------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 8 sequences from file MR_MLE_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 8 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename MR_MLE_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CATB_PSEPU 374 CLCB_PSEPU 370 MANR_PSEPU 359 RSPA_ECOLI 404 TCBD_PSESP 370 TFDD_ALCEU 370 YIDU_ECOLI 587 YIN2_STRAM 402 Pratt run started at Thu Feb 6 20:20:37 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 15.6802 8( 8) P-x(3,4)-L-x(1,2)-G-x(3)-R 2: 15.6802 13( 8) A-x(1,2)-D-x-A-x(1,2)-D 3: 15.1802 10( 8) A-x(2,4)-L-x(0,1)-G-x(2)-A 4: 15.1802 9( 8) L-x(3,5)-L-x(0,1)-G-x(2)-A 5: 15.1802 14( 8) A-x(0,2)-A-x(2,3)-A-L 6: 15.1802 15( 8) A-x(2,4)-D-x-A-x(1,2)-D 7: 15.1802 15( 8) A-x(1,3)-D-x-A-x(1,2)-D 8: 15.1802 12( 8) A-x(1,3)-A-x(2)-D-x(1,2)-A 9: 15.1802 12( 8) A-x(1,3)-A-x(1,2)-D-x-A 10: 15.1802 10( 8) A-x(4)-A-x(0,1)-L-x(2,4)-L 11: 14.6802 8( 8) A-x(0,2)-P-x(1,3)-L-x-G 12: 14.6802 12( 8) G-x(0,2)-G-x(4)-S-x(2,4)-A 13: 14.6802 9( 8) A-x(0,2)-I-x-A-x(2,4)-L 14: 14.6802 10( 8) G-x(3)-L-x(0,2)-D-x(0,2)-L 15: 14.6802 13( 8) A-x(2,4)-A-x(2,4)-L-x(3)-A 16: 14.6802 12( 8) A-x(0,2)-A-x(0,2)-D-x-A 17: 14.6802 11( 8) V-x(3,5)-A-x(2,4)-A-x(4)-L 18: 14.6802 11( 8) G-x(3)-L-x(1,3)-D-x(0,2)-L 19: 12.5102 13( 8) A-x(3)-A-x(2)-D 20: 12.0102 10( 8) P-x(0,1)-G-x-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 20.9042 8( 8) P-x(3,4)-L-x(1,2)-G-[ADG]-x(2)-R-[DEP] B 2: 19.5077 8( 8) G-x(2)-[GIPV]-L-x(1,3)-D-x(0,2)-L-x(4)-[AGL] C 3: 17.9199 8( 8) V-x(3,5)-A-x(2,4)-A-x(4)-L-x-[DG] D 4: 17.4209 13( 8) A-x(0,2)-A-x(2,3)-A-L-x(2)-[GILV] E 5: 17.3428 11( 8) G-x(0,2)-G-x(4)-S-x(2,4)-A-x-[AQT] F 6: 17.0959 8( 8) L-x(3,5)-L-x(0,1)-G-x(2)-A-x(2)-[AILPV] G 7: 16.5994 10( 8) G-x(2)-[AGIPV]-L-x(0,2)-D-x(0,2)-L H 8: 15.6802 13( 8) A-x(1,2)-D-x-A-x(1,2)-D I 9: 15.1802 10( 8) A-x(2,4)-L-x(0,1)-G-x(2)-A J 10: 15.1802 15( 8) A-x(2,4)-D-x-A-x(1,2)-D K 11: 15.1802 15( 8) A-x(1,3)-D-x-A-x(1,2)-D L 12: 15.1802 12( 8) A-x(1,3)-A-x(2)-D-x(1,2)-A M 13: 15.1802 12( 8) A-x(1,3)-A-x(1,2)-D-x-A N 14: 15.1802 10( 8) A-x(4)-A-x(0,1)-L-x(2,4)-L O 15: 14.6802 8( 8) A-x(0,2)-P-x(1,3)-L-x-G P 16: 14.6802 9( 8) A-x(0,2)-I-x-A-x(2,4)-L Q 17: 14.6802 10( 8) G-x(3)-L-x(0,2)-D-x(0,2)-L R 18: 14.6802 13( 8) A-x(2,4)-A-x(2,4)-L-x(3)-A S 19: 14.6802 12( 8) A-x(0,2)-A-x(0,2)-D-x-A T 20: 14.6802 11( 8) V-x(3,5)-A-x(2,4)-A-x(4)-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 20.9042 8( 8) P-x(3,4)-L-x(1,2)-G-[ADG]-x(2)-R-[DEP] Occurences: 8(8) CATB_PSEPU : 124- 135: krlgl Pvse-Ll-GGrvRD sleva CLCB_PSEPU : 133- 146: iqqgi PiawtLasGDtqRD iaiae MANR_PSEPU : 122- 133: kvhet Plvk-Ll-GAnaRP vqayd RSPA_ECOLI : 104- 115: kaanm Plyq-Ll-GGasRE gvmvy TCBD_PSESP : 133- 146: mrtsi PiawtLasGDtaRD idsal TFDD_ALCEU : 133- 146: lrsai PiawtLasGDtkRD ldsav YIDU_ECOLI : 306- 317: kvlna Pvwq-Lm-GGlvRD kikay YIN2_STRAM : 105- 116: ktagl Pvhq-Ll-GGrsRD gvlvy B 2: 19.5077 8( 8) G-x(2)-[GIPV]-L-x(1,3)-D-x(0,2)-L-x(4)-[AGL] Occurences: 8(8) CATB_PSEPU : 172- 185: fklki GanPLaq-D--LkhvvA ikrel CLCB_PSEPU : 326- 339: ecell GpwVLa--Dt-LtqtqL eikdf MANR_PSEPU : 30- 44: avgtv GtaPLvliD--LatsaG vvghs RSPA_ECOLI : 27- 41: itted GitGLg--DatLngreL svasy TCBD_PSESP : 326- 339: gceli GpwVLg--Dr-LtqqdL eikdf TFDD_ALCEU : 326- 339: gceli GpfVLa--Dt-LshepL eirdy YIDU_ECOLI : 456- 469: vleag GisILqp-D--LshagG itecy YIN2_STRAM : 28- 42: itttd GvtGLg--DatLngreL avasy C 3: 17.9199 8( 8) V-x(3,5)-A-x(2,4)-A-x(4)-L-x-[DG] Occurences: 8(8) CATB_PSEPU : 284- 300: ggpra Vlrt--AqiaeAagiaLyG gtmle CLCB_PSEPU : 94- 110: lmera VtgnysAka--AidvaLhD lkars MANR_PSEPU : 81- 95: eplap Vsle--Aml--AkrfcLaG ytgli RSPA_ECOLI : 81- 95: wrrgp Vtms--Ais--AvdmaLwD ikaka TCBD_PSESP : 94- 110: lmdra VtgnlsAka--AidiaLhD lkara TFDD_ALCEU : 94- 110: tmara VtgnasAka--AvemaLlD lkara TFDD_ALCEU : 94- 110: tmara Vtgn--AsakaAvemaLlD lkara YIDU_ECOLI : 238- 255: gwgep Viegr-ArtveAavheLgD yligq YIN2_STRAM : 82- 96: wrrgp Vtmt--Aia--AvdtaLwD ilgkt D 4: 17.4209 13( 8) A-x(0,2)-A-x(2,3)-A-L-x(2)-[GILV] Occurences: 13(8) CATB_PSEPU : 291- 301: rtaqi AeaAgi-ALygG tmleg CATB_PSEPU : 291- 301: rtaqi Ae-AagiALygG tmleg CATB_PSEPU : 293- 301: aqiae A--Agi-ALygG tmleg CLCB_PSEPU : 100- 111: tgnys AkaAidvALhdL karsl CLCB_PSEPU : 102- 111: nysak A--AidvALhdL karsl MANR_PSEPU : 110- 118: agidm A--Awd-ALgkV hetpl RSPA_ECOLI : 85- 96: pvtms AisAvdmALwdI kakaa TCBD_PSESP : 100- 111: tgnls AkaAidiALhdL karal TCBD_PSESP : 102- 111: nlsak A--AidiALhdL karal TFDD_ALCEU : 100- 111: tgnas AkaAvemALldL karal TFDD_ALCEU : 102- 111: nasak A--AvemALldL karal YIDU_ECOLI : 111- 121: pgcat AteAft-ALeaG aagae YIN2_STRAM : 86- 97: pvtmt AiaAvdtALwdI lgkta YIN2_STRAM : 88- 97: tmtai A--AvdtALwdI lgkta E 5: 17.3428 11( 8) G-x(0,2)-G-x(4)-S-x(2,4)-A-x-[AQT] Occurences: 11(8) CATB_PSEPU : 130- 142: vsell G--GrvrdSlev-AwT lasgd CLCB_PSEPU : 51- 62: egssv G--GptwsSec--AeT ikvii CLCB_PSEPU : 295- 308: giasy G--GtmldSsigtAaA lhvya MANR_PSEPU : 276- 289: amkig GvtGwiraSal--AqQ fgipm RSPA_ECOLI : 312- 327: yqvrt GshGpsdlSpvcmAaA lhfdl TCBD_PSESP : 51- 62: eggsv G--GptwgSes--AeT ikvii TCBD_PSESP : 125- 137: iadli G--GtmrtSipi-AwT lasgd TCBD_PSESP : 295- 308: gissy G--GtmldStvgtAaA lhvya TFDD_ALCEU : 48- 62: gvgeg GsvGgpvwSaec-AeT ikiiv YIDU_ECOLI : 169- 184: qwida GcaGaglgSdlyrAgQ svert YIN2_STRAM : 310- 325: hqvrt GshGatdlSpvsmAaA vhldi F 6: 17.0959 8( 8) L-x(3,5)-L-x(0,1)-G-x(2)-A-x(2)-[AILPV] Occurences: 8(8) CATB_PSEPU : 76- 88: nidah Lapa--LvGlpAdnI naaml CLCB_PSEPU : 71- 83: iiety Lapl--LiGkdAtnL relqh MANR_PSEPU : 123- 134: vhetp Lvkl--L-GanArpV qayds RSPA_ECOLI : 51- 63: ylqdh Lcpq--LiGrdAhrI ediwq TCBD_PSESP : 71- 83: iidny Lapl--LvGkdAsnL sqarv TFDD_ALCEU : 71- 83: ivery Laphl-L-GtdAfnV sgalq TFDD_ALCEU : 71- 83: ivery Laph--LlGtdAfnV sgalq YIDU_ECOLI : 487- 500: aydvt LaphcpL-GpiAlaA clhid YIN2_STRAM : 94- 105: avdta Lwdi--L-GktAglP vhqll G 7: 16.5994 10( 8) G-x(2)-[AGIPV]-L-x(0,2)-D-x(0,2)-L Occurences: 10(8) CATB_PSEPU : 172- 180: fklki GanPLaqD--L khvva CLCB_PSEPU : 239- 248: lsadn GvaILa-DesL sslas CLCB_PSEPU : 326- 334: ecell GpwVLa-Dt-L tqtql MANR_PSEPU : 168- 176: vktki GypALdqD--L avvrs MANR_PSEPU : 168- 176: vktki GypAL--DqdL avvrs RSPA_ECOLI : 27- 36: itted GitGLg-DatL ngrel TCBD_PSESP : 239- 248: lteqn GvaILa-DesL sslss TCBD_PSESP : 326- 334: gceli GpwVLg-Dr-L tqqdl TFDD_ALCEU : 326- 334: gceli GpfVLa-Dt-L shepl YIDU_ECOLI : 456- 464: vleag GisILqpD--L shagg YIN2_STRAM : 28- 37: itttd GvtGLg-DatL ngrel H 8: 15.6802 13( 8) A-x(1,2)-D-x-A-x(1,2)-D Occurences: 13(8) CATB_PSEPU : 144- 151: vawtl AsgDtAr-D iaeaq CLCB_PSEPU : 102- 110: nysak AaiDvAlhD lkars CLCB_PSEPU : 103- 110: ysaka Ai-DvAlhD lkars MANR_PSEPU : 105- 113: irmaa AgiDmAawD algkv RSPA_ECOLI : 88- 95: msais Av-DmAlwD ikaka TCBD_PSESP : 102- 110: nlsak AaiDiAlhD lkara TCBD_PSESP : 103- 110: lsaka Ai-DiAlhD lkara TCBD_PSESP : 139- 146: iawtl AsgDtAr-D idsal TCBD_PSESP : 258- 264: safel Ar-DhAv-D afslk TFDD_ALCEU : 254- 260: stlas Af-DlAr-D rsvdv YIDU_ECOLI : 289- 297: lmsai AgiDqAlwD ikgkv YIN2_STRAM : 88- 96: tmtai AavDtAlwD ilgkt YIN2_STRAM : 89- 96: mtaia Av-DtAlwD ilgkt I 9: 15.1802 10( 8) A-x(2,4)-L-x(0,1)-G-x(2)-A Occurences: 10(8) CATB_PSEPU : 77- 85: idahl Apa--LvGlpA dnina CATB_PSEPU : 185- 194: lkhvv AikreL-GdsA svrvd CLCB_PSEPU : 72- 80: ietyl Apl--LiGkdA tnlre MANR_PSEPU : 155- 162: eravt Aae--L-GfrA vktki RSPA_ECOLI : 136- 145: alddy ArhqeL-GfkA irvqc TCBD_PSESP : 72- 80: idnyl Apl--LvGkdA snlsq TFDD_ALCEU : 72- 80: veryl Aphl-L-GtdA fnvsg TFDD_ALCEU : 72- 80: veryl Aph--LlGtdA fnvsg TFDD_ALCEU : 180- 189: lihme AlsnsL-GskA ylrvd YIDU_ECOLI : 488- 497: ydvtl AphcpL-GpiA laacl YIN2_STRAM : 93- 102: aavdt AlwdiL-GktA glpvh J 10: 15.1802 15( 8) A-x(2,4)-D-x-A-x(1,2)-D Occurences: 15(8) CATB_PSEPU : 144- 151: vawtl Asg--DtAr-D iaeaq CLCB_PSEPU : 100- 110: tgnys AkaaiDvAlhD lkars CLCB_PSEPU : 102- 110: nysak Aai--DvAlhD lkars MANR_PSEPU : 103- 113: glirm AaagiDmAawD algkv MANR_PSEPU : 104- 113: lirma Aagi-DmAawD algkv MANR_PSEPU : 105- 113: irmaa Agi--DmAawD algkv RSPA_ECOLI : 85- 95: pvtms AisavDmAlwD ikaka TCBD_PSESP : 100- 110: tgnls AkaaiDiAlhD lkara TCBD_PSESP : 102- 110: nlsak Aai--DiAlhD lkara TCBD_PSESP : 139- 146: iawtl Asg--DtAr-D idsal TFDD_ALCEU : 252- 260: slstl Asaf-DlAr-D rsvdv YIDU_ECOLI : 287- 297: pilms AiagiDqAlwD ikgkv YIDU_ECOLI : 289- 297: lmsai Agi--DqAlwD ikgkv YIN2_STRAM : 86- 96: pvtmt AiaavDtAlwD ilgkt YIN2_STRAM : 88- 96: tmtai Aav--DtAlwD ilgkt K 11: 15.1802 15( 8) A-x(1,3)-D-x-A-x(1,2)-D Occurences: 15(8) CATB_PSEPU : 144- 151: vawtl Asg-DtAr-D iaeaq CLCB_PSEPU : 102- 110: nysak Aai-DvAlhD lkars CLCB_PSEPU : 103- 110: ysaka Ai--DvAlhD lkars MANR_PSEPU : 104- 113: lirma AagiDmAawD algkv MANR_PSEPU : 105- 113: irmaa Agi-DmAawD algkv RSPA_ECOLI : 88- 95: msais Av--DmAlwD ikaka TCBD_PSESP : 102- 110: nlsak Aai-DiAlhD lkara TCBD_PSESP : 103- 110: lsaka Ai--DiAlhD lkara TCBD_PSESP : 139- 146: iawtl Asg-DtAr-D idsal TCBD_PSESP : 258- 264: safel Ar--DhAv-D afslk TFDD_ALCEU : 252- 260: slstl AsafDlAr-D rsvdv TFDD_ALCEU : 254- 260: stlas Af--DlAr-D rsvdv YIDU_ECOLI : 289- 297: lmsai Agi-DqAlwD ikgkv YIN2_STRAM : 88- 96: tmtai Aav-DtAlwD ilgkt YIN2_STRAM : 89- 96: mtaia Av--DtAlwD ilgkt L 12: 15.1802 12( 8) A-x(1,3)-A-x(2)-D-x(1,2)-A Occurences: 12(8) CATB_PSEPU : 140- 149: dslev AwtlAsgDt-A rdiae CLCB_PSEPU : 100- 107: tgnys Ak--AaiDv-A lhdlk CLCB_PSEPU : 103- 113: ysaka AidvAlhDlkA rslnl MANR_PSEPU : 103- 110: glirm Aa--AgiDm-A awdal MANR_PSEPU : 103- 111: glirm Aa--AgiDmaA wdalg RSPA_ECOLI : 88- 98: msais AvdmAlwDikA kaanm TCBD_PSESP : 100- 107: tgnls Ak--AaiDi-A lhdlk TCBD_PSESP : 103- 113: lsaka AidiAlhDlkA ralnl TCBD_PSESP : 135- 144: tsipi AwtlAsgDt-A rdids TFDD_ALCEU : 103- 113: asaka AvemAllDlkA ralgv YIDU_ECOLI : 51- 60: eqsip AivdAygDk-A ligag YIDU_ECOLI : 287- 294: pilms Ai--AgiDq-A lwdik YIN2_STRAM : 86- 93: pvtmt Ai--AavDt-A lwdil M 13: 15.1802 12( 8) A-x(1,3)-A-x(1,2)-D-x-A Occurences: 12(8) CATB_PSEPU : 140- 149: dslev AwtlAsgDtA rdiae CATB_PSEPU : 259- 267: esved AfslAa-DgA asifa CLCB_PSEPU : 100- 107: tgnys Aka-Ai-DvA lhdlk CLCB_PSEPU : 100- 107: tgnys Ak--AaiDvA lhdlk MANR_PSEPU : 103- 110: glirm Aa--AgiDmA awdal RSPA_ECOLI : 85- 92: pvtms Ais-Av-DmA lwdik TCBD_PSESP : 100- 107: tgnls Aka-Ai-DiA lhdlk TCBD_PSESP : 100- 107: tgnls Ak--AaiDiA lhdlk TCBD_PSESP : 135- 144: tsipi AwtlAsgDtA rdids TCBD_PSESP : 254- 262: sslss AfelAr-DhA vdafs TFDD_ALCEU : 252- 258: slstl As--Af-DlA rdrsv YIDU_ECOLI : 51- 60: eqsip AivdAygDkA ligag YIDU_ECOLI : 287- 294: pilms Ai--AgiDqA lwdik YIN2_STRAM : 86- 93: pvtmt Aia-Av-DtA lwdil YIN2_STRAM : 86- 93: pvtmt Ai--AavDtA lwdil N 14: 15.1802 10( 8) A-x(4)-A-x(0,1)-L-x(2,4)-L Occurences: 10(8) CATB_PSEPU : 74- 83: kanid AhlapA-Lvg--L padni CLCB_PSEPU : 102- 111: nysak AaidvA-Lhd--L karsl CLCB_PSEPU : 236- 248: lrrls AdngvAiLadesL sslas MANR_PSEPU : 53- 62: hsylf AytpvA-Lks--L kqlld RSPA_ECOLI : 389- 401: ypyep AylpvArLedgtL wnw TCBD_PSESP : 102- 111: nlsak AaidiA-Lhd--L karal TCBD_PSESP : 308- 318: vgtaa AlhvyAtLps--L pygce TFDD_ALCEU : 102- 111: nasak AavemA-Lld--L karal YIDU_ECOLI : 168- 179: aqwid AgcagAgLgsd-L yragq YIN2_STRAM : 88- 98: tmtai AavdtA-Lwdi-L gktag O 15: 14.6802 8( 8) A-x(0,2)-P-x(1,3)-L-x-G Occurences: 8(8) CATB_PSEPU : 77- 82: idahl A--Pa--LvG lpadn CLCB_PSEPU : 72- 77: ietyl A--Pl--LiG kdatn MANR_PSEPU : 337- 344: feggn AviPd--LpG vgiiw RSPA_ECOLI : 101- 110: ikaka AnmPlyqLlG gasre TCBD_PSESP : 72- 77: idnyl A--Pl--LvG kdasn TFDD_ALCEU : 72- 77: veryl A--Ph--LlG tdafn YIDU_ECOLI : 305- 312: gkvln A--PvwqLmG glvrd YIN2_STRAM : 102- 111: ilgkt AglPvhqLlG grsrd P 16: 14.6802 9( 8) A-x(0,2)-I-x-A-x(2,4)-L Occurences: 9(8) CATB_PSEPU : 85- 93: lvglp AdnInAam--L kldkl CATB_PSEPU : 85- 95: lvglp AdnInAamlkL dklak CATB_PSEPU : 209- 216: wdesq A--IrAcqv-L gdngi CLCB_PSEPU : 241- 248: adngv A--IlAdes-L sslas MANR_PSEPU : 258- 266: eemfk AlsIgAcr--L ampda RSPA_ECOLI : 85- 93: pvtms A--IsAvdmaL wdika TCBD_PSESP : 241- 248: eqngv A--IlAdes-L sslss TFDD_ALCEU : 241- 248: dnnrv A--ImAdes-L stlas YIDU_ECOLI : 60- 68: aygdk Al-IgAgtv-L kpeqv YIN2_STRAM : 86- 94: pvtmt A--IaAvdtaL wdilg Q 17: 14.6802 10( 8) G-x(3)-L-x(0,2)-D-x(0,2)-L Occurences: 10(8) CATB_PSEPU : 172- 180: fklki GanpLaqD--L khvva CLCB_PSEPU : 239- 248: lsadn GvaiLa-DesL sslas CLCB_PSEPU : 326- 334: ecell GpwvLa-Dt-L tqtql MANR_PSEPU : 168- 176: vktki GypaLdqD--L avvrs MANR_PSEPU : 168- 176: vktki GypaL--DqdL avvrs RSPA_ECOLI : 27- 36: itted GitgLg-DatL ngrel TCBD_PSESP : 239- 248: lteqn GvaiLa-DesL sslss TCBD_PSESP : 326- 334: gceli GpwvLg-Dr-L tqqdl TFDD_ALCEU : 326- 334: gceli GpfvLa-Dt-L shepl YIDU_ECOLI : 456- 464: vleag GisiLqpD--L shagg YIN2_STRAM : 28- 37: itttd GvtgLg-DatL ngrel R 18: 14.6802 13( 8) A-x(2,4)-A-x(2,4)-L-x(3)-A Occurences: 13(8) CATB_PSEPU : 85- 99: lvglp AdninAamlkLdklA kgntf CLCB_PSEPU : 241- 252: adngv Ail--Ades-LsslA safel MANR_PSEPU : 152- 162: later Avt--Aae--LgfrA vktki RSPA_ECOLI : 131- 145: hside AlddyArhqeLgfkA irvqc TCBD_PSESP : 102- 115: nlsak AaidiAlhd-LkarA lnlsi TCBD_PSESP : 103- 115: lsaka Aidi-Alhd-LkarA lnlsi TFDD_ALCEU : 102- 115: nasak AavemAlld-LkarA lgvsi TFDD_ALCEU : 103- 115: asaka Avem-Alld-LkarA lgvsi TFDD_ALCEU : 241- 252: dnnrv Aim--Ades-LstlA safdl YIDU_ECOLI : 109- 122: vcpgc AtateAfta-LeagA agaen YIDU_ECOLI : 111- 122: pgcat Ate--Afta-LeagA agaen YIN2_STRAM : 88- 102: tmtai AavdtAlwdiLgktA glpvh YIN2_STRAM : 89- 102: mtaia Avdt-AlwdiLgktA glpvh S 19: 14.6802 12( 8) A-x(0,2)-A-x(0,2)-D-x-A Occurences: 12(8) CATB_PSEPU : 263- 267: dafsl A--A--DgA asifa CLCB_PSEPU : 100- 107: tgnys AkaAi-DvA lhdlk CLCB_PSEPU : 100- 107: tgnys Ak-AaiDvA lhdlk CLCB_PSEPU : 102- 107: nysak A--Ai-DvA lhdlk MANR_PSEPU : 103- 110: glirm Aa-AgiDmA awdal MANR_PSEPU : 104- 110: lirma A--AgiDmA awdal RSPA_ECOLI : 85- 92: pvtms AisAv-DmA lwdik TCBD_PSESP : 100- 107: tgnls AkaAi-DiA lhdlk TCBD_PSESP : 100- 107: tgnls Ak-AaiDiA lhdlk TCBD_PSESP : 102- 107: nlsak A--Ai-DiA lhdlk TFDD_ALCEU : 252- 258: slstl As-Af-DlA rdrsv YIDU_ECOLI : 287- 294: pilms Ai-AgiDqA lwdik YIN2_STRAM : 86- 93: pvtmt AiaAv-DtA lwdil YIN2_STRAM : 86- 93: pvtmt Ai-AavDtA lwdil YIN2_STRAM : 88- 93: tmtai A--Av-DtA lwdil T 20: 14.6802 11( 8) V-x(3,5)-A-x(2,4)-A-x(4)-L Occurences: 11(8) CATB_PSEPU : 81- 95: lapal Vglp--AdninAamlkL dklak CATB_PSEPU : 284- 298: ggpra Vlrt--AqiaeAagiaL yggtm CLCB_PSEPU : 94- 108: lmera VtgnysAka--AidvaL hdlka MANR_PSEPU : 81- 93: eplap Vsle--Aml--AkrfcL agytg RSPA_ECOLI : 81- 93: wrrgp Vtms--Ais--AvdmaL wdika TCBD_PSESP : 94- 108: lmdra VtgnlsAka--AidiaL hdlka TCBD_PSESP : 303- 318: mldst Vgtaa-AlhvyAtlpsL pygce TFDD_ALCEU : 94- 108: tmara VtgnasAka--AvemaL ldlka TFDD_ALCEU : 94- 108: tmara Vtgn--AsakaAvemaL ldlka YIDU_ECOLI : 25- 40: ealah VgavidAgfd-AveipL nspqw YIDU_ECOLI : 238- 253: gwgep Viegr-ArtveAavheL gdyli YIN2_STRAM : 82- 94: wrrgp Vtmt--Aia--AvdtaL wdilg YIN2_STRAM : 82- 98: wrrgp VtmtaiAavdtAlwdiL gktag Number of patterns evaluated by Pratt:8904 Total running time: 6 seconds