------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 5 sequences from file MYELIN_P0 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 5 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename MYELIN_P0.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: MYP0_BOVIN 219 MYP0_HETFR 246 MYP0_HUMAN 248 MYP0_MOUSE 248 MYP0_RAT 248 Pratt run started at Thu Feb 6 20:21:31 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 149.1218 5( 5) V-G-D-x(2,3)-K-x(0,1)-D-G-S-I-V-I-x-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-x-V-G-x(2)-S-x-V-x-L-x-V-x(2)-K-x-P 2: 149.1218 5( 5) W-V-G-D-x(2,3)-K-x(0,1)-D-G-S-I-V-I-x-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-x-V-G-x(2)-S-x-V-x-L-x-V-x(2)-K 3: 149.1218 5( 5) R-x(2)-W-V-G-D-x(2,3)-K-x(0,1)-D-G-S-I-V-I-x-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-x-V-G-x(2)-S-x-V-x-L-x-V 4: 149.1218 5( 5) F-x(2)-R-x(2)-W-V-G-D-x(2,3)-K-x(0,1)-D-G-S-I-V-I-x-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-x-V-G-x(2)-S-x-V-x-L 5: 149.1218 5( 5) G-x-F-x(2)-R-x(2)-W-V-G-D-x(2,3)-K-x(0,1)-D-G-S-I-V-I-x-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-x-V-G-x(2)-S-x-V 6: 149.1218 5( 5) P-Y-I-x(0,1)-E-x(1,2)-G-x-F-x(2)-R-x(2)-W-V-G-D-x(4)-D-G-S-I-V-I-x-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-x-V 7: 149.1218 5( 5) G-x-P-Y-I-x(0,1)-E-x(1,2)-G-x-F-x(2)-R-x(2)-W-V-G-D-x(4)-D-G-S-I-V-I-x-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D 8: 144.9518 5( 5) G-D-x(2,3)-K-x(0,1)-D-G-S-I-V-I-x-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-x-V-G-x(2)-S-x-V-x-L-x-V-x(2)-K-x-P 9: 144.9518 5( 5) I-x(0,1)-E-x(1,2)-G-x-F-x(2)-R-x(2)-W-V-G-D-x(4)-D-G-S-I-V-I-x-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-x-V-G 10: 144.9518 5( 5) I-x(3)-G-x-F-x(2)-R-x(2)-W-V-G-D-x(2,3)-K-x(0,1)-D-G-S-I-V-I-x-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-x-V-G 11: 144.9518 5( 5) Y-x(1,2)-E-x(1,2)-G-x-F-x(2)-R-x(2)-W-V-G-D-x(4)-D-G-S-I-V-I-x-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-x-V-G 12: 144.9518 5( 5) Y-x(4)-G-x-F-x(2)-R-x(2)-W-V-G-D-x(2,3)-K-x(0,1)-D-G-S-I-V-I-x-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-x-V-G 13: 140.7817 5( 5) D-G-S-I-V-I-x-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-x-V-G-x(0,1)-T-S-x(1,2)-V-x-L-x-V-x(2)-K-x-P-x(5)-V 14: 140.7817 5( 5) D-x(2,3)-K-x(0,1)-D-G-S-I-V-I-x-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-x-V-G-x(2)-S-x-V-x-L-x-V-x(2)-K-x-P 15: 140.7817 5( 5) D-x(4)-D-G-S-I-V-I-x-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-x-V-G-x(0,1)-T-S-x(1,2)-V-x-L-x-V-x(2)-K-x-P 16: 140.7817 5( 5) Y-x(2)-G-x-P-Y-I-x(0,1)-E-x(1,2)-G-x-F-x(2)-R-x(2)-W-V-G-D-x(4)-D-G-S-I-V-I-x-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N 17: 140.7817 5( 5) H-Y-x(2)-G-x-P-Y-I-x(0,1)-E-x(1,2)-G-x-F-x(2)-R-x(2)-W-V-G-D-x(4)-D-G-S-I-V-I-x-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K 18: 140.7817 5( 5) F-H-Y-x(2)-G-x-P-Y-I-x(0,1)-E-x(1,2)-G-x-F-x(2)-R-x(2)-W-V-G-D-x(4)-D-G-S-I-V-I-x-N-L-D-Y-x-D-N-G-T-F-T-C-D-V 19: 140.7817 5( 5) I-F-H-Y-x(2)-G-x-P-Y-I-x(0,1)-E-x(1,2)-G-x-F-x(2)-R-x(2)-W-V-G-D-x(4)-D-G-S-I-V-I-x-N-L-D-Y-x-D-N-G-T-F-T-C-D 20: 140.7817 5( 5) S-I-F-H-Y-x(2)-G-x-P-Y-I-x(0,1)-E-x(1,2)-G-x-F-x(2)-R-x(2)-W-V-G-D-x(4)-D-G-S-I-V-I-x-N-L-D-Y-x-D-N-G-T-F-T-C Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 177.5531 5( 5) P-Y-I-x(0,1)-E-x(1,2)-G-[AQT]-F-[KR]-[EG]-R-[IV]-[EQ]-W-V-G-D-[IP]-x(2)-[HK]-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-[IV]-V B 2: 177.4516 5( 5) Y-I-[DE]-[EK]-x-G-[AQT]-F-[KR]-[EG]-R-[IV]-[EQ]-W-V-G-D-x(2,3)-K-x(0,1)-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-[IV]-V-G C 3: 177.4226 5( 5) G-[AQT]-F-[KR]-[EG]-R-[IV]-[EQ]-W-V-G-D-x(2,3)-K-x(0,1)-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-[IV]-V-G-x-[ST]-S-[DQ]-V D 4: 174.7601 5( 5) F-[KR]-[EG]-R-[IV]-[EQ]-W-V-G-D-x(2,3)-K-x(0,1)-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-[IV]-V-G-x-[ST]-S-[DQ]-V-x-L E 5: 174.3282 5( 5) G-x-P-Y-I-x(0,1)-E-x(1,2)-G-[AQT]-F-[KR]-[EG]-R-[IV]-[EQ]-W-V-G-D-[IP]-x(2)-[HK]-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D F 6: 173.3831 5( 5) I-x(0,1)-E-x(1,2)-G-[AQT]-F-[KR]-[EG]-R-[IV]-[EQ]-W-V-G-D-[IP]-x(2)-[HK]-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-[IV]-V-G G 7: 173.3831 5( 5) Y-x(1,2)-E-x(1,2)-G-[AQT]-F-[KR]-[EG]-R-[IV]-[EQ]-W-V-G-D-[IP]-x(2)-[HK]-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-[IV]-V-G H 8: 173.2816 5( 5) I-[DE]-[EK]-x-G-[AQT]-F-[KR]-[EG]-R-[IV]-[EQ]-W-V-G-D-x(2,3)-K-x(0,1)-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-[IV]-V-G I 9: 171.4564 5( 5) V-G-D-x(2,3)-K-x(0,1)-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-[IV]-V-G-x-[ST]-S-[DQ]-V-x-L-x-V-[FY]-[DE]-K-[IV]-P J 10: 169.1583 5( 5) Y-[AG]-x-G-x-P-Y-I-x(0,1)-E-x(1,2)-G-[AQT]-F-[KR]-[EG]-R-[IV]-[EQ]-W-V-G-D-[IP]-x(2)-[HK]-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N K 11: 169.1583 5( 5) H-Y-[AG]-x-G-x-P-Y-I-x(0,1)-E-x(1,2)-G-[AQT]-F-[KR]-[EG]-R-[IV]-[EQ]-W-V-G-D-[IP]-x(2)-[HK]-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K L 12: 169.1583 5( 5) F-H-Y-[AG]-x-G-x-P-Y-I-x(0,1)-E-x(1,2)-G-[AQT]-F-[KR]-[EG]-R-[IV]-[EQ]-W-V-G-D-[IP]-x(2)-[HK]-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D-V M 13: 169.1583 5( 5) I-F-H-Y-[AG]-x-G-x-P-Y-I-x(0,1)-E-x(1,2)-G-[AQT]-F-[KR]-[EG]-R-[IV]-[EQ]-W-V-G-D-[IP]-x(2)-[HK]-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D N 14: 169.1583 5( 5) S-I-F-H-Y-[AG]-x-G-x-P-Y-I-x(0,1)-E-x(1,2)-G-[AQT]-F-[KR]-[EG]-R-[IV]-[EQ]-W-V-G-D-[IP]-x(2)-[HK]-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C O 15: 168.2833 5( 5) R-[IV]-[EQ]-W-V-G-D-x(2,3)-K-x(0,1)-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-[IV]-V-G-x-[ST]-S-[DQ]-V-x-L-x-V P 16: 168.2316 5( 5) W-V-G-D-x(2,3)-K-x(0,1)-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-[IV]-V-G-x-[ST]-S-[DQ]-V-x-L-x-V-[FY]-[DE]-K Q 17: 167.2864 5( 5) G-D-x(2,3)-K-x(0,1)-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-[IV]-V-G-x-[ST]-S-[DQ]-V-x-L-x-V-[FY]-[DE]-K-[IV]-P R 18: 166.4207 5( 5) D-[IP]-x(2)-[HK]-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-[IV]-V-G-x(0,1)-T-S-x(1,2)-V-x-L-x-V-[FY]-[DE]-K-[IV]-P-[PT] S 19: 166.2950 5( 5) D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-[IV]-V-G-x(0,1)-T-S-x(1,2)-V-x-L-x-V-[FY]-[DE]-K-[IV]-P-[PT]-x(2)-[AG]-[GV]-V T 20: 166.2901 5( 5) D-x(2,3)-K-x(0,1)-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-[IV]-V-G-x-[ST]-S-[DQ]-V-x-L-x-V-[FY]-[DE]-K-[IV]-P-[PT] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 177.5531 5( 5) P-Y-I-x(0,1)-E-x(1,2)-G-[AQT]-F-[KR]-[EG]-R-[IV]-[EQ]-W-V-G-D-[IP]-x(2)-[HK]-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-[IV]-V Occurences: 5(5) MYP0_BOVIN : 58- 107: yakgq PYIdEv-GTFKERIQWVGDPhrKDGSIVIHNLDYgDNGTFTCDVKNPPDIV gktsq MYP0_HETFR : 85- 134: ygngv PYI-EkwGQFRGRVEWVGDIskHDGSIVIRNLDYiDNGTFTCDVKNPPDVV gtssd MYP0_HUMAN : 87- 136: yakgq PYIdEv-GTFKERIQWVGDPrwKDGSIVIHNLDYsDNGTFTCDVKNPPDIV gktsq MYP0_MOUSE : 87- 136: yakgq PYIdEv-GAFKERIQWVGDPrwKDGSIVIHNLDYsDNGTFTCDVKNPPDIV gktsq MYP0_RAT : 87- 136: yakgq PYIdEv-GTFKERIQWVGDPswKDGSIVIHNLDYsDNGTFTCDVKNPPDIV gktsq B 2: 177.4516 5( 5) Y-I-[DE]-[EK]-x-G-[AQT]-F-[KR]-[EG]-R-[IV]-[EQ]-W-V-G-D-x(2,3)-K-x(0,1)-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-[IV]-V-G Occurences: 5(5) MYP0_BOVIN : 59- 108: akgqp YIDEvGTFKERIQWVGDphrK-DGSIVIHNLDYgDNGTFTCDVKNPPDIVG ktsqv MYP0_HETFR : 86- 135: gngvp YIEKwGQFRGRVEWVGDis-KhDGSIVIRNLDYiDNGTFTCDVKNPPDVVG tssdv MYP0_HUMAN : 88- 137: akgqp YIDEvGTFKERIQWVGDprwK-DGSIVIHNLDYsDNGTFTCDVKNPPDIVG ktsqv MYP0_MOUSE : 88- 137: akgqp YIDEvGAFKERIQWVGDprwK-DGSIVIHNLDYsDNGTFTCDVKNPPDIVG ktsqv MYP0_RAT : 88- 137: akgqp YIDEvGTFKERIQWVGDpswK-DGSIVIHNLDYsDNGTFTCDVKNPPDIVG ktsqv C 3: 177.4226 5( 5) G-[AQT]-F-[KR]-[EG]-R-[IV]-[EQ]-W-V-G-D-x(2,3)-K-x(0,1)-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-[IV]-V-G-x-[ST]-S-[DQ]-V Occurences: 5(5) MYP0_BOVIN : 64- 113: yidev GTFKERIQWVGDphrK-DGSIVIHNLDYgDNGTFTCDVKNPPDIVGkTSQV tlyvf MYP0_HETFR : 91- 140: yiekw GQFRGRVEWVGDis-KhDGSIVIRNLDYiDNGTFTCDVKNPPDVVGtSSDV hltvy MYP0_HUMAN : 93- 142: yidev GTFKERIQWVGDprwK-DGSIVIHNLDYsDNGTFTCDVKNPPDIVGkTSQV tlyvf MYP0_MOUSE : 93- 142: yidev GAFKERIQWVGDprwK-DGSIVIHNLDYsDNGTFTCDVKNPPDIVGkTSQV tlyvf MYP0_RAT : 93- 142: yidev GTFKERIQWVGDpswK-DGSIVIHNLDYsDNGTFTCDVKNPPDIVGkTSQV tlyvf D 4: 174.7601 5( 5) F-[KR]-[EG]-R-[IV]-[EQ]-W-V-G-D-x(2,3)-K-x(0,1)-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-[IV]-V-G-x-[ST]-S-[DQ]-V-x-L Occurences: 5(5) MYP0_BOVIN : 66- 115: devgt FKERIQWVGDphrK-DGSIVIHNLDYgDNGTFTCDVKNPPDIVGkTSQVtL yvfek MYP0_HETFR : 93- 142: ekwgq FRGRVEWVGDis-KhDGSIVIRNLDYiDNGTFTCDVKNPPDVVGtSSDVhL tvydk MYP0_HUMAN : 95- 144: devgt FKERIQWVGDprwK-DGSIVIHNLDYsDNGTFTCDVKNPPDIVGkTSQVtL yvfek MYP0_MOUSE : 95- 144: devga FKERIQWVGDprwK-DGSIVIHNLDYsDNGTFTCDVKNPPDIVGkTSQVtL yvfek MYP0_RAT : 95- 144: devgt FKERIQWVGDpswK-DGSIVIHNLDYsDNGTFTCDVKNPPDIVGkTSQVtL yvfek E 5: 174.3282 5( 5) G-x-P-Y-I-x(0,1)-E-x(1,2)-G-[AQT]-F-[KR]-[EG]-R-[IV]-[EQ]-W-V-G-D-[IP]-x(2)-[HK]-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D Occurences: 5(5) MYP0_BOVIN : 56- 105: fhyak GqPYIdEv-GTFKERIQWVGDPhrKDGSIVIHNLDYgDNGTFTCDVKNPPD ivgkt MYP0_HETFR : 83- 132: fhygn GvPYI-EkwGQFRGRVEWVGDIskHDGSIVIRNLDYiDNGTFTCDVKNPPD vvgts MYP0_HUMAN : 85- 134: fhyak GqPYIdEv-GTFKERIQWVGDPrwKDGSIVIHNLDYsDNGTFTCDVKNPPD ivgkt MYP0_MOUSE : 85- 134: fhyak GqPYIdEv-GAFKERIQWVGDPrwKDGSIVIHNLDYsDNGTFTCDVKNPPD ivgkt MYP0_RAT : 85- 134: fhyak GqPYIdEv-GTFKERIQWVGDPswKDGSIVIHNLDYsDNGTFTCDVKNPPD ivgkt F 6: 173.3831 5( 5) I-x(0,1)-E-x(1,2)-G-[AQT]-F-[KR]-[EG]-R-[IV]-[EQ]-W-V-G-D-[IP]-x(2)-[HK]-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-[IV]-V-G Occurences: 5(5) MYP0_BOVIN : 60- 108: kgqpy IdEv-GTFKERIQWVGDPhrKDGSIVIHNLDYgDNGTFTCDVKNPPDIVG ktsqv MYP0_HETFR : 87- 135: ngvpy I-EkwGQFRGRVEWVGDIskHDGSIVIRNLDYiDNGTFTCDVKNPPDVVG tssdv MYP0_HUMAN : 89- 137: kgqpy IdEv-GTFKERIQWVGDPrwKDGSIVIHNLDYsDNGTFTCDVKNPPDIVG ktsqv MYP0_MOUSE : 89- 137: kgqpy IdEv-GAFKERIQWVGDPrwKDGSIVIHNLDYsDNGTFTCDVKNPPDIVG ktsqv MYP0_RAT : 89- 137: kgqpy IdEv-GTFKERIQWVGDPswKDGSIVIHNLDYsDNGTFTCDVKNPPDIVG ktsqv G 7: 173.3831 5( 5) Y-x(1,2)-E-x(1,2)-G-[AQT]-F-[KR]-[EG]-R-[IV]-[EQ]-W-V-G-D-[IP]-x(2)-[HK]-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-[IV]-V-G Occurences: 5(5) MYP0_BOVIN : 59- 108: akgqp YidEv-GTFKERIQWVGDPhrKDGSIVIHNLDYgDNGTFTCDVKNPPDIVG ktsqv MYP0_HETFR : 86- 135: gngvp Yi-EkwGQFRGRVEWVGDIskHDGSIVIRNLDYiDNGTFTCDVKNPPDVVG tssdv MYP0_HUMAN : 88- 137: akgqp YidEv-GTFKERIQWVGDPrwKDGSIVIHNLDYsDNGTFTCDVKNPPDIVG ktsqv MYP0_MOUSE : 88- 137: akgqp YidEv-GAFKERIQWVGDPrwKDGSIVIHNLDYsDNGTFTCDVKNPPDIVG ktsqv MYP0_RAT : 88- 137: akgqp YidEv-GTFKERIQWVGDPswKDGSIVIHNLDYsDNGTFTCDVKNPPDIVG ktsqv H 8: 173.2816 5( 5) I-[DE]-[EK]-x-G-[AQT]-F-[KR]-[EG]-R-[IV]-[EQ]-W-V-G-D-x(2,3)-K-x(0,1)-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-[IV]-V-G Occurences: 5(5) MYP0_BOVIN : 60- 108: kgqpy IDEvGTFKERIQWVGDphrK-DGSIVIHNLDYgDNGTFTCDVKNPPDIVG ktsqv MYP0_HETFR : 87- 135: ngvpy IEKwGQFRGRVEWVGDis-KhDGSIVIRNLDYiDNGTFTCDVKNPPDVVG tssdv MYP0_HUMAN : 89- 137: kgqpy IDEvGTFKERIQWVGDprwK-DGSIVIHNLDYsDNGTFTCDVKNPPDIVG ktsqv MYP0_MOUSE : 89- 137: kgqpy IDEvGAFKERIQWVGDprwK-DGSIVIHNLDYsDNGTFTCDVKNPPDIVG ktsqv MYP0_RAT : 89- 137: kgqpy IDEvGTFKERIQWVGDpswK-DGSIVIHNLDYsDNGTFTCDVKNPPDIVG ktsqv I 9: 171.4564 5( 5) V-G-D-x(2,3)-K-x(0,1)-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-[IV]-V-G-x-[ST]-S-[DQ]-V-x-L-x-V-[FY]-[DE]-K-[IV]-P Occurences: 5(5) MYP0_BOVIN : 73- 122: eriqw VGDphrK-DGSIVIHNLDYgDNGTFTCDVKNPPDIVGkTSQVtLyVFEKVP trygv MYP0_HETFR : 100- 149: grvew VGDis-KhDGSIVIRNLDYiDNGTFTCDVKNPPDVVGtSSDVhLtVYDKIP pvgag MYP0_HUMAN : 102- 151: eriqw VGDprwK-DGSIVIHNLDYsDNGTFTCDVKNPPDIVGkTSQVtLyVFEKVP trygv MYP0_MOUSE : 102- 151: eriqw VGDprwK-DGSIVIHNLDYsDNGTFTCDVKNPPDIVGkTSQVtLyVFEKVP trygv MYP0_RAT : 102- 151: eriqw VGDpswK-DGSIVIHNLDYsDNGTFTCDVKNPPDIVGkTSQVtLyVFEKVP trygv J 10: 169.1583 5( 5) Y-[AG]-x-G-x-P-Y-I-x(0,1)-E-x(1,2)-G-[AQT]-F-[KR]-[EG]-R-[IV]-[EQ]-W-V-G-D-[IP]-x(2)-[HK]-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N Occurences: 5(5) MYP0_BOVIN : 53- 102: isifh YAkGqPYIdEv-GTFKERIQWVGDPhrKDGSIVIHNLDYgDNGTFTCDVKN ppdiv MYP0_HETFR : 80- 129: isifh YGnGvPYI-EkwGQFRGRVEWVGDIskHDGSIVIRNLDYiDNGTFTCDVKN ppdvv MYP0_HUMAN : 82- 131: isifh YAkGqPYIdEv-GTFKERIQWVGDPrwKDGSIVIHNLDYsDNGTFTCDVKN ppdiv MYP0_MOUSE : 82- 131: isifh YAkGqPYIdEv-GAFKERIQWVGDPrwKDGSIVIHNLDYsDNGTFTCDVKN ppdiv MYP0_RAT : 82- 131: isifh YAkGqPYIdEv-GTFKERIQWVGDPswKDGSIVIHNLDYsDNGTFTCDVKN ppdiv K 11: 169.1583 5( 5) H-Y-[AG]-x-G-x-P-Y-I-x(0,1)-E-x(1,2)-G-[AQT]-F-[KR]-[EG]-R-[IV]-[EQ]-W-V-G-D-[IP]-x(2)-[HK]-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K Occurences: 5(5) MYP0_BOVIN : 52- 101: aisif HYAkGqPYIdEv-GTFKERIQWVGDPhrKDGSIVIHNLDYgDNGTFTCDVK nppdi MYP0_HETFR : 79- 128: iisif HYGnGvPYI-EkwGQFRGRVEWVGDIskHDGSIVIRNLDYiDNGTFTCDVK nppdv MYP0_HUMAN : 81- 130: aisif HYAkGqPYIdEv-GTFKERIQWVGDPrwKDGSIVIHNLDYsDNGTFTCDVK nppdi MYP0_MOUSE : 81- 130: aisif HYAkGqPYIdEv-GAFKERIQWVGDPrwKDGSIVIHNLDYsDNGTFTCDVK nppdi MYP0_RAT : 81- 130: aisif HYAkGqPYIdEv-GTFKERIQWVGDPswKDGSIVIHNLDYsDNGTFTCDVK nppdi L 12: 169.1583 5( 5) F-H-Y-[AG]-x-G-x-P-Y-I-x(0,1)-E-x(1,2)-G-[AQT]-F-[KR]-[EG]-R-[IV]-[EQ]-W-V-G-D-[IP]-x(2)-[HK]-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D-V Occurences: 5(5) MYP0_BOVIN : 51- 100: daisi FHYAkGqPYIdEv-GTFKERIQWVGDPhrKDGSIVIHNLDYgDNGTFTCDV knppd MYP0_HETFR : 78- 127: diisi FHYGnGvPYI-EkwGQFRGRVEWVGDIskHDGSIVIRNLDYiDNGTFTCDV knppd MYP0_HUMAN : 80- 129: daisi FHYAkGqPYIdEv-GTFKERIQWVGDPrwKDGSIVIHNLDYsDNGTFTCDV knppd MYP0_MOUSE : 80- 129: daisi FHYAkGqPYIdEv-GAFKERIQWVGDPrwKDGSIVIHNLDYsDNGTFTCDV knppd MYP0_RAT : 80- 129: daisi FHYAkGqPYIdEv-GTFKERIQWVGDPswKDGSIVIHNLDYsDNGTFTCDV knppd M 13: 169.1583 5( 5) I-F-H-Y-[AG]-x-G-x-P-Y-I-x(0,1)-E-x(1,2)-G-[AQT]-F-[KR]-[EG]-R-[IV]-[EQ]-W-V-G-D-[IP]-x(2)-[HK]-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D Occurences: 5(5) MYP0_BOVIN : 50- 99: rdais IFHYAkGqPYIdEv-GTFKERIQWVGDPhrKDGSIVIHNLDYgDNGTFTCD vknpp MYP0_HETFR : 77- 126: rdiis IFHYGnGvPYI-EkwGQFRGRVEWVGDIskHDGSIVIRNLDYiDNGTFTCD vknpp MYP0_HUMAN : 79- 128: rdais IFHYAkGqPYIdEv-GTFKERIQWVGDPrwKDGSIVIHNLDYsDNGTFTCD vknpp MYP0_MOUSE : 79- 128: rdais IFHYAkGqPYIdEv-GAFKERIQWVGDPrwKDGSIVIHNLDYsDNGTFTCD vknpp MYP0_RAT : 79- 128: rdais IFHYAkGqPYIdEv-GTFKERIQWVGDPswKDGSIVIHNLDYsDNGTFTCD vknpp N 14: 169.1583 5( 5) S-I-F-H-Y-[AG]-x-G-x-P-Y-I-x(0,1)-E-x(1,2)-G-[AQT]-F-[KR]-[EG]-R-[IV]-[EQ]-W-V-G-D-[IP]-x(2)-[HK]-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C Occurences: 5(5) MYP0_BOVIN : 49- 98: grdai SIFHYAkGqPYIdEv-GTFKERIQWVGDPhrKDGSIVIHNLDYgDNGTFTC dvknp MYP0_HETFR : 76- 125: srdii SIFHYGnGvPYI-EkwGQFRGRVEWVGDIskHDGSIVIRNLDYiDNGTFTC dvknp MYP0_HUMAN : 78- 127: grdai SIFHYAkGqPYIdEv-GTFKERIQWVGDPrwKDGSIVIHNLDYsDNGTFTC dvknp MYP0_MOUSE : 78- 127: grdai SIFHYAkGqPYIdEv-GAFKERIQWVGDPrwKDGSIVIHNLDYsDNGTFTC dvknp MYP0_RAT : 78- 127: grdai SIFHYAkGqPYIdEv-GTFKERIQWVGDPswKDGSIVIHNLDYsDNGTFTC dvknp O 15: 168.2833 5( 5) R-[IV]-[EQ]-W-V-G-D-x(2,3)-K-x(0,1)-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-[IV]-V-G-x-[ST]-S-[DQ]-V-x-L-x-V Occurences: 5(5) MYP0_BOVIN : 69- 117: gtfke RIQWVGDphrK-DGSIVIHNLDYgDNGTFTCDVKNPPDIVGkTSQVtLyV fekvp MYP0_HETFR : 96- 144: gqfrg RVEWVGDis-KhDGSIVIRNLDYiDNGTFTCDVKNPPDVVGtSSDVhLtV ydkip MYP0_HUMAN : 98- 146: gtfke RIQWVGDprwK-DGSIVIHNLDYsDNGTFTCDVKNPPDIVGkTSQVtLyV fekvp MYP0_MOUSE : 98- 146: gafke RIQWVGDprwK-DGSIVIHNLDYsDNGTFTCDVKNPPDIVGkTSQVtLyV fekvp MYP0_RAT : 98- 146: gtfke RIQWVGDpswK-DGSIVIHNLDYsDNGTFTCDVKNPPDIVGkTSQVtLyV fekvp P 16: 168.2316 5( 5) W-V-G-D-x(2,3)-K-x(0,1)-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-[IV]-V-G-x-[ST]-S-[DQ]-V-x-L-x-V-[FY]-[DE]-K Occurences: 5(5) MYP0_BOVIN : 72- 120: keriq WVGDphrK-DGSIVIHNLDYgDNGTFTCDVKNPPDIVGkTSQVtLyVFEK vptry MYP0_HETFR : 99- 147: rgrve WVGDis-KhDGSIVIRNLDYiDNGTFTCDVKNPPDVVGtSSDVhLtVYDK ippvg MYP0_HUMAN : 101- 149: keriq WVGDprwK-DGSIVIHNLDYsDNGTFTCDVKNPPDIVGkTSQVtLyVFEK vptry MYP0_MOUSE : 101- 149: keriq WVGDprwK-DGSIVIHNLDYsDNGTFTCDVKNPPDIVGkTSQVtLyVFEK vptry MYP0_RAT : 101- 149: keriq WVGDpswK-DGSIVIHNLDYsDNGTFTCDVKNPPDIVGkTSQVtLyVFEK vptry Q 17: 167.2864 5( 5) G-D-x(2,3)-K-x(0,1)-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-[IV]-V-G-x-[ST]-S-[DQ]-V-x-L-x-V-[FY]-[DE]-K-[IV]-P Occurences: 5(5) MYP0_BOVIN : 74- 122: riqwv GDphrK-DGSIVIHNLDYgDNGTFTCDVKNPPDIVGkTSQVtLyVFEKVP trygv MYP0_HETFR : 101- 149: rvewv GDis-KhDGSIVIRNLDYiDNGTFTCDVKNPPDVVGtSSDVhLtVYDKIP pvgag MYP0_HUMAN : 103- 151: riqwv GDprwK-DGSIVIHNLDYsDNGTFTCDVKNPPDIVGkTSQVtLyVFEKVP trygv MYP0_MOUSE : 103- 151: riqwv GDprwK-DGSIVIHNLDYsDNGTFTCDVKNPPDIVGkTSQVtLyVFEKVP trygv MYP0_RAT : 103- 151: riqwv GDpswK-DGSIVIHNLDYsDNGTFTCDVKNPPDIVGkTSQVtLyVFEKVP trygv R 18: 166.4207 5( 5) D-[IP]-x(2)-[HK]-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-[IV]-V-G-x(0,1)-T-S-x(1,2)-V-x-L-x-V-[FY]-[DE]-K-[IV]-P-[PT] Occurences: 5(5) MYP0_BOVIN : 75- 123: iqwvg DPhrKDGSIVIHNLDYgDNGTFTCDVKNPPDIVGkTSq-VtLyVFEKVPT rygvv MYP0_HETFR : 102- 150: vewvg DIskHDGSIVIRNLDYiDNGTFTCDVKNPPDVVG-TSsdVhLtVYDKIPP vgagv MYP0_HUMAN : 104- 152: iqwvg DPrwKDGSIVIHNLDYsDNGTFTCDVKNPPDIVGkTSq-VtLyVFEKVPT rygvv MYP0_MOUSE : 104- 152: iqwvg DPrwKDGSIVIHNLDYsDNGTFTCDVKNPPDIVGkTSq-VtLyVFEKVPT rygvv MYP0_RAT : 104- 152: iqwvg DPswKDGSIVIHNLDYsDNGTFTCDVKNPPDIVGkTSq-VtLyVFEKVPT rygvv S 19: 166.2950 5( 5) D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-[IV]-V-G-x(0,1)-T-S-x(1,2)-V-x-L-x-V-[FY]-[DE]-K-[IV]-P-[PT]-x(2)-[AG]-[GV]-V Occurences: 5(5) MYP0_BOVIN : 80- 128: dphrk DGSIVIHNLDYgDNGTFTCDVKNPPDIVGkTSq-VtLyVFEKVPTryGVV lgavi MYP0_HETFR : 107- 155: diskh DGSIVIRNLDYiDNGTFTCDVKNPPDVVG-TSsdVhLtVYDKIPPvgAGV vsgai MYP0_HUMAN : 109- 157: dprwk DGSIVIHNLDYsDNGTFTCDVKNPPDIVGkTSq-VtLyVFEKVPTryGVV lgavi MYP0_MOUSE : 109- 157: dprwk DGSIVIHNLDYsDNGTFTCDVKNPPDIVGkTSq-VtLyVFEKVPTryGVV lgavi MYP0_RAT : 109- 157: dpswk DGSIVIHNLDYsDNGTFTCDVKNPPDIVGkTSq-VtLyVFEKVPTryGVV lgavi T 20: 166.2901 5( 5) D-x(2,3)-K-x(0,1)-D-G-S-I-V-I-[HR]-N-L-D-Y-x-D-N-G-T-F-T-C-D-V-K-N-P-P-D-[IV]-V-G-x-[ST]-S-[DQ]-V-x-L-x-V-[FY]-[DE]-K-[IV]-P-[PT] Occurences: 5(5) MYP0_BOVIN : 75- 123: iqwvg DphrK-DGSIVIHNLDYgDNGTFTCDVKNPPDIVGkTSQVtLyVFEKVPT rygvv MYP0_HETFR : 102- 150: vewvg Dis-KhDGSIVIRNLDYiDNGTFTCDVKNPPDVVGtSSDVhLtVYDKIPP vgagv MYP0_HUMAN : 104- 152: iqwvg DprwK-DGSIVIHNLDYsDNGTFTCDVKNPPDIVGkTSQVtLyVFEKVPT rygvv MYP0_MOUSE : 104- 152: iqwvg DprwK-DGSIVIHNLDYsDNGTFTCDVKNPPDIVGkTSQVtLyVFEKVPT rygvv MYP0_RAT : 104- 152: iqwvg DpswK-DGSIVIHNLDYsDNGTFTCDVKNPPDIVGkTSQVtLyVFEKVPT rygvv Number of patterns evaluated by Pratt:30920 Total running time: 4 seconds