------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 13 sequences from file MGMT PATTERN CONSERVATION: CM: min Nr of Seqs to Match 13 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename MGMT.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: ADAB_BACSU 179 ADA_ECOLI 354 ADA_SALTY 352 DAT1_BACSU 165 MGMT_BOVIN 9 MGMT_CRIGR 209 MGMT_HUMAN 207 MGMT_MOUSE 210 MGMT_RAT 208 MGMT_YEAST 206 OGT_ECOLI 171 OGT_HAEIN 190 OGT_SALTY 115 Pratt run started at Thu Feb 6 20:17:17 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 8.3401 19( 13) P-C 2: 8.3401 17( 13) I-x(2)-P 3: 8.3401 20( 13) I-P 4: 7.8401 34( 13) P-x(2,3)-L 5: 7.3401 47( 13) L-x(1,3)-P 6: 7.3401 26( 13) I-x(0,2)-L 7: 7.3401 47( 13) P-x(1,3)-L 8: 7.3401 48( 13) P-x(0,2)-L 9: 7.3401 40( 13) P-x(3,5)-P 10: 7.3401 31( 13) P-x(2,4)-I Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 11.5644 13( 13) I-x(2)-P-[CT] B 2: 11.1596 17( 13) P-x(2,4)-I-x(2)-[ENPST]-[ACGNS] C 3: 8.3401 19( 13) P-C D 4: 8.3401 20( 13) I-P E 5: 7.8401 34( 13) P-x(2,3)-L F 6: 7.3401 47( 13) L-x(1,3)-P G 7: 7.3401 26( 13) I-x(0,2)-L H 8: 7.3401 47( 13) P-x(1,3)-L I 9: 7.3401 48( 13) P-x(0,2)-L J 10: 7.3401 40( 13) P-x(3,5)-P Best patterns with alignements: fitness hits(seqs) Pattern A 1: 11.5644 13( 13) I-x(2)-P-[CT] Occurences: 13(13) ADAB_BACSU : 137- 141: anpvl ItvPC hrvig ADA_ECOLI : 317- 321: ankla IiiPC hrvvr ADA_SALTY : 296- 300: qlaat IgkPT avrav DAT1_BACSU : 126- 130: rndlp IfvPC hrvig MGMT_BOVIN : 5- 9: npip IltPC MGMT_CRIGR : 145- 149: nnpvp IliPC hrvic MGMT_HUMAN : 141- 145: gnpvp IliPC hrvvc MGMT_MOUSE : 144- 148: snpvp IliPC hrvvr MGMT_RAT : 144- 148: snpvp IliPC hrvir MGMT_YEAST : 145- 149: diakr IgkPT aarsv OGT_ECOLI : 135- 139: snpis IvvPC hrvig OGT_HAEIN : 137- 141: snpis IiiPC hrilg OGT_SALTY : 79- 83: anpis IvvPC hrvig B 2: 11.1596 17( 13) P-x(2,4)-I-x(2)-[ENPST]-[ACGNS] Occurences: 17(13) ADAB_BACSU : 134- 141: aigan Pvl--ItvPC hrvig ADAB_BACSU : 140- 149: vlitv PchrvIgkNG sltgy ADA_ECOLI : 263- 270: tpltl Pld--IrgTA fqqqv ADA_SALTY : 262- 269: vllsl Pld--IqgTA fqqqv DAT1_BACSU : 129- 138: lpifv PchrvIgkNS altgy MGMT_BOVIN : 2- 9: n Pip--IltPC MGMT_CRIGR : 142- 149: amrnn Pvp--IliPC hrvic MGMT_CRIGR : 148- 157: vpili PchrvIcsNG signy MGMT_HUMAN : 138- 145: amrgn Pvp--IliPC hrvvc MGMT_MOUSE : 141- 148: amrsn Pvp--IliPC hrvvr MGMT_RAT : 14- 22: tvlds Plgk-IelSG cergl MGMT_RAT : 141- 148: amrsn Pvp--IliPC hrvir MGMT_YEAST : 168- 176: lallv Pchr-IvgSN rkltg OGT_ECOLI : 132- 139: angsn Pis--IvvPC hrvig OGT_ECOLI : 138- 147: isivv PchrvIgrNG tmtgy OGT_HAEIN : 134- 141: avgsn Pis--IiiPC hrilg OGT_SALTY : 76- 83: angan Pis--IvvPC hrvig C 3: 8.3401 19( 13) P-C Occurences: 19(13) ADAB_BACSU : 140- 141: vlitv PC hrvig ADA_ECOLI : 68- 69: aagfr PC krcqp ADA_ECOLI : 283- 284: alrti PC getvs ADA_ECOLI : 320- 321: laiii PC hrvvr ADA_SALTY : 67- 68: dagfr PC krcqp ADA_SALTY : 282- 283: alcai PC getvs ADA_SALTY : 319- 320: lamvi PC hrvvr DAT1_BACSU : 129- 130: lpifv PC hrvig MGMT_BOVIN : 8- 9: ipilt PC MGMT_CRIGR : 148- 149: vpili PC hrvic MGMT_HUMAN : 144- 145: vpili PC hrvvc MGMT_MOUSE : 147- 148: vpili PC hrvvr MGMT_RAT : 147- 148: vpili PC hrvir MGMT_YEAST : 168- 169: lallv PC hrivg OGT_ECOLI : 101- 102: tlrti PC gqvmh OGT_ECOLI : 138- 139: isivv PC hrvig OGT_HAEIN : 140- 141: isiii PC hrilg OGT_SALTY : 45- 46: alrai PC grsct OGT_SALTY : 82- 83: isivv PC hrvig D 4: 8.3401 20( 13) I-P Occurences: 20(13) ADAB_BACSU : 102- 103: nalce IP ygqtk ADA_ECOLI : 282- 283: qalrt IP cgetv ADA_ECOLI : 319- 320: klaii IP chrvv ADA_SALTY : 281- 282: qalca IP cgetv ADA_SALTY : 318- 319: klamv IP chrvv DAT1_BACSU : 91- 92: qaler IP ygesr MGMT_BOVIN : 3- 4: np IP iltpc MGMT_CRIGR : 147- 148: pvpil IP chrvi MGMT_CRIGR : 179- 180: laheg IP trqpa MGMT_HUMAN : 143- 144: pvpil IP chrvv MGMT_MOUSE : 146- 147: pvpil IP chrvv MGMT_MOUSE : 178- 179: laheg IP tgqpa MGMT_RAT : 146- 147: pvpil IP chrvi MGMT_RAT : 178- 179: laheg IP tgqpa MGMT_YEAST : 109- 110: lpsga IP feflf OGT_ECOLI : 100- 101: ktlrt IP cgqvm OGT_HAEIN : 82- 83: ecfsn IP lkpeg OGT_HAEIN : 139- 140: pisii IP chril OGT_HAEIN : 170- 171: lqlek IP yidkg OGT_SALTY : 44- 45: qalra IP cgrsc E 5: 7.8401 34( 13) P-x(2,3)-L Occurences: 34(13) ADAB_BACSU : 38- 42: gsqnk PieeL fewar ADAB_BACSU : 51- 54: arkrf Pgs-L lvedd ADAB_BACSU : 51- 55: arkrf PgslL veddd ADA_ECOLI : 99- 102: leqet Pvt-L ealad ADA_ECOLI : 113- 116: qvams Pfh-L hrlfk ADA_ECOLI : 237- 240: aadna Pad-L mfqqh ADA_ECOLI : 259- 262: nqrdt Plt-L pldir ADA_SALTY : 98- 101: leqet Pvt-L aflaq ADA_SALTY : 112- 115: avams Pfh-L hrlfk ADA_SALTY : 236- 240: sarhe PadaL fqqrv DAT1_BACSU : 10- 14: ttaet PlgeL iiaee MGMT_BOVIN : 2- 6: n PipiL tpc MGMT_CRIGR : 50- 53: eapas Pel-L ggped MGMT_CRIGR : 56- 59: ellgg Ped-L peslv MGMT_CRIGR : 60- 63: gpedl Pes-L vqctt MGMT_CRIGR : 84- 88: ategl PlpaL hhpvf MGMT_CRIGR : 142- 146: amrnn PvpiL ipchr MGMT_HUMAN : 15- 19: ttlds PlgkL elsgc MGMT_HUMAN : 49- 53: vevpa PaavL ggpep MGMT_HUMAN : 56- 59: avlgg Pep-L mqcta MGMT_HUMAN : 80- 84: aieef PvpaL hhpvf MGMT_HUMAN : 138- 142: amrgn PvpiL ipchr MGMT_MOUSE : 49- 52: eapat Pev-L ggpeg MGMT_MOUSE : 59- 62: gpegv Pep-L vqcta MGMT_MOUSE : 83- 87: ategl PlpaL hhpvf MGMT_MOUSE : 141- 145: amrsn PvpiL ipchr MGMT_RAT : 49- 52: eapac Pev-L ggpeg MGMT_RAT : 59- 62: gpegv Pep-L vqcta MGMT_RAT : 83- 87: ategl PlpaL hhpvf MGMT_RAT : 141- 145: amrsn PvpiL ipchr MGMT_YEAST : 110- 114: psgai PfefL fgtdf OGT_ECOLI : 12- 16: ekiat PlgpL wvicd OGT_ECOLI : 59- 62: isatn Pgg-L sdklr OGT_HAEIN : 23- 27: tyyps PvgrL lilsd OGT_SALTY : 3- 6: tn Pgg-L sdkla F 6: 7.3401 47( 13) L-x(1,3)-P Occurences: 47(13) ADAB_BACSU : 62- 64: edddk Le--P yavei ADAB_BACSU : 99- 103: avwna LceiP ygqtk ADAB_BACSU : 136- 140: ganpv LitvP chrvi ADA_ECOLI : 17- 21: rwqsv LardP nadge ADA_ECOLI : 260- 263: qrdtp Ltl-P ldirg ADA_ECOLI : 279- 283: qvwqa LrtiP cgetv ADA_SALTY : 228- 230: aelht Lf--P sarhe ADA_SALTY : 258- 262: ntrdv LlslP ldiqg ADA_SALTY : 259- 262: trdvl Lsl-P ldiqg ADA_SALTY : 278- 282: qvwqa LcaiP cgetv DAT1_BACSU : 88- 92: kvwqa LeriP ygesr MGMT_BOVIN : 6- 8: npipi Lt--P c MGMT_CRIGR : 52- 56: paspe LlggP edlpe MGMT_CRIGR : 53- 56: aspel Lgg-P edlpe MGMT_CRIGR : 83- 86: aateg Lpl-P alhhp MGMT_CRIGR : 88- 91: lplpa Lhh-P vfqqd MGMT_CRIGR : 124- 128: qqlaa LagnP kaara MGMT_CRIGR : 146- 148: npvpi Li--P chrvi MGMT_CRIGR : 196- 198: ltgtr Lk--P sggst MGMT_HUMAN : 12- 15: mkrtt Lds-P lgkle MGMT_HUMAN : 53- 56: apaav Lgg-P eplmq MGMT_HUMAN : 84- 87: fpvpa Lhh-P vfqqe MGMT_HUMAN : 120- 124: qqlaa LagnP kaara MGMT_HUMAN : 142- 144: npvpi Li--P chrvv MGMT_HUMAN : 176- 179: heghr Lgk-P glggs MGMT_MOUSE : 11- 14: mkysv Lds-P lgkme MGMT_MOUSE : 52- 55: atpev Lgg-P egvpe MGMT_MOUSE : 82- 85: aateg Lpl-P alhhp MGMT_MOUSE : 87- 90: lplpa Lhh-P vfqqd MGMT_MOUSE : 123- 127: qqlaa LagnP kaara MGMT_MOUSE : 145- 147: npvpi Li--P chrvv MGMT_RAT : 11- 14: mkytv Lds-P lgkie MGMT_RAT : 52- 55: acpev Lgg-P egvpe MGMT_RAT : 82- 85: aateg Lpl-P alhhp MGMT_RAT : 87- 90: lplpa Lhh-P vfqqd MGMT_RAT : 123- 127: qqlaa LagnP kaara MGMT_RAT : 145- 147: npvpi Li--P chrvi MGMT_RAT : 195- 197: ligsw Lk--P sfess MGMT_YEAST : 14- 17: grifd Lng-P tmkel MGMT_YEAST : 165- 168: snnla Llv-P chriv MGMT_YEAST : 166- 168: nnlal Lv--P chriv OGT_ECOLI : 13- 15: kiatp Lg--P lwvic OGT_ECOLI : 97- 101: evwkt LrtiP cgqvm OGT_ECOLI : 115- 118: qlaeq Lgr-P gaara OGT_HAEIN : 84- 86: fsnip Lk--P egtaf OGT_HAEIN : 167- 171: rfllq LekiP yidkg OGT_SALTY : 41- 45: evwqa LraiP cgrsc G 7: 7.3401 26( 13) I-x(0,2)-L Occurences: 26(13) ADAB_BACSU : 39- 42: sqnkp IeeL fewar ADA_ECOLI : 154- 155: svtts I--L nagfp ADA_ECOLI : 213- 214: rgica I--L lgddd ADA_ECOLI : 213- 215: rgica Il-L gddda ADA_ECOLI : 223- 226: ddatl IseL qqmfp ADA_ECOLI : 250- 253: hvrev IasL nqrdt ADA_SALTY : 212- 213: rgica I--L pgdsd DAT1_BACSU : 23- 26: eeedr ItrL flsqe MGMT_BOVIN : 3- 6: np IpiL tpc MGMT_BOVIN : 5- 6: npip I--L tpc MGMT_CRIGR : 19- 21: splgk Ie-L cgcer MGMT_CRIGR : 31- 34: rglhg IrfL sgktp MGMT_CRIGR : 145- 146: nnpvp I--L ipchr MGMT_HUMAN : 31- 33: qglhe Ik-L lgkgt MGMT_HUMAN : 31- 34: qglhe IklL gkgts MGMT_HUMAN : 141- 142: gnpvp I--L ipchr MGMT_MOUSE : 30- 32: rglhg Ir-L lsgkt MGMT_MOUSE : 30- 33: rglhg IrlL sgktp MGMT_MOUSE : 144- 145: snpvp I--L ipchr MGMT_RAT : 18- 20: splgk Ie-L sgcer MGMT_RAT : 30- 33: rglhg IrfL sgktp MGMT_RAT : 144- 145: snpvp I--L ipchr MGMT_YEAST : 11- 14: iengr IfdL ngptm MGMT_YEAST : 96- 98: ienyt Ic-L enkmp OGT_ECOLI : 77- 80: gnlsi IdtL ptatg OGT_HAEIN : 29- 30: vgrll I--L sdges OGT_HAEIN : 82- 84: ecfsn Ip-L kpegt OGT_HAEIN : 144- 145: ipchr I--L gkdrt OGT_SALTY : 21- 24: gnlav IdtL etatg H 8: 7.3401 47( 13) P-x(1,3)-L Occurences: 47(13) ADAB_BACSU : 6- 8: metnk Pt--L ywsll ADAB_BACSU : 38- 42: gsqnk PieeL fewar ADAB_BACSU : 51- 54: arkrf Pgs-L lvedd ADAB_BACSU : 51- 55: arkrf PgslL veddd ADAB_BACSU : 134- 136: aigan Pv--L itvpc ADA_ECOLI : 99- 102: leqet Pvt-L ealad ADA_ECOLI : 113- 116: qvams Pfh-L hrlfk ADA_ECOLI : 237- 240: aadna Pad-L mfqqh ADA_ECOLI : 259- 262: nqrdt Plt-L pldir ADA_SALTY : 98- 101: leqet Pvt-L aflaq ADA_SALTY : 112- 115: avams Pfh-L hrlfk ADA_SALTY : 236- 240: sarhe PadaL fqqrv DAT1_BACSU : 10- 14: ttaet PlgeL iiaee DAT1_BACSU : 49- 51: ehket Pn--L aeakq MGMT_BOVIN : 2- 6: n PipiL tpc MGMT_BOVIN : 4- 6: npi Pi--L tpc MGMT_CRIGR : 50- 52: eapas Pe--L lggpe MGMT_CRIGR : 50- 53: eapas Pel-L ggped MGMT_CRIGR : 56- 59: ellgg Ped-L peslv MGMT_CRIGR : 60- 63: gpedl Pes-L vqctt MGMT_CRIGR : 84- 88: ategl PlpaL hhpvf MGMT_CRIGR : 86- 88: eglpl Pa--L hhpvf MGMT_CRIGR : 142- 146: amrnn PvpiL ipchr MGMT_CRIGR : 144- 146: rnnpv Pi--L ipchr MGMT_HUMAN : 15- 19: ttlds PlgkL elsgc MGMT_HUMAN : 49- 53: vevpa PaavL ggpep MGMT_HUMAN : 56- 59: avlgg Pep-L mqcta MGMT_HUMAN : 80- 84: aieef PvpaL hhpvf MGMT_HUMAN : 82- 84: eefpv Pa--L hhpvf MGMT_HUMAN : 138- 142: amrgn PvpiL ipchr MGMT_HUMAN : 140- 142: rgnpv Pi--L ipchr MGMT_HUMAN : 179- 181: hrlgk Pg--L ggssg MGMT_MOUSE : 49- 52: eapat Pev-L ggpeg MGMT_MOUSE : 59- 62: gpegv Pep-L vqcta MGMT_MOUSE : 83- 87: ategl PlpaL hhpvf MGMT_MOUSE : 85- 87: eglpl Pa--L hhpvf MGMT_MOUSE : 141- 145: amrsn PvpiL ipchr MGMT_MOUSE : 143- 145: rsnpv Pi--L ipchr MGMT_RAT : 49- 52: eapac Pev-L ggpeg MGMT_RAT : 59- 62: gpegv Pep-L vqcta MGMT_RAT : 83- 87: ategl PlpaL hhpvf MGMT_RAT : 85- 87: eglpl Pa--L hhpvf MGMT_RAT : 141- 145: amrsn PvpiL ipchr MGMT_RAT : 143- 145: rsnpv Pi--L ipchr MGMT_YEAST : 110- 114: psgai PfefL fgtdf OGT_ECOLI : 12- 16: ekiat PlgpL wvicd OGT_ECOLI : 59- 62: isatn Pgg-L sdklr OGT_HAEIN : 23- 27: tyyps PvgrL lilsd OGT_SALTY : 3- 6: tn Pgg-L sdkla I 9: 7.3401 48( 13) P-x(0,2)-L Occurences: 48(13) ADAB_BACSU : 6- 8: metnk Pt-L ywsll ADAB_BACSU : 51- 54: arkrf PgsL lvedd ADAB_BACSU : 134- 136: aigan Pv-L itvpc ADA_ECOLI : 99- 102: leqet PvtL ealad ADA_ECOLI : 113- 116: qvams PfhL hrlfk ADA_ECOLI : 237- 240: aadna PadL mfqqh ADA_ECOLI : 259- 260: nqrdt P--L tlpld ADA_ECOLI : 259- 262: nqrdt PltL pldir ADA_ECOLI : 263- 264: tpltl P--L dirgt ADA_SALTY : 98- 101: leqet PvtL aflaq ADA_SALTY : 112- 115: avams PfhL hrlfk ADA_SALTY : 262- 263: vllsl P--L diqgt DAT1_BACSU : 10- 11: ttaet P--L gelii DAT1_BACSU : 49- 51: ehket Pn-L aeakq DAT1_BACSU : 72- 73: ktfsl P--L sqkgt MGMT_BOVIN : 4- 6: npi Pi-L tpc MGMT_CRIGR : 15- 16: tvfhs P--L gkiel MGMT_CRIGR : 50- 52: eapas Pe-L lggpe MGMT_CRIGR : 50- 53: eapas PelL ggped MGMT_CRIGR : 56- 59: ellgg PedL peslv MGMT_CRIGR : 60- 63: gpedl PesL vqctt MGMT_CRIGR : 84- 85: ategl P--L palhh MGMT_CRIGR : 86- 88: eglpl Pa-L hhpvf MGMT_CRIGR : 144- 146: rnnpv Pi-L ipchr MGMT_HUMAN : 15- 16: ttlds P--L gklel MGMT_HUMAN : 56- 59: avlgg PepL mqcta MGMT_HUMAN : 58- 59: lggpe P--L mqcta MGMT_HUMAN : 82- 84: eefpv Pa-L hhpvf MGMT_HUMAN : 140- 142: rgnpv Pi-L ipchr MGMT_HUMAN : 179- 181: hrlgk Pg-L ggssg MGMT_MOUSE : 14- 15: svlds P--L gkmel MGMT_MOUSE : 49- 52: eapat PevL ggpeg MGMT_MOUSE : 59- 62: gpegv PepL vqcta MGMT_MOUSE : 61- 62: egvpe P--L vqcta MGMT_MOUSE : 83- 84: ategl P--L palhh MGMT_MOUSE : 85- 87: eglpl Pa-L hhpvf MGMT_MOUSE : 143- 145: rsnpv Pi-L ipchr MGMT_RAT : 14- 15: tvlds P--L gkiel MGMT_RAT : 49- 52: eapac PevL ggpeg MGMT_RAT : 59- 62: gpegv PepL vqcta MGMT_RAT : 61- 62: egvpe P--L vqcta MGMT_RAT : 83- 84: ategl P--L palhh MGMT_RAT : 85- 87: eglpl Pa-L hhpvf MGMT_RAT : 143- 145: rsnpv Pi-L ipchr MGMT_YEAST : 103- 104: lenkm P--L psgai OGT_ECOLI : 12- 13: ekiat P--L gplwv OGT_ECOLI : 15- 16: atplg P--L wvicd OGT_ECOLI : 59- 62: isatn PggL sdklr OGT_HAEIN : 83- 84: cfsni P--L kpegt OGT_SALTY : 3- 6: tn PggL sdkla J 10: 7.3401 40( 13) P-x(3,5)-P Occurences: 40(13) ADAB_BACSU : 134- 140: aigan PvlitvP chrvi ADA_ECOLI : 68- 74: aagfr PckrcqP ekana ADA_ECOLI : 231- 237: lqqmf PaadnaP adlmf ADA_ECOLI : 259- 263: nqrdt Pltl--P ldirg ADA_SALTY : 67- 73: dagfr PckrcqP dnara ADA_SALTY : 230- 236: lhtlf PsarheP adalf DAT1_BACSU : 125- 129: krndl Pifv--P chrvi MGMT_BOVIN : 2- 8: n PipiltP c MGMT_BOVIN : 4- 8: npi Pilt--P c MGMT_CRIGR : 39- 43: lsgkt Pssd--P keapa MGMT_CRIGR : 43- 47: tpssd Pkea--P aspel MGMT_CRIGR : 50- 56: eapas PellggP edlpe MGMT_CRIGR : 56- 60: ellgg Pedl--P eslvq MGMT_CRIGR : 86- 91: eglpl Palhh-P vfqqd MGMT_CRIGR : 142- 148: amrnn PvpiliP chrvi MGMT_CRIGR : 144- 148: rnnpv Pili--P chrvi MGMT_CRIGR : 180- 184: ahegi Ptrq--P ackdl MGMT_HUMAN : 82- 87: eefpv Palhh-P vfqqe MGMT_HUMAN : 138- 144: amrgn PvpiliP chrvv MGMT_HUMAN : 140- 144: rgnpv Pili--P chrvv MGMT_MOUSE : 38- 42: lsgkt Pntd--P teapa MGMT_MOUSE : 42- 46: tpntd Ptea--P atpev MGMT_MOUSE : 49- 55: eapat PevlggP egvpe MGMT_MOUSE : 55- 59: evlgg Pegv--P eplvq MGMT_MOUSE : 55- 61: evlgg PegvpeP lvqct MGMT_MOUSE : 85- 90: eglpl Palhh-P vfqqd MGMT_MOUSE : 141- 147: amrsn PvpiliP chrvv MGMT_MOUSE : 143- 147: rsnpv Pili--P chrvv MGMT_MOUSE : 179- 183: ahegi Ptgq--P askgl MGMT_RAT : 38- 42: lsgkt Pntd--P teapa MGMT_RAT : 42- 46: tpntd Ptea--P acpev MGMT_RAT : 49- 55: eapac PevlggP egvpe MGMT_RAT : 55- 59: evlgg Pegv--P eplvq MGMT_RAT : 55- 61: evlgg PegvpeP lvqct MGMT_RAT : 85- 90: eglpl Palhh-P vfqqd MGMT_RAT : 141- 147: amrsn PvpiliP chrvi MGMT_RAT : 143- 147: rsnpv Pili--P chrvi MGMT_RAT : 179- 183: ahegi Ptgq--P askgl MGMT_YEAST : 105- 110: nkmpl Psgai-P feflf OGT_ECOLI : 132- 138: angsn PisivvP chrvi OGT_HAEIN : 134- 140: avgsn PisiiiP chril OGT_SALTY : 76- 82: angan PisivvP chrvi Number of patterns evaluated by Pratt:24 Total running time: 1 seconds