------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 19 sequences from file MULTICOPPER_OXIDASE1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 19 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 49 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename MULTICOPPER_OXIDASE1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: ASO_CUCMA 579 ASO_CUCPM 552 ASO_CUCSA 587 CERU_HUMAN 1065 CERU_RAT 1059 COPA_PSESM 609 FA5_HUMAN 2224 FA8_HUMAN 2351 FA8_MOUSE 2319 FA8_PIG 869 FET3_YEAST 564 LAC1_EMENI 609 LAC1_NEUCR 619 LAC1_PHLRA 548 LAC2_NEUCR 619 RUS1_THIFE 154 RUS2_THIFE 155 RUS3_THIFE 155 YFE1_YEAST 622 Pratt run started at Thu Feb 6 20:20:49 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 11.5102 45( 19) G-x(2)-G-x(1,3)-I 2: 11.5102 36( 19) G-x(4,5)-V-x(4,5)-G 3: 11.5102 26( 19) G-x(5)-V-x(3,5)-G 4: 11.5102 34( 19) A-x(1,2)-G-x(3,4)-V 5: 11.5102 25( 19) G-x(3,4)-A-x(4,5)-I 6: 11.5102 36( 19) A-x(2,3)-P-x(0,1)-G 7: 11.5102 38( 19) L-x(3,4)-T-x(4,5)-G 8: 11.5102 41( 19) L-x(2,3)-T-x(4,5)-G 9: 11.5102 28( 19) L-x(1,3)-T-x(4)-G 10: 11.0102 37( 19) A-x(0,2)-G-x(2,3)-G 11: 11.0102 36( 19) A-x(0,2)-G-x(1,2)-G 12: 11.0102 43( 19) P-x(2,4)-A-x(1,2)-G 13: 11.0102 50( 19) A-x(0,2)-G-x(3,4)-V 14: 11.0102 50( 19) G-x(3,5)-V-x(3,4)-G 15: 11.0102 50( 19) A-x(0,1)-G-x(3,5)-S 16: 11.0102 29( 19) V-x(0,1)-G-x(1,3)-S 17: 11.0102 34( 19) I-x(3,4)-G-x(1,3)-V 18: 11.0102 46( 19) P-x(0,2)-I-x(2,3)-G 19: 11.0102 47( 19) P-x(3,4)-T-x(3,5)-P 20: 11.0102 28( 19) G-x(0,1)-P-x(2,4)-V Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 11.5102 45( 19) G-x(2)-G-x(1,3)-I B 2: 11.5102 36( 19) G-x(4,5)-V-x(4,5)-G C 3: 11.5102 26( 19) G-x(5)-V-x(3,5)-G D 4: 11.5102 34( 19) A-x(1,2)-G-x(3,4)-V E 5: 11.5102 25( 19) G-x(3,4)-A-x(4,5)-I F 6: 11.5102 36( 19) A-x(2,3)-P-x(0,1)-G G 7: 11.5102 38( 19) L-x(3,4)-T-x(4,5)-G H 8: 11.5102 41( 19) L-x(2,3)-T-x(4,5)-G I 9: 11.5102 28( 19) L-x(1,3)-T-x(4)-G J 10: 11.0102 37( 19) A-x(0,2)-G-x(2,3)-G K 11: 11.0102 36( 19) A-x(0,2)-G-x(1,2)-G L 12: 11.0102 43( 19) P-x(2,4)-A-x(1,2)-G M 13: 11.0102 50( 19) A-x(0,2)-G-x(3,4)-V N 14: 11.0102 50( 19) G-x(3,5)-V-x(3,4)-G O 15: 11.0102 50( 19) A-x(0,1)-G-x(3,5)-S P 16: 11.0102 29( 19) V-x(0,1)-G-x(1,3)-S Q 17: 11.0102 34( 19) I-x(3,4)-G-x(1,3)-V R 18: 11.0102 46( 19) P-x(0,2)-I-x(2,3)-G S 19: 11.0102 47( 19) P-x(3,4)-T-x(3,5)-P T 20: 11.0102 28( 19) G-x(0,1)-P-x(2,4)-V Best patterns with alignements: fitness hits(seqs) Pattern A 1: 11.5102 45( 19) G-x(2)-G-x(1,3)-I Occurences: 45(19) ASO_CUCMA : 144- 150: mqrsa GlyGsl-I vdppq ASO_CUCPM : 114- 120: mqrsa GlyGsl-I vdppq ASO_CUCSA : 149- 155: mqrsa GlyGsl-I vdppe CERU_HUMAN : 91- 96: kpvwl GflGp--I ikaet CERU_HUMAN : 91- 97: kpvwl GflGpi-I kaetg CERU_HUMAN : 192- 198: kdias GliGpl-I ickkd CERU_HUMAN : 192- 199: kdias GliGpliI ckkds CERU_HUMAN : 447- 453: eeehl GilGpv-I waevg CERU_HUMAN : 552- 559: kdift GliGpmkI ckkgs CERU_HUMAN : 892- 898: kdlys GliGpl-I vcrrp CERU_RAT : 91- 97: kpawl GflGpv-I kaevg CERU_RAT : 191- 197: kdias GliGpl-I lckkg CERU_RAT : 446- 452: deehl GilGpv-I waevg CERU_RAT : 546- 553: kdift GliGpmkI ckkgs CERU_RAT : 800- 806: eeehl GilGpl-I hadvg CERU_RAT : 886- 892: kdlis GliGpl-I vcrks COPA_PSESM : 152- 159: fqeqv GvyGplvI eakep FA5_HUMAN : 185- 192: edfns GliGpllI ckkgt FA5_HUMAN : 301- 307: anmtv GpeGkw-I isslt FA5_HUMAN : 301- 308: anmtv GpeGkwiI ssltp FA5_HUMAN : 417- 422: nmked GilGp--I iraqv FA5_HUMAN : 417- 423: nmked GilGpi-I raqvr FA5_HUMAN : 518- 525: rdias GliGlllI cksrs FA5_HUMAN : 1642- 1647: yeehl GilGp--I iraev FA5_HUMAN : 1642- 1648: yeehl GilGpi-I raevd FA5_HUMAN : 1743- 1750: kdihs GliGpllI cqkgi FA8_HUMAN : 89- 95: rppwm GllGpt-I qaevy FA8_HUMAN : 565- 572: rdlas GliGpllI cykes FA8_HUMAN : 1547- 1552: gsllq GteGa--I kwnea FA8_HUMAN : 1776- 1782: lnehl GllGpy-I raeve FA8_MOUSE : 90- 96: rppwm GllGpt-I wtevh FA8_MOUSE : 565- 572: rdlas GliGpllI cykes FA8_MOUSE : 1745- 1751: lnehl GllGpy-I raeve FA8_MOUSE : 1837- 1844: rdmhs GliGpllI chant FA8_PIG : 573- 578: tlema GgqGk--I salgk FA8_PIG : 637- 643: vscah GdlGqe-I flqkt FA8_PIG : 854- 860: lnkhl GllGpy-I raeve FET3_YEAST : 64- 70: gqyed GmkGlf-I ikdds FET3_YEAST : 64- 71: gqyed GmkGlfiI kddsf FET3_YEAST : 499- 504: fscfa GilGi--I tiaiy FET3_YEAST : 499- 506: fscfa GilGiitI aiygm LAC1_EMENI : 133- 140: glmqd GqvGamyI rrkpd LAC1_NEUCR : 99- 104: tdnwi GpdGv--I kdkvm LAC1_NEUCR : 199- 204: aqygn GivGp--I vingp LAC1_NEUCR : 199- 206: aqygn GivGpivI ngpas LAC1_PHLRA : 292- 297: igitt GfaGg--I nsail LAC2_NEUCR : 99- 104: tdnwl GpdGv--I kdkvm LAC2_NEUCR : 199- 204: aqygn GivGp--I vingp LAC2_NEUCR : 199- 206: aqygn GivGpivI ngpas RUS1_THIFE : 146- 151: ghaat GmfGk--I ivk RUS1_THIFE : 146- 152: ghaat GmfGki-I vk RUS2_THIFE : 147- 152: ghaat GmfGk--I vvk RUS3_THIFE : 147- 152: ghaat GmfGk--I ivk RUS3_THIFE : 147- 153: ghaat GmfGki-I vk YFE1_YEAST : 138- 144: aqygd GmrGaf-I ihdpe YFE1_YEAST : 138- 145: aqygd GmrGafiI hdpee YFE1_YEAST : 582- 589: istii GvwGlysI aqygi B 2: 11.5102 36( 19) G-x(4,5)-V-x(4,5)-G Occurences: 36(19) ASO_CUCMA : 262- 273: lnfai GnhpllVvead-G nyvqp ASO_CUCMA : 481- 492: pwhlh Ghdfw-VlgygdG kftae ASO_CUCPM : 232- 243: lnfai GnhqllVvead-G nyvqp ASO_CUCPM : 451- 462: pwhlh Ghdfw-VlgygdG kfsae ASO_CUCSA : 267- 278: lnfai GnhellVvead-G nyvqp ASO_CUCSA : 486- 497: pwhlh Ghdfw-VlgygeG kfyap CERU_HUMAN : 402- 412: nltap Gsdsa-Vffeq-G ttrig CERU_HUMAN : 447- 458: eeehl Gilgp-ViwaevG dtirv CERU_HUMAN : 458- 469: iwaev Gdtir-VtfhnkG aypls CERU_HUMAN : 1009- 1021: qykhr GvyssdVfdifpG tyqtl CERU_RAT : 27- 38: khyyi Gitea-VwdyasG seeke CERU_RAT : 91- 102: kpawl Gflgp-VikaevG dkvsv CERU_RAT : 401- 411: nltsl Gsdsr-Vffeq-G atrig CERU_RAT : 446- 457: deehl Gilgp-ViwaevG diirv CERU_RAT : 457- 468: iwaev Gdiir-VtfhnkG qfpls CERU_RAT : 714- 724: vnqck Gqfed-Vtlyq-G ertyy CERU_RAT : 1003- 1015: qykhr GihssdVfdffpG tyqtl COPA_PSESM : 13- 24: rtfvk GlaaagVlggl-G lwrsp COPA_PSESM : 288- 298: dirip Glkmt-Vvasd-G qfvnp FA5_HUMAN : 4- 15: mfp GcprlwVlvvl-G tswvg FA5_HUMAN : 648- 659: lfpmr Gesvt-VtmdnvG twmlt FA5_HUMAN : 1835- 1846: llnig GsqdihVvhfh-G qtlle FA5_HUMAN : 2009- 2020: wqifk GnstrnVmyfn-G nsdas FA8_HUMAN : 266- 278: lpgli GchrksVywhviG mgttp FA8_MOUSE : 267- 279: lpgli GchrksVywhviG mgttp FA8_PIG : 358- 369: lltss Gsgks-VkgqssG qgrir FA8_PIG : 592- 603: gplas GklekaVlssa-G lseas FET3_YEAST : 421- 432: whllq GlglvlVedpf-G iqdah LAC1_EMENI : 388- 400: pkaai GphtdtVgymnyG ggnts LAC1_NEUCR : 263- 273: pttga Gqyat-Vsltk-G kkhrl LAC1_PHLRA : 424- 434: pfhlh Ghtfs-Vvrpa-G sttyn LAC2_NEUCR : 263- 273: pttga Gqyat-Vsltk-G kkhrl RUS1_THIFE : 131- 141: whpta Gtyyy-Vcqip-G haatg RUS2_THIFE : 132- 142: whpta Gtyyy-Vcqip-G haatg RUS3_THIFE : 132- 142: whpta Gtyyy-Vcqip-G haatg YFE1_YEAST : 424- 435: pfhlh GhnfqiVqksp-G fhvde C 3: 11.5102 26( 19) G-x(5)-V-x(3,5)-G Occurences: 26(19) ASO_CUCMA : 262- 273: lnfai GnhpllVvead-G nyvqp ASO_CUCPM : 232- 243: lnfai GnhqllVvead-G nyvqp ASO_CUCSA : 267- 278: lnfai GnhellVvead-G nyvqp CERU_HUMAN : 1009- 1021: qykhr GvyssdVfdifpG tyqtl CERU_RAT : 1003- 1015: qykhr GihssdVfdffpG tyqtl COPA_PSESM : 13- 24: rtfvk GlaaagVlggl-G lwrsp COPA_PSESM : 207- 217: hkrtv GdfvndVadk--G waatv COPA_PSESM : 288- 298: dirip GlkmtvVasd--G qfvnp FA5_HUMAN : 4- 15: mfp GcprlwVlvvl-G tswvg FA5_HUMAN : 1835- 1846: llnig GsqdihVvhfh-G qtlle FA5_HUMAN : 2009- 2020: wqifk GnstrnVmyfn-G nsdas FA8_HUMAN : 266- 278: lpgli GchrksVywhviG mgttp FA8_MOUSE : 267- 279: lpgli GchrksVywhviG mgttp FA8_PIG : 248- 258: hessl GenvspVesd--G ifeke FA8_PIG : 592- 603: gplas GklekaVlssa-G lseas FET3_YEAST : 421- 432: whllq GlglvlVedpf-G iqdah LAC1_EMENI : 39- 49: gspng GtaremVftn--G eypgp LAC1_EMENI : 388- 400: pkaai GphtdtVgymnyG ggnts LAC1_NEUCR : 335- 345: anqav GnywfnVtfg--G sklcg LAC1_PHLRA : 40- 50: avspd GfsrqaVlae--G vfpgp LAC1_PHLRA : 424- 434: pfhlh GhtfsvVrpa--G sttyn LAC2_NEUCR : 335- 345: anqav GnywfnVtfg--G ndlcg RUS1_THIFE : 107- 117: kpiva GtgfspVpkd--G kfgys RUS2_THIFE : 108- 118: dpiva GtgfspVpkd--G kfgyt RUS3_THIFE : 108- 118: kpiva GtgfspVpkd--G kfgys YFE1_YEAST : 424- 435: pfhlh GhnfqiVqksp-G fhvde D 4: 11.5102 34( 19) A-x(1,2)-G-x(3,4)-V Occurences: 34(19) ASO_CUCMA : 68- 75: gptir AnaGdtv-V velin ASO_CUCMA : 68- 76: gptir AnaGdtvvV elink ASO_CUCMA : 552- 558: mgvvf Ae-Gvek-V gript ASO_CUCPM : 38- 45: gptir AnaGdsv-V veltn ASO_CUCPM : 38- 46: gptir AnaGdsvvV eltnk ASO_CUCPM : 522- 528: mgvvf Ae-Gvek-V gript ASO_CUCSA : 73- 80: gptir AnaGdiv-V veltn ASO_CUCSA : 73- 81: gptir AnaGdivvV eltnk ASO_CUCSA : 558- 564: mgvvf Ae-Gvhm-V gmipp ASO_CUCSA : 573- 580: ppkal Ac-GstalV knypr CERU_HUMAN : 99- 107: gpiik AetGdkvyV hlknl CERU_HUMAN : 400- 407: kenlt Ap-GsdsaV ffeqg CERU_HUMAN : 455- 463: gpviw AevGdtirV tfhnk CERU_HUMAN : 567- 574: kgslh An-GrqkdV dkefy CERU_RAT : 88- 96: tidkp AwlGflgpV ikaev CERU_RAT : 99- 107: gpvik AevGdkvsV hvknf CERU_RAT : 454- 462: gpviw AevGdiirV tfhnk CERU_RAT : 561- 568: kgsll Ad-GrqkdV dkefy CERU_RAT : 808- 816: gplih AdvGakvkV vfknm COPA_PSESM : 214- 222: fvndv AdkGwaatV adrkm COPA_PSESM : 341- 347: drtgy Ar-Gtla-V reglv FA5_HUMAN : 92- 100: gptly AevGdiikV hfknk FA8_HUMAN : 1885- 1892: ntlnp Ah-GrqvtV qefal FA8_MOUSE : 1853- 1860: ntlnp Ah-GrqvsV qefal FA8_PIG : 324- 330: dkntt As-Glnh-V snwik FET3_YEAST : 258- 266: pyeke AiyGepdhV itvdv LAC1_EMENI : 355- 362: yairi AvnGadq-V msvya LAC1_NEUCR : 24- 30: vlaap Ap-Gteg-V nlltp LAC1_NEUCR : 194- 201: hshfs AqyGngi-V gpivi LAC1_PHLRA : 335- 342: pltna AapGlpe-V ggvdl LAC1_PHLRA : 336- 342: ltnaa Ap-Glpe-V ggvdl LAC2_NEUCR : 24- 30: vlaap Ap-Gteg-V nlltp LAC2_NEUCR : 194- 201: hshfs AqyGngi-V gpivi RUS1_THIFE : 106- 113: ikpiv AgtGfsp-V pkdgk RUS2_THIFE : 107- 114: idpiv AgtGfsp-V pkdgk RUS3_THIFE : 107- 114: ikpiv AgtGfsp-V pkdgk YFE1_YEAST : 590- 597: glysi AqyGige-V ipnde E 5: 11.5102 25( 19) G-x(3,4)-A-x(4,5)-I Occurences: 25(19) ASO_CUCMA : 98- 108: gilqr Gtpw-AdgtasI sqcai ASO_CUCPM : 68- 78: gilqr Gtpw-AdgtasI sqcai ASO_CUCSA : 68- 78: ngefp GptirAnagd-I vvvel ASO_CUCSA : 103- 113: gilqr Gtpw-AdgtasI sqcai CERU_HUMAN : 450- 461: hlgil GpviwAevgdtI rvtfh CERU_RAT : 449- 459: hlgil GpviwAevgd-I irvtf CERU_RAT : 449- 460: hlgil GpviwAevgdiI rvtfh COPA_PSESM : 513- 523: awsfd Gikf-AdaqplI lkyge FA5_HUMAN : 87- 97: isgll GptlyAevgd-I ikvhf FA5_HUMAN : 87- 98: isgll GptlyAevgdiI kvhfk FA5_HUMAN : 1645- 1656: hlgil GpiirAevddvI qvrfk FA8_HUMAN : 1779- 1790: hlgll GpyirAevednI mvtfr FA8_HUMAN : 1950- 1959: mdtlp Glvm-Aqdqr-I rwyll FA8_HUMAN : 2198- 2209: csmpl GmeskAisdaqI tassy FA8_MOUSE : 1748- 1759: hlgll GpyirAevednI mvtfk FA8_MOUSE : 1918- 1927: mdtlp Glvm-Aqdqr-I rwyll FA8_PIG : 857- 868: hlgll GpyirAevednI m FET3_YEAST : 279- 288: dnlkn Gvny-Affnn-I tytap LAC1_EMENI : 330- 341: evemv GvysgAryavmI kldqt LAC1_NEUCR : 117- 128: ndkii GptiqAdwgdyI eitvi LAC1_PHLRA : 93- 103: gffqh Gtnw-AdgpafI nqcpi LAC1_PHLRA : 180- 191: taarl GspfpAadttlI nglgr LAC2_NEUCR : 117- 128: ndnii GptiqAdwgdyI eitvi RUS1_THIFE : 92- 101: ditkk Gppf-Avmpn-I kpiva RUS2_THIFE : 93- 102: ditkk Gppy-Avmpv-I dpiva RUS3_THIFE : 93- 102: ditkk Gppf-Avmpn-I kpiva YFE1_YEAST : 356- 365: vnlgd Gvky-Affnn-I tyvtp F 6: 11.5102 36( 19) A-x(2,3)-P-x(0,1)-G Occurences: 36(19) ASO_CUCMA : 112- 116: sisqc Ain-P-G etffy ASO_CUCMA : 527- 531: airfv Adn-P-G vwafh ASO_CUCPM : 82- 86: sisqc Ain-P-G etffy ASO_CUCPM : 497- 501: airfv Adn-P-G vwafh ASO_CUCSA : 117- 121: sisqc Ain-P-G etfty ASO_CUCSA : 533- 537: airfv Adn-P-G vwafh CERU_HUMAN : 328- 332: daymv Aqn-P-G ewmls CERU_RAT : 327- 331: dvsmv Aqn-P-G vwmls CERU_RAT : 841- 846: ksstv AptlP-G evrty COPA_PSESM : 119- 124: pglsf AgieP-G gvyvy COPA_PSESM : 119- 125: pglsf AgiePgG vyvyq FA5_HUMAN : 141- 145: ekmdd Ava-P-G reyty FA5_HUMAN : 474- 478: ntmir Avq-P-G etyty FA5_HUMAN : 989- 993: estpl Ank-P-G kqsgh FA5_HUMAN : 1111- 1116: ndtgq AscpP-G lyqtv FA5_HUMAN : 1111- 1116: ndtgq Asc-PpG lyqtv FA5_HUMAN : 1876- 1880: tlemk Ask-P-G wwlln FA8_HUMAN : 1557- 1561: ikwne Anr-P-G kvpfl FA8_MOUSE : 507- 513: vsplh ArrlPrG ikhvk FA8_PIG : 232- 237: shfig Agv-PlG steed FET3_YEAST : 402- 406: virfk Adn-P-G vwffh FET3_YEAST : 478- 483: envqh Afi-PtG ftkkg LAC1_EMENI : 91- 96: retpe AdgvP-G ltqtp LAC1_NEUCR : 21- 26: pplvl AapaP-G tegvn LAC1_NEUCR : 22- 26: plvla Apa-P-G tegvn LAC1_PHLRA : 34- 40: fhivn AavsPdG fsrqa LAC1_PHLRA : 35- 40: hivna Avs-PdG fsrqa LAC1_PHLRA : 334- 338: apltn Aaa-P-G lpevg LAC1_PHLRA : 388- 394: gaqsa AdllPsG svyal LAC2_NEUCR : 21- 26: pplvl AapaP-G tegvn LAC2_NEUCR : 22- 26: plvla Apa-P-G tegvn RUS1_THIFE : 42- 47: vhvva AavlP-G fpfps RUS1_THIFE : 43- 47: hvvaa Avl-P-G fpfps RUS2_THIFE : 43- 48: vhvva AavlP-G fpfps RUS2_THIFE : 44- 48: hvvaa Avl-P-G fpfps RUS3_THIFE : 43- 48: vhvva AavlP-G fpfps RUS3_THIFE : 44- 48: hvvaa Avl-P-G fpfps YFE1_YEAST : 487- 491: vlrfr Adn-P-G vwyfh G 7: 11.5102 38( 19) L-x(3,4)-T-x(4,5)-G Occurences: 38(19) ASO_CUCMA : 95- 104: hwhgi Lqrg-Tpwad-G tasis ASO_CUCPM : 65- 74: hwhgi Lqrg-Tpwad-G tasis ASO_CUCSA : 100- 109: hwhgi Lqrg-Tpwad-G tasis ASO_CUCSA : 382- 393: rynrr LfllnTqnrinG fmkwa CERU_HUMAN : 1038- 1049: pgiwl LhchvTdhihaG metty CERU_RAT : 677- 687: fphks LtllmTpdte-G sfdve CERU_RAT : 1032- 1043: pgtwl LhchvTdhihaG mvtty COPA_PSESM : 93- 103: rvrnr Ldaa-TsihwhG iilpp FA5_HUMAN : 11- 22: prlwv LvvlgTswvgwG sqgte FA5_HUMAN : 85- 95: stisg Llgp-TlyaevG diikv FA5_HUMAN : 894- 903: kvgrh Lsqd-Tgsps-G mrpwe FA5_HUMAN : 1406- 1416: pltpd Ldqm-TlspdlG etdls FA5_HUMAN : 1624- 1635: vfrky LdstfTkrdprG eyeeh FA8_HUMAN : 313- 323: spitf Ltaq-TllmdlG qfllf FA8_HUMAN : 1246- 1257: nfmkn LfllsTrqnveG sydga FA8_HUMAN : 1464- 1473: knnls Lail-Tlemt-G dqrev FA8_HUMAN : 1524- 1535: iyqkd LfpteTsngspG hldlv FA8_MOUSE : 314- 324: spitf Ltaq-TllidlG qfllf FA8_MOUSE : 1501- 1511: qeeei Lpte-TshgspG hlnlm FA8_PIG : 564- 573: rnnls Lpfl-Tlema-G gqgki FA8_PIG : 564- 574: rnnls Lpfl-TlemagG qgkis FET3_YEAST : 13- 23: mhfhg LfqngTasmd-G vpflt FET3_YEAST : 39- 49: pgstm Lynf-TvdynvG tywyh FET3_YEAST : 501- 510: cfagi Lgii-Tiaiy-G mmdme LAC1_EMENI : 72- 82: lvinn LpfntTvhwh-G lemre LAC1_EMENI : 72- 82: lvinn Lpfn-TtvhwhG lemre LAC1_EMENI : 83- 93: vhwhg LemreTpead-G vpglt LAC1_NEUCR : 89- 99: trryk LtlteTdnwi-G pdgvi LAC1_NEUCR : 136- 147: tvink LksngTsihwhG mhqrn LAC1_PHLRA : 79- 88: tnatm Lktt-Tihwh-G ffqhg LAC1_PHLRA : 328- 338: lsesn Lapl-TnaaapG lpevg LAC1_PHLRA : 495- 505: rtslt Lrpl-TlsprtG ptcal LAC2_NEUCR : 89- 99: trryk LtlteTdnwl-G pdgvi LAC2_NEUCR : 136- 147: tvink LksngTsihwhG mhqrn RUS1_THIFE : 19- 28: evkam Lqkd-Tgkas-G dtvty RUS2_THIFE : 19- 28: qvkam Lekd-Tgkvs-G dtvty RUS3_THIFE : 19- 28: qvkam Lqkd-Tgkas-G dtvty YFE1_YEAST : 113- 123: pgqty Lynf-TvpeqvG tfwyh YFE1_YEAST : 292- 303: vvppe LqlnqTiqmryG hslpe YFE1_YEAST : 575- 585: egyla Liis-TiigvwG lysia H 8: 11.5102 41( 19) L-x(2,3)-T-x(4,5)-G Occurences: 41(19) ASO_CUCMA : 95- 104: hwhgi LqrgTpwad-G tasis ASO_CUCMA : 379- 388: nrrif Lln-TqnvinG yvkwa ASO_CUCPM : 65- 74: hwhgi LqrgTpwad-G tasis ASO_CUCPM : 349- 358: nrrif Lln-TqnvinG yvkwa ASO_CUCSA : 100- 109: hwhgi LqrgTpwad-G tasis ASO_CUCSA : 384- 393: nrrlf Lln-TqnrinG fmkwa CERU_HUMAN : 159- 168: qytym Lla-TeeqspG egdgn CERU_RAT : 679- 687: hkslt Llm-Tpdte-G sfdve COPA_PSESM : 93- 103: rvrnr LdaaTsihwhG iilpp COPA_PSESM : 289- 298: iripg Lkm-TvvasdG qfvnp COPA_PSESM : 480- 489: ltyad Lks-TfedpdG repsr FA5_HUMAN : 85- 95: stisg LlgpTlyaevG diikv FA5_HUMAN : 86- 95: tisgl Lgp-TlyaevG diikv FA5_HUMAN : 894- 903: kvgrh LsqdTgsps-G mrpwe FA5_HUMAN : 1406- 1416: pltpd LdqmTlspdlG etdls FA8_HUMAN : 313- 323: spitf LtaqTllmdlG qfllf FA8_HUMAN : 1248- 1257: mknlf Lls-TrqnveG sydga FA8_HUMAN : 1464- 1473: knnls LailTlemt-G dqrev FA8_HUMAN : 1524- 1532: iyqkd Lfp-Tetsn-G spghl FA8_MOUSE : 314- 324: spitf LtaqTllidlG qfllf FA8_MOUSE : 1476- 1485: eniif Lkp-TlpeesG kiell FA8_MOUSE : 1501- 1511: qeeei LpteTshgspG hlnlm FA8_MOUSE : 2221- 2229: wlqvd Lqk-Tmkvt-G iitqg FA8_PIG : 564- 573: rnnls LpflTlema-G gqgki FA8_PIG : 564- 574: rnnls LpflTlemagG qgkis FET3_YEAST : 39- 49: pgstm LynfTvdynvG tywyh FET3_YEAST : 501- 510: cfagi LgiiTiaiy-G mmdme LAC1_EMENI : 72- 82: lvinn LpfnTtvhwhG lemre LAC1_EMENI : 97- 105: dgvpg Ltq-Tpiep-G atfty LAC1_EMENI : 231- 240: allsv Leg-ThltekG clqpd LAC1_NEUCR : 91- 99: ryklt Lte-Tdnwi-G pdgvi LAC1_PHLRA : 5- 14: mhtf Lrs-TalvvaG lsara LAC1_PHLRA : 79- 88: tnatm LkttTihwh-G ffqhg LAC1_PHLRA : 79- 88: tnatm Lkt-TtihwhG ffqhg LAC1_PHLRA : 328- 338: lsesn LaplTnaaapG lpevg LAC1_PHLRA : 495- 505: rtslt LrplTlsprtG ptcal LAC2_NEUCR : 91- 99: ryklt Lte-Tdnwl-G pdgvi RUS1_THIFE : 19- 28: evkam LqkdTgkas-G dtvty RUS2_THIFE : 19- 28: qvkam LekdTgkvs-G dtvty RUS3_THIFE : 19- 28: qvkam LqkdTgkas-G dtvty YFE1_YEAST : 113- 123: pgqty LynfTvpeqvG tfwyh YFE1_YEAST : 294- 303: ppelq Lnq-TiqmryG hslpe YFE1_YEAST : 575- 585: egyla LiisTiigvwG lysia I 9: 11.5102 28( 19) L-x(1,3)-T-x(4)-G Occurences: 28(19) ASO_CUCMA : 95- 104: hwhgi LqrgTpwadG tasis ASO_CUCPM : 65- 74: hwhgi LqrgTpwadG tasis ASO_CUCSA : 100- 109: hwhgi LqrgTpwadG tasis CERU_HUMAN : 700- 707: fnvec Lt--TdhytG gmkqk CERU_HUMAN : 993- 1000: gneid Lh--TvhfhG hsfqy CERU_RAT : 679- 687: hkslt Llm-TpdteG sfdve CERU_RAT : 680- 687: ksltl Lm--TpdteG sfdve CERU_RAT : 694- 701: fdvec Lt--TdhytG gmkqk CERU_RAT : 987- 994: gneid Lh--TvhfhG hsfqy COPA_PSESM : 363- 370: ldprp Lv--TmddmG mggmd FA5_HUMAN : 894- 903: kvgrh LsqdTgspsG mrpwe FA8_HUMAN : 1464- 1473: knnls LailTlemtG dqrev FA8_HUMAN : 1524- 1532: iyqkd Lfp-TetsnG spghl FA8_MOUSE : 1501- 1508: qeeei Lp--TetshG spghl FA8_MOUSE : 2221- 2229: wlqvd Lqk-TmkvtG iitqg FA8_PIG : 353- 360: gpspe Ll--TssgsG ksvkg FA8_PIG : 564- 573: rnnls LpflTlemaG gqgki FET3_YEAST : 298- 305: pkvpt Lm--TvlssG dqann FET3_YEAST : 501- 510: cfagi LgiiTiaiyG mmdme LAC1_EMENI : 97- 105: dgvpg Ltq-TpiepG atfty LAC1_NEUCR : 91- 99: ryklt Lte-TdnwiG pdgvi LAC1_PHLRA : 79- 88: tnatm LkttTihwhG ffqhg LAC1_PHLRA : 133- 140: wyhsh Ls--TqycdG lrgpf LAC2_NEUCR : 91- 99: ryklt Lte-TdnwlG pdgvi RUS1_THIFE : 19- 28: evkam LqkdTgkasG dtvty RUS2_THIFE : 19- 28: qvkam LekdTgkvsG dtvty RUS3_THIFE : 19- 28: qvkam LqkdTgkasG dtvty YFE1_YEAST : 375- 382: pkvpt Lt--TlltsG klasd J 10: 11.0102 37( 19) A-x(0,2)-G-x(2,3)-G Occurences: 37(19) ASO_CUCMA : 143- 147: gmqrs A--Gly-G slivd ASO_CUCPM : 113- 117: gmqrs A--Gly-G slivd ASO_CUCSA : 148- 152: gmqrs A--Gly-G slivd CERU_HUMAN : 190- 195: apkdi As-Gli-G pliic CERU_HUMAN : 960- 967: snkmh AinGrmfG nlqgl CERU_RAT : 88- 94: tidkp AwlGfl-G pvika CERU_RAT : 189- 194: apkdi As-Gli-G plilc CERU_RAT : 954- 961: snkmh AinGkmfG nlqgl COPA_PSESM : 15- 21: fvkgl AaaGvl-G glglw COPA_PSESM : 15- 22: fvkgl AaaGvlgG lglwr COPA_PSESM : 16- 21: vkgla Aa-Gvl-G glglw COPA_PSESM : 16- 22: vkgla Aa-GvlgG lglwr COPA_PSESM : 17- 21: kglaa A--Gvl-G glglw COPA_PSESM : 17- 22: kglaa A--GvlgG lglwr COPA_PSESM : 67- 74: rrtam AinGglpG pllrw COPA_PSESM : 119- 124: pglsf A--GiepG gvyvy COPA_PSESM : 422- 429: gmdhg AmsGmdhG amggm FA5_HUMAN : 516- 521: imrdi As-Gli-G lllic FA8_HUMAN : 563- 568: merdl As-Gli-G pllic FA8_HUMAN : 2058- 2063: dfqit As-Gqy-G qwapk FA8_MOUSE : 563- 568: perdl As-Gli-G pllic FA8_MOUSE : 2026- 2031: dfqit As-Ghy-G qwapn FA8_PIG : 232- 237: shfig A--GvplG steed FA8_PIG : 501- 507: eaple Ap-GnftG pgprs FA8_PIG : 572- 576: ltlem A--Ggq-G kisal FA8_PIG : 635- 640: snvsc Ah-Gdl-G qeifl FET3_YEAST : 498- 502: tfscf A--Gil-G iitia LAC1_EMENI : 91- 96: retpe Ad-Gvp-G ltqtp LAC1_NEUCR : 24- 29: vlaap Ap-Gte-G vnllt LAC1_PHLRA : 48- 54: rqavl Ae-GvfpG pliag LAC1_PHLRA : 58- 62: pgpli A--Gnk-G dnfqi LAC1_PHLRA : 411- 415: elslp A--Gal-G gphpf LAC1_PHLRA : 411- 416: elslp A--GalgG phpfh LAC2_NEUCR : 24- 29: vlaap Ap-Gte-G vnllt RUS1_THIFE : 143- 149: qipgh AatGmf-G kiivk RUS1_THIFE : 144- 149: ipgha At-Gmf-G kiivk RUS2_THIFE : 144- 150: qipgh AatGmf-G kivvk RUS2_THIFE : 145- 150: ipgha At-Gmf-G kivvk RUS3_THIFE : 144- 150: qipgh AatGmf-G kiivk RUS3_THIFE : 145- 150: ipgha At-Gmf-G kiivk YFE1_YEAST : 129- 136: tfwyh AhmGaqyG dgmrg K 11: 11.0102 36( 19) A-x(0,2)-G-x(1,2)-G Occurences: 36(19) ASO_CUCMA : 143- 147: gmqrs A--GlyG slivd ASO_CUCPM : 113- 117: gmqrs A--GlyG slivd ASO_CUCSA : 148- 152: gmqrs A--GlyG slivd CERU_HUMAN : 190- 195: apkdi As-GliG pliic CERU_RAT : 88- 94: tidkp AwlGflG pvika CERU_RAT : 189- 194: apkdi As-GliG plilc COPA_PSESM : 15- 21: fvkgl AaaGvlG glglw COPA_PSESM : 16- 21: vkgla Aa-GvlG glglw COPA_PSESM : 17- 21: kglaa A--GvlG glglw FA5_HUMAN : 516- 521: imrdi As-GliG lllic FA8_HUMAN : 563- 568: merdl As-GliG pllic FA8_HUMAN : 2058- 2063: dfqit As-GqyG qwapk FA8_MOUSE : 563- 568: perdl As-GliG pllic FA8_MOUSE : 2026- 2031: dfqit As-GhyG qwapn FA8_PIG : 572- 576: ltlem Ag-Gq-G kisal FA8_PIG : 572- 576: ltlem A--GgqG kisal FA8_PIG : 635- 640: snvsc Ah-GdlG qeifl FET3_YEAST : 498- 502: tfscf A--GilG iitia LAC1_EMENI : 91- 96: retpe Ad-GvpG ltqtp LAC1_NEUCR : 24- 29: vlaap Ap-GteG vnllt LAC1_NEUCR : 194- 199: hshfs AqyGn-G ivgpi LAC1_PHLRA : 58- 62: pgpli A--GnkG dnfqi LAC1_PHLRA : 283- 288: nywir AnpGi-G ittgf LAC1_PHLRA : 411- 415: elslp A--GalG gphpf LAC2_NEUCR : 24- 29: vlaap Ap-GteG vnllt LAC2_NEUCR : 194- 199: hshfs AqyGn-G ivgpi RUS1_THIFE : 106- 109: ikpiv A--Gt-G fspvp RUS1_THIFE : 143- 149: qipgh AatGmfG kiivk RUS1_THIFE : 144- 149: ipgha At-GmfG kiivk RUS2_THIFE : 107- 110: idpiv A--Gt-G fspvp RUS2_THIFE : 144- 150: qipgh AatGmfG kivvk RUS2_THIFE : 145- 150: ipgha At-GmfG kivvk RUS3_THIFE : 107- 110: ikpiv A--Gt-G fspvp RUS3_THIFE : 144- 150: qipgh AatGmfG kiivk RUS3_THIFE : 145- 150: ipgha At-GmfG kiivk YFE1_YEAST : 133- 138: hahmg AqyGd-G mrgaf YFE1_YEAST : 590- 595: glysi AqyGi-G evipn L 12: 11.0102 43( 19) P-x(2,4)-A-x(1,2)-G Occurences: 43(19) ASO_CUCMA : 64- 71: gqfpg Ptir-AnaG dtvvv ASO_CUCMA : 562- 569: kvgri PtkalAc-G gtaks ASO_CUCMA : 562- 570: kvgri PtkalAcgG taksl ASO_CUCPM : 34- 41: gqfpg Ptir-AnaG dsvvv ASO_CUCPM : 532- 539: kvgri PtkalAc-G gtaks ASO_CUCPM : 532- 540: kvgri PtkalAcgG taksl ASO_CUCSA : 69- 76: gefpg Ptir-AnaG divvv ASO_CUCSA : 568- 575: mvgmi PpkalAc-G stalv ASO_CUCSA : 569- 575: vgmip Pkal-Ac-G stalv CERU_HUMAN : 95- 102: lgflg Piik-AetG dkvyv CERU_HUMAN : 186- 192: shida Pkdi-As-G ligpl CERU_HUMAN : 451- 458: lgilg Pviw-AevG dtirv CERU_HUMAN : 810- 817: lgilg Pqlh-AdvG dkvki CERU_HUMAN : 831- 838: nmatr PysihAh-G vqtes CERU_RAT : 95- 102: lgflg Pvik-AevG dkvsv CERU_RAT : 116- 123: nfasr PytfhAh-G vtytk CERU_RAT : 185- 191: shvda Pkdi-As-G ligpl CERU_RAT : 450- 457: lgilg Pviw-AevG diirv CERU_RAT : 804- 811: lgilg Plih-AdvG akvkv CERU_RAT : 825- 832: nmatr PysihAh-G vktks COPA_PSESM : 29- 35: glwrs Pswa-As-G spals COPA_PSESM : 29- 35: glwrs Psw--AasG spals FA5_HUMAN : 88- 95: sgllg Ptly-AevG diikv FA5_HUMAN : 1667- 1674: nlasr PyslhAh-G lsyek FA8_HUMAN : 114- 121: nmash PvslhAv-G vsywk FA8_HUMAN : 909- 916: listi PsdnlAa-G tdnts FA8_HUMAN : 2043- 2049: nkcqt Plgm-As-G hirdf FA8_MOUSE : 115- 122: nmash PvslhAv-G vsywk FA8_MOUSE : 558- 565: ssfin PerdlAs-G ligpl FA8_MOUSE : 1232- 1239: ekvvl PqvheAt-G sknfl FA8_MOUSE : 2011- 2017: kqcqi Plgm-As-G sirdf FA8_PIG : 434- 441: fkvdl PqvytAt-G tknfl FA8_PIG : 498- 503: ireea Ple--Ap-G nftgp FET3_YEAST : 253- 261: dfylq PyekeAiyG epdhv LAC1_EMENI : 383- 388: hrenv Pka--Ai-G phtdt LAC1_NEUCR : 118- 125: dkiig Ptiq-AdwG dyiei LAC1_PHLRA : 330- 338: esnla PltnaAapG lpevg LAC1_PHLRA : 410- 415: ielsl Pag--Al-G gphpf LAC1_PHLRA : 410- 416: ielsl Pag--AlgG phpfh LAC2_NEUCR : 118- 125: dniig Ptiq-AdwG dyiei RUS1_THIFE : 103- 109: mpnik Piv--AgtG fspvp RUS1_THIFE : 140- 146: yvcqi Pgha-At-G mfgki RUS1_THIFE : 140- 146: yvcqi Pgh--AatG mfgki RUS2_THIFE : 104- 110: mpvid Piv--AgtG fspvp RUS2_THIFE : 141- 147: yvcqi Pgha-At-G mfgki RUS2_THIFE : 141- 147: yvcqi Pgh--AatG mfgki RUS3_THIFE : 104- 110: mpnik Piv--AgtG fspvp RUS3_THIFE : 141- 147: yvcqi Pgha-At-G mfgki RUS3_THIFE : 141- 147: yvcqi Pgh--AatG mfgki YFE1_YEAST : 538- 545: kaadi PvvgnAa-G hsndw M 13: 11.0102 50( 19) A-x(0,2)-G-x(3,4)-V Occurences: 50(19) ASO_CUCMA : 68- 75: gptir AnaGdtv-V velin ASO_CUCMA : 68- 76: gptir AnaGdtvvV elink ASO_CUCMA : 70- 75: tiran A--Gdtv-V velin ASO_CUCMA : 70- 76: tiran A--GdtvvV elink ASO_CUCMA : 552- 558: mgvvf Ae-Gvek-V gript ASO_CUCPM : 38- 45: gptir AnaGdsv-V veltn ASO_CUCPM : 38- 46: gptir AnaGdsvvV eltnk ASO_CUCPM : 40- 45: tiran A--Gdsv-V veltn ASO_CUCPM : 40- 46: tiran A--GdsvvV eltnk ASO_CUCPM : 522- 528: mgvvf Ae-Gvek-V gript ASO_CUCSA : 73- 80: gptir AnaGdiv-V veltn ASO_CUCSA : 73- 81: gptir AnaGdivvV eltnk ASO_CUCSA : 75- 80: tiran A--Gdiv-V veltn ASO_CUCSA : 75- 81: tiran A--GdivvV eltnk ASO_CUCSA : 558- 564: mgvvf Ae-Gvhm-V gmipp ASO_CUCSA : 573- 580: ppkal Ac-GstalV knypr CERU_HUMAN : 99- 107: gpiik AetGdkvyV hlknl CERU_HUMAN : 400- 407: kenlt Ap-GsdsaV ffeqg CERU_HUMAN : 455- 463: gpviw AevGdtirV tfhnk CERU_HUMAN : 567- 574: kgslh An-GrqkdV dkefy CERU_HUMAN : 649- 655: wylfs A--GneadV hgiyf CERU_RAT : 88- 96: tidkp AwlGflgpV ikaev CERU_RAT : 99- 107: gpvik AevGdkvsV hvknf CERU_RAT : 454- 462: gpviw AevGdiirV tfhnk CERU_RAT : 561- 568: kgsll Ad-GrqkdV dkefy CERU_RAT : 643- 649: wylfs A--GneadV hgiyf CERU_RAT : 808- 816: gplih AdvGakvkV vfknm COPA_PSESM : 214- 222: fvndv AdkGwaatV adrkm COPA_PSESM : 341- 347: drtgy Ar-Gtla-V reglv FA5_HUMAN : 92- 100: gptly AevGdiikV hfknk FA8_HUMAN : 1885- 1892: ntlnp Ah-GrqvtV qefal FA8_HUMAN : 2012- 2017: mlpsk A--Giwr-V eclig FA8_MOUSE : 1853- 1860: ntlnp Ah-GrqvsV qefal FA8_MOUSE : 1980- 1985: mipsr A--Giwr-V eclig FA8_PIG : 324- 330: dkntt As-Glnh-V snwik FET3_YEAST : 258- 266: pyeke AiyGepdhV itvdv LAC1_EMENI : 355- 362: yairi AvnGadq-V msvya LAC1_NEUCR : 24- 30: vlaap Ap-Gteg-V nlltp LAC1_NEUCR : 194- 201: hshfs AqyGngi-V gpivi LAC1_NEUCR : 262- 268: hpttg A--GqyatV sltkg LAC1_PHLRA : 335- 342: pltna AapGlpe-V ggvdl LAC1_PHLRA : 336- 342: ltnaa Ap-Glpe-V ggvdl LAC2_NEUCR : 24- 30: vlaap Ap-Gteg-V nlltp LAC2_NEUCR : 194- 201: hshfs AqyGngi-V gpivi LAC2_NEUCR : 262- 268: hpttg A--GqyatV sltkg RUS1_THIFE : 67- 73: tldip A--GatvdV tfint RUS1_THIFE : 106- 113: ikpiv AgtGfsp-V pkdgk RUS1_THIFE : 130- 136: twhpt A--GtyyyV cqipg RUS2_THIFE : 68- 74: tleip A--GatvdV tfint RUS2_THIFE : 107- 114: idpiv AgtGfsp-V pkdgk RUS2_THIFE : 131- 137: twhpt A--GtyyyV cqipg RUS3_THIFE : 68- 74: tldip A--GatvdV tfint RUS3_THIFE : 107- 114: ikpiv AgtGfsp-V pkdgk RUS3_THIFE : 131- 137: twhpt A--GtyyyV cqipg YFE1_YEAST : 255- 261: siyls A--GqrmsV likak YFE1_YEAST : 590- 597: glysi AqyGige-V ipnde N 14: 11.0102 50( 19) G-x(3,5)-V-x(3,4)-G Occurences: 50(19) ASO_CUCMA : 147- 156: sagly Gsli--VdppqG kkepf ASO_CUCMA : 262- 273: lnfai GnhpllVveadG nyvqp ASO_CUCMA : 481- 490: pwhlh Ghdfw-Vlgy-G dgkft ASO_CUCMA : 546- 554: phlhm Gmgv--Vfae-G vekvg ASO_CUCPM : 117- 126: sagly Gsli--VdppqG kkepf ASO_CUCPM : 232- 243: lnfai GnhqllVveadG nyvqp ASO_CUCPM : 451- 460: pwhlh Ghdfw-Vlgy-G dgkfs ASO_CUCPM : 516- 524: phlhm Gmgv--Vfae-G vekvg ASO_CUCSA : 152- 161: sagly Gsli--VdppeG rsepf ASO_CUCSA : 267- 278: lnfai GnhellVveadG nyvqp ASO_CUCSA : 486- 495: pwhlh Ghdfw-Vlgy-G egkfy ASO_CUCSA : 552- 560: phlhm Gmgv--Vfae-G vhmvg CERU_HUMAN : 402- 412: nltap Gsdsa-VffeqG ttrig CERU_RAT : 401- 411: nltsl Gsdsr-VffeqG atrig CERU_RAT : 714- 724: vnqck Gqfed-VtlyqG ertyy COPA_PSESM : 13- 24: rtfvk GlaaagVlgglG lwrsp COPA_PSESM : 52- 60: fdlsi Gemp--Vnit-G rrrta COPA_PSESM : 146- 155: yhshs Gfqeq-Vgvy-G plvie COPA_PSESM : 207- 217: hkrtv GdfvndVadk-G waatv COPA_PSESM : 288- 298: dirip GlkmtvVasd-G qfvnp COPA_PSESM : 288- 298: dirip Glkmt-VvasdG qfvnp FA5_HUMAN : 4- 15: mfp GcprlwVlvvlG tswvg FA5_HUMAN : 1835- 1846: llnig GsqdihVvhfhG qtlle FA5_HUMAN : 2009- 2020: wqifk GnstrnVmyfnG nsdas FA8_HUMAN : 193- 201: nsgli Gall--Vcre-G slake FA8_HUMAN : 1473- 1482: tlemt Gdqre-Vgsl-G tsatn FA8_HUMAN : 2013- 2022: lpska Giwr--VecliG ehlha FA8_MOUSE : 194- 202: nsgli Gall--Vcke-G slske FA8_MOUSE : 1981- 1990: ipsra Giwr--VecliG ehlqa FA8_PIG : 248- 258: hessl GenvspVesd-G ifeke FA8_PIG : 592- 603: gplas GklekaVlssaG lseas FET3_YEAST : 421- 432: whllq GlglvlVedpfG iqdah FET3_YEAST : 423- 432: llqgl Glvl--VedpfG iqdah LAC1_EMENI : 39- 49: gspng GtaremVftn-G eypgp LAC1_EMENI : 207- 215: sllin Grgs--Vycp-G yqyle LAC1_NEUCR : 263- 273: pttga Gqyat-VsltkG kkhrl LAC1_NEUCR : 335- 345: anqav GnywfnVtfg-G sklcg LAC1_PHLRA : 40- 50: avspd GfsrqaVlae-G vfpgp LAC1_PHLRA : 424- 434: pfhlh GhtfsvVrpa-G sttyn LAC1_PHLRA : 424- 434: pfhlh Ghtfs-VvrpaG sttyn LAC2_NEUCR : 263- 273: pttga Gqyat-VsltkG kkhrl LAC2_NEUCR : 335- 345: anqav GnywfnVtfg-G ndlcg RUS1_THIFE : 107- 117: kpiva GtgfspVpkd-G kfgys RUS1_THIFE : 109- 117: ivagt Gfsp--Vpkd-G kfgys RUS1_THIFE : 131- 141: whpta Gtyyy-VcqipG haatg RUS2_THIFE : 108- 118: dpiva GtgfspVpkd-G kfgyt RUS2_THIFE : 110- 118: ivagt Gfsp--Vpkd-G kfgyt RUS2_THIFE : 132- 142: whpta Gtyyy-VcqipG haatg RUS3_THIFE : 108- 118: kpiva GtgfspVpkd-G kfgys RUS3_THIFE : 110- 118: ivagt Gfsp--Vpkd-G kfgys RUS3_THIFE : 132- 142: whpta Gtyyy-VcqipG haatg YFE1_YEAST : 424- 435: pfhlh GhnfqiVqkspG fhvde O 15: 11.0102 50( 19) A-x(0,1)-G-x(3,5)-S Occurences: 50(19) ASO_CUCMA : 23- 31: fglil AfGissegS qirhy ASO_CUCMA : 102- 109: rgtpw AdGtasi-S qcain ASO_CUCMA : 143- 148: gmqrs A-Glyg--S livdp ASO_CUCMA : 567- 574: ptkal AcGgtak-S linnp ASO_CUCPM : 72- 79: rgtpw AdGtasi-S qcain ASO_CUCPM : 113- 118: gmqrs A-Glyg--S livdp ASO_CUCPM : 537- 544: ptkal AcGgtak-S linnp ASO_CUCSA : 107- 114: rgtpw AdGtasi-S qcain ASO_CUCSA : 148- 153: gmqrs A-Glyg--S livdp CERU_HUMAN : 836- 843: pysih AhGvqte-S stvtp CERU_HUMAN : 836- 844: pysih AhGvqtesS tvtpt CERU_HUMAN : 867- 872: persg A-Gted--S acipw CERU_RAT : 830- 837: pysih AhGvktk-S stvap CERU_RAT : 830- 838: pysih AhGvktksS tvapt CERU_RAT : 861- 866: persg A-Gted--S pcipw COPA_PSESM : 33- 40: spswa AsGspal-S vlsgt COPA_PSESM : 430- 438: gmdhg AmGgmvmqS hpase FA5_HUMAN : 38- 44: qfyva AqGisw--S yrpep FA5_HUMAN : 854- 859: llslg A-Gefk--S qehak FA5_HUMAN : 1225- 1232: rnlsp AlGqmpi-S pdlsh FA5_HUMAN : 1270- 1277: tnlsp AlGqmpl-S pdlsh FA5_HUMAN : 1315- 1322: tnlsp AlGqmpi-S pdlsh FA5_HUMAN : 1351- 1358: tnlsp AlGqmpl-S pdpsh FA5_HUMAN : 1672- 1680: pyslh AhGlsyekS segkt FA8_HUMAN : 914- 921: psdnl AaGtdnt-S slgpp FA8_HUMAN : 914- 922: psdnl AaGtdntsS lgpps FA8_HUMAN : 915- 921: sdnla A-Gtdnt-S slgpp FA8_HUMAN : 915- 922: sdnla A-GtdntsS lgpps FA8_MOUSE : 942- 949: klstt AfGkkay-S lvgsh FA8_MOUSE : 1325- 1332: qrskr AlGqfrl-S tqwlk FA8_MOUSE : 1853- 1859: ntlnp AhGrqv--S vqefa FA8_PIG : 232- 238: shfig A-Gvplg-S teedh FA8_PIG : 324- 331: dkntt AsGlnhv-S nwikg FA8_PIG : 572- 579: ltlem AgGqgki-S algks FA8_PIG : 572- 579: ltlem A-GgqgkiS algks FA8_PIG : 585- 591: algks AaGpla--S gklek FA8_PIG : 586- 591: lgksa A-Gpla--S gklek FA8_PIG : 602- 608: avlss A-Glsea-S gkaef FA8_PIG : 836- 844: vfrer AdGsftnpS yrgel FET3_YEAST : 362- 369: rtydd AlGevph-S fdpdn LAC1_EMENI : 117- 124: frayp A-GtfwyhS hykgl LAC1_NEUCR : 241- 246: lltqh A-Gppp--S nnvlf LAC1_NEUCR : 262- 269: hpttg A-GqyatvS ltkgk LAC1_PHLRA : 124- 131: qvpdq A-GtfwyhS hlstq LAC1_PHLRA : 200- 205: grcge A-Gcpv--S dlavi LAC1_PHLRA : 262- 267: eltiy A-Gqry--S filta LAC1_PHLRA : 294- 299: ittgf A-Ggin--S ailry LAC2_NEUCR : 241- 246: lltqh A-Gppp--S nnvlf LAC2_NEUCR : 262- 269: hpttg A-GqyatvS ltkgk RUS1_THIFE : 26- 34: kdtgk AsGdtvtyS gkvhv RUS1_THIFE : 106- 111: ikpiv A-Gtgf--S pvpkd RUS2_THIFE : 107- 112: idpiv A-Gtgf--S pvpkd RUS3_THIFE : 26- 34: kdtgk AsGdtvtyS gktvh RUS3_THIFE : 107- 112: ikpiv A-Gtgf--S pvpkd YFE1_YEAST : 255- 260: siyls A-Gqrm--S vlika P 16: 11.0102 29( 19) V-x(0,1)-G-x(1,3)-S Occurences: 29(19) ASO_CUCMA : 184- 187: ihkqe V-Gl--S skpir ASO_CUCMA : 184- 188: ihkqe V-Gls-S kpirw ASO_CUCPM : 154- 157: ihkqe V-Gl--S skpir ASO_CUCPM : 154- 158: ihkqe V-Gls-S kpirw ASO_CUCSA : 189- 192: vhkqe V-Gl--S skpmr ASO_CUCSA : 189- 193: vhkqe V-Gls-S kpmrw CERU_HUMAN : 655- 661: gnead VhGiyfS gntyl CERU_RAT : 101- 106: vikae V-GdkvS vhvkn CERU_RAT : 649- 655: gnead VhGiyfS gntyl COPA_PSESM : 113- 117: pnmdg VpGl--S fagie FA5_HUMAN : 13- 17: lwvlv VlGt--S wvgwg FA5_HUMAN : 19- 23: lgtsw V-Gwg-S qgtea FA5_HUMAN : 773- 778: ntdii V-GsnyS spsni FA5_HUMAN : 890- 895: llahk V-GrhlS qdtgs FA5_HUMAN : 1513- 1516: nplvi V-Gl--S kdgtd FA5_HUMAN : 2063- 2067: lqgce VnGc--S tplgm FA8_HUMAN : 120- 123: vslha V-Gv--S ywkas FA8_MOUSE : 121- 124: vslha V-Gv--S ywkas FA8_MOUSE : 708- 714: npglw VlGchnS dfrkr FA8_PIG : 4- 10: glw VlGchmS dlrnr FA8_PIG : 221- 226: qlgai VlGkn-S shfig FA8_PIG : 221- 227: qlgai VlGknsS hfiga FA8_PIG : 363- 367: gsgks VkGq--S sgqgr FA8_PIG : 363- 368: gsgks VkGqs-S gqgri FET3_YEAST : 144- 149: lrivn VgGfv-S qyfwi FET3_YEAST : 144- 149: lrivn V-GgfvS qyfwi LAC1_EMENI : 329- 333: revem V-Gvy-S garya LAC1_NEUCR : 555- 560: hiawh VsGgl-S nqfle LAC1_PHLRA : 12- 16: stalv VaGl--S arala LAC2_NEUCR : 555- 560: hiawh VsGgl-S nqfle RUS1_THIFE : 105- 111: nikpi VaGtgfS pvpkd RUS2_THIFE : 106- 112: vidpi VaGtgfS pvpkd RUS3_THIFE : 106- 112: nikpi VaGtgfS pvpkd YFE1_YEAST : 218- 223: frfln V-GlfvS qyiil YFE1_YEAST : 583- 588: stiig VwGly-S iaqyg Q 17: 11.0102 34( 19) I-x(3,4)-G-x(1,3)-V Occurences: 34(19) ASO_CUCMA : 66- 74: fpgpt IranaGdt-V vveli ASO_CUCMA : 66- 75: fpgpt IranaGdtvV velin ASO_CUCPM : 36- 44: fpgpt IranaGds-V vvelt ASO_CUCPM : 36- 45: fpgpt IranaGdsvV veltn ASO_CUCSA : 71- 79: fpgpt IranaGdi-V vvelt ASO_CUCSA : 71- 80: fpgpt IranaGdivV veltn CERU_HUMAN : 97- 105: flgpi IkaetGdk-V yvhlk CERU_RAT : 97- 105: flgpv IkaevGdk-V svhvk CERU_RAT : 806- 814: ilgpl IhadvGak-V kvvfk CERU_RAT : 884- 893: rvkdl IsgliGpliV crksy COPA_PSESM : 121- 128: lsfag Iepg-Gvy-V yqfkv COPA_PSESM : 523- 530: daqpl Ilky-Ger-V rivlv FA5_HUMAN : 269- 275: pelfs Ihfn-Gq--V leqnh FA8_HUMAN : 494- 502: srpyn Iyph-GitdV rplys FA8_HUMAN : 1975- 1981: enihs Ihfs-Gh--V ftvrk FA8_MOUSE : 494- 502: srpyn Iyph-GitdV splha FA8_MOUSE : 845- 854: hspna IdsneGpskV tqlrp FA8_MOUSE : 1943- 1949: eniqs Ihfs-Gh--V ftvrk FA8_MOUSE : 1976- 1985: etlem IpsraGiwrV eclig FA8_MOUSE : 2261- 2267: hhwtq Ilyn-Gk--V kvfqg FA8_MOUSE : 2261- 2269: hhwtq Ilyn-GkvkV fqgnq FA8_PIG : 532- 539: lplee IkperGv--V lnats FET3_YEAST : 141- 148: tyllr IvnvgGf--V sqyfw FET3_YEAST : 141- 148: tyllr Ivnv-Ggf-V sqyfw LAC1_EMENI : 189- 197: aeyhn IevesGyn-V fcvds LAC1_EMENI : 205- 211: vdsll Ingr-Gs--V ycpgy LAC1_EMENI : 354- 362: dyair Iavn-GadqV msvya LAC1_NEUCR : 167- 175: vtecp IpprgGsk-V yrwra LAC1_NEUCR : 167- 175: vtecp Ippr-GgskV yrwra LAC1_NEUCR : 412- 418: gntip Itld-Gf--V wrvng LAC1_PHLRA : 301- 309: ginsa IlrydGad-V veptt LAC1_PHLRA : 301- 310: ginsa IlrydGadvV epttt LAC1_PHLRA : 451- 458: rdvvs Ignt-Gdn-V tirfd LAC2_NEUCR : 167- 175: vtecp IpprgGsk-V yrwra LAC2_NEUCR : 167- 175: vtecp Ippr-GgskV yrwra LAC2_NEUCR : 412- 418: gntip Itld-Gf--V wrvng RUS1_THIFE : 104- 113: pnikp IvagtGfspV pkdgk RUS2_THIFE : 105- 114: pvidp IvagtGfspV pkdgk RUS3_THIFE : 105- 114: pnikp IvagtGfspV pkdgk YFE1_YEAST : 54- 62: wplpd IhvekGdr-V elylt YFE1_YEAST : 235- 243: dhems IvevdGvy-V kpnft YFE1_YEAST : 589- 597: wglys Iaqy-GigeV ipnde R 18: 11.0102 46( 19) P-x(0,2)-I-x(2,3)-G Occurences: 46(19) ASO_CUCMA : 190- 195: glssk P--IrwiG epqti ASO_CUCMA : 197- 204: rwige PqtIllnG rgqfd ASO_CUCPM : 160- 165: glssk P--IrwiG epqti ASO_CUCPM : 167- 174: rwige PqtIllnG rgqfd ASO_CUCSA : 202- 209: rwige PqsIlinG kgqfd CERU_HUMAN : 186- 192: shida PkdIas-G ligpl CERU_HUMAN : 472- 479: nkgay PlsIepiG vrfnk CERU_HUMAN : 556- 563: tglig PmkIckkG slhan CERU_HUMAN : 831- 838: nmatr PysIhahG vqtes CERU_RAT : 185- 191: shvda PkdIas-G ligpl CERU_RAT : 471- 478: nkgqf PlsIqpmG vrftk CERU_RAT : 550- 557: tglig PmkIckkG sllad CERU_RAT : 825- 832: nmatr PysIhahG vktks COPA_PSESM : 521- 527: fadaq Pl-IlkyG ervri COPA_PSESM : 543- 548: tmmth P--IhlhG mwsdl FA5_HUMAN : 109- 116: nkadk PlsIhpqG irysk FA5_HUMAN : 189- 196: sglig PllIckkG tlteg FA5_HUMAN : 442- 449: nmasr PysIyphG vtfsp FA5_HUMAN : 594- 601: ingyv PesIttlG fcfdd FA5_HUMAN : 1747- 1754: sglig PllIcqkG ilhkd FA8_HUMAN : 491- 498: nqasr PynIyphG itdvr FA8_HUMAN : 521- 525: hlkdf P--Ilp-G eifky FA8_HUMAN : 2097- 2102: vdlla Pm-Iih-G iktqg FA8_MOUSE : 491- 498: nqasr PynIyphG itdvs FA8_MOUSE : 521- 525: hvkdl P--Ihp-G eifky FA8_MOUSE : 2065- 2070: vdlla Pm-Ivh-G iktqg FA8_PIG : 552- 556: wsess P--Ilq-G akrnn FET3_YEAST : 31- 35: fltqc P--Iap-G stmly LAC1_EMENI : 101- 105: gltqt P--Iep-G atfty LAC1_EMENI : 507- 514: dlihp PhpIhkhG nrayi LAC1_EMENI : 509- 514: ihpph P--IhkhG nrayi LAC1_NEUCR : 166- 171: gvtec P--IpprG gskvy LAC1_NEUCR : 203- 208: ngivg P--IvinG pasan LAC1_NEUCR : 411- 416: tgnti P--ItldG fvwrv LAC1_NEUCR : 476- 483: gafsl PhpIhlhG hdfli LAC1_NEUCR : 478- 483: fslph P--IhlhG hdfli LAC1_PHLRA : 107- 111: finqc P--Ias-G dsfly LAC2_NEUCR : 166- 171: gvtec P--IpprG gskvy LAC2_NEUCR : 203- 208: ngivg P--IvinG pasan LAC2_NEUCR : 411- 416: tgnti P--ItldG fvwrv LAC2_NEUCR : 476- 483: gafsl PhpIhlhG hdfli LAC2_NEUCR : 478- 483: fslph P--IhlhG hdfli RUS1_THIFE : 103- 107: mpnik P--Iva-G tgfsp RUS2_THIFE : 104- 108: mpvid P--Iva-G tgfsp RUS3_THIFE : 104- 108: mpnik P--Iva-G tgfsp YFE1_YEAST : 105- 109: mvtqc P--Ivp-G qtyly S 19: 11.0102 47( 19) P-x(3,4)-T-x(3,5)-P Occurences: 47(19) ASO_CUCMA : 320- 330: rhpnt Ppgl-TllnylP nsvsk ASO_CUCMA : 507- 517: lnlkn PplrnTvvif-P ygwta ASO_CUCMA : 508- 517: nlknp Plrn-Tvvif-P ygwta ASO_CUCPM : 290- 300: rhpnt Ppgl-TllnylP nsvsk ASO_CUCPM : 477- 487: lnlkn PplrnTvvif-P ygwta ASO_CUCPM : 478- 487: nlknp Plrn-Tvvif-P ygwta ASO_CUCSA : 325- 335: rlpkt Ppgl-TllnylP nsask ASO_CUCSA : 513- 523: lnlkn PplrnTvvif-P ygwta ASO_CUCSA : 514- 523: nlknp Plrn-Tvvif-P ygwta CERU_HUMAN : 511- 522: ashva PtetfTyewtvP kevgp CERU_HUMAN : 679- 689: tanlf PqtslTlhmw-P dtegt CERU_HUMAN : 851- 862: vtptl PgetlTyvwkiP ersga CERU_HUMAN : 1020- 1030: vfdif PgtyqTlemf-P rtpgi CERU_RAT : 505- 516: ashva PketfTyewtvP kemgp CERU_RAT : 673- 683: tanlf PhkslTllmt-P dtegs CERU_RAT : 845- 856: vaptl PgevrTyiwqiP ersga CERU_RAT : 1014- 1024: vfdff PgtyqTlemf-P qtpgt COPA_PSESM : 255- 265: lngqa PnmnwTglfr-P geklr FA5_HUMAN : 1197- 1206: qvtls PelsqTnls--P dlsht FA5_HUMAN : 1206- 1215: qtnls PdlshTtls--P eliqr FA5_HUMAN : 1233- 1242: qmpis PdlshTtls--P dlsht FA5_HUMAN : 1260- 1269: qtnls PelsqTnls--P algqm FA5_HUMAN : 1305- 1314: hmtls PelsqTnls--P algqm FA5_HUMAN : 1341- 1350: qtnls PelsqTnls--P algqm FA5_HUMAN : 1377- 1386: qtnls PelsqTnls--P dlsem FA5_HUMAN : 1413- 1422: qmtls PdlgeTdls--P nfgqm FA5_HUMAN : 1440- 1449: qvtls PdisdTtll--P dlsqi FA8_HUMAN : 496- 504: pyniy Phgi-Tdvr--P lysrr FA8_HUMAN : 1999- 2009: lynly PgvfeTveml-P skagi FA8_MOUSE : 496- 504: pyniy Phgi-Tdvs--P lharr FA8_MOUSE : 615- 625: mqrfl PnaakTqpqd-P gfqas FA8_MOUSE : 851- 859: dsneg Pskv-Tqlr--P eshhs FA8_MOUSE : 1967- 1977: vynly PgvfeTlemi-P sragi FA8_PIG : 502- 510: aplea Pgnf-Tgpg--P rsavp FET3_YEAST : 382- 392: afpey PmrrdTlyvr-P qsnfv LAC1_EMENI : 95- 104: eadgv PgltqTpie--P gatft LAC1_NEUCR : 367- 378: ryqga PkalpTnqgvaP vdhqc LAC1_NEUCR : 519- 528: lngnn PtrrdTaml--P akgwl LAC1_PHLRA : 400- 410: svyal Psna-TielslP agalg LAC1_PHLRA : 432- 443: fsvvr PagstTynyvnP vqrdv LAC2_NEUCR : 367- 378: ryqga PkalpTnkgvaP pdhqc LAC2_NEUCR : 519- 528: lngnn PtrrdTaml--P akgwl RUS1_THIFE : 103- 112: mpnik PivagTgfs--P vpkdg RUS1_THIFE : 103- 114: mpnik PivagTgfspvP kdgkf RUS2_THIFE : 104- 113: mpvid PivagTgfs--P vpkdg RUS2_THIFE : 104- 115: mpvid PivagTgfspvP kdgkf RUS3_THIFE : 104- 113: mpnik PivagTgfs--P vpkdg RUS3_THIFE : 104- 115: mpnik PivagTgfspvP kdgkf YFE1_YEAST : 98- 108: lqmdg Psmv-TqcpivP gqtyl YFE1_YEAST : 467- 477: pfper PmvrdTvvle-P sghvv T 20: 11.0102 28( 19) G-x(0,1)-P-x(2,4)-V Occurences: 28(19) ASO_CUCMA : 365- 371: itaam GsPkpp-V ksnrr ASO_CUCPM : 335- 341: itaam GsPkpp-V kfnrr ASO_CUCSA : 370- 376: ifaam GsPkpp-V rynrr CERU_HUMAN : 895- 899: ysgli G-Pli--V crrpy CERU_RAT : 889- 893: isgli G-Pli--V crksy COPA_PSESM : 35- 41: swaas GsPals-V lsgte FA5_HUMAN : 4- 10: mfp GcPrlw-V lvvlg FA5_HUMAN : 997- 1004: pgkqs GhPkfprV rhksl FA8_HUMAN : 924- 930: ntssl GpPsmp-V hydsq FA8_HUMAN : 924- 930: ntssl G-PpsmpV hydsq FA8_HUMAN : 1152- 1157: qlvsl G-Peks-V egqnf FA8_HUMAN : 1872- 1876: hsgli G-Pll--V chtnt FA8_MOUSE : 850- 854: idsne G-Psk--V tqlrp FA8_MOUSE : 926- 932: ktdss GfPdmp-V hsssk FA8_PIG : 205- 211: rthsl GpPhpq-V nfrsq FA8_PIG : 205- 211: rthsl G-PphpqV nfrsq FA8_PIG : 509- 514: nftgp G-Prsa-V prrvk FA8_PIG : 733- 739: gpgrl GaPkpp-V lrrhq FET3_YEAST : 261- 266: keaiy GePdh--V itvdv LAC1_EMENI : 388- 394: pkaai G-PhtdtV gymny LAC1_NEUCR : 99- 103: tdnwi G-Pdg--V ikdkv LAC1_NEUCR : 242- 249: ltqha GpPpsnnV lfngf LAC1_PHLRA : 143- 147: cdglr G-Pfv--V ydpad LAC1_PHLRA : 338- 345: naaap GlPevggV dlaln LAC2_NEUCR : 99- 103: tdnwl G-Pdg--V ikdkv LAC2_NEUCR : 242- 249: ltqha GpPpsnnV lfngf RUS1_THIFE : 92- 97: ditkk GpPfa--V mpnik RUS1_THIFE : 92- 97: ditkk G-Ppfa-V mpnik RUS2_THIFE : 93- 98: ditkk GpPya--V mpvid RUS2_THIFE : 93- 98: ditkk G-Ppya-V mpvid RUS3_THIFE : 93- 98: ditkk GpPfa--V mpnik RUS3_THIFE : 93- 98: ditkk G-Ppfa-V mpnik YFE1_YEAST : 97- 101: qlqmd G-Psm--V tqcpi Number of patterns evaluated by Pratt:2302 Total running time: 9 seconds