------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 20 sequences from file MOLYBDOPTERIN_PROK_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 20 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 45 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename MOLYBDOPTERIN_PROK_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: BISC_ECOLI 739 BISZ_ECOLI 810 DMSA_ECOLI 785 DMSA_HAEIN 806 FDHA_METFO 684 FDHF_ECOLI 715 FDNG_ECOLI 1016 FDOG_ECOLI 1016 FDXG_HAEIN 1028 NAPA_ALCEU 831 NAPA_ECOLI 809 NARB_SYNP7 729 NARG_BACSU 1228 NARG_ECOLI 1238 NARZ_ECOLI 1245 NASA_KLEPN 861 NASC_BACSU 676 PHSA_SALTY 758 PSRA_WOLSU 763 TORA_ECOLI 848 Pratt run started at Thu Feb 6 20:18:03 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 12.0102 31( 20) T-x(2,3)-A-x(5)-A 2: 12.0102 38( 20) A-x(2)-L-x(0,1)-G 3: 12.0102 40( 20) L-A-x(2,3)-G 4: 12.0102 28( 20) A-x(2,3)-D-x(2)-L 5: 11.5102 57( 20) G-x(2,3)-V-x(0,1)-A 6: 11.5102 47( 20) G-x(1,2)-V-x(0,1)-A 7: 11.5102 52( 20) A-x(3,4)-G-x(2,3)-V 8: 11.5102 67( 20) A-x(3,4)-G-x(3,4)-A 9: 11.5102 44( 20) A-x(3,5)-A-x(4)-G 10: 11.5102 43( 20) G-x(2,3)-V-x(2,3)-L 11: 11.5102 68( 20) L-x(0,1)-A-x(0,1)-A 12: 11.5102 33( 20) L-x(0,1)-A-x(3,4)-E 13: 11.5102 47( 20) L-x(1,2)-A-x(3,4)-E 14: 11.5102 61( 20) A-x(0,1)-A-x(0,1)-L 15: 11.5102 66( 20) A-x(0,1)-A-x(2,3)-A 16: 11.5102 59( 20) A-x(2,3)-A-x(0,1)-A 17: 11.5102 46( 20) T-x(2,3)-A-x(2,3)-A 18: 11.5102 40( 20) L-x(3,4)-G-x(2,3)-S 19: 11.5102 41( 20) D-x(2,4)-L-x(4)-G 20: 11.5102 31( 20) A-D-x(1,3)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 13.3934 41( 20) A-x(0,1)-A-x(0,1)-L-[ADGSV] B 2: 12.0102 31( 20) T-x(2,3)-A-x(5)-A C 3: 12.0102 38( 20) A-x(2)-L-x(0,1)-G D 4: 12.0102 40( 20) L-A-x(2,3)-G E 5: 12.0102 28( 20) A-x(2,3)-D-x(2)-L F 6: 11.5102 57( 20) G-x(2,3)-V-x(0,1)-A G 7: 11.5102 47( 20) G-x(1,2)-V-x(0,1)-A H 8: 11.5102 52( 20) A-x(3,4)-G-x(2,3)-V I 9: 11.5102 67( 20) A-x(3,4)-G-x(3,4)-A J 10: 11.5102 44( 20) A-x(3,5)-A-x(4)-G K 11: 11.5102 43( 20) G-x(2,3)-V-x(2,3)-L L 12: 11.5102 68( 20) L-x(0,1)-A-x(0,1)-A M 13: 11.5102 33( 20) L-x(0,1)-A-x(3,4)-E N 14: 11.5102 47( 20) L-x(1,2)-A-x(3,4)-E O 15: 11.5102 66( 20) A-x(0,1)-A-x(2,3)-A P 16: 11.5102 59( 20) A-x(2,3)-A-x(0,1)-A Q 17: 11.5102 46( 20) T-x(2,3)-A-x(2,3)-A R 18: 11.5102 40( 20) L-x(3,4)-G-x(2,3)-S S 19: 11.5102 41( 20) D-x(2,4)-L-x(4)-G T 20: 11.5102 31( 20) A-D-x(1,3)-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 13.3934 41( 20) A-x(0,1)-A-x(0,1)-L-[ADGSV] Occurences: 41(20) BISC_ECOLI : 306- 310: mivtl A-AmLG qigtp BISZ_ECOLI : 16- 20: hsgia AgA-LV vtsaa BISZ_ECOLI : 372- 376: mlvtl A-AmLG qigtp DMSA_ECOLI : 265- 268: rpgtd A-A-LV nglay DMSA_HAEIN : 18- 23: vkass AgAaLA vsnlt DMSA_HAEIN : 20- 23: assag A-A-LA vsnlt DMSA_HAEIN : 286- 289: rpgtd A-A-LV aalay DMSA_HAEIN : 290- 293: daalv A-A-LA yvmiq FDHA_METFO : 587- 591: amtrr A-AtLD revpt FDHA_METFO : 606- 610: inted A-AeLG ianke FDHF_ECOLI : 596- 599: mtgnc A-A-LA alade FDHF_ECOLI : 597- 602: tgnca AlAaLA depgy FDHF_ECOLI : 599- 602: ncaal A-A-LA depgy FDHF_ECOLI : 712- 715: trlre A-A-LA FDNG_ECOLI : 22- 25: agttv A-A-LG fapkq FDOG_ECOLI : 21- 25: magtt AaA-LG fapsv FDOG_ECOLI : 21- 25: magtt A-AaLG fapsv FDOG_ECOLI : 22- 25: agtta A-A-LG fapsv FDOG_ECOLI : 880- 884: ifkdd AeA-LG kadkf FDXG_HAEIN : 21- 25: magts A-AmLG fapan NAPA_ALCEU : 521- 525: tvtal A-AdLV lpsam NAPA_ALCEU : 756- 760: mhped AkA-LG lrrgv NAPA_ECOLI : 778- 782: mpffd A-AqLV nkltl NARB_SYNP7 : 297- 302: eltgl AvAeLV raadl NARG_BACSU : 640- 644: dynvl A-ArLG wlpsy NARG_BACSU : 1139- 1144: ngvvv ArAvLS hripk NARG_ECOLI : 304- 308: qgtda AmA-LA gippr NARG_ECOLI : 349- 353: grmlr A-AdLV dalgq NARG_ECOLI : 585- 589: gwqpl AfA-LD wqrpa NARG_ECOLI : 849- 853: iqhds A-AeLA qpldv NARG_ECOLI : 962- 967: qvavk AwAaLS eftgr NARG_ECOLI : 964- 967: avkaw A-A-LS eftgr NARZ_ECOLI : 592- 596: gwlpl AfA-LD wnrpp NASA_KLEPN : 47- 50: lcvkg A-A-LG etvgl NASA_KLEPN : 788- 793: qnaar AhAlLS grkgg NASC_BACSU : 205- 208: kpgtd A-A-LA nglvk NASC_BACSU : 468- 472: iicdl AsA-LG kgryf NASC_BACSU : 541- 544: hpdqk A-A-LS vipne NASC_BACSU : 584- 587: qtrks A-A-LA arhfe PHSA_SALTY : 18- 22: gigcs AcA-LG afppg PSRA_WOLSU : 19- 23: agaag A-AgLV wsqti TORA_ECOLI : 392- 396: mivvl A-AmLG qiglp B 2: 12.0102 31( 20) T-x(2,3)-A-x(5)-A Occurences: 31(20) BISC_ECOLI : 207- 216: aphmg Tdv-AlmlgiA htlve BISZ_ECOLI : 22- 31: galvv Tsa-AplpawA eekgg BISZ_ECOLI : 273- 282: apnmg Tdv-AlmlgiA htlmt BISZ_ECOLI : 707- 716: pitih Ted-AarfgiA ngdlv DMSA_ECOLI : 263- 272: pirpg Tda-AlvnglA yvmit DMSA_HAEIN : 284- 293: pirpg Tda-AlvaalA yvmiq FDHA_METFO : 427- 437: ifmtd TaefAdvvlpA acwae FDHA_METFO : 603- 612: yvein Ted-AaelgiA nkekv FDHF_ECOLI : 271- 281: svedi TgvsAseirqA armya FDHF_ECOLI : 592- 602: scrsm TgncAalaalA depgy FDNG_ECOLI : 906- 915: hfhtw Tkh-AllnaiA qpeqf FDOG_ECOLI : 263- 273: drscf TrtaAvadyyA pirsg FDXG_HAEIN : 173- 182: ttgim Tas-AmsneaA lltqk NAPA_ALCEU : 17- 27: taita TasvAgvtlpA gaanf NAPA_ALCEU : 265- 274: ifkpq Tdl-AmlnyiA nyiir NAPA_ECOLI : 433- 442: nipsg Tip-AkiglhA vaqdr NARB_SYNP7 : 461- 471: yhpte TttyAhlllpA aqwse NARB_SYNP7 : 462- 471: hptet Tty-AhlllpA aqwse NARB_SYNP7 : 694- 704: lwgdr TeanAlthpaA cpisg NARG_BACSU : 266- 275: vpltr Tpd-AhflaeA rykga NARG_ECOLI : 275- 285: vrykg TktvAvtpdyA eiakl NARZ_ECOLI : 946- 956: rplid TaidAsevilA lapet NASA_KLEPN : 70- 80: dgera TwpqAgggrfA pagdy NASA_KLEPN : 419- 429: vadtd TgrfAhirfpA lawge NASC_BACSU : 417- 427: lfise TakyAdvilpA ssyle NASC_BACSU : 531- 541: tgrlf TesfAhpdqkA alsvi PHSA_SALTY : 173- 182: fthas Tcp-AgkaiaA kvmmg PHSA_SALTY : 313- 323: vivrv TrelAacaphA ivspg PSRA_WOLSU : 453- 463: nnpvm TqtnAdtvikA lksmd TORA_ECOLI : 33- 43: gpsll TprrAtaaqaA tdavi TORA_ECOLI : 517- 527: nqwts TcrfAdivlpA ttqfe C 3: 12.0102 38( 20) A-x(2)-L-x(0,1)-G Occurences: 38(20) BISC_ECOLI : 210- 214: mgtdv AlmL-G iahtl BISC_ECOLI : 241- 246: gyavf AsyLlG esdgi BISC_ECOLI : 306- 310: mivtl AamL-G qigtp BISZ_ECOLI : 276- 280: mgtdv AlmL-G iahtl BISZ_ECOLI : 372- 376: mlvtl AamL-G qigtp BISZ_ECOLI : 797- 802: kytgn ApkLtG fgqpa DMSA_ECOLI : 310- 314: nghyk AyiL-G egpdg DMSA_ECOLI : 545- 549: mtsel AkrL-G veqqf DMSA_HAEIN : 331- 335: nghyk AyiL-G ygndg FDHA_METFO : 85- 89: aydli AskL-G aydpn FDHA_METFO : 172- 177: ansle AhpLvG rklmr FDHA_METFO : 606- 610: inted AaeL-G ianke FDHF_ECOLI : 291- 296: aqaks AaiLwG mgvtq FDHF_ECOLI : 615- 619: inted AkrL-G iedea FDNG_ECOLI : 181- 185: ltqkf ArsL-G mlavd FDOG_ECOLI : 21- 25: magtt AaaL-G fapsv FDOG_ECOLI : 880- 884: ifkdd AeaL-G kadkf FDOG_ECOLI : 928- 932: igesl AnkL-G iaqgd FDXG_HAEIN : 21- 25: magts AamL-G fapan FDXG_HAEIN : 701- 706: savel AkeLnG yaled NAPA_ALCEU : 210- 215: feaad AfvLwG snmae NAPA_ALCEU : 756- 760: mhped AkaL-G lrrgv NAPA_ECOLI : 189- 194: ieqad AfvLwG anmae NARB_SYNP7 : 371- 376: etggl AhlLpG yrkvi NARG_BACSU : 640- 644: dynvl AarL-G wlpsy NARG_ECOLI : 304- 309: qgtda AmaLaG ippra NARG_ECOLI : 650- 654: gwlps ApqL-G tnplt NARG_ECOLI : 1116- 1120: lsead AkdL-G iadnd NARZ_ECOLI : 657- 661: gwlps ApqL-G rnplg NASA_KLEPN : 473- 478: agrgl AsaLpG sirtr NASC_BACSU : 97- 101: itnee AylL-G kfarv NASC_BACSU : 329- 334: ehgqk AdqLpG yrsie NASC_BACSU : 468- 472: iicdl AsaL-G kgryf PHSA_SALTY : 18- 22: gigcs AcaL-G afppg PSRA_WOLSU : 679- 683: ihpkt AskL-G ikngd TORA_ECOLI : 24- 28: ggltv AgmL-G psllt TORA_ECOLI : 344- 349: kdaaw AekLsG idaet TORA_ECOLI : 392- 396: mivvl AamL-G qiglp D 4: 12.0102 40( 20) L-A-x(2,3)-G Occurences: 40(20) BISC_ECOLI : 305- 310: wmivt LAamlG qigtp BISZ_ECOLI : 371- 376: wmlvt LAamlG qigtp DMSA_ECOLI : 341- 346: dkiik LAreiG stkpa DMSA_ECOLI : 375- 380: raism LAiltG nvgin DMSA_ECOLI : 544- 549: emtse LAkrlG veqqf DMSA_HAEIN : 362- 367: eriik LAreiG stkpa DMSA_HAEIN : 565- 570: dmlsd LAekmG vkekf FDHA_METFO : 140- 145: ptvag LAasfG sgamt FDHA_METFO : 307- 312: mqtan LAmltG nigrl FDHA_METFO : 477- 482: eifcd LAkkmG adpem FDHF_ECOLI : 315- 320: rslts LAmltG nlgkp FDHF_ECOLI : 601- 606: aalaa LAdepG yaqin FDNG_ECOLI : 204- 209: ptvas LAptfG rgamt FDNG_ECOLI : 927- 932: eiset LAaakG inngd FDOG_ECOLI : 204- 209: ptvas LAptfG rgamt FDOG_ECOLI : 927- 932: eiges LAnklG iaqgd FDXG_HAEIN : 212- 217: ptvas LApsfG rgamt FDXG_HAEIN : 933- 938: eigek LAaekG iqkgd NAPA_ALCEU : 254- 258: hrcfd LAdi-G iifkp NAPA_ECOLI : 233- 237: hrsfe LAdn-G iiftp NARB_SYNP7 : 239- 244: vadlh LAlkpG sdval NARB_SYNP7 : 550- 554: lshel LAqa-G pqqwp NARG_BACSU : 310- 315: gtdga LAmamG hvilq NARG_BACSU : 471- 475: vfdli LAny-G vnrgi NARG_BACSU : 639- 644: adynv LAarlG wlpsy NARG_BACSU : 853- 858: dtmqe LAqpfG kindw NARG_ECOLI : 295- 300: lcdlw LApkqG tdaam NARG_ECOLI : 470- 474: vydlt LAny-G lergl NARZ_ECOLI : 295- 300: lcdqw LApkqG tdsal NARZ_ECOLI : 305- 310: gtdsa LAmamG hvilk NARZ_ECOLI : 477- 481: vydlv LAny-G ldrgl NASA_KLEPN : 206- 211: iadrh LAlapG sdggl NASA_KLEPN : 359- 363: wgser LAqt-G gltgl NASA_KLEPN : 359- 364: wgser LAqtgG ltgle NASA_KLEPN : 750- 755: kvwnl LAwraG elmlg NASC_BACSU : 467- 472: qiicd LAsalG kgryf PHSA_SALTY : 158- 163: shlfh LAtafG spntf PSRA_WOLSU : 161- 166: twfhh LAqayG spnif PSRA_WOLSU : 414- 418: dgeff LAnk-G egivs TORA_ECOLI : 15- 19: srrrf LAql-G gltva TORA_ECOLI : 15- 20: srrrf LAqlgG ltvag TORA_ECOLI : 391- 396: wmivv LAamlG qiglp E 5: 12.0102 28( 20) A-x(2,3)-D-x(2)-L Occurences: 28(20) BISC_ECOLI : 424- 431: fwtaa AkhaDivL patts BISC_ECOLI : 678- 684: ciheg Awp-DldL tadgi BISZ_ECOLI : 497- 504: ywtaa AkhaDivL pitts DMSA_ECOLI : 491- 498: hmtss AkyaDilL pdcta DMSA_HAEIN : 512- 519: hmtst AkysDilL pdctt FDHA_METFO : 154- 161: mtnsy AsfeDadL ifsig FDHA_METFO : 428- 435: fmtdt AefaDvvL paacw FDHF_ECOLI : 418- 424: savrk Afe-DleL vivqd FDHF_ECOLI : 436- 443: fmtkt AsaaDviL pstsw FDNG_ECOLI : 348- 354: dengy Akr-DetL thprc FDOG_ECOLI : 670- 676: aeqgg Anp-DqvL nmtwn FDXG_HAEIN : 355- 361: dengh Akr-DmtL qhprc NAPA_ALCEU : 519- 526: yptvt AlaaDlvL psamw NAPA_ECOLI : 442- 449: kiglh AvaqDraL kdgkl NAPA_ECOLI : 448- 454: vaqdr Alk-DgkL nvywt NAPA_ECOLI : 497- 504: yptvs AlaaDliL ptamw NARB_SYNP7 : 181- 188: sdgpp AcyeDldL adcll NARB_SYNP7 : 232- 239: rctpt AevaDlhL alkpg NARG_BACSU : 771- 778: rmagt AlysDivL paatw NARG_ECOLI : 288- 295: dyaei AklcDlwL apkqg NARZ_ECOLI : 288- 295: dysev AklcDqwL apkqg NASA_KLEPN : 209- 216: rhlal ApgsDggL fvgll NASC_BACSU : 418- 425: fiset AkyaDviL passy PHSA_SALTY : 470- 477: ylses AayaDylL pecty PHSA_SALTY : 471- 477: lsesa Aya-DylL pecty PSRA_WOLSU : 481- 488: qvsdt AwfaDvvL pdtty TORA_ECOLI : 452- 459: stipi ArfiDaiL epgkv TORA_ECOLI : 634- 641: fvrhq AfreDpdL eplgt F 6: 11.5102 57( 20) G-x(2,3)-V-x(0,1)-A Occurences: 57(20) BISC_ECOLI : 206- 210: vaphm Gtd-V-A lmlgi BISC_ECOLI : 236- 241: arctt Gya-VfA syllg BISZ_ECOLI : 243- 248: qlkks Gkp-ViA idpir BISZ_ECOLI : 272- 276: iapnm Gtd-V-A lmlgi BISZ_ECOLI : 804- 810: kltgf GqpaVqA DMSA_ECOLI : 68- 74: ddnyd GlhqVrA clrgr DMSA_ECOLI : 154- 159: rswpp GntlV-A rlmnc DMSA_ECOLI : 316- 321: yilge GpdgV-A ktpew DMSA_ECOLI : 597- 601: krdpq Ghh-V-A ykafr DMSA_HAEIN : 618- 622: kvdpn Gfk-V-A ykdfr FDHA_METFO : 134- 138: arlch Gpt-V-A glaas FDHA_METFO : 213- 217: ipfkt Gtd-V-A lmnam FDHA_METFO : 345- 350: ptdyp GyrkV-A dqevm FDHF_ECOLI : 24- 29: lvvdn Gki-VrA eaaqg FDHF_ECOLI : 142- 146: arvch Gps-V-A glhqs FDNG_ECOLI : 18- 22: aggma Gtt-V-A algfa FDNG_ECOLI : 18- 23: aggma Gtt-VaA lgfap FDNG_ECOLI : 198- 202: arvch Gpt-V-A slapt FDNG_ECOLI : 439- 444: nmgma Ggg-VnA lrghs FDNG_ECOLI : 557- 562: gyfcq GfnpV-A sfpdk FDNG_ECOLI : 978- 983: ipihw GfegV-A rkgyi FDOG_ECOLI : 198- 202: arvch Gpt-V-A slapt FDOG_ECOLI : 439- 444: nmgma Ggg-VnA lrghs FDOG_ECOLI : 556- 561: gyicq GfnpV-A sfpnk FDOG_ECOLI : 978- 983: ipihw GyegV-A kkgfi FDXG_HAEIN : 206- 210: antch Gpt-V-A slaps NAPA_ALCEU : 56- 60: cgtgc Gvt-V-A vkdnk NAPA_ALCEU : 141- 146: vlkek GptaV-A csapa NAPA_ECOLI : 43- 47: vgtqq Grv-V-A cqgdp NAPA_ECOLI : 439- 444: ipaki GlhaV-A qdral NARB_SYNP7 : 73- 77: mvcvk Gat-V-A esvsk NARB_SYNP7 : 244- 248: lalkp Gsd-V-A llngl NARB_SYNP7 : 295- 299: taelt Gla-V-A elvra NARB_SYNP7 : 421- 426: eqgav GflwV-A atnpa NARB_SYNP7 : 421- 427: eqgav GflwVaA tnpav NARG_BACSU : 160- 165: qargk Ggf-VrA ewpev NARG_BACSU : 675- 679: tpedv Gay-V-A sqlqe NARG_BACSU : 897- 901: kmtal Gpn-V-A lkpsg NARG_BACSU : 959- 965: sstsn GkvaVkA wesle NARG_BACSU : 1135- 1139: cfnrn Gvv-V-A ravls NARG_ECOLI : 181- 186: tikny GpdrV-A gfspi NARG_ECOLI : 274- 279: evryk GtktV-A vtpdy NARG_ECOLI : 373- 377: afntn Gem-V-A pngsi NARG_ECOLI : 956- 962: apetn GqvaVkA waals NARZ_ECOLI : 181- 186: tikty GpdrV-A gfspi NARZ_ECOLI : 963- 969: apetn GhvaVkA wqalg NARZ_ECOLI : 1054- 1059: wmraf GeslV-A yrppi NASA_KLEPN : 14- 19: pycgv Gcg-ViA sraph NASA_KLEPN : 375- 381: lfaai GrgeVkA vwimg NASA_KLEPN : 622- 626: vrspk Gvm-V-A kvtig NASC_BACSU : 665- 670: ackmp Gfk-VcA vriip PHSA_SALTY : 138- 143: ikaqh GpesV-A fssks PHSA_SALTY : 210- 214: hnlye Gie-V-A dthel PHSA_SALTY : 374- 378: ynkla Gek-V-A ptlak PSRA_WOLSU : 82- 87: kdksr Ggk-VcA rggsg PSRA_WOLSU : 141- 146: ikqkh GahtV-A ftars TORA_ECOLI : 19- 24: flaql GgltV-A gmlgp TORA_ECOLI : 20- 24: laqlg Glt-V-A gmlgp TORA_ECOLI : 69- 73: atvkd Grf-V-A akpfe TORA_ECOLI : 69- 74: atvkd Grf-VaA kpfel G 7: 11.5102 47( 20) G-x(1,2)-V-x(0,1)-A Occurences: 47(20) BISC_ECOLI : 206- 210: vaphm GtdV-A lmlgi BISC_ECOLI : 236- 241: arctt GyaVfA syllg BISZ_ECOLI : 243- 248: qlkks GkpViA idpir BISZ_ECOLI : 272- 276: iapnm GtdV-A lmlgi DMSA_ECOLI : 597- 601: krdpq GhhV-A ykafr DMSA_ECOLI : 735- 738: prmmp Gv-V-A lgega DMSA_HAEIN : 618- 622: kvdpn GfkV-A ykdfr DMSA_HAEIN : 756- 759: priip Gv-V-A lsega FDHA_METFO : 134- 138: arlch GptV-A glaas FDHA_METFO : 213- 217: ipfkt GtdV-A lmnam FDHF_ECOLI : 24- 29: lvvdn GkiVrA eaaqg FDHF_ECOLI : 142- 146: arvch GpsV-A glhqs FDHF_ECOLI : 393- 397: hraah Ge-VrA ayimg FDNG_ECOLI : 18- 22: aggma GttV-A algfa FDNG_ECOLI : 18- 23: aggma GttVaA lgfap FDNG_ECOLI : 198- 202: arvch GptV-A slapt FDNG_ECOLI : 439- 444: nmgma GggVnA lrghs FDNG_ECOLI : 440- 444: mgmag Gg-VnA lrghs FDOG_ECOLI : 198- 202: arvch GptV-A slapt FDOG_ECOLI : 439- 444: nmgma GggVnA lrghs FDOG_ECOLI : 440- 444: mgmag Gg-VnA lrghs FDXG_HAEIN : 206- 210: antch GptV-A slaps NAPA_ALCEU : 56- 60: cgtgc GvtV-A vkdnk NAPA_ECOLI : 43- 47: vgtqq GrvV-A cqgdp NAPA_ECOLI : 43- 47: vgtqq Gr-VvA cqgdp NARB_SYNP7 : 73- 77: mvcvk GatV-A esvsk NARB_SYNP7 : 244- 248: lalkp GsdV-A llngl NARB_SYNP7 : 295- 299: taelt GlaV-A elvra NARG_BACSU : 160- 165: qargk GgfVrA ewpev NARG_BACSU : 161- 165: argkg Gf-VrA ewpev NARG_BACSU : 675- 679: tpedv GayV-A sqlqe NARG_BACSU : 897- 901: kmtal GpnV-A lkpsg NARG_BACSU : 959- 962: sstsn Gk-V-A vkawe NARG_BACSU : 1135- 1139: cfnrn GvvV-A ravls NARG_BACSU : 1135- 1139: cfnrn Gv-VvA ravls NARG_ECOLI : 373- 377: afntn GemV-A pngsi NARG_ECOLI : 956- 959: apetn Gq-V-A vkawa NARZ_ECOLI : 963- 966: apetn Gh-V-A vkawq NASA_KLEPN : 14- 19: pycgv GcgViA sraph NASA_KLEPN : 377- 381: aaigr Ge-VkA vwimg NASA_KLEPN : 622- 626: vrspk GvmV-A kvtig NASC_BACSU : 665- 670: ackmp GfkVcA vriip PHSA_SALTY : 210- 214: hnlye GieV-A dthel PHSA_SALTY : 374- 378: ynkla GekV-A ptlak PHSA_SALTY : 642- 645: lyfiq Gk-V-A vhtng PSRA_WOLSU : 82- 87: kdksr GgkVcA rggsg PSRA_WOLSU : 83- 87: dksrg Gk-VcA rggsg TORA_ECOLI : 20- 24: laqlg GltV-A gmlgp TORA_ECOLI : 69- 73: atvkd GrfV-A akpfe TORA_ECOLI : 69- 74: atvkd GrfVaA kpfel TORA_ECOLI : 748- 752: vfnar Gq-VmA gavvs H 8: 11.5102 52( 20) A-x(3,4)-G-x(2,3)-V Occurences: 52(20) BISC_ECOLI : 202- 209: kmewv Aphm-Gtd-V almlg BISC_ECOLI : 231- 239: deafl ArcttGya-V fasyl BISZ_ECOLI : 41- 49: gkilt Agrw-GamnV evkdg BISZ_ECOLI : 268- 275: natwi Apnm-Gtd-V almlg DMSA_ECOLI : 265- 274: rpgtd AalvnGlayV miten DMSA_ECOLI : 266- 274: pgtda Alvn-GlayV miten DMSA_HAEIN : 452- 460: gtemt Altd-GirgV dklss FDHA_METFO : 129- 137: nidhc ArlchGpt-V aglaa FDHA_METFO : 381- 389: pemid Aaak-GdlkV lyitg FDHF_ECOLI : 124- 133: vmqkf AraviGtnnV dccar FDHF_ECOLI : 137- 145: nvdcc ArvchGps-V aglhq FDHF_ECOLI : 291- 299: aqaks AailwGmg-V tqfyq FDHF_ECOLI : 292- 299: qaksa Ailw-Gmg-V tqfyq FDNG_ECOLI : 13- 21: ffkic AggmaGtt-V aalgf FDNG_ECOLI : 181- 189: ltqkf Arsl-GmlaV dnqar FDNG_ECOLI : 193- 201: avdnq ArvchGpt-V aslap FDOG_ECOLI : 90- 99: pvnrg AlcpkGaglV dfihs FDOG_ECOLI : 147- 155: danyi AqnaeGvt-V nrwls FDOG_ECOLI : 193- 201: avdnq ArvchGpt-V aslap FDOG_ECOLI : 620- 627: pstcf Aeen-Gsi-V nsgrw FDOG_ECOLI : 816- 823: ipdys Aapp-Gsg-V gpfim FDXG_HAEIN : 201- 209: pvcnq AntchGpt-V aslap FDXG_HAEIN : 627- 634: pttcf Aeee-Gsi-V nsgrw NAPA_ALCEU : 75- 84: qgdpq AevnkGlncV kgyfl NAPA_ALCEU : 318- 326: kaakn Asdp-GaakV itfde NAPA_ALCEU : 787- 795: trgrd Appr-GlvfV pwfda NAPA_ECOLI : 448- 456: vaqdr Alkd-GklnV ywtmc NARB_SYNP7 : 240- 247: adlhl Alkp-Gsd-V allng NARB_SYNP7 : 291- 298: ppqrt Aelt-Gla-V aelvr NARB_SYNP7 : 371- 380: etggl AhllpGyrkV idpqh NARB_SYNP7 : 674- 682: akvtt Aisp-GvlfV pmhwg NARG_BACSU : 156- 163: ksykq Argk-Ggf-V raewp NARG_BACSU : 275- 282: hflae Aryk-Gak-V isisp NARG_ECOLI : 368- 376: ewktv AfntnGem-V apngs NARG_ECOLI : 664- 672: tiage Aeka-GmnpV dytvk NARG_ECOLI : 951- 960: miltl ApetnGqvaV kawaa NARZ_ECOLI : 377- 385: qwktv AvntaGel-V vpngs NARZ_ECOLI : 377- 386: qwktv AvntaGelvV pngsi NARZ_ECOLI : 958- 967: vilal ApetnGhvaV kawqa NASA_KLEPN : 209- 218: rhlal ApgsdGglfV gllna NASA_KLEPN : 633- 641: vtige Angp-GslfV pmhwn NASC_BACSU : 660- 668: ealdp AckmpGfk-V cavri PHSA_SALTY : 84- 93: gtric ArggsGvslV ndpqr PHSA_SALTY : 222- 230: helmt Aqek-GakmV sfdpr PHSA_SALTY : 248- 257: adewh AirpgGdlaV llamc PSRA_WOLSU : 62- 70: sctie Arve-GdkgV firgn PSRA_WOLSU : 180- 188: stcpl AynmaGrd-V fggsm PSRA_WOLSU : 225- 232: rqyme Aien-Gak-V vtlep PSRA_WOLSU : 225- 233: rqyme Aien-GakvV tlepr PSRA_WOLSU : 326- 334: kaapk AifdfGhr-V tftpq TORA_ECOLI : 16- 23: rrrfl Aqlg-Glt-V agmlg TORA_ECOLI : 64- 72: wgair AtvkdGrf-V aakpf TORA_ECOLI : 414- 422: whyng Agtp-GrkgV ilsgf TORA_ECOLI : 783- 792: ggelg AlckyGnpnV ltidi I 9: 11.5102 67( 20) A-x(3,4)-G-x(3,4)-A Occurences: 67(20) BISC_ECOLI : 202- 210: kmewv Aphm-Gtdv-A lmlgi BISC_ECOLI : 231- 241: deafl ArcttGyavfA syllg BISC_ECOLI : 258- 267: ktaew AaeicGvga-A kirel BISC_ECOLI : 259- 267: taewa Aeic-Gvga-A kirel BISZ_ECOLI : 31- 41: plpaw AeekgGkiltA grwga BISZ_ECOLI : 268- 276: natwi Apnm-Gtdv-A lmlgi BISZ_ECOLI : 324- 333: ksavw AaeitGvpe-A qivkl BISZ_ECOLI : 325- 333: savwa Aeit-Gvpe-A qivkl BISZ_ECOLI : 419- 427: ghase Aadd-Ggmt-A ipvar BISZ_ECOLI : 797- 807: kytgn ApkltGfgqpA vqa DMSA_ECOLI : 302- 310: tlpas Apkn-Ghyk-A yilge DMSA_ECOLI : 342- 351: kiikl Arei-GstkpA fisqg DMSA_ECOLI : 422- 431: fmwtd Aier-GpemtA lrdgv DMSA_HAEIN : 15- 23: rdfvk Assa-Gaal-A vsnlt DMSA_HAEIN : 323- 331: tlptd Apkn-Ghyk-A yilgy DMSA_HAEIN : 363- 372: riikl Arei-GstkpA fisqg DMSA_HAEIN : 443- 452: flwtd Aiir-GtemtA ltdgi DMSA_HAEIN : 759- 767: ipgvv Alse-Gawy-A pdkdr FDHA_METFO : 129- 138: nidhc ArlchGptv-A glaas FDHF_ECOLI : 137- 146: nvdcc ArvchGpsv-A glhqs FDHF_ECOLI : 217- 225: admhi Alkn-Gsni-A llnam FDHF_ECOLI : 615- 624: inted Akrl-GiedeA lvwvh FDNG_ECOLI : 13- 22: ffkic AggmaGttv-A algfa FDNG_ECOLI : 13- 23: ffkic AggmaGttvaA lgfap FDNG_ECOLI : 193- 202: avdnq ArvchGptv-A slapt FDNG_ECOLI : 236- 244: gnaae Ahpv-Gfrw-A meakn FDNG_ECOLI : 647- 655: dapge Arnd-Geil-A giyhh FDNG_ECOLI : 942- 950: drvtv Askr-Gfir-A vavvt FDOG_ECOLI : 13- 22: ffkic AggmaGtta-A algfa FDOG_ECOLI : 13- 23: ffkic AggmaGttaaA lgfap FDOG_ECOLI : 193- 202: avdnq ArvchGptv-A slapt FDOG_ECOLI : 236- 244: gnaae Ahpv-Gfrw-A meaki FDOG_ECOLI : 273- 282: vadyy ApirsGtdi-A flsgv FDOG_ECOLI : 694- 703: sseev AmesnGkal-A ditdp FDXG_HAEIN : 13- 22: ffkic AggmaGtsa-A mlgfa FDXG_HAEIN : 21- 29: magts Aaml-Gfap-A nvlaa FDXG_HAEIN : 201- 210: pvcnq AntchGptv-A slaps FDXG_HAEIN : 244- 252: gnpae Ahpv-Gfrw-A ieakk FDXG_HAEIN : 836- 844: pfims Aegv-Grlf-A vdkia NAPA_ALCEU : 18- 27: aitat Asva-GvtlpA gaanf NAPA_ALCEU : 210- 219: feaad AfvlwGsnm-A emhpi NAPA_ECOLI : 10- 19: acrav AravvGqqe-A ikwdk NAPA_ECOLI : 189- 198: ieqad AfvlwGanm-A emhpi NARB_SYNP7 : 240- 248: adlhl Alkp-Gsdv-A llngl NARB_SYNP7 : 291- 299: ppqrt Aelt-Glav-A elvra NARG_BACSU : 156- 165: ksykq ArgkgGfvr-A ewpev NARG_BACSU : 156- 165: ksykq Argk-GgfvrA ewpev NARG_BACSU : 558- 567: vllvg AqgvnGggw-A hyvgq NARG_ECOLI : 296- 304: cdlwl Apkq-Gtda-A malag NARG_ECOLI : 304- 314: qgtda AmalaGipprA tqasi NARG_ECOLI : 334- 342: adagd Agrt-Ggyy-A agrml NARG_ECOLI : 334- 343: adagd AgrtgGyya-A grmlr NARG_ECOLI : 334- 343: adagd Agrt-GgyyaA grmlr NARG_ECOLI : 368- 377: ewktv AfntnGemv-A pngsi NARG_ECOLI : 641- 650: dfnvr Aerm-GwlpsA pqlgt NARZ_ECOLI : 296- 304: cdqwl Apkq-Gtds-A lamam NARZ_ECOLI : 648- 657: dfnvr Aerm-GwlpsA pqlgr NARZ_ECOLI : 685- 694: eftaq Alks-GdlrmA ceqpd NASA_KLEPN : 351- 360: dlrrp Arfw-GserlA qtggl NASA_KLEPN : 372- 381: glelf AaigrGevk-A vwimg NASA_KLEPN : 373- 381: lelfa Aigr-Gevk-A vwimg NASA_KLEPN : 459- 468: pppge AraagGlsp-A grgla NASA_KLEPN : 459- 468: pppge Araa-GglspA grgla NASC_BACSU : 172- 181: pyfek Aken-GayfiA idpre NASC_BACSU : 267- 277: aavkf AketsGmlftA rgieq NASC_BACSU : 312- 322: ysgyg AitgqGngqgA rehgq NASC_BACSU : 660- 670: ealdp AckmpGfkvcA vriip PHSA_SALTY : 75- 84: qgnps Apqq-GtricA rggsg PHSA_SALTY : 182- 191: gkaia AkvmmGgdl-A mdian PHSA_SALTY : 248- 256: adewh Airp-Ggdl-A vllam PSRA_WOLSU : 730- 739: kdlkr Aygk-GvnsnA lmpsf TORA_ECOLI : 16- 24: rrrfl Aqlg-Gltv-A gmlgp TORA_ECOLI : 64- 73: wgair AtvkdGrfv-A akpfe TORA_ECOLI : 64- 74: wgair AtvkdGrfvaA kpfel J 10: 11.5102 44( 20) A-x(3,5)-A-x(4)-G Occurences: 44(20) BISC_ECOLI : 66- 75: krire Aygp--AsifaG sygwr BISC_ECOLI : 252- 263: esdgi AktaewAaeicG vgaak BISC_ECOLI : 358- 368: dkipv Arive-AlenpG gayqh BISZ_ECOLI : 25- 36: vvtsa AplpawAeekgG kilta BISZ_ECOLI : 413- 424: sgpai AghaseAaddgG mtaip BISZ_ECOLI : 431- 441: taipv Arivd-AlenpG gkyqh DMSA_ECOLI : 321- 332: gpdgv AktpewAsqitG vpadk DMSA_HAEIN : 342- 353: gndgi AktpewAakitG ipaer FDHA_METFO : 138- 147: hgptv Agla--AsfgsG amtns FDHA_METFO : 167- 177: ifsig Ansle-AhplvG rklmr FDHF_ECOLI : 286- 296: aarmy Aqaks-AailwG mgvtq FDHF_ECOLI : 391- 402: lphra AhgevrAayimG edplq FDNG_ECOLI : 188- 198: slgml Avdnq-ArvchG ptvas FDNG_ECOLI : 269- 278: rtasv Adiy--ApirsG tditf FDOG_ECOLI : 143- 152: kedrd Anyi--AqnaeG vtvnr FDOG_ECOLI : 188- 198: algml Avdnq-ArvchG ptvas FDOG_ECOLI : 267- 278: ftrta AvadyyApirsG tdiaf FDOG_ECOLI : 269- 278: rtaav Adyy--ApirsG tdiaf FDXG_HAEIN : 276- 285: rtasv Adlh--ApirsG sditf FDXG_HAEIN : 697- 706: phsps Avel--AkelnG yaled NAPA_ALCEU : 178- 188: nidpn Arhcm-AsaaaG fmrtf NAPA_ECOLI : 5- 15: mpvs Acrav-AravvG qqeai NAPA_ECOLI : 157- 167: nidpn Arhcm-AsavvG fmrtf NARB_SYNP7 : 698- 709: rtean AlthpaAcpisG epelk NARG_BACSU : 150- 161: enpek AksykqArgkgG fvrae NARG_BACSU : 895- 906: fhkmt AlgpnvAlkpsG tkgms NARG_ECOLI : 329- 339: actrh Adagd-AgrtgG yyaag NARG_ECOLI : 493- 504: yddvk AytpawAeqitG vsrsq NARZ_ECOLI : 424- 434: lgqhd Avagv-AfpyfG gienp NASA_KLEPN : 468- 478: gglsp Agrgl-AsalpG sirtr NASC_BACSU : 123- 133: rlcms Aaata-AnqtfG adrgl NASC_BACSU : 124- 133: lcmsa Aata--AnqtfG adrgl NASC_BACSU : 262- 272: vdirk Aavkf-AketsG mlfta NASC_BACSU : 263- 272: dirka Avkf--AketsG mlfta NASC_BACSU : 656- 665: dlige Aldp--AckmpG fkvca PHSA_SALTY : 176- 187: astcp AgkaiaAkvmmG gdlam PHSA_SALTY : 243- 253: ifssk Adewh-AirpgG dlavl PHSA_SALTY : 317- 328: vtrel AacaphAivspG hratf PHSA_SALTY : 318- 328: trela Acaph-AivspG hratf PHSA_SALTY : 719- 729: gfgak Agakt-AatthG ihcgn PSRA_WOLSU : 320- 331: laref AkaapkAifdfG hrvtf PSRA_WOLSU : 322- 331: refak Aapk--AifdfG hrvtf TORA_ECOLI : 452- 462: stipi Arfid-AilepG kvinw TORA_ECOLI : 761- 770: vsdry Apgv--AriheG awydp K 11: 11.5102 43( 20) G-x(2,3)-V-x(2,3)-L Occurences: 43(20) BISC_ECOLI : 206- 213: vaphm Gtd-ValmL giaht BISZ_ECOLI : 272- 279: iapnm Gtd-ValmL giaht DMSA_ECOLI : 68- 76: ddnyd GlhqVracL rgrsm DMSA_ECOLI : 154- 161: rswpp GntlVar-L mnccg DMSA_ECOLI : 220- 227: etrms Ggg-VtyyL eqarq DMSA_HAEIN : 456- 463: taltd GirgVdk-L sspik FDHA_METFO : 134- 140: arlch Gpt-Vag-L aasfg FDHA_METFO : 318- 324: nigrl Gtg-Vnp-L rgqnn FDHF_ECOLI : 142- 148: arvch Gps-Vag-L hqsvg FDHF_ECOLI : 305- 312: tqfyq GvetVrs-L tslam FDNG_ECOLI : 18- 24: aggma Gtt-Vaa-L gfapk FDNG_ECOLI : 152- 159: ekneq Gvt-VnrwL stgml FDNG_ECOLI : 198- 204: arvch Gpt-Vas-L aptfg FDNG_ECOLI : 439- 445: nmgma Ggg-Vna-L rghsn FDNG_ECOLI : 669- 676: lyqse GgkgVep-L mkmsw FDNG_ECOLI : 670- 676: yqseg Gkg-Vep-L mkmsw FDOG_ECOLI : 152- 159: aqnae Gvt-VnrwL stgml FDOG_ECOLI : 198- 204: arvch Gpt-Vas-L aptfg FDOG_ECOLI : 439- 445: nmgma Ggg-Vna-L rghsn FDXG_HAEIN : 206- 212: antch Gpt-Vas-L apsfg FDXG_HAEIN : 563- 570: gwilq Gfn-VlnsL pnknk NAPA_ALCEU : 695- 702: ygnpd Gka-VifaL pyepp NAPA_ECOLI : 673- 680: ygkpd Gka-VifaL pfepa NARB_SYNP7 : 244- 250: lalkp Gsd-Val-L nglgw NARB_SYNP7 : 295- 301: taelt Gla-Vae-L vraad NARG_BACSU : 675- 682: tpedv Gay-VasqL qekkl NARG_BACSU : 1074- 1082: rpdqe GkeiVlnyL tphnk NARG_ECOLI : 1017- 1024: vsyna GytnVhe-L ipwrt NARG_ECOLI : 1105- 1111: ltlgr Ggp-Vvw-L seada NARZ_ECOLI : 1024- 1031: vsyna GytnVhe-L ipwrt NASA_KLEPN : 214- 221: apgsd GglfVgl-L naiaa NASA_KLEPN : 215- 221: pgsdg Glf-Vgl-L naiaa NASA_KLEPN : 325- 332: qpnam GgreVgg-L atmla NASA_KLEPN : 326- 332: pnamg Gre-Vgg-L atmla NASA_KLEPN : 743- 749: mqvae Ggk-Vwn-L lawra NASA_KLEPN : 743- 750: mqvae Ggk-VwnlL awrag NASC_BACSU : 286- 294: eqqtd GtaaVkgfL nmvli NASC_BACSU : 620- 628: iespr GsitVrskL seqir PHSA_SALTY : 374- 381: ynkla Gek-VaptL aklni PSRA_WOLSU : 229- 235: eaien Gak-Vvt-L eprls PSRA_WOLSU : 513- 521: psfgi GrqkVvepL gdakp PSRA_WOLSU : 719- 727: lfgyf GfghVskdL krayg TORA_ECOLI : 19- 27: flaql GgltVagmL gpsll TORA_ECOLI : 20- 27: laqlg Glt-VagmL gpsll L 12: 11.5102 68( 20) L-x(0,1)-A-x(0,1)-A Occurences: 68(20) BISC_ECOLI : 272- 274: akire L-A-A ifhqn BISC_ECOLI : 305- 307: wmivt L-A-A mlgqi BISC_ECOLI : 621- 625: sslre LyAvA nrepv BISC_ECOLI : 658- 661: argqi L-AgA viseg BISZ_ECOLI : 27- 31: tsaap LpAwA eekgg BISZ_ECOLI : 341- 344: vklae LmA-A nrtml BISZ_ECOLI : 371- 373: wmlvt L-A-A mlgqi BISZ_ECOLI : 777- 780: ipssq L-AnA cagns DMSA_ECOLI : 298- 302: ydekt LpAsA pkngh DMSA_ECOLI : 687- 690: gnvdv LkA-A crqem DMSA_HAEIN : 288- 291: gtdaa LvA-A layvm DMSA_HAEIN : 708- 711: gnvdv LkA-A npqev FDHA_METFO : 140- 142: ptvag L-A-A sfgsg FDHA_METFO : 435- 438: fadvv LpA-A cwaeq FDHF_ECOLI : 598- 600: gncaa L-A-A ladep FDHF_ECOLI : 598- 602: gncaa LaAlA depgy FDNG_ECOLI : 32- 35: apkqa L-AqA rnykl FDNG_ECOLI : 911- 915: tkhal LnAiA qpeqf FDNG_ECOLI : 927- 929: eiset L-A-A akgin FDNG_ECOLI : 927- 930: eiset LaA-A kginn FDNG_ECOLI : 927- 930: eiset L-AaA kginn FDOG_ECOLI : 164- 168: lstgm LcAsA ssnet FDXG_HAEIN : 32- 34: apanv L-A-A preyk FDXG_HAEIN : 933- 935: eigek L-A-A ekgiq NAPA_ALCEU : 25- 29: vagvt LpAgA anfvt NAPA_ALCEU : 520- 522: ptvta L-A-A dlvlp NAPA_ECOLI : 440- 444: pakig LhAvA qdral NAPA_ECOLI : 498- 500: ptvsa L-A-A dlilp NAPA_ECOLI : 732- 736: lfihp LdAkA rdlrr NARB_SYNP7 : 296- 299: aeltg L-AvA elvra NARB_SYNP7 : 307- 311: vraad LiAsA qrwls NARB_SYNP7 : 469- 472: yahll LpA-A qwsek NARB_SYNP7 : 549- 553: glshe LlAqA gpqqw NARB_SYNP7 : 550- 553: lshel L-AqA gpqqw NARB_SYNP7 : 713- 717: sgepe LkAcA vqiea NARG_BACSU : 272- 275: pdahf L-AeA rykga NARG_BACSU : 310- 313: gtdga L-AmA mghvi NARG_BACSU : 639- 641: adynv L-A-A rlgwl NARG_BACSU : 778- 781: ysdiv LpA-A twyek NARG_ECOLI : 168- 171: qevne LiA-A snvyt NARG_ECOLI : 347- 350: aagrm LrA-A dlvda NARG_ECOLI : 584- 587: tgwqp L-AfA ldwqr NARG_ECOLI : 801- 804: pfihp LsA-A vdpaw NARG_ECOLI : 1136- 1140: nsnga LtArA vvsqr NARZ_ECOLI : 133- 136: hsdpv L-AwA simnd NARZ_ECOLI : 168- 171: qelnq LiA-A anvwt NARZ_ECOLI : 168- 172: qelnq LiAaA nvwti NARZ_ECOLI : 305- 308: gtdsa L-AmA mghvi NARZ_ECOLI : 591- 594: tgwlp L-AfA ldwnr NARZ_ECOLI : 631- 634: ellsp L-AdA skysg NARZ_ECOLI : 808- 811: pfihp LsA-A vdpaw NARZ_ECOLI : 955- 958: asevi L-AlA petng NARZ_ECOLI : 1143- 1147: nanga LtArA vvsqr NASA_KLEPN : 176- 179: vlyqr L-AqA krdnp NASA_KLEPN : 206- 209: iadrh L-AlA pgsdg NASA_KLEPN : 221- 225: lfvgl LnAiA asrri NASA_KLEPN : 336- 338: glatm L-A-A hmnfe NASA_KLEPN : 370- 373: ltgle LfA-A igrge NASA_KLEPN : 472- 475: pagrg L-AsA lpgsi NASA_KLEPN : 658- 661: grvnn LlA-A vtdph NASA_KLEPN : 659- 661: rvnnl L-A-A vtdph NASA_KLEPN : 853- 856: pelka LlA-A nvaqa NASA_KLEPN : 854- 856: elkal L-A-A nvaqa NASC_BACSU : 467- 470: qiicd L-AsA lgkgr NASC_BACSU : 586- 588: rksaa L-A-A rhfes PHSA_SALTY : 158- 161: shlfh L-AtA fgspn PHSA_SALTY : 286- 289: sgfeq L-AqA vkett PHSA_SALTY : 316- 318: rvtre L-A-A capha PHSA_SALTY : 316- 320: rvtre LaAcA phaiv PSRA_WOLSU : 161- 164: twfhh L-AqA ygspn TORA_ECOLI : 299- 302: dvplq L-AlA htlys TORA_ECOLI : 391- 393: wmivv L-A-A mlgqi TORA_ECOLI : 802- 805: igtsq L-AqA tsaht M 13: 11.5102 33( 20) L-x(0,1)-A-x(3,4)-E Occurences: 33(20) BISC_ECOLI : 431- 438: hadiv LpAttsfE rndlt BISC_ECOLI : 621- 628: sslre LyAvanrE pvtih BISZ_ECOLI : 27- 33: tsaap LpAwae-E kggki DMSA_ECOLI : 567- 573: ewmrh LyAqsr-E aipel DMSA_ECOLI : 687- 694: gnvdv LkAacrqE mwinp DMSA_HAEIN : 708- 715: gnvdv LkAanpqE vwmnp FDHA_METFO : 88- 95: liask LgAydpnE igffc FDHA_METFO : 435- 442: fadvv LpAacwaE qegtf FDHF_ECOLI : 598- 604: gncaa LaAlad-E pgyaq FDHF_ECOLI : 598- 604: gncaa L-AaladE pgyaq FDNG_ECOLI : 911- 918: tkhal LnAiaqpE qfvei FDOG_ECOLI : 911- 918: tkhal LnAilqpE qfvei FDXG_HAEIN : 32- 37: apanv L-Aapr-E ykllr FDXG_HAEIN : 414- 421: ktmth LyAlgftE hsigt NAPA_ALCEU : 582- 588: vwppe LiAkkp-E ykgkt NAPA_ECOLI : 560- 566: vwped LlAkkp-E lrgkt NAPA_ECOLI : 561- 566: wpedl L-Akkp-E lrgkt NARB_SYNP7 : 469- 476: yahll LpAaqwsE ktgtm NARG_BACSU : 778- 785: ysdiv LpAatwyE khdls NARG_BACSU : 980- 985: lklkd L-Aeer-E eecft NARG_BACSU : 980- 986: lklkd L-AeereE ecftf NARG_ECOLI : 470- 476: vydlt L-AnyglE rglnd NARG_ECOLI : 977- 982: rdhth L-Alnk-E dekir NARZ_ECOLI : 955- 960: asevi L-Alap-E tnghv NARZ_ECOLI : 984- 989: rehth L-Alhk-E dekir NASA_KLEPN : 336- 343: glatm LaAhmnfE pddlr NASA_KLEPN : 683- 689: aiatw LpAwkg-E lfsrq NASA_KLEPN : 749- 756: gkvwn LlAwragE lmlgw NASA_KLEPN : 750- 756: kvwnl L-AwragE lmlgw NASC_BACSU : 425- 432: yadvi LpAssylE degtm NASC_BACSU : 586- 592: rksaa LaArhf-E sfmei NASC_BACSU : 586- 592: rksaa L-AarhfE sfmei PHSA_SALTY : 286- 292: sgfeq L-AqavkE ttpew PSRA_WOLSU : 32- 39: tipgt LgAlekqE ikgsa PSRA_WOLSU : 414- 419: dgeff L-Ankg-E givsl TORA_ECOLI : 525- 532: fadiv LpAttqfE rndld N 14: 11.5102 47( 20) L-x(1,2)-A-x(3,4)-E Occurences: 47(20) BISC_ECOLI : 213- 221: dvalm LgiAhtlvE ngwhd BISC_ECOLI : 403- 411: qdtnr LirAwqkpE lvvis BISC_ECOLI : 431- 438: hadiv Lp-AttsfE rndlt BISC_ECOLI : 555- 563: plahp LktAsgkiE ifsqr BISC_ECOLI : 621- 628: sslre Ly-AvanrE pvtih BISC_ECOLI : 658- 665: argqi LagAvis-E gikpg BISZ_ECOLI : 27- 33: tsaap Lp-Awae-E kggki BISZ_ECOLI : 99- 107: yldnp LqpAkgrgE dtyvq BISZ_ECOLI : 476- 484: qdtnr LikAwqkpE mivvs DMSA_ECOLI : 567- 573: ewmrh Ly-Aqsr-E aipel DMSA_ECOLI : 687- 694: gnvdv LkaAcrq-E mwinp DMSA_ECOLI : 687- 694: gnvdv Lk-AacrqE mwinp DMSA_HAEIN : 708- 715: gnvdv LkaAnpq-E vwmnp DMSA_HAEIN : 708- 715: gnvdv Lk-AanpqE vwmnp FDHA_METFO : 88- 95: liask Lg-AydpnE igffc FDHA_METFO : 435- 442: fadvv LpaAcwa-E qegtf FDHA_METFO : 435- 442: fadvv Lp-AacwaE qegtf FDHF_ECOLI : 598- 604: gncaa La-Alad-E pgyaq FDNG_ECOLI : 910- 918: wtkha LlnAiaqpE qfvei FDNG_ECOLI : 911- 918: tkhal Ln-AiaqpE qfvei FDOG_ECOLI : 910- 918: wtkha LlnAilqpE qfvei FDOG_ECOLI : 911- 918: tkhal Ln-AilqpE qfvei FDXG_HAEIN : 414- 421: ktmth Ly-AlgftE hsigt NAPA_ALCEU : 526- 533: aadlv LpsAmwv-E kegay NAPA_ALCEU : 582- 588: vwppe Li-Akkp-E ykgkt NAPA_ECOLI : 192- 199: adafv LwgAnma-E mhpil NAPA_ECOLI : 504- 511: aadli LptAmwv-E kegay NAPA_ECOLI : 560- 566: vwped Ll-Akkp-E lrgkt NARB_SYNP7 : 452- 460: spftv LqdAyhptE tttya NARB_SYNP7 : 468- 476: tyahl LlpAaqwsE ktgtm NARB_SYNP7 : 469- 476: yahll LpaAqws-E ktgtm NARB_SYNP7 : 469- 476: yahll Lp-AaqwsE ktgtm NARG_BACSU : 778- 785: ysdiv LpaAtwy-E khdls NARG_BACSU : 778- 785: ysdiv Lp-AatwyE khdls NARG_ECOLI : 352- 359: lraad LvdAlgq-E nnpew NARG_ECOLI : 468- 476: ttvyd LtlAnyglE rglnd NARG_ECOLI : 658- 665: lgtnp LtiAgea-E kagmn NARG_ECOLI : 778- 785: ysdii LptAtwy-E kddmn NARG_ECOLI : 937- 945: kgqpm LntAidaaE miltl NARZ_ECOLI : 785- 792: fsdiv LptAtwy-E kddmn NASA_KLEPN : 336- 343: glatm La-AhmnfE pddlr NASA_KLEPN : 370- 378: ltgle LfaAigrgE vkavw NASA_KLEPN : 683- 689: aiatw Lp-Awkg-E lfsrq NASA_KLEPN : 749- 756: gkvwn Ll-AwragE lmlgw NASC_BACSU : 274- 281: etsgm LftArgi-E qqtdg NASC_BACSU : 425- 432: yadvi Lp-AssylE degtm NASC_BACSU : 586- 592: rksaa La-Arhf-E sfmei PHSA_SALTY : 270- 277: mideq LydAsfv-E rytsg PHSA_SALTY : 609- 616: sgkie LysAtle-E llpgy PHSA_SALTY : 687- 694: gdeiw LenAtgk-E kgkal PSRA_WOLSU : 32- 39: tipgt Lg-AlekqE ikgsa TORA_ECOLI : 525- 532: fadiv Lp-AttqfE rndld O 15: 11.5102 66( 20) A-x(0,1)-A-x(2,3)-A Occurences: 66(20) BISC_ECOLI : 422- 427: ecfwt AaAkh-A divlp BISC_ECOLI : 422- 427: ecfwt A-AakhA divlp BISC_ECOLI : 423- 427: cfwta A-Akh-A divlp BISZ_ECOLI : 24- 29: lvvts A-AplpA waeek BISZ_ECOLI : 411- 416: dfsgp AiAgh-A seaad BISZ_ECOLI : 495- 500: ecywt AaAkh-A divlp BISZ_ECOLI : 495- 500: ecywt A-AakhA divlp BISZ_ECOLI : 496- 500: cywta A-Akh-A divlp BISZ_ECOLI : 577- 582: kffyd A-AqkgA raqrv BISZ_ECOLI : 780- 786: sqlan AcAgnsA lvyie DMSA_ECOLI : 14- 20: pfsri AhAvdsA iptks DMSA_ECOLI : 627- 632: eiysq AlAdi-A atwel DMSA_ECOLI : 627- 633: eiysq AlAdiaA twelp DMSA_HAEIN : 18- 23: vkass AgAal-A vsnlt DMSA_HAEIN : 251- 257: ycieq AkArsnA kmiii DMSA_HAEIN : 286- 290: rpgtd A-Alv-A alayv DMSA_HAEIN : 286- 291: rpgtd A-AlvaA layvm FDHA_METFO : 278- 283: iaiky AkAdk-A aivys FDHA_METFO : 278- 284: iaiky AkAdkaA ivysl FDHA_METFO : 437- 441: dvvlp A-Acw-A eqegt FDHF_ECOLI : 281- 286: seirq A-ArmyA qaksa FDHF_ECOLI : 286- 291: aarmy AqAks-A ailwg FDHF_ECOLI : 286- 292: aarmy AqAksaA ilwgm FDHF_ECOLI : 596- 600: mtgnc A-Ala-A ladep FDHF_ECOLI : 597- 602: tgnca AlAal-A depgy FDNG_ECOLI : 22- 27: agttv A-AlgfA pkqal FDOG_ECOLI : 21- 27: magtt AaAlgfA psval FDOG_ECOLI : 22- 27: agtta A-AlgfA psval FDOG_ECOLI : 267- 273: ftrta AvAdyyA pirsg FDOG_ECOLI : 640- 646: whwkg AdApgiA ltdge FDOG_ECOLI : 880- 886: ifkdd AeAlgkA dkfpy FDXG_HAEIN : 27- 33: amlgf ApAnvlA aprey NAPA_ALCEU : 16- 21: qtait AtAsv-A gvtlp NAPA_ALCEU : 144- 149: ekgpt AvAcs-A paqwt NAPA_ALCEU : 314- 318: hplqk A-Akn-A sdpga NAPA_ECOLI : 442- 448: kiglh AvAqdrA lkdgk NARB_SYNP7 : 304- 309: aelvr A-AdliA saqrw NARB_SYNP7 : 426- 431: gflwv A-AtnpA vslpd NARB_SYNP7 : 524- 529: fdytd AaAvf-A eyvqv NARB_SYNP7 : 524- 529: fdytd A-AavfA eyvqv NARB_SYNP7 : 525- 529: dytda A-Avf-A eyvqv NARB_SYNP7 : 580- 586: tkhhf AyAdgrA rfqpf NARG_BACSU : 802- 807: fihpf ApAis-A pwesk NARG_ECOLI : 303- 308: kqgtd A-AmalA gippr NARG_ECOLI : 329- 334: actrh AdAgd-A grtgg NARG_ECOLI : 803- 808: ihpls A-AvdpA weaks NARG_ECOLI : 849- 853: iqhds A-Ael-A qpldv NARZ_ECOLI : 424- 429: lgqhd AvAgv-A fpyfg NARZ_ECOLI : 669- 674: plgik AeAdk-A glspt NARZ_ECOLI : 810- 815: ihpls A-AvdpA wesrs NASA_KLEPN : 272- 276: yrefi A-Apr-A itlyt NASA_KLEPN : 511- 516: dwris A-AtwiA lepvr NASA_KLEPN : 785- 790: vppqn A-ArahA llsgr NASA_KLEPN : 855- 859: lkall A-Anv-A qa NASC_BACSU : 123- 127: rlcms A-Aat-A anqtf NASC_BACSU : 123- 128: rlcms AaAta-A nqtfg NASC_BACSU : 123- 128: rlcms A-AataA nqtfg NASC_BACSU : 124- 128: lcmsa A-Ata-A nqtfg NASC_BACSU : 262- 267: vdirk A-AvkfA ketsg NASC_BACSU : 584- 588: qtrks A-Ala-A rhfes PHSA_SALTY : 18- 23: gigcs AcAlg-A fppga PHSA_SALTY : 127- 132: ayqei A-AkmnA ikaqh PHSA_SALTY : 298- 302: ttpew A-Aaq-A dvpad PHSA_SALTY : 300- 306: pewaa AqAdvpA dvivr PHSA_SALTY : 318- 323: trela AcAph-A ivspg PHSA_SALTY : 719- 724: gfgak AgAkt-A atthg PHSA_SALTY : 719- 725: gfgak AgAktaA tthgi PSRA_WOLSU : 14- 19: dflks AgAag-A aglvw PSRA_WOLSU : 14- 20: dflks AgAagaA glvws PSRA_WOLSU : 16- 20: lksag A-Aga-A glvws PSRA_WOLSU : 320- 326: laref AkAapkA ifdfg PSRA_WOLSU : 322- 326: refak A-Apk-A ifdfg TORA_ECOLI : 37- 42: ltprr AtAaq-A atdav TORA_ECOLI : 37- 43: ltprr AtAaqaA tdavi TORA_ECOLI : 39- 43: prrat A-Aqa-A tdavi TORA_ECOLI : 40- 46: rrata AqAatdA viske TORA_ECOLI : 42- 46: ataaq A-Atd-A viske TORA_ECOLI : 803- 808: gtsql AqAts-A httlv P 16: 11.5102 59( 20) A-x(2,3)-A-x(0,1)-A Occurences: 59(20) BISC_ECOLI : 255- 259: giakt Aew-A-A eicgv BISC_ECOLI : 712- 718: lgngc AgntAlA wleky BISZ_ECOLI : 25- 31: vvtsa AplpAwA eekgg BISZ_ECOLI : 321- 325: ntpks Avw-A-A eitgv BISZ_ECOLI : 339- 344: qivkl AelmA-A nrtml BISZ_ECOLI : 416- 420: aiagh Ase-A-A ddggm BISZ_ECOLI : 578- 584: ffyda AqkgArA qrvtm DMSA_ECOLI : 629- 633: ysqal Adi-A-A twelp DMSA_HAEIN : 15- 20: rdfvk Ass-AgA alavs DMSA_HAEIN : 18- 23: vkass Aga-AlA vsnlt DMSA_HAEIN : 286- 291: rpgtd AalvA-A layvm DMSA_HAEIN : 287- 291: pgtda Alv-A-A layvm DMSA_HAEIN : 287- 293: pgtda AlvaAlA yvmiq FDHA_METFO : 138- 142: hgptv Agl-A-A sfgsg FDHA_METFO : 274- 280: virdi AikyAkA dkaai FDHA_METFO : 280- 284: ikyak Adk-A-A ivysl FDHF_ECOLI : 282- 288: eirqa ArmyAqA ksaai FDHF_ECOLI : 288- 292: rmyaq Aks-A-A ilwgm FDHF_ECOLI : 596- 600: mtgnc Aal-A-A ladep FDHF_ECOLI : 596- 602: mtgnc AalaAlA depgy FDHF_ECOLI : 597- 602: tgnca Ala-AlA depgy FDHF_ECOLI : 689- 694: rvepi AdqrA-A eqyvi FDNG_ECOLI : 27- 33: aalgf ApkqAlA qarny FDNG_ECOLI : 909- 915: twtkh AllnAiA qpeqf FDOG_ECOLI : 17- 22: caggm AgttA-A algfa FDOG_ECOLI : 17- 23: caggm AgttAaA lgfap FDOG_ECOLI : 27- 33: aalgf ApsvAlA etrqy FDOG_ECOLI : 68- 73: slgdg Akn-AkA sifhi FDXG_HAEIN : 17- 22: caggm AgtsA-A mlgfa FDXG_HAEIN : 29- 34: lgfap AnvlA-A preyk NAPA_ALCEU : 13- 18: fikqt Ait-AtA svagv NAPA_ALCEU : 146- 151: gptav Acs-ApA qwtvw NAPA_ALCEU : 183- 187: arhcm Asa-A-A gfmrt NAPA_ECOLI : 5- 10: mpvs Acr-AvA ravvg NARB_SYNP7 : 305- 311: elvra AdliAsA qrwls NARG_BACSU : 269- 275: trtpd AhflAeA rykga NARG_BACSU : 621- 626: pisdl AspiA-A ssryk NARG_BACSU : 663- 668: dlyke Aek-AgA atped NARG_BACSU : 943- 947: pnise Akq-A-A eailt NARG_BACSU : 943- 949: pnise AkqaAeA iltls NARG_ECOLI : 303- 308: kqgtd Aam-AlA gippr NARG_ECOLI : 493- 499: yddvk AytpAwA eqitg NARG_ECOLI : 940- 944: pmlnt Aid-A-A emilt NARG_ECOLI : 959- 964: tngqv Avk-AwA alsef NARG_ECOLI : 1135- 1140: fnsng Alt-ArA vvsqr NARZ_ECOLI : 1142- 1147: fnang Alt-ArA vvsqr NASA_KLEPN : 333- 338: evggl AtmlA-A hmnfe NASA_KLEPN : 785- 790: vppqn Aar-AhA llsgr NASA_KLEPN : 817- 823: svger AigeAiA ggcrs NASA_KLEPN : 852- 856: ipelk All-A-A nvaqa NASA_KLEPN : 855- 861: lkall AanvAqA NASA_KLEPN : 856- 861: kalla Anv-AqA NASC_BACSU : 123- 128: rlcms AaatA-A nqtfg NASC_BACSU : 124- 128: lcmsa Aat-A-A nqtfg NASC_BACSU : 584- 588: qtrks Aal-A-A rhfes PHSA_SALTY : 176- 181: astcp Agk-AiA akvmm PHSA_SALTY : 721- 725: gakag Akt-A-A tthgi PSRA_WOLSU : 14- 19: dflks Aga-AgA aglvw PSRA_WOLSU : 16- 20: lksag Aag-A-A glvws PSRA_WOLSU : 316- 322: tikrl ArefAkA apkai TORA_ECOLI : 37- 42: ltprr Ata-AqA atdav TORA_ECOLI : 39- 43: prrat Aaq-A-A tdavi TORA_ECOLI : 359- 364: tirgl ArqmA-A nrtqi Q 17: 11.5102 46( 20) T-x(2,3)-A-x(2,3)-A Occurences: 46(20) BISC_ECOLI : 154- 161: anpln TlkiAwn-A sdeqg BISC_ECOLI : 234- 241: flarc TtgyAvf-A syllg BISC_ECOLI : 235- 241: larct Tgy-Avf-A syllg BISC_ECOLI : 421- 427: secfw Taa-Akh-A divlp BISZ_ECOLI : 22- 29: galvv Tsa-AplpA waeek BISZ_ECOLI : 317- 324: gksdn TpksAvw-A aeitg BISZ_ECOLI : 317- 325: gksdn TpksAvwaA eitgv BISZ_ECOLI : 494- 500: secyw Taa-Akh-A divlp DMSA_ECOLI : 488- 494: idchm Tss-Aky-A dillp DMSA_HAEIN : 284- 290: pirpg Tda-Alv-A alayv DMSA_HAEIN : 284- 291: pirpg Tda-AlvaA layvm FDHA_METFO : 198- 204: adpry Tpt-Akq-A dqyip FDHA_METFO : 214- 221: pfktg Tdv-AlmnA mmnvi FDHA_METFO : 425- 431: qdifm Tdt-Aef-A dvvlp FDHF_ECOLI : 433- 439: qdifm Tkt-Asa-A dvilp FDHF_ECOLI : 592- 599: scrsm TgncAal-A alade FDHF_ECOLI : 592- 600: scrsm TgncAalaA ladep FDNG_ECOLI : 19- 27: ggmag TtvaAlgfA pkqal FDNG_ECOLI : 20- 27: gmagt Tva-AlgfA pkqal FDNG_ECOLI : 263- 269: vdprf Trt-Asv-A diyap FDNG_ECOLI : 265- 273: prftr TasvAdiyA pirsg FDNG_ECOLI : 906- 913: hfhtw Tkh-AllnA iaqpe FDOG_ECOLI : 19- 27: ggmag TtaaAlgfA psval FDOG_ECOLI : 20- 27: gmagt Taa-AlgfA psval FDOG_ECOLI : 263- 269: drscf Trt-Aav-A dyyap FDOG_ECOLI : 265- 273: scftr TaavAdyyA pirsg FDOG_ECOLI : 706- 712: aladi Tdp-Atg-A vivkk FDOG_ECOLI : 906- 913: hfhyw Tkh-AllnA ilqpe FDXG_HAEIN : 272- 280: prfnr TasvAdlhA pirsg NAPA_ALCEU : 15- 21: kqtai Tat-Asv-A gvtlp NAPA_ALCEU : 24- 30: svagv Tlp-Aga-A nfvtd NAPA_ALCEU : 143- 149: kekgp Tav-Acs-A paqwt NAPA_ALCEU : 516- 522: sdayp Tvt-Ala-A dlvlp NAPA_ECOLI : 494- 500: sdpyp Tvs-Ala-A dlilp NARB_SYNP7 : 229- 235: vdprc Tpt-Aev-A dlhla NARB_SYNP7 : 522- 529: fafdy TdaaAvf-A eyvqv NARB_SYNP7 : 522- 529: fafdy Tda-AavfA eyvqv NARG_BACSU : 266- 273: vpltr Tpd-AhflA earyk NARG_BACSU : 306- 313: sirqg Tdg-AlamA mghvi NARG_ECOLI : 281- 288: ktvav TpdyAei-A klcdl NARG_ECOLI : 301- 308: apkqg Tda-AmalA gippr NARZ_ECOLI : 301- 308: apkqg Tds-AlamA mghvi NASA_KLEPN : 556- 562: qptra Ttv-Asi-A ilnad NASC_BACSU : 580- 587: ltgvq TrksAal-A arhfe NASC_BACSU : 580- 588: ltgvq TrksAalaA rhfes PHSA_SALTY : 173- 179: fthas Tcp-Agk-A iaakv PHSA_SALTY : 294- 302: avket TpewAaaqA dvpad PHSA_SALTY : 313- 320: vivrv TrelAac-A phaiv PSRA_WOLSU : 176- 184: fghes TcplAynmA grdvf TORA_ECOLI : 33- 40: gpsll TprrAta-A qaatd TORA_ECOLI : 38- 46: tprra TaaqAatdA viske R 18: 11.5102 40( 20) L-x(3,4)-G-x(2,3)-S Occurences: 40(20) BISC_ECOLI : 442- 449: fernd Ltmt-Gdy-S nqhlv BISZ_ECOLI : 515- 522: fernd Ltmt-Gdy-S nqhiv DMSA_ECOLI : 125- 133: tnmqr LikeyGne-S iylny DMSA_ECOLI : 169- 176: ccggy Lnhy-Gdy-S saqia DMSA_ECOLI : 169- 177: ccggy Lnhy-GdysS aqiae DMSA_ECOLI : 511- 519: qmdfa LdascGnm-S yvifn DMSA_HAEIN : 189- 196: ciggy Lnhy-Gdy-S taqia FDHA_METFO : 161- 169: fedad LifsiGan-S leahp FDHF_ECOLI : 375- 384: wgves LpahtGyriS elphr FDNG_ECOLI : 454- 461: sniqg Ltdl-Gll-S tslpg FDNG_ECOLI : 713- 722: dangv LiakkGqllS sfahl FDNG_ECOLI : 727- 735: ssfah Lrdd-GttaS scwiy FDNG_ECOLI : 992- 1001: yiant LtpnvGdanS qtpey FDOG_ECOLI : 454- 461: sniqg Ltdl-Gll-S qslpg FDOG_ECOLI : 727- 734: ssfaq Lrdd-Gtt-S cgcwi FDXG_HAEIN : 99- 106: vsrga Lcpk-Gag-S ldyvn FDXG_HAEIN : 733- 741: ngfah Lrdd-GtttS gnwly NAPA_ALCEU : 81- 90: evnkg LncvkGyflS kimyg NAPA_ALCEU : 164- 171: yaaak Lyka-Gfr-S nnidp NAPA_ALCEU : 551- 560: qfwhq LvdapGearS dlwql NAPA_ECOLI : 116- 123: kfkta Lkek-Gpe-S igmfg NAPA_ECOLI : 143- 150: yaask Lfka-Gfr-S nnidp NAPA_ECOLI : 371- 379: nlvyn LhlltGki-S qpgcg NARB_SYNP7 : 317- 325: qrwls Lwsm-GvnqS iqgta NARB_SYNP7 : 347- 354: trqig Lpgc-Gpf-S ltgqp NARG_BACSU : 639- 648: adynv LaarlGwlpS yptfn NARG_BACSU : 921- 930: deyes LkqrlGeitS dsvak NARG_ECOLI : 206- 215: sgary LsligGtclS fydwy NARZ_ECOLI : 206- 215: agtry LsllgGtclS fydwy NARZ_ECOLI : 295- 303: lcdqw LapkqGtd-S alama NARZ_ECOLI : 908- 916: plmdk Lgng-GkgiS wntqd NASA_KLEPN : 279- 287: prait Lytm-GinqS asgsd NASA_KLEPN : 683- 692: aiatw LpawkGelfS rqpvp NASC_BACSU : 563- 572: tadyp LylttGrvmS hyltg PHSA_SALTY : 9- 17: srrsf Lqgv-GigcS acalg PSRA_WOLSU : 567- 574: dllak Lkkd-Gsa-S fgvpl TORA_ECOLI : 154- 162: hgpsa LltasGwq-S tgmfh TORA_ECOLI : 155- 162: gpsal Ltas-Gwq-S tgmfh TORA_ECOLI : 424- 432: rkgvi LsgfsGst-S ippvh TORA_ECOLI : 536- 543: fernd Ldqy-Gnh-S nrgii TORA_ECOLI : 641- 648: redpd Lepl-Gtp-S gliei S 19: 11.5102 41( 20) D-x(2,4)-L-x(4)-G Occurences: 41(20) BISC_ECOLI : 646- 655: giqdg Dtvr-LwnarG qilag BISZ_ECOLI : 96- 104: rksyl Dnp--LqpakG rgedt BISZ_ECOLI : 548- 557: fdvfa Dlae-LlkpgG keiyt DMSA_ECOLI : 336- 346: tgvpa DkiikLareiG stkpa DMSA_ECOLI : 508- 516: aseqm Dfa--LdascG nmsyv DMSA_HAEIN : 560- 570: crpiy DmlsdLaekmG vkekf FDHA_METFO : 158- 166: yasfe Dad--LifsiG ansle FDHF_ECOLI : 165- 174: ainei Dntd-LvfvfG ynpad FDNG_ECOLI : 708- 718: ledly DangvLiakkG qllss FDNG_ECOLI : 758- 767: nrdns Dpsg-LgntlG wawaw FDNG_ECOLI : 793- 803: ngkpw DpkrmLiqwnG skwtg FDOG_ECOLI : 758- 767: rrdna Dpsg-LgntlG wawaw FDOG_ECOLI : 793- 803: qgnpw DpkrqLlkwdG tkwtg FDXG_HAEIN : 714- 724: ledly DpngnLmykkG qllng FDXG_HAEIN : 764- 773: nrdns Dpsg-LgctiG wgfaw FDXG_HAEIN : 799- 809: ngnpw DknrqLikwnG knwnw NAPA_ALCEU : 755- 764: fmhpe Daka-LglrrG vevev NAPA_ECOLI : 690- 700: aaeap DeeydLwlstG rvleh NARB_SYNP7 : 17- 27: tplmi DtaktLcpycG vgcgl NARB_SYNP7 : 236- 244: taeva Dlh--LalkpG sdval NARB_SYNP7 : 246- 254: lkpgs Dva--LlnglG wllyq NARB_SYNP7 : 601- 611: vaepp DdrypLvltvG rlypd NARB_SYNP7 : 602- 611: aeppd Dryp-LvltvG rlypd NARG_BACSU : 297- 305: sskfa Ddw--LsirqG tdgal NARG_BACSU : 307- 315: irqgt Dga--LamamG hvilq NARG_BACSU : 635- 644: ykhha Dynv-LaarlG wlpsy NARG_BACSU : 848- 858: tpllh DtmqeLaqpfG kindw NARG_BACSU : 916- 926: swsia DeyesLkqrlG eitsd NARG_BACSU : 1042- 1050: qsyyv Dhe--LmmefG etmat NARG_BACSU : 1096- 1106: hsmyf DslpmLtlfrG gptvw NARG_ECOLI : 292- 300: iaklc Dlw--LapkqG tdaam NARG_ECOLI : 1095- 1103: hstys Dnl--LmltlG rggpv NARG_ECOLI : 1095- 1105: hstys DnllmLtlgrG gpvvw NARZ_ECOLI : 292- 300: vaklc Dqw--LapkqG tdsal NARZ_ECOLI : 302- 310: pkqgt Dsa--LamamG hvilk NARZ_ECOLI : 1102- 1112: hstys DnllmLtlsrG gpivw NASA_KLEPN : 203- 211: tcdia Drh--LalapG sdggl NASC_BACSU : 194- 202: ttkia Dlh--LkikpG tdaal NASC_BACSU : 560- 568: ekpta Dyp--LylttG rvmsh PHSA_SALTY : 683- 692: giktg Deiw-LenatG kekgk PSRA_WOLSU : 551- 559: wkdie Dyr--LqqvdG dldll TORA_ECOLI : 640- 649: fredp Dlep-LgtpsG lieiy T 20: 11.5102 31( 20) A-D-x(1,3)-L Occurences: 31(20) BISC_ECOLI : 427- 431: aaakh ADiv-L patts BISZ_ECOLI : 500- 504: aaakh ADiv-L pitts BISZ_ECOLI : 547- 552: dfdvf ADlaeL lkpgg BISZ_ECOLI : 666- 671: ewkgt ADekqL qllta DMSA_ECOLI : 494- 497: ssaky ADi--L lpdct DMSA_ECOLI : 494- 498: ssaky ADil-L pdcta DMSA_HAEIN : 139- 142: altei ADa--L krnik FDHA_METFO : 431- 435: dtaef ADvv-L paacw FDHF_ECOLI : 439- 443: ktasa ADvi-L pstsw FDNG_ECOLI : 385- 388: cgtpk ADf--L kvcev FDOG_ECOLI : 757- 762: arrdn ADpsgL gntlg FDXG_HAEIN : 538- 541: dflpk ADr--L ydpit NAPA_ALCEU : 208- 213: ddfea ADafvL wgsnm NAPA_ALCEU : 522- 526: vtala ADlv-L psamw NAPA_ECOLI : 187- 192: ddieq ADafvL wganm NAPA_ECOLI : 500- 504: vsala ADli-L ptamw NARB_SYNP7 : 189- 192: edldl ADc--L livgs NARB_SYNP7 : 189- 193: edldl ADcl-L ivgsn NARB_SYNP7 : 235- 239: ptaev ADlh-L alkpg NARG_BACSU : 296- 300: esskf ADdw-L sirqg NARG_BACSU : 634- 639: rykhh ADynvL aarlg NARG_ECOLI : 1114- 1119: vwlse ADakdL giadn NARZ_ECOLI : 671- 676: gikae ADkagL sptef NASA_KLEPN : 202- 206: atcdi ADrh-L alapg NASC_BACSU : 134- 138: nqtfg ADrg-L tnpls NASC_BACSU : 193- 197: attki ADlh-L kikpg NASC_BACSU : 329- 332: ehgqk ADq--L pgyrs NASC_BACSU : 421- 425: etaky ADvi-L passy NASC_BACSU : 559- 563: kekpt ADyp-L ylttg PHSA_SALTY : 214- 219: egiev ADtheL mtaqe PHSA_SALTY : 473- 476: esaay ADy--L lpect PHSA_SALTY : 473- 477: esaay ADyl-L pecty PSRA_WOLSU : 484- 488: dtawf ADvv-L pdtty TORA_ECOLI : 521- 525: stcrf ADiv-L pattq Number of patterns evaluated by Pratt:14964 Total running time: 52 seconds