------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 5 sequences from file MOCF_BIOSYNTHESIS_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 5 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename MOCF_BIOSYNTHESIS_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CIN_DROME 601 GEPH_RAT 736 MOAB_ECOLI 169 MOG_ECOLI 195 MOG_HAEIN 197 Pratt run started at Thu Feb 6 20:17:32 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 37.5305 5( 5) L-x-T-G-G-T-G-x(4)-D-x(2)-P-x-A 2: 33.3604 5( 5) T-G-G-T-G-x(4)-D-x(2)-P-x-A 3: 29.1904 5( 5) G-G-T-G-x(4)-D-x(2)-P-x-A 4: 25.0203 5( 5) G-T-G-x(4)-D-x(2)-P-x-A 5: 24.0203 5( 5) T-G-x-T-x(0,1)-G-x(1,2)-A-x(5)-P 6: 20.8503 5( 5) L-I-x(3)-P-G-x(2)-K 7: 20.3503 5( 5) T-x(0,1)-G-x(3)-R-D-x(4)-A 8: 19.8503 5( 5) T-x(1,2)-T-x(3,4)-R-x-V-x(3)-A 9: 19.8503 5( 5) G-x(1,2)-T-x(3,4)-R-x-V-x(3)-A 10: 19.8503 5( 5) L-T-x-G-x(2,4)-A-x(5)-P 11: 19.8503 5( 5) L-x(0,1)-T-x-G-x(2,3)-A-x(5)-P 12: 19.8503 5( 5) G-x-T-x(0,1)-G-x(1,2)-A-x(5)-P 13: 19.8503 5( 5) T-x-G-x(3,5)-R-D-x(4)-A 14: 19.3503 5( 5) G-x-T-x(1,2)-A-x-R-x(0,2)-T 15: 19.3503 5( 5) T-x(3,4)-R-x-V-x(3)-A-x(0,2)-T 16: 19.3503 5( 5) V-x(2)-T-x(0,1)-G-G-x(1,3)-G 17: 16.6802 5( 5) I-x(3)-P-G-x(2)-K 18: 16.6802 5( 5) G-x(3)-R-D-x(4)-A 19: 16.1802 5( 5) T-x-G-x(2,3)-A-x(5)-P 20: 15.6802 5( 5) I-F-x(0,1)-A-x(1,2)-P Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 82.3614 5( 5) L-x-T-G-G-T-G-x-[AT]-x(2)-D-x-[AT]-P-[DE]-A-x(3)-[LV]-x-[DE]-[KR]-E-x-[EP]-[GQ]-[FLM]-[AGS]-x(2)-[FIM]-x(3)-S-[FIL] B 2: 78.1913 5( 5) T-G-G-T-G-x-[AT]-x(2)-D-x-[AT]-P-[DE]-A-x(3)-[LV]-x-[DE]-[KR]-E-x-[EP]-[GQ]-[FLM]-[AGS]-x(2)-[FIM]-x(3)-S-[FIL] C 3: 74.0213 5( 5) G-G-T-G-x-[AT]-x(2)-D-x-[AT]-P-[DE]-A-x(3)-[LV]-x-[DE]-[KR]-E-x-[EP]-[GQ]-[FLM]-[AGS]-x(2)-[FIM]-x(3)-S-[FIL] D 4: 69.8512 5( 5) G-T-G-x-[AT]-x(2)-D-x-[AT]-P-[DE]-A-x(3)-[LV]-x-[DE]-[KR]-E-x-[EP]-[GQ]-[FLM]-[AGS]-x(2)-[FIM]-x(3)-S-[FIL] E 5: 59.4311 5( 5) T-[GS]-G-x(3,5)-R-D-[SV]-[AT]-[PQ]-[DE]-A-[GT]-x(2)-[LV]-[AILV]-[DE]-[KR]-[AE]-x-[PV]-x(2)-[AGNS] F 6: 59.1901 5( 5) L-I-[FIL]-[AN]-[LM]-P-G-[QS]-x-K-[AGS]-x(2)-[ET]-[ACT]-x-[EQ]-x-[IV]-x-[ADP]-x(2)-[GLP]-x-[AV]-x(3)-[GILP] G 7: 56.7506 5( 5) T-x(0,1)-G-x(3)-R-D-[SV]-[AT]-[PQ]-[DE]-A-[GT]-x(2)-[LV]-[AILV]-[DE]-[KR]-[AE]-x-[PV]-x(2)-[AGNS] H 8: 56.4906 5( 5) L-I-x-[AN]-[LM]-P-G-[QS]-x-K-[AGS]-x(2)-[ET]-[ACT]-x-[EQ]-x-[IV]-x-[ADP]-x(2)-[GLP]-x-[AV]-x(3)-[GILP] I 9: 55.0201 5( 5) I-[FIL]-[AN]-[LM]-P-G-[QS]-x-K-[AGS]-x(2)-[ET]-[ACT]-x-[EQ]-x-[IV]-x-[ADP]-x(2)-[GLP]-x-[AV]-x(3)-[GILP] J 10: 54.8839 5( 5) T-G-[GL]-T-x(0,1)-G-x(1,2)-A-x-[ER]-[AD]-[LV]-x-P-x(2)-[DT]-x-[AEQ]-[LV]-x-[DEG]-x-[EG]-x-[PV] K 11: 53.2216 5( 5) L-I-x(2)-[LM]-P-G-[QS]-x-K-[AGS]-x(2)-[ET]-[ACT]-x-[EQ]-x-[IV]-x-[ADP]-x(2)-[GLP]-x-[AV]-x(3)-[GILP] L 12: 53.0805 5( 5) G-x(3)-R-D-[SV]-[AT]-[PQ]-[DE]-A-[GT]-x(2)-[LV]-[AILV]-[DE]-[KR]-[AE]-x-[PV]-x(2)-[AGNS] M 13: 51.7136 5( 5) T-G-x-T-x(0,1)-G-x(1,2)-A-x-[ER]-[AD]-[LV]-x-P-x(2)-[DT]-x-[AEQ]-[LV]-x-[DEG]-x-[EG]-x-[PV] N 14: 50.7721 5( 5) L-x(0,1)-T-[EG]-G-x(2,3)-A-x-[ER]-[AD]-[LV]-x-P-x(2)-[DT]-x-[AEQ]-[LV]-x-[DEG]-x-[EG]-x-[PV] O 15: 50.7186 5( 5) L-T-[ET]-G-x(2,4)-A-x-[ER]-[AD]-[LV]-x-P-x(2)-[DT]-x-[AEQ]-[LV]-x-[DEG]-x-[EG]-x-[PV] P 16: 50.7138 5( 5) G-[GL]-T-x(0,1)-G-x(1,2)-A-x-[ER]-[AD]-[LV]-x-P-x(2)-[DT]-x-[AEQ]-[LV]-x-[DEG]-x-[EG]-x-[PV] Q 17: 50.3513 5( 5) G-[GS]-T-x(1,2)-A-x-R-x(0,2)-T-[AP]-x-[AE]-[NT]-x(2)-[ALV]-[AILP]-[DEQ]-x-[DE]-x(2)-[GQT]-x-[AGPS]-x(2)-[FIM] R 18: 49.6547 5( 5) L-I-x(3)-P-G-[QS]-x-K-[AGS]-x(2)-[ET]-[ACT]-x-[EQ]-x-[IV]-x-[ADP]-x(2)-[GLP]-x-[AV]-x(3)-[GILP] S 19: 47.5435 5( 5) L-T-x-G-x(2,4)-A-x-[ER]-[AD]-[LV]-x-P-x(2)-[DT]-x-[AEQ]-[LV]-x-[DEG]-x-[EG]-x-[PV] T 20: 47.5435 5( 5) L-x(0,1)-T-x-G-x(2,3)-A-x-[ER]-[AD]-[LV]-x-P-x(2)-[DT]-x-[AEQ]-[LV]-x-[DEG]-x-[EG]-x-[PV] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 82.3614 5( 5) L-x-T-G-G-T-G-x-[AT]-x(2)-D-x-[AT]-P-[DE]-A-x(3)-[LV]-x-[DE]-[KR]-E-x-[EP]-[GQ]-[FLM]-[AGS]-x(2)-[FIM]-x(3)-S-[FIL] Occurences: 5(5) CIN_DROME : 70- 107: elrvi LtTGGTGfAprDvTPEAtrqLlEKEcPQLSmyItleSI kqtqy GEPH_RAT : 83- 120: elnli LtTGGTGfAprDvTPEAtkeViEREaPGMAlaMlmgSL nvtpl MOAB_ECOLI : 73- 110: dvqvv LiTGGTGlTegDqAPEAllpLfDREvEGFGevFrmlSF eeigt MOG_ECOLI : 71- 108: schlv LtTGGTGpArrDvTPDAtlaVaDREmPGFGeqMrqiSL hfvpt MOG_HAEIN : 72- 109: gchlv LtTGGTGpAkrDvTPDAtlaVaDREmPGFGeqMrqvSL hfvpt B 2: 78.1913 5( 5) T-G-G-T-G-x-[AT]-x(2)-D-x-[AT]-P-[DE]-A-x(3)-[LV]-x-[DE]-[KR]-E-x-[EP]-[GQ]-[FLM]-[AGS]-x(2)-[FIM]-x(3)-S-[FIL] Occurences: 5(5) CIN_DROME : 72- 107: rvilt TGGTGfAprDvTPEAtrqLlEKEcPQLSmyItleSI kqtqy GEPH_RAT : 85- 120: nlilt TGGTGfAprDvTPEAtkeViEREaPGMAlaMlmgSL nvtpl MOAB_ECOLI : 75- 110: qvvli TGGTGlTegDqAPEAllpLfDREvEGFGevFrmlSF eeigt MOG_ECOLI : 73- 108: hlvlt TGGTGpArrDvTPDAtlaVaDREmPGFGeqMrqiSL hfvpt MOG_HAEIN : 74- 109: hlvlt TGGTGpAkrDvTPDAtlaVaDREmPGFGeqMrqvSL hfvpt C 3: 74.0213 5( 5) G-G-T-G-x-[AT]-x(2)-D-x-[AT]-P-[DE]-A-x(3)-[LV]-x-[DE]-[KR]-E-x-[EP]-[GQ]-[FLM]-[AGS]-x(2)-[FIM]-x(3)-S-[FIL] Occurences: 5(5) CIN_DROME : 73- 107: viltt GGTGfAprDvTPEAtrqLlEKEcPQLSmyItleSI kqtqy GEPH_RAT : 86- 120: liltt GGTGfAprDvTPEAtkeViEREaPGMAlaMlmgSL nvtpl MOAB_ECOLI : 76- 110: vvlit GGTGlTegDqAPEAllpLfDREvEGFGevFrmlSF eeigt MOG_ECOLI : 74- 108: lvltt GGTGpArrDvTPDAtlaVaDREmPGFGeqMrqiSL hfvpt MOG_HAEIN : 75- 109: lvltt GGTGpAkrDvTPDAtlaVaDREmPGFGeqMrqvSL hfvpt D 4: 69.8512 5( 5) G-T-G-x-[AT]-x(2)-D-x-[AT]-P-[DE]-A-x(3)-[LV]-x-[DE]-[KR]-E-x-[EP]-[GQ]-[FLM]-[AGS]-x(2)-[FIM]-x(3)-S-[FIL] Occurences: 5(5) CIN_DROME : 74- 107: ilttg GTGfAprDvTPEAtrqLlEKEcPQLSmyItleSI kqtqy GEPH_RAT : 87- 120: ilttg GTGfAprDvTPEAtkeViEREaPGMAlaMlmgSL nvtpl MOAB_ECOLI : 77- 110: vlitg GTGlTegDqAPEAllpLfDREvEGFGevFrmlSF eeigt MOG_ECOLI : 75- 108: vlttg GTGpArrDvTPDAtlaVaDREmPGFGeqMrqiSL hfvpt MOG_HAEIN : 76- 109: vlttg GTGpAkrDvTPDAtlaVaDREmPGFGeqMrqvSL hfvpt E 5: 59.4311 5( 5) T-[GS]-G-x(3,5)-R-D-[SV]-[AT]-[PQ]-[DE]-A-[GT]-x(2)-[LV]-[AILV]-[DE]-[KR]-[AE]-x-[PV]-x(2)-[AGNS] Occurences: 5(5) CIN_DROME : 72- 99: rvilt TGGtgfapRDVTPEATrqLLEKEcPqlS myitl GEPH_RAT : 85- 112: nlilt TGGtgfapRDVTPEATkeVIEREaPgmA lamlm MOAB_ECOLI : 27- 52: geedd TSGhyl--RDSAQEAGhhVVDKAiVkeN ryair MOG_ECOLI : 73- 100: hlvlt TGGtgparRDVTPDATlaVADREmPgfG eqmrq MOG_HAEIN : 74- 101: hlvlt TGGtgpakRDVTPDATlaVADREmPgfG eqmrq F 6: 59.1901 5( 5) L-I-[FIL]-[AN]-[LM]-P-G-[QS]-x-K-[AGS]-x(2)-[ET]-[ACT]-x-[EQ]-x-[IV]-x-[ADP]-x(2)-[GLP]-x-[AV]-x(3)-[GILP] Occurences: 5(5) CIN_DROME : 127- 156: iagnt LILNLPGSeKAvkECfQtIsAllPhAvhlI gddvs GEPH_RAT : 140- 169: irgkt LIINLPGSkKGsqECfQfIlPalPhAidlL rdaiv MOAB_ECOLI : 131- 160: vankt LIFAMPGStKAcrTAwEnIiApqLdArtrP cnfhp MOG_ECOLI : 128- 157: irkqa LILNLPGQpKSikETlEgVkDaeGnVvvhG ifasv MOG_HAEIN : 129- 158: irkes LILNLPGQpKAikETlEgVkDkeGnVlvkG ifsav G 7: 56.7506 5( 5) T-x(0,1)-G-x(3)-R-D-[SV]-[AT]-[PQ]-[DE]-A-[GT]-x(2)-[LV]-[AILV]-[DE]-[KR]-[AE]-x-[PV]-x(2)-[AGNS] Occurences: 5(5) CIN_DROME : 75- 99: lttgg T-GfapRDVTPEATrqLLEKEcPqlS myitl GEPH_RAT : 88- 112: lttgg T-GfapRDVTPEATkeVIEREaPgmA lamlm MOAB_ECOLI : 27- 52: geedd TsGhylRDSAQEAGhhVVDKAiVkeN ryair MOG_ECOLI : 76- 100: lttgg T-GparRDVTPDATlaVADREmPgfG eqmrq MOG_HAEIN : 77- 101: lttgg T-GpakRDVTPDATlaVADREmPgfG eqmrq H 8: 56.4906 5( 5) L-I-x-[AN]-[LM]-P-G-[QS]-x-K-[AGS]-x(2)-[ET]-[ACT]-x-[EQ]-x-[IV]-x-[ADP]-x(2)-[GLP]-x-[AV]-x(3)-[GILP] Occurences: 5(5) CIN_DROME : 127- 156: iagnt LIlNLPGSeKAvkECfQtIsAllPhAvhlI gddvs GEPH_RAT : 140- 169: irgkt LIiNLPGSkKGsqECfQfIlPalPhAidlL rdaiv MOAB_ECOLI : 131- 160: vankt LIfAMPGStKAcrTAwEnIiApqLdArtrP cnfhp MOG_ECOLI : 128- 157: irkqa LIlNLPGQpKSikETlEgVkDaeGnVvvhG ifasv MOG_HAEIN : 129- 158: irkes LIlNLPGQpKAikETlEgVkDkeGnVlvkG ifsav I 9: 55.0201 5( 5) I-[FIL]-[AN]-[LM]-P-G-[QS]-x-K-[AGS]-x(2)-[ET]-[ACT]-x-[EQ]-x-[IV]-x-[ADP]-x(2)-[GLP]-x-[AV]-x(3)-[GILP] Occurences: 5(5) CIN_DROME : 128- 156: agntl ILNLPGSeKAvkECfQtIsAllPhAvhlI gddvs GEPH_RAT : 141- 169: rgktl IINLPGSkKGsqECfQfIlPalPhAidlL rdaiv MOAB_ECOLI : 132- 160: anktl IFAMPGStKAcrTAwEnIiApqLdArtrP cnfhp MOG_ECOLI : 129- 157: rkqal ILNLPGQpKSikETlEgVkDaeGnVvvhG ifasv MOG_HAEIN : 130- 158: rkesl ILNLPGQpKAikETlEgVkDkeGnVlvkG ifsav J 10: 54.8839 5( 5) T-G-[GL]-T-x(0,1)-G-x(1,2)-A-x-[ER]-[AD]-[LV]-x-P-x(2)-[DT]-x-[AEQ]-[LV]-x-[DEG]-x-[EG]-x-[PV] Occurences: 5(5) CIN_DROME : 72- 96: rvilt TGGT-Gf-ApRDVtPeaTrQLlEkEcP qlsmy GEPH_RAT : 85- 109: nlilt TGGT-Gf-ApRDVtPeaTkEViErEaP gmala MOAB_ECOLI : 78- 104: litgg TGLTeGdqApEALlPlfDrEVeGfGeV frmls MOG_ECOLI : 73- 97: hlvlt TGGT-Gp-ArRDVtPdaTlAVaDrEmP gfgeq MOG_HAEIN : 74- 98: hlvlt TGGT-Gp-AkRDVtPdaTlAVaDrEmP gfgeq K 11: 53.2216 5( 5) L-I-x(2)-[LM]-P-G-[QS]-x-K-[AGS]-x(2)-[ET]-[ACT]-x-[EQ]-x-[IV]-x-[ADP]-x(2)-[GLP]-x-[AV]-x(3)-[GILP] Occurences: 5(5) CIN_DROME : 127- 156: iagnt LIlnLPGSeKAvkECfQtIsAllPhAvhlI gddvs GEPH_RAT : 140- 169: irgkt LIinLPGSkKGsqECfQfIlPalPhAidlL rdaiv MOAB_ECOLI : 131- 160: vankt LIfaMPGStKAcrTAwEnIiApqLdArtrP cnfhp MOG_ECOLI : 128- 157: irkqa LIlnLPGQpKSikETlEgVkDaeGnVvvhG ifasv MOG_HAEIN : 129- 158: irkes LIlnLPGQpKAikETlEgVkDkeGnVlvkG ifsav L 12: 53.0805 5( 5) G-x(3)-R-D-[SV]-[AT]-[PQ]-[DE]-A-[GT]-x(2)-[LV]-[AILV]-[DE]-[KR]-[AE]-x-[PV]-x(2)-[AGNS] Occurences: 5(5) CIN_DROME : 76- 99: ttggt GfapRDVTPEATrqLLEKEcPqlS myitl GEPH_RAT : 89- 112: ttggt GfapRDVTPEATkeVIEREaPgmA lamlm MOAB_ECOLI : 29- 52: eddts GhylRDSAQEAGhhVVDKAiVkeN ryair MOG_ECOLI : 77- 100: ttggt GparRDVTPDATlaVADREmPgfG eqmrq MOG_HAEIN : 78- 101: ttggt GpakRDVTPDATlaVADREmPgfG eqmrq M 13: 51.7136 5( 5) T-G-x-T-x(0,1)-G-x(1,2)-A-x-[ER]-[AD]-[LV]-x-P-x(2)-[DT]-x-[AEQ]-[LV]-x-[DEG]-x-[EG]-x-[PV] Occurences: 5(5) CIN_DROME : 72- 96: rvilt TGgT-Gf-ApRDVtPeaTrQLlEkEcP qlsmy GEPH_RAT : 85- 109: nlilt TGgT-Gf-ApRDVtPeaTkEViErEaP gmala MOAB_ECOLI : 78- 104: litgg TGlTeGdqApEALlPlfDrEVeGfGeV frmls MOG_ECOLI : 73- 97: hlvlt TGgT-Gp-ArRDVtPdaTlAVaDrEmP gfgeq MOG_HAEIN : 74- 98: hlvlt TGgT-Gp-AkRDVtPdaTlAVaDrEmP gfgeq N 14: 50.7721 5( 5) L-x(0,1)-T-[EG]-G-x(2,3)-A-x-[ER]-[AD]-[LV]-x-P-x(2)-[DT]-x-[AEQ]-[LV]-x-[DEG]-x-[EG]-x-[PV] Occurences: 5(5) CIN_DROME : 70- 96: elrvi LtTGGtgfApRDVtPeaTrQLlEkEcP qlsmy GEPH_RAT : 83- 109: elnli LtTGGtgfApRDVtPeaTkEViErEaP gmala MOAB_ECOLI : 80- 104: tggtg L-TEGdq-ApEALlPlfDrEVeGfGeV frmls MOG_ECOLI : 71- 97: schlv LtTGGtgpArRDVtPdaTlAVaDrEmP gfgeq MOG_HAEIN : 72- 98: gchlv LtTGGtgpAkRDVtPdaTlAVaDrEmP gfgeq O 15: 50.7186 5( 5) L-T-[ET]-G-x(2,4)-A-x-[ER]-[AD]-[LV]-x-P-x(2)-[DT]-x-[AEQ]-[LV]-x-[DEG]-x-[EG]-x-[PV] Occurences: 5(5) CIN_DROME : 70- 96: elrvi LTTGgtgfApRDVtPeaTrQLlEkEcP qlsmy GEPH_RAT : 83- 109: elnli LTTGgtgfApRDVtPeaTkEViErEaP gmala MOAB_ECOLI : 80- 104: tggtg LTEGdq--ApEALlPlfDrEVeGfGeV frmls MOG_ECOLI : 71- 97: schlv LTTGgtgpArRDVtPdaTlAVaDrEmP gfgeq MOG_HAEIN : 72- 98: gchlv LTTGgtgpAkRDVtPdaTlAVaDrEmP gfgeq P 16: 50.7138 5( 5) G-[GL]-T-x(0,1)-G-x(1,2)-A-x-[ER]-[AD]-[LV]-x-P-x(2)-[DT]-x-[AEQ]-[LV]-x-[DEG]-x-[EG]-x-[PV] Occurences: 5(5) CIN_DROME : 73- 96: viltt GGT-Gf-ApRDVtPeaTrQLlEkEcP qlsmy GEPH_RAT : 86- 109: liltt GGT-Gf-ApRDVtPeaTkEViErEaP gmala MOAB_ECOLI : 79- 104: itggt GLTeGdqApEALlPlfDrEVeGfGeV frmls MOG_ECOLI : 74- 97: lvltt GGT-Gp-ArRDVtPdaTlAVaDrEmP gfgeq MOG_HAEIN : 75- 98: lvltt GGT-Gp-AkRDVtPdaTlAVaDrEmP gfgeq Q 17: 50.3513 5( 5) G-[GS]-T-x(1,2)-A-x-R-x(0,2)-T-[AP]-x-[AE]-[NT]-x(2)-[ALV]-[AILP]-[DEQ]-x-[DE]-x(2)-[GQT]-x-[AGPS]-x(2)-[FIM] Occurences: 5(5) CIN_DROME : 73- 102: viltt GGTgfApRdvTPeATrqLLEkEcpQlSmyI tlesi GEPH_RAT : 86- 115: liltt GGTgfApRdvTPeATkeVIErEapGmAlaM lmgsl MOAB_ECOLI : 137- 163: ifamp GSTk-AcR--TAwENiiAPQlDarTrPcnF hphlk MOG_ECOLI : 74- 103: lvltt GGTgpArRdvTPdATlaVADrEmpGfGeqM rqisl MOG_HAEIN : 75- 104: lvltt GGTgpAkRdvTPdATlaVADrEmpGfGeqM rqvsl R 18: 49.6547 5( 5) L-I-x(3)-P-G-[QS]-x-K-[AGS]-x(2)-[ET]-[ACT]-x-[EQ]-x-[IV]-x-[ADP]-x(2)-[GLP]-x-[AV]-x(3)-[GILP] Occurences: 5(5) CIN_DROME : 127- 156: iagnt LIlnlPGSeKAvkECfQtIsAllPhAvhlI gddvs GEPH_RAT : 140- 169: irgkt LIinlPGSkKGsqECfQfIlPalPhAidlL rdaiv MOAB_ECOLI : 131- 160: vankt LIfamPGStKAcrTAwEnIiApqLdArtrP cnfhp MOG_ECOLI : 128- 157: irkqa LIlnlPGQpKSikETlEgVkDaeGnVvvhG ifasv MOG_HAEIN : 129- 158: irkes LIlnlPGQpKAikETlEgVkDkeGnVlvkG ifsav S 19: 47.5435 5( 5) L-T-x-G-x(2,4)-A-x-[ER]-[AD]-[LV]-x-P-x(2)-[DT]-x-[AEQ]-[LV]-x-[DEG]-x-[EG]-x-[PV] Occurences: 5(5) CIN_DROME : 70- 96: elrvi LTtGgtgfApRDVtPeaTrQLlEkEcP qlsmy GEPH_RAT : 83- 109: elnli LTtGgtgfApRDVtPeaTkEViErEaP gmala MOAB_ECOLI : 80- 104: tggtg LTeGdq--ApEALlPlfDrEVeGfGeV frmls MOG_ECOLI : 71- 97: schlv LTtGgtgpArRDVtPdaTlAVaDrEmP gfgeq MOG_HAEIN : 72- 98: gchlv LTtGgtgpAkRDVtPdaTlAVaDrEmP gfgeq T 20: 47.5435 5( 5) L-x(0,1)-T-x-G-x(2,3)-A-x-[ER]-[AD]-[LV]-x-P-x(2)-[DT]-x-[AEQ]-[LV]-x-[DEG]-x-[EG]-x-[PV] Occurences: 5(5) CIN_DROME : 70- 96: elrvi LtTgGtgfApRDVtPeaTrQLlEkEcP qlsmy GEPH_RAT : 83- 109: elnli LtTgGtgfApRDVtPeaTkEViErEaP gmala MOAB_ECOLI : 80- 104: tggtg L-TeGdq-ApEALlPlfDrEVeGfGeV frmls MOG_ECOLI : 71- 97: schlv LtTgGtgpArRDVtPdaTlAVaDrEmP gfgeq MOG_HAEIN : 72- 98: gchlv LtTgGtgpAkRDVtPdaTlAVaDrEmP gfgeq Number of patterns evaluated by Pratt:5782 Total running time: 3 seconds