA_MOUSE : 4- 11: agk K--Vciv-GsG nwgsa GPDA_MOUSE : 203- 213: icgal KniVavgaGfC dglgf GPDA_MOUSE : 326- 333: ftavy K--Vcye-GqP vgefi GPDA_RABIT : 3- 11: ag Kk-Vciv-GsG dwgsa GPDA_RABIT : 4- 11: agk K--Vciv-GsG dwgsa GPDA_RABIT : 203- 213: icgal KdlVavgaGfC dgigf GPDA_RABIT : 326- 333: fmavy K--Vcyq-GqP vgefi GPDA_SALTY : 30- 38: lggav Kn-Viai-GaG msdgi GPDA_SCHPO : 231- 241: lggal KnvVamavGfA dglew J 10: 12.4109 24( 13) I-x(0,2)-V-x(0,2)-G-x-[AGNST] Occurences: 24(13) GPD1_YEAST : 232- 239: fhvsv IedVa-GiS icgal GPD1_YEAST : 268- 274: nasaa IqrV--GlG eiirf GPD2_YEAST : 233- 240: fhvnv IddVa-GiS iagal GPDA_BACSU : 132- 139: dvrrd Iv-VlsGpS haeev GPDA_BACSU : 182- 190: ytnpd IigVeiGgA lknii GPDA_BACSU : 183- 190: tnpdi Ig-VeiGgA lknii GPDA_CAEEL : 21- 25: saiar I--V--GsT tksfp GPDA_DROME : 9- 13: kvnvc I--V--GsG nwgsa GPDA_DROME : 22- 26: saiak I--V--GaN aaalp GPDA_DROME : 204- 210: galkn I--VacGaG fvdgl GPDA_DROVI : 8- 12: kvnvc I--V--GsG nngsa GPDA_DROVI : 8- 14: kvnvc I--VgsGnN gsaia GPDA_DROVI : 21- 25: saiak I--V--GaN aaalp GPDA_DROVI : 207- 213: galkn I--VacGaG fvdgl GPDA_ECOLI : 186- 193: snpdf Ig-VqlGgA vknvi GPDA_HAEIN : 8- 14: tsqtp It-Vl-GaG sygta GPDA_HUMAN : 7- 11: skkvc I--V--GsG nw GPDA_MOUSE : 7- 11: gkkvc I--V--GsG nwgsa GPDA_MOUSE : 20- 24: saiak I--V--GsN agrla GPDA_MOUSE : 118- 126: igisl IkgVdeGpN glkli GPDA_MOUSE : 205- 211: galkn IvaV--GaG fcdgl GPDA_MOUSE : 205- 211: galkn I--VavGaG fcdgl GPDA_RABIT : 7- 11: gkkvc I--V--GsG dwgsa GPDA_RABIT : 20- 24: saiak I--V--GgN aaqla GPDA_RABIT : 20- 25: saiak I--Vg-GnA aqlaq GPDA_SALTY : 21- 28: inadf Ig-VqlGgA vknvi GPDA_SCHPO : 25- 31: kkrls IgvV--GsG nwgta GPDA_SCHPO : 25- 31: kkrls Ig-Vv-GsG nwgta K 11: 12.0102 17( 13) G-x-G-x(0,1)-N Occurences: 17(13) GPD1_YEAST : 41- 44: kvtvi GsG-N wgtti GPD1_YEAST : 259- 262: fvegl GwG-N nasaa GPD1_YEAST : 259- 263: fvegl GwGnN asaai GPD2_YEAST : 42- 45: kvtvi GsG-N wgtti GPD2_YEAST : 260- 263: fvegm GwG-N nasaa GPD2_YEAST : 260- 264: fvegm GwGnN asaai GPDA_BACSU : 206- 210: itdgl GyGdN akaal GPDA_CAEEL : 10- 13: kvtii GsG-N wgsai GPDA_CAEEL : 221- 225: ftdgl GyGdN tkaav GPDA_DROME : 11- 14: nvciv GsG-N wgsai GPDA_DROVI : 10- 13: nvciv GsG-N ngsai GPDA_DROVI : 10- 14: nvciv GsGnN gsaia GPDA_ECOLI : 209- 213: msdgi GfGaN artal GPDA_HAEIN : 209- 213: isdgm GfGaN artal GPDA_HUMAN : 9- 12: kvciv GsG-N w GPDA_MOUSE : 9- 12: kvciv GsG-N wgsai GPDA_MOUSE : 217- 221: fcdgl GfGdN tkaav GPDA_RABIT : 217- 221: fcdgi GfGdN tkaav GPDA_SALTY : 44- 48: msdgi GfGaN artal GPDA_SCHPO : 29- 32: sigvv GsG-N wgtai L 12: 12.0102 20( 13) V-x(3)-G-x(1,2)-G Occurences: 20(13) GPD1_YEAST : 37- 43: ekpfk VtviGs-G nwgtt GPD1_YEAST : 39- 46: pfkvt VigsGnwG ttiak GPD1_YEAST : 247- 253: galkn VvalGc-G fvegl GPD1_YEAST : 255- 261: lgcgf VeglGw-G nnasa GPD2_YEAST : 38- 44: rapfk VtviGs-G nwgtt GPD2_YEAST : 40- 47: pfkvt VigsGnwG ttiak GPD2_YEAST : 256- 262: lacgf VegmGw-G nnasa GPDA_BACSU : 4- 10: mkk VtmlGa-G swgta GPDA_CAEEL : 6- 12: mspkk VtiiGs-G nwgsa GPDA_DROME : 7- 13: adkvn VcivGs-G nwgsa GPDA_DROVI : 6- 12: aekvn VcivGs-G nngsa GPDA_ECOLI : 10- 17: nasmt VigaGsyG talai GPDA_ECOLI : 197- 203: gavkn ViaiGa-G msdgi GPDA_HAEIN : 10- 17: qtpit VlgaGsyG talai GPDA_HAEIN : 197- 203: gaikn ViaiGa-G isdgm GPDA_HUMAN : 5- 11: askk VcivGs-G nw GPDA_MOUSE : 5- 11: agkk VcivGs-G nwgsa GPDA_RABIT : 5- 11: agkk VcivGs-G dwgsa GPDA_SALTY : 32- 38: gavkn ViaiGa-G msdgi GPDA_SCHPO : 27- 34: rlsig VvgsGnwG taiak M 13: 11.5102 18( 13) G-x(0,1)-S-x(0,1)-G Occurences: 18(13) GPD1_YEAST : 41- 43: kvtvi G-S-G nwgtt GPD2_YEAST : 42- 44: kvtvi G-S-G nwgtt GPD2_YEAST : 158- 161: kgfel G-SkG vqlls GPDA_BACSU : 10- 13: tmlga G-SwG talal GPDA_CAEEL : 10- 12: kvtii G-S-G nwgsa GPDA_DROME : 11- 13: nvciv G-S-G nwgsa GPDA_DROVI : 10- 12: nvciv G-S-G nngsa GPDA_ECOLI : 14- 17: tviga G-SyG talai GPDA_ECOLI : 203- 207: iaiga GmSdG igfga GPDA_HAEIN : 14- 17: tvlga G-SyG talai GPDA_HAEIN : 203- 207: iaiga GiSdG mgfga GPDA_HAEIN : 230- 234: eitrl GiSlG antnt GPDA_HAEIN : 242- 245: tntfm GmS-G lgdlv GPDA_HUMAN : 9- 11: kvciv G-S-G nw GPDA_MOUSE : 9- 11: kvciv G-S-G nwgsa GPDA_RABIT : 9- 11: kvciv G-S-G dwgsa GPDA_SALTY : 38- 42: iaiga GmSdG igfga GPDA_SCHPO : 29- 31: sigvv G-S-G nwgta N 14: 11.5102 16( 13) I-x(1,2)-G-x(1,2)-G Occurences: 16(13) GPD1_YEAST : 40- 46: fkvtv IgsGnwG ttiak GPD2_YEAST : 41- 47: fkvtv IgsGnwG ttiak GPDA_BACSU : 201- 206: alaag ItdGl-G ygdna GPDA_CAEEL : 8- 12: pkkvt Ii-Gs-G nwgsa GPDA_CAEEL : 9- 15: kkvti IgsGnwG saiar GPDA_DROME : 9- 13: kvnvc Iv-Gs-G nwgsa GPDA_DROVI : 8- 12: kvnvc Iv-Gs-G nngsa GPDA_ECOLI : 11- 17: asmtv IgaGsyG talai GPDA_ECOLI : 198- 203: avknv IaiGa-G msdgi GPDA_HAEIN : 198- 203: aiknv IaiGa-G isdgm GPDA_HAEIN : 204- 209: aigag IsdGm-G fgana GPDA_HUMAN : 7- 11: skkvc Iv-Gs-G nw GPDA_MOUSE : 7- 11: gkkvc Iv-Gs-G nwgsa GPDA_RABIT : 7- 11: gkkvc Iv-Gs-G dwgsa GPDA_SALTY : 33- 38: avknv IaiGa-G msdgi GPDA_SCHPO : 133- 139: qmvgl IrpGavG iscik O 15: 11.5102 18( 13) I-x(1,3)-G-x-G Occurences: 18(13) GPD1_YEAST : 268- 274: nasaa IqrvGlG eiirf GPD2_YEAST : 269- 275: nasaa IqrlGlG eiikf GPDA_BACSU : 201- 206: alaag Itd-GlG ygdna GPDA_CAEEL : 8- 12: pkkvt Ii--GsG nwgsa GPDA_DROME : 9- 13: kvnvc Iv--GsG nwgsa GPDA_DROME : 204- 210: galkn IvacGaG fvdgl GPDA_DROVI : 8- 12: kvnvc Iv--GsG nngsa GPDA_DROVI : 207- 213: galkn IvacGaG fvdgl GPDA_ECOLI : 198- 203: avknv Iai-GaG msdgi GPDA_HAEIN : 8- 14: tsqtp ItvlGaG sygta GPDA_HAEIN : 198- 203: aiknv Iai-GaG isdgm GPDA_HAEIN : 204- 209: aigag Isd-GmG fgana GPDA_HUMAN : 7- 11: skkvc Iv--GsG nw GPDA_MOUSE : 7- 11: gkkvc Iv--GsG nwgsa GPDA_MOUSE : 205- 211: galkn IvavGaG fcdgl GPDA_RABIT : 7- 11: gkkvc Iv--GsG dwgsa GPDA_SALTY : 33- 38: avknv Iai-GaG msdgi GPDA_SCHPO : 25- 31: kkrls IgvvGsG nwgta P 16: 11.5102 16( 13) V-x(1,2)-I-x(1,2)-G Occurences: 16(13) GPD1_YEAST : 37- 43: ekpfk VtvIgsG nwgtt GPD2_YEAST : 38- 44: rapfk VtvIgsG nwgtt GPDA_BACSU : 185- 189: pdiig Ve-Ig-G alkni GPDA_CAEEL : 6- 10: mspkk Vt-Ii-G sgnwg GPDA_CAEEL : 6- 12: mspkk VtiIgsG nwgsa GPDA_CAEEL : 327- 333: plfta VhkIcaG emkpa GPDA_DROME : 7- 11: adkvn Vc-Iv-G sgnwg GPDA_DROVI : 6- 10: aekvn Vc-Iv-G sgnng GPDA_ECOLI : 197- 203: gavkn ViaIgaG msdgi GPDA_HAEIN : 197- 203: gaikn ViaIgaG isdgm GPDA_HUMAN : 5- 9: askk Vc-Iv-G sgnw GPDA_MOUSE : 5- 9: agkk Vc-Iv-G sgnwg GPDA_MOUSE : 196- 200: qevdt Ve-Ic-G alkni GPDA_RABIT : 5- 9: agkk Vc-Iv-G sgdwg GPDA_RABIT : 196- 200: qevnt Ve-Ic-G alkdl GPDA_SALTY : 32- 38: gavkn ViaIgaG msdgi GPDA_SCHPO : 130- 136: vwhqm VglIrpG avgis Q 17: 11.5102 20( 13) K-x(2,3)-I-x(1,2)-G Occurences: 20(13) GPD1_YEAST : 36- 43: aekpf KvtvIgsG nwgtt GPD2_YEAST : 37- 44: krapf KvtvIgsG nwgtt GPDA_BACSU : 212- 219: ygdna KaalItrG laeia GPDA_CAEEL : 4- 10: msp KkvtIi-G sgnwg GPDA_CAEEL : 5- 10: mspk Kvt-Ii-G sgnwg GPDA_CAEEL : 5- 12: mspk KvtiIgsG nwgsa GPDA_CAEEL : 227- 234: ygdnt KaavIrlG lmett GPDA_DROME : 222- 229: lgdnt KaavIrlG lmemi GPDA_DROVI : 225- 232: lgdnt KaavIrlG lmemi GPDA_ECOLI : 195- 201: lggav Knv-IaiG agmsd GPDA_HAEIN : 195- 201: lggai Knv-IaiG agisd GPDA_HUMAN : 3- 9: as KkvcIv-G sgnw GPDA_HUMAN : 4- 9: ask Kvc-Iv-G sgnw GPDA_MOUSE : 3- 9: ag KkvcIv-G sgnwg GPDA_MOUSE : 4- 9: agk Kvc-Iv-G sgnwg GPDA_MOUSE : 223- 230: fgdnt KaavIrlG lmemi GPDA_RABIT : 3- 9: ag KkvcIv-G sgdwg GPDA_RABIT : 4- 9: agk Kvc-Iv-G sgdwg GPDA_RABIT : 223- 230: fgdnt KaavIrlG lmemi GPDA_SALTY : 30- 36: lggav Knv-IaiG agmsd GPDA_SCHPO : 162- 168: evise Klg-IycG vlsga R 18: 11.5102 28( 13) A-x(3,4)-V-x(3,4)-G Occurences: 28(13) GPD1_YEAST : 243- 251: isicg Alkn-Vval-G cgfve GPD1_YEAST : 243- 253: isicg AlknvValgcG fvegl GPD2_YEAST : 34- 42: vhlkr Apfk-Vtvi-G sgnwg GPD2_YEAST : 244- 254: isiag AlknvValacG fvegm GPD2_YEAST : 252- 260: nvval Acgf-Vegm-G wgnna GPDA_BACSU : 15- 24: gswgt Alal-VltdnG nevcv GPDA_BACSU : 306- 314: mpite Alhq-Vlfn-G qkvet GPDA_CAEEL : 76- 86: pnnvv AvtdlVesceG snvlv GPDA_CAEEL : 205- 215: velcg AlknvVacaaG ftdgl GPDA_DROME : 2- 11: m AdkvnVciv-G sgnwg GPDA_DROME : 200- 210: vevcg AlkniVacgaG fvdgl GPDA_DROVI : 1- 10: AekvnVciv-G sgnng GPDA_DROVI : 203- 213: vevcg AlkniVacgaG fvdgl GPDA_ECOLI : 6- 14: mnqrn Asmt-Viga-G sygta GPDA_ECOLI : 193- 201: vqlgg Avkn-Viai-G agmsd GPDA_HAEIN : 193- 201: vqlgg Aikn-Viai-G agisd GPDA_HUMAN : 1- 9: Askk-Vciv-G sgnw GPDA_MOUSE : 1- 9: Agkk-Vciv-G sgnwg GPDA_MOUSE : 16- 26: gnwgs AiakiVgsnaG rlahf GPDA_MOUSE : 74- 84: ppnvv AipdvVqaatG adilv GPDA_MOUSE : 201- 211: veicg AlkniVavgaG fcdgl GPDA_MOUSE : 323- 331: fplft Avyk-Vcye-G qpvge GPDA_RABIT : 1- 9: Agkk-Vciv-G sgdwg GPDA_RABIT : 201- 211: veicg AlkdlVavgaG fcdgi GPDA_RABIT : 323- 331: fplfm Avyk-Vcyq-G qpvge GPDA_SALTY : 18- 27: rvyin AdfigVqlg-G avknv GPDA_SALTY : 28- 36: vqlgg Avkn-Viai-G agmsd GPDA_SCHPO : 81- 90: evfne Ahen-VkylpG iecpp GPDA_SCHPO : 229- 239: valgg AlknvVamavG fadgl S 19: 11.5102 23( 13) A-x(2,3)-V-x(3,4)-G Occurences: 23(13) GPD1_YEAST : 243- 251: isicg AlknVval-G cgfve GPD2_YEAST : 34- 42: vhlkr ApfkVtvi-G sgnwg GPD2_YEAST : 252- 260: nvval AcgfVegm-G wgnna GPDA_BACSU : 15- 24: gswgt AlalVltdnG nevcv GPDA_BACSU : 99- 107: fitkk Avf-VhvskG iepds GPDA_BACSU : 306- 314: mpite AlhqVlfn-G qkvet GPDA_CAEEL : 197- 204: nvved Aht-Velc-G alknv GPDA_DROME : 192- 199: vvvdd Ada-Vevc-G alkni GPDA_DROVI : 195- 202: vvved Ada-Vevc-G alkni GPDA_ECOLI : 6- 14: mnqrn AsmtViga-G sygta GPDA_ECOLI : 103- 111: lmrpd Arl-VwatkG leaet GPDA_ECOLI : 193- 201: vqlgg AvknViai-G agmsd GPDA_HAEIN : 193- 201: vqlgg AiknViai-G agisd GPDA_HUMAN : 1- 9: AskkVciv-G sgnw GPDA_MOUSE : 1- 9: AgkkVciv-G sgnwg GPDA_MOUSE : 18- 26: wgsai Aki-VgsnaG rlahf GPDA_MOUSE : 323- 331: fplft AvykVcye-G qpvge GPDA_RABIT : 1- 9: AgkkVciv-G sgdwg GPDA_RABIT : 323- 331: fplfm AvykVcyq-G qpvge GPDA_SALTY : 28- 36: vqlgg AvknViai-G agmsd GPDA_SCHPO : 81- 90: evfne AhenVkylpG iecpp GPDA_SCHPO : 235- 243: lknvv Ama-VgfadG lewgg GPDA_SCHPO : 285- 293: qscgi Adl-VtsclG grnnr T 20: 11.5102 22( 13) A-x(1,3)-V-x(3)-G Occurences: 22(13) GPD1_YEAST : 243- 251: isicg AlknVvalG cgfve GPD2_YEAST : 34- 42: vhlkr ApfkVtviG sgnwg GPD2_YEAST : 252- 260: nvval AcgfVegmG wgnna GPDA_BACSU : 306- 314: mpite AlhqVlfnG qkvet GPDA_CAEEL : 197- 204: nvved Aht-VelcG alknv GPDA_CAEEL : 228- 234: gdntk Aa--VirlG lmett GPDA_DROME : 192- 199: vvvdd Ada-VevcG alkni GPDA_DROME : 223- 229: gdntk Aa--VirlG lmemi GPDA_DROVI : 195- 202: vvved Ada-VevcG alkni GPDA_DROVI : 226- 232: gdntk Aa--VirlG lmemi GPDA_ECOLI : 6- 14: mnqrn AsmtVigaG sygta GPDA_ECOLI : 193- 201: vqlgg AvknViaiG agmsd GPDA_HAEIN : 193- 201: vqlgg AiknViaiG agisd GPDA_HUMAN : 1- 9: AskkVcivG sgnw GPDA_MOUSE : 1- 9: AgkkVcivG sgnwg GPDA_MOUSE : 224- 230: gdntk Aa--VirlG lmemi GPDA_MOUSE : 323- 331: fplft AvykVcyeG qpvge GPDA_RABIT : 1- 9: AgkkVcivG sgdwg GPDA_RABIT : 224- 230: gdntk Aa--VirlG lmemi GPDA_RABIT : 323- 331: fplfm AvykVcyqG qpvge GPDA_SALTY : 28- 36: vqlgg AvknViaiG agmsd GPDA_SCHPO : 222- 228: svddv Ag--ValgG alknv Number of patterns evaluated by Pratt:103 Total running time: 0 seconds