------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 12 sequences from file MULTICOPPER_OXIDASE2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 12 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename MULTICOPPER_OXIDASE2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: ASO_CUCMA 579 ASO_CUCPM 552 ASO_CUCSA 587 CERU_HUMAN 1065 CERU_RAT 1059 COPA_PSESM 609 FET3_YEAST 564 LAC1_EMENI 609 LAC1_NEUCR 619 LAC1_PHLRA 548 LAC2_NEUCR 619 YFE1_YEAST 622 Pratt run started at Thu Feb 6 20:20:58 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 16.6802 12( 12) H-C-H-x(3)-H 2: 16.6802 12( 12) H-x(2)-H-x-H-G 3: 16.6802 12( 12) T-x(2)-Y-H-x-H 4: 15.6802 18( 12) P-x(1,3)-H-x-H-G 5: 15.6802 18( 12) G-x(1,2)-W-x(1,2)-H-x-H 6: 15.1802 13( 12) H-x-H-x(3,4)-Q-x(2,4)-G 7: 15.1802 24( 12) T-x(1,3)-H-x-H-x(0,1)-G 8: 12.5102 13( 12) C-H-x(3)-H 9: 12.5102 24( 12) G-x(4)-H-x-H 10: 12.5102 26( 12) H-x-H-G 11: 12.5102 12( 12) L-x-N-G 12: 12.5102 13( 12) Y-H-x-H 13: 12.5102 15( 12) H-x(4)-H-G 14: 12.5102 20( 12) T-x(3)-H-x-H 15: 12.5102 15( 12) A-x-N-x-G 16: 12.0102 16( 12) L-x(3)-L-x(2,3)-S 17: 12.0102 12( 12) S-x(5)-H-x(0,1)-L 18: 12.0102 21( 12) W-x(1,2)-H-x-H 19: 12.0102 20( 12) P-G-x(2,3)-L 20: 12.0102 15( 12) F-x(4,5)-P-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 26.0791 12( 12) H-C-H-[ILV]-x(2)-H-x(3)-[AG]-[LM] B 2: 24.5055 12( 12) G-x(1,2)-W-x(1,2)-H-[CS]-H-x(4)-[ILMV]-x(2)-[AG] C 3: 24.1911 12( 12) G-x-[FW]-x(2)-H-[CGS]-H-x(4)-[ILMV]-x(2)-[AG] D 4: 22.0775 15( 12) T-x(1,3)-H-x-H-x(0,1)-G-[FILM]-x(4)-[GST]-x(3)-[DNPQS] E 5: 21.9090 12( 12) C-H-[ILV]-x(2)-H-x(3)-[AG]-[LM] F 6: 21.0438 12( 12) T-x-[FHW]-[FY]-H-[AGS]-H G 7: 20.8354 12( 12) W-x(1,2)-H-[CS]-H-x(4)-[ILMV]-x(2)-[AG] H 8: 20.2367 12( 12) H-x-H-x(3,4)-Q-x(2,4)-G-[ILMV]-x(4)-[ILV] I 9: 19.8540 12( 12) H-[PT]-x-H-x-H-G J 10: 19.2736 12( 12) T-x(2)-Y-H-[AGS]-H K 11: 15.7976 13( 12) H-x-H-G-x(3)-[DENQRS]-x(4)-[ADGNQT] L 12: 15.6802 18( 12) P-x(1,3)-H-x-H-G M 13: 14.7633 13( 12) Y-H-[ACGS]-H N 14: 14.4588 12( 12) L-x-N-G-x-[ADGNQ] O 15: 14.2236 12( 12) S-x(5)-H-x(0,1)-L-x-[AEGT] P 16: 12.5102 15( 12) H-x(4)-H-G Q 17: 12.5102 15( 12) A-x-N-x-G R 18: 12.0102 16( 12) L-x(3)-L-x(2,3)-S S 19: 12.0102 12( 12) S-x(5)-H-x(0,1)-L T 20: 12.0102 21( 12) W-x(1,2)-H-x-H Best patterns with alignements: fitness hits(seqs) Pattern A 1: 26.0791 12( 12) H-C-H-[ILV]-x(2)-H-x(3)-[AG]-[LM] Occurences: 12(12) ASO_CUCMA : 536- 547: gvwaf HCHIepHlhmGM gvvfa ASO_CUCPM : 506- 517: gvwaf HCHIepHlhmGM gvvfa ASO_CUCSA : 542- 553: gvwaf HCHIepHlhmGM gvvfa CERU_HUMAN : 1039- 1050: giwll HCHVtdHihaGM ettyt CERU_RAT : 1033- 1044: gtwll HCHVtdHihaGM vttyt COPA_PSESM : 590- 601: grway HCHLlyHmemGM frevr FET3_YEAST : 411- 422: gvwff HCHIewHllqGL glvlv LAC1_EMENI : 585- 596: fpsil HCHIasHqmgGM alall LAC1_NEUCR : 548- 559: gswlm HCHIawHvsgGL snqfl LAC1_PHLRA : 473- 484: gpwfl HCHIdwHleaAL plssl LAC2_NEUCR : 548- 559: gswlm HCHIawHvsgGL snqfl YFE1_YEAST : 496- 507: gvwyf HCHVdwHlqqGL asvfi B 2: 24.5055 12( 12) G-x(1,2)-W-x(1,2)-H-[CS]-H-x(4)-[ILMV]-x(2)-[AG] Occurences: 12(12) ASO_CUCMA : 531- 546: vadnp Gv-WafHCHiephLhmG mgvvf ASO_CUCPM : 501- 516: vadnp Gv-WafHCHiephLhmG mgvvf ASO_CUCSA : 537- 552: vadnp Gv-WafHCHiephLhmG mgvvf CERU_HUMAN : 1034- 1049: fprtp Gi-WllHCHvtdhIhaG metty CERU_RAT : 1028- 1043: fpqtp Gt-WllHCHvtdhIhaG mvtty COPA_PSESM : 585- 600: tadal Gr-WayHCHllyhMemG mfrev FET3_YEAST : 406- 421: kadnp Gv-WffHCHiewhLlqG lglvl LAC1_EMENI : 118- 133: raypa GtfWy-HSHykglMqdG qvgam LAC1_NEUCR : 543- 558: rtdnp Gs-WlmHCHiawhVsgG lsnqf LAC1_PHLRA : 468- 483: dtnnp Gp-WflHCHidwhLeaA lplss LAC2_NEUCR : 543- 558: rtdnp Gs-WlmHCHiawhVsgG lsnqf YFE1_YEAST : 491- 506: radnp Gv-WyfHCHvdwhLqqG lasvf C 3: 24.1911 12( 12) G-x-[FW]-x(2)-H-[CGS]-H-x(4)-[ILMV]-x(2)-[AG] Occurences: 12(12) ASO_CUCMA : 531- 546: vadnp GvWafHCHiephLhmG mgvvf ASO_CUCPM : 501- 516: vadnp GvWafHCHiephLhmG mgvvf ASO_CUCSA : 537- 552: vadnp GvWafHCHiephLhmG mgvvf CERU_HUMAN : 1034- 1049: fprtp GiWllHCHvtdhIhaG metty CERU_RAT : 1028- 1043: fpqtp GtWllHCHvtdhIhaG mvtty COPA_PSESM : 585- 600: tadal GrWayHCHllyhMemG mfrev FET3_YEAST : 406- 421: kadnp GvWffHCHiewhLlqG lglvl LAC1_EMENI : 118- 133: raypa GtFwyHSHykglMqdG qvgam LAC1_NEUCR : 543- 558: rtdnp GsWlmHCHiawhVsgG lsnqf LAC1_PHLRA : 468- 483: dtnnp GpWflHCHidwhLeaA lplss LAC2_NEUCR : 543- 558: rtdnp GsWlmHCHiawhVsgG lsnqf YFE1_YEAST : 491- 506: radnp GvWyfHCHvdwhLqqG lasvf D 4: 22.0775 15( 12) T-x(1,3)-H-x-H-x(0,1)-G-[FILM]-x(4)-[GST]-x(3)-[DNPQS] Occurences: 15(12) ASO_CUCMA : 130- 148: vdnpg TffyHgHlGMqrsaGlygS livdp ASO_CUCPM : 100- 118: vdnpg TffyHgHlGMqrsaGlygS livdp ASO_CUCSA : 135- 153: vdkag TyfyHgHlGMqrsaGlygS livdp CERU_HUMAN : 1043- 1059: lhchv Td--HiHaGMettyTvlqN edtks CERU_RAT : 1037- 1053: lhchv Td--HiHaGMvttyTvlpN qetks COPA_PSESM : 138- 156: vqqng TywyHsHsGFqeqvGvygP lviea FET3_YEAST : 6- 22: mnntn Tsm-HfH-GLfqngTasmD gvpfl LAC1_EMENI : 76- 92: nlpfn Ttv-HwH-GLemreTpeaD gvpgl LAC1_EMENI : 77- 92: lpfnt Tv--HwH-GLemreTpeaD gvpgl LAC1_NEUCR : 141- 157: lksng Tsi-HwH-GMhqrnSniqD gvngv LAC1_PHLRA : 81- 98: atmlk TttiHwH-GFfqhgTnwaD gpafi LAC1_PHLRA : 82- 98: tmlkt Tti-HwH-GFfqhgTnwaD gpafi LAC1_PHLRA : 83- 98: mlktt Ti--HwH-GFfqhgTnwaD gpafi LAC2_NEUCR : 141- 157: lksng Tsi-HwH-GMhqrnSniqD gvngv YFE1_YEAST : 76- 92: qdnta Tsl-HfH-GLfqntSlgnQ lqmdg E 5: 21.9090 12( 12) C-H-[ILV]-x(2)-H-x(3)-[AG]-[LM] Occurences: 12(12) ASO_CUCMA : 537- 547: vwafh CHIepHlhmGM gvvfa ASO_CUCPM : 507- 517: vwafh CHIepHlhmGM gvvfa ASO_CUCSA : 543- 553: vwafh CHIepHlhmGM gvvfa CERU_HUMAN : 1040- 1050: iwllh CHVtdHihaGM ettyt CERU_RAT : 1034- 1044: twllh CHVtdHihaGM vttyt COPA_PSESM : 591- 601: rwayh CHLlyHmemGM frevr FET3_YEAST : 412- 422: vwffh CHIewHllqGL glvlv LAC1_EMENI : 586- 596: psilh CHIasHqmgGM alall LAC1_NEUCR : 549- 559: swlmh CHIawHvsgGL snqfl LAC1_PHLRA : 474- 484: pwflh CHIdwHleaAL plssl LAC2_NEUCR : 549- 559: swlmh CHIawHvsgGL snqfl YFE1_YEAST : 497- 507: vwyfh CHVdwHlqqGL asvfi F 6: 21.0438 12( 12) T-x-[FHW]-[FY]-H-[AGS]-H Occurences: 12(12) ASO_CUCMA : 130- 136: vdnpg TfFYHGH lgmqr ASO_CUCPM : 100- 106: vdnpg TfFYHGH lgmqr ASO_CUCSA : 135- 141: vdkag TyFYHGH lgmqr CERU_HUMAN : 995- 1001: eidlh TvHFHGH sfqyk CERU_RAT : 989- 995: eidlh TvHFHGH sfqyk COPA_PSESM : 138- 144: vqqng TyWYHSH sgfqe FET3_YEAST : 50- 56: dynvg TyWYHSH tdgqy LAC1_EMENI : 119- 125: aypag TfWYHSH ykglm LAC1_NEUCR : 185- 191: atqyg TsWYHSH fsaqy LAC1_PHLRA : 126- 132: pdqag TfWYHSH lstqy LAC2_NEUCR : 185- 191: atqyg TsWYHSH fsaqy YFE1_YEAST : 124- 130: peqvg TfWYHAH mgaqy G 7: 20.8354 12( 12) W-x(1,2)-H-[CS]-H-x(4)-[ILMV]-x(2)-[AG] Occurences: 12(12) ASO_CUCMA : 533- 546: dnpgv WafHCHiephLhmG mgvvf ASO_CUCPM : 503- 516: dnpgv WafHCHiephLhmG mgvvf ASO_CUCSA : 539- 552: dnpgv WafHCHiephLhmG mgvvf CERU_HUMAN : 1036- 1049: rtpgi WllHCHvtdhIhaG metty CERU_RAT : 1030- 1043: qtpgt WllHCHvtdhIhaG mvtty COPA_PSESM : 587- 600: dalgr WayHCHllyhMemG mfrev FET3_YEAST : 408- 421: dnpgv WffHCHiewhLlqG lglvl LAC1_EMENI : 121- 133: pagtf Wy-HSHykglMqdG qvgam LAC1_NEUCR : 545- 558: dnpgs WlmHCHiawhVsgG lsnqf LAC1_PHLRA : 470- 483: nnpgp WflHCHidwhLeaA lplss LAC2_NEUCR : 545- 558: dnpgs WlmHCHiawhVsgG lsnqf YFE1_YEAST : 493- 506: dnpgv WyfHCHvdwhLqqG lasvf H 8: 20.2367 12( 12) H-x-H-x(3,4)-Q-x(2,4)-G-[ILMV]-x(4)-[ILV] Occurences: 12(12) ASO_CUCMA : 134- 150: gtffy HgHlgm-Qrsa-GLygslI vdppq ASO_CUCPM : 104- 120: gtffy HgHlgm-Qrsa-GLygslI vdppq ASO_CUCSA : 139- 155: gtyfy HgHlgm-Qrsa-GLygslI vdppe CERU_HUMAN : 997- 1015: dlhtv HfHghsfQykhrGVyssdV fdifp CERU_RAT : 991- 1009: dlhtv HfHghsfQykhrGIhssdV fdffp COPA_PSESM : 142- 158: gtywy HsHsgf-Qeqv-GVygplV ieake FET3_YEAST : 54- 70: gtywy HsHtdg-Qyed-GMkglfI ikdds LAC1_EMENI : 585- 601: fpsil HcHiashQmg--GMalalL dgvdv LAC1_NEUCR : 189- 205: gtswy HsHfsa-Qygn-GIvgpiV ingpa LAC1_PHLRA : 130- 146: gtfwy HsHlst-Qycd-GLrgpfV vydpa LAC2_NEUCR : 189- 205: gtswy HsHfsa-Qygn-GIvgpiV ingpa YFE1_YEAST : 128- 144: gtfwy HaHmga-Qygd-GMrgafI ihdpe I 9: 19.8540 12( 12) H-[PT]-x-H-x-H-G Occurences: 12(12) ASO_CUCMA : 475- 481: nlsei HPwHlHG hdfwv ASO_CUCPM : 445- 451: nlset HPwHlHG hdfwv ASO_CUCSA : 480- 486: nmsei HPwHlHG hdfwv CERU_HUMAN : 994- 1000: neidl HTvHfHG hsfqy CERU_RAT : 988- 994: neidl HTvHfHG hsfqy COPA_PSESM : 542- 548: dtmmt HPiHlHG mwsdl FET3_YEAST : 341- 347: qdtgt HPfHlHG hafqt LAC1_EMENI : 508- 514: lihpp HPiHkHG nrayi LAC1_NEUCR : 477- 483: afslp HPiHlHG hdfli LAC1_PHLRA : 418- 424: alggp HPfHlHG htfsv LAC2_NEUCR : 477- 483: afslp HPiHlHG hdfli YFE1_YEAST : 418- 424: ydsgr HPfHlHG hnfqi J 10: 19.2736 12( 12) T-x(2)-Y-H-[AGS]-H Occurences: 12(12) ASO_CUCMA : 130- 136: vdnpg TffYHGH lgmqr ASO_CUCPM : 100- 106: vdnpg TffYHGH lgmqr ASO_CUCSA : 135- 141: vdkag TyfYHGH lgmqr CERU_HUMAN : 176- 182: dgncv TriYHSH idapk CERU_RAT : 175- 181: dsncv TriYHSH vdapk COPA_PSESM : 138- 144: vqqng TywYHSH sgfqe FET3_YEAST : 50- 56: dynvg TywYHSH tdgqy LAC1_EMENI : 119- 125: aypag TfwYHSH ykglm LAC1_NEUCR : 185- 191: atqyg TswYHSH fsaqy LAC1_PHLRA : 126- 132: pdqag TfwYHSH lstqy LAC2_NEUCR : 185- 191: atqyg TswYHSH fsaqy YFE1_YEAST : 124- 130: peqvg TfwYHAH mgaqy K 11: 15.7976 13( 12) H-x-H-G-x(3)-[DENQRS]-x(4)-[ADGNQT] Occurences: 13(12) ASO_CUCMA : 90- 102: egvvi HwHGilqRgtpwA dgtas ASO_CUCPM : 60- 72: egvvi HwHGilqRgtpwA dgtas ASO_CUCSA : 95- 107: egvvi HwHGilqRgtpwA dgtas CERU_HUMAN : 835- 847: rpysi HaHGvqtEsstvT ptlpg CERU_HUMAN : 997- 1009: dlhtv HfHGhsfQykhrG vyssd CERU_RAT : 991- 1003: dlhtv HfHGhsfQykhrG ihssd COPA_PSESM : 545- 557: mthpi HlHGmwsDledeD gnfrv FET3_YEAST : 344- 356: gthpf HlHGhafQtiqrD rtydd LAC1_EMENI : 79- 91: fnttv HwHGlemRetpeA dgvpg LAC1_NEUCR : 144- 156: ngtsi HwHGmhqRnsniQ dgvng LAC1_PHLRA : 421- 433: gphpf HlHGhtfSvvrpA gstty LAC2_NEUCR : 144- 156: ngtsi HwHGmhqRnsniQ dgvng YFE1_YEAST : 79- 91: tatsl HfHGlfqNtslgN qlqmd L 12: 15.6802 18( 12) P-x(1,3)-H-x-H-G Occurences: 18(12) ASO_CUCMA : 476- 481: lseih Pw--HlHG hdfwv ASO_CUCPM : 446- 451: lseth Pw--HlHG hdfwv ASO_CUCSA : 481- 486: mseih Pw--HlHG hdfwv CERU_HUMAN : 116- 123: nlasr PytfHsHG ityyk CERU_HUMAN : 831- 838: nmatr PysiHaHG vqtes CERU_RAT : 116- 123: nfasr PytfHaHG vtytk CERU_RAT : 825- 832: nmatr PysiHaHG vktks COPA_PSESM : 543- 548: tmmth Pi--HlHG mwsdl FET3_YEAST : 342- 347: dtgth Pf--HlHG hafqt LAC1_EMENI : 507- 514: dlihp PhpiHkHG nrayi LAC1_EMENI : 509- 514: ihpph Pi--HkHG nrayi LAC1_NEUCR : 476- 483: gafsl PhpiHlHG hdfli LAC1_NEUCR : 478- 483: fslph Pi--HlHG hdfli LAC1_PHLRA : 417- 424: galgg PhpfHlHG htfsv LAC1_PHLRA : 419- 424: lggph Pf--HlHG htfsv LAC2_NEUCR : 476- 483: gafsl PhpiHlHG hdfli LAC2_NEUCR : 478- 483: fslph Pi--HlHG hdfli YFE1_YEAST : 419- 424: dsgrh Pf--HlHG hnfqi M 13: 14.7633 13( 12) Y-H-[ACGS]-H Occurences: 13(12) ASO_CUCMA : 133- 136: pgtff YHGH lgmqr ASO_CUCPM : 103- 106: pgtff YHGH lgmqr ASO_CUCSA : 138- 141: agtyf YHGH lgmqr CERU_HUMAN : 179- 182: cvtri YHSH idapk CERU_RAT : 178- 181: cvtri YHSH vdapk COPA_PSESM : 141- 144: ngtyw YHSH sgfqe COPA_PSESM : 589- 592: lgrwa YHCH llyhm FET3_YEAST : 53- 56: vgtyw YHSH tdgqy LAC1_EMENI : 122- 125: agtfw YHSH ykglm LAC1_NEUCR : 188- 191: ygtsw YHSH fsaqy LAC1_PHLRA : 129- 132: agtfw YHSH lstqy LAC2_NEUCR : 188- 191: ygtsw YHSH fsaqy YFE1_YEAST : 127- 130: vgtfw YHAH mgaqy N 14: 14.4588 12( 12) L-x-N-G-x-[ADGNQ] Occurences: 12(12) ASO_CUCMA : 201- 206: epqti LlNGrG qfdcs ASO_CUCPM : 171- 176: epqti LlNGrG qfdcs ASO_CUCSA : 206- 211: epqsi LiNGkG qfdcs CERU_HUMAN : 56- 61: hsniy LqNGpD rigrl CERU_RAT : 56- 61: qsnfy LrNGpD rigrk COPA_PSESM : 249- 254: atyty LlNGqA pnmnw FET3_YEAST : 276- 281: vvmdn LkNGvN yaffn LAC1_EMENI : 204- 209: cvdsl LiNGrG svycp LAC1_NEUCR : 250- 255: psnnv LfNGfA khptt LAC1_PHLRA : 190- 195: aadtt LiNGlG rcgea LAC2_NEUCR : 250- 255: psnnv LfNGfA khptt YFE1_YEAST : 66- 71: rvely LtNGfQ dntat O 15: 14.2236 12( 12) S-x(5)-H-x(0,1)-L-x-[AEGT] Occurences: 12(12) ASO_CUCMA : 472- 481: mkenl SeihpwH-LhG hdfwv ASO_CUCPM : 442- 451: mkenl SethpwH-LhG hdfwv ASO_CUCSA : 477- 486: lnpnm SeihpwH-LhG hdfwv CERU_HUMAN : 337- 346: gewml ScqnlnH-LkA glqaf CERU_RAT : 336- 345: gvwml ScqnlnH-LkA glqaf COPA_PSESM : 493- 502: dgrep SrtielH-LtG hmekf FET3_YEAST : 87- 97: eelsl SlsewyHdLvT dltks LAC1_EMENI : 229- 238: dtall SvlegtH-LtE kgclq LAC1_NEUCR : 474- 483: pdgaf SlphpiH-LhG hdfli LAC1_PHLRA : 511- 520: ptcal SttlwtH-LiT sgfas LAC2_NEUCR : 474- 483: pdgaf SlphpiH-LhG hdfli YFE1_YEAST : 415- 424: lnnyd SgrhpfH-LhG hnfqi P 16: 12.5102 15( 12) H-x(4)-H-G Occurences: 15(12) ASO_CUCMA : 475- 481: nlsei HpwhlHG hdfwv ASO_CUCPM : 445- 451: nlset HpwhlHG hdfwv ASO_CUCSA : 480- 486: nmsei HpwhlHG hdfwv CERU_HUMAN : 295- 301: nevdv HaaffHG qaltn CERU_HUMAN : 994- 1000: neidl HtvhfHG hsfqy CERU_RAT : 294- 300: nevdv HsalfHG qalts CERU_RAT : 988- 994: neidl HtvhfHG hsfqy COPA_PSESM : 542- 548: dtmmt HpihlHG mwsdl FET3_YEAST : 341- 347: qdtgt HpfhlHG hafqt LAC1_EMENI : 508- 514: lihpp HpihkHG nrayi LAC1_NEUCR : 477- 483: afslp HpihlHG hdfli LAC1_PHLRA : 87- 93: ttihw HgffqHG tnwad LAC1_PHLRA : 418- 424: alggp HpfhlHG htfsv LAC2_NEUCR : 477- 483: afslp HpihlHG hdfli YFE1_YEAST : 418- 424: ydsgr HpfhlHG hnfqi Q 17: 12.5102 15( 12) A-x-N-x-G Occurences: 15(12) ASO_CUCMA : 112- 116: sisqc AiNpG etffy ASO_CUCMA : 527- 531: airfv AdNpG vwafh ASO_CUCPM : 82- 86: sisqc AiNpG etffy ASO_CUCPM : 497- 501: airfv AdNpG vwafh ASO_CUCSA : 117- 121: sisqc AiNpG etfty ASO_CUCSA : 533- 537: airfv AdNpG vwafh CERU_HUMAN : 328- 332: daymv AqNpG ewmls CERU_RAT : 327- 331: dvsmv AqNpG vwmls COPA_PSESM : 67- 71: rrtam AiNgG lpgpl FET3_YEAST : 402- 406: virfk AdNpG vwffh LAC1_EMENI : 12- 16: lfpll AlNlG lshar LAC1_NEUCR : 403- 407: ntnsi AlNtG ntipi LAC1_PHLRA : 58- 62: pgpli AgNkG dnfqi LAC2_NEUCR : 403- 407: ntnsi AlNtG ntipi YFE1_YEAST : 487- 491: vlrfr AdNpG vwyfh R 18: 12.0102 16( 12) L-x(3)-L-x(2,3)-S Occurences: 16(12) ASO_CUCMA : 325- 332: ppglt LlnyLpn-S vsklp ASO_CUCPM : 295- 302: ppglt LlnyLpn-S vsklp ASO_CUCSA : 330- 337: ppglt LlnyLpn-S asklp CERU_HUMAN : 6- 14: mkili LgifLflcS tpawa CERU_RAT : 6- 14: mkfll LsalLflhS slawt CERU_RAT : 628- 635: gnlpg LnmcLge-S ivwyl COPA_PSESM : 188- 196: edpvs LmrtLkkqS dyynf FET3_YEAST : 95- 102: ewyhd LvtdLtk-S fmsvy LAC1_EMENI : 11- 18: vlfpl LalnLgl-S harfv LAC1_NEUCR : 389- 396: ldlnd LkpvLqr-S lntns LAC1_NEUCR : 393- 401: dlkpv LqrsLntnS ialnt LAC1_PHLRA : 480- 487: hidwh LeaaLpl-S slrts LAC1_PHLRA : 480- 488: hidwh LeaaLplsS lrtsl LAC1_PHLRA : 514- 521: alstt LwthLit-S gfasi LAC2_NEUCR : 389- 396: ldlnd LkpvLqr-S lntns LAC2_NEUCR : 393- 401: dlkpv LqrsLntnS ialnt YFE1_YEAST : 216- 223: ylfrf LnvgLfv-S qyiil S 19: 12.0102 12( 12) S-x(5)-H-x(0,1)-L Occurences: 12(12) ASO_CUCMA : 472- 479: mkenl SeihpwH-L hghdf ASO_CUCPM : 442- 449: mkenl SethpwH-L hghdf ASO_CUCSA : 477- 484: lnpnm SeihpwH-L hghdf CERU_HUMAN : 337- 344: gewml ScqnlnH-L kaglq CERU_RAT : 336- 343: gvwml ScqnlnH-L kaglq COPA_PSESM : 493- 500: dgrep SrtielH-L tghme FET3_YEAST : 87- 95: eelsl SlsewyHdL vtdlt LAC1_EMENI : 229- 236: dtall SvlegtH-L tekgc LAC1_NEUCR : 474- 481: pdgaf SlphpiH-L hghdf LAC1_PHLRA : 511- 518: ptcal SttlwtH-L itsgf LAC2_NEUCR : 474- 481: pdgaf SlphpiH-L hghdf YFE1_YEAST : 415- 422: lnnyd SgrhpfH-L hghnf T 20: 12.0102 21( 12) W-x(1,2)-H-x-H Occurences: 21(12) ASO_CUCMA : 477- 482: seihp WhlHgH dfwvl ASO_CUCMA : 533- 538: dnpgv WafHcH iephl ASO_CUCPM : 447- 452: sethp WhlHgH dfwvl ASO_CUCPM : 503- 508: dnpgv WafHcH iephl ASO_CUCSA : 482- 487: seihp WhlHgH dfwvl ASO_CUCSA : 539- 544: dnpgv WafHcH iephl CERU_HUMAN : 1036- 1041: rtpgi WllHcH vtdhi CERU_RAT : 1030- 1035: qtpgt WllHcH vtdhi COPA_PSESM : 140- 144: qngty Wy-HsH sgfqe COPA_PSESM : 587- 592: dalgr WayHcH llyhm FET3_YEAST : 52- 56: nvgty Wy-HsH tdgqy FET3_YEAST : 408- 413: dnpgv WffHcH iewhl LAC1_EMENI : 121- 125: pagtf Wy-HsH ykglm LAC1_NEUCR : 187- 191: qygts Wy-HsH fsaqy LAC1_NEUCR : 545- 550: dnpgs WlmHcH iawhv LAC1_PHLRA : 128- 132: qagtf Wy-HsH lstqy LAC1_PHLRA : 470- 475: nnpgp WflHcH idwhl LAC2_NEUCR : 187- 191: qygts Wy-HsH fsaqy LAC2_NEUCR : 545- 550: dnpgs WlmHcH iawhv YFE1_YEAST : 126- 130: qvgtf Wy-HaH mgaqy YFE1_YEAST : 493- 498: dnpgv WyfHcH vdwhl Number of patterns evaluated by Pratt:13706 Total running time: 21 seconds