------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 7 sequences from file MCM PATTERN CONSERVATION: CM: min Nr of Seqs to Match 7 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename MCM.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: MUTA_HUMAN 750 MUTA_MOUSE 748 MUTA_PROFR 638 MUTA_STRCM 616 MUTB_PROFR 728 MUTB_STRCM 733 SBM_ECOLI 714 Pratt run started at Thu Feb 6 20:16:23 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 40.7005 7( 7) R-x(4)-T-S-x(4)-T-x(2)-D-x(3)-N-x(2)-R-x(3,4)-A-x(2,3)-A-x(2)-G 2: 36.5305 7( 7) T-S-x(4)-T-x(2)-D-x(3)-N-x(2)-R-x(3,4)-A-x(2,3)-A-x(2)-G 3: 32.3604 7( 7) S-x(4)-T-x(2)-D-x(3)-N-x(2)-R-x(3,4)-A-x(2,3)-A-x(2)-G 4: 28.1904 7( 7) P-x(2)-G-S-x(0,1)-Y-x(1,2)-E-x-L-T 5: 28.1904 7( 7) D-P-x(1,2)-G-x(0,1)-S-x(3)-E-x-L-T 6: 28.1904 7( 7) D-x(3)-G-S-x(0,1)-Y-x(1,2)-E-x-L-T 7: 28.1904 7( 7) T-x(2)-D-x(3)-N-x(2)-R-x(3,4)-A-x(2,3)-A-x(2)-G 8: 27.6904 9( 7) F-x(3,4)-A-x(2)-R-A-x-R-x(2)-W-x(0,2)-A 9: 25.0203 7( 7) R-I-A-R-N-T 10: 24.5203 8( 7) R-x(0,1)-I-A-R-N-T 11: 24.0203 7( 7) A-x-Q-x(3,4)-V-A-x(2)-L-x(3,4)-G 12: 24.0203 7( 7) G-S-x(0,1)-Y-x(1,2)-E-x-L-T 13: 24.0203 7( 7) P-x(1,2)-G-x(0,1)-S-x(3)-E-x-L-T 14: 24.0203 7( 7) D-x(3)-N-x(2)-R-x(3,4)-A-x(2,3)-A-x(2)-G 15: 24.0203 7( 7) A-x(2)-R-A-x-R-x(2)-W-x(0,2)-A 16: 20.8503 7( 7) I-A-R-N-T 17: 20.3503 7( 7) G-L-x(1,2)-D-x-F-x(2)-R 18: 20.3503 8( 7) A-G-x(0,1)-A-x(4)-E-x(4)-L 19: 19.8503 10( 7) Q-x(3,4)-V-A-x(2)-L-x(3,4)-G 20: 19.8503 7( 7) A-x(2,3)-G-x(2)-V-A-x(1,2)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 107.7201 7( 7) R-I-A-R-N-T-x(2)-[FILV]-[IL]-x-[EQ]-E-[SV]-x(2)-[ACGPT]-[KR]-[TV]-x-D-P-x-[AGS]-G-S-x(2)-[IMV]-E-x-L-T-x-[DEQS]-[ILV]-x-[DEHKR]-x-A-x(3)-[FI]-x-[EQ]-[IV]-[DE] B 2: 107.2201 8( 7) R-x(0,1)-I-A-R-N-T-x(2)-[FILV]-[IL]-x-[EQ]-E-[SV]-x(2)-[ACGPT]-[KR]-[TV]-x-D-P-x-[AGS]-G-S-x(2)-[IMV]-E-x-L-T-x-[DEQS]-[ILV]-x-[DEHKR]-x-A-x(3)-[FI]-x-[EQ]-[IV]-[DE] C 3: 106.7897 7( 7) I-A-R-N-T-x(2)-[FILV]-[IL]-x-[EQ]-E-[SV]-x(2)-[ACGPT]-[KR]-[TV]-x-D-P-x-[AGS]-G-S-x(2)-[IMV]-E-x-L-T-x-[DEQS]-[ILV]-x-[DEHKR]-x-A-x(3)-[FI]-x-[EQ]-[IV]-[DE]-x(2)-[DG] D 4: 100.1243 7( 7) R-[AQT]-x-[ACS]-x-T-S-x(3)-[LMV]-T-x-[EQR]-D-[PV]-[FWY]-[NV]-N-[IMV]-x-R-x(3,4)-A-x(2,3)-A-[GSTV]-x-G-x-[AT]-[DEQ]-[AS]-[ILV]-x-[STV]-x(2)-[FL]-[DT]-x-[AE]-[IL]-[AG]-L E 5: 100.0011 7( 7) T-S-x(3)-[LMV]-T-x-[EQR]-D-[PV]-[FWY]-[NV]-N-[IMV]-x-R-x(3,4)-A-x(2,3)-A-[GSTV]-x-G-x-[AT]-[DEQ]-[AS]-[ILV]-x-[STV]-x(2)-[FL]-[DT]-x-[AE]-[IL]-[AG]-L-P-[DET]-[ADV] F 6: 95.8310 7( 7) S-x(3)-[LMV]-T-x-[EQR]-D-[PV]-[FWY]-[NV]-N-[IMV]-x-R-x(3,4)-A-x(2,3)-A-[GSTV]-x-G-x-[AT]-[DEQ]-[AS]-[ILV]-x-[STV]-x(2)-[FL]-[DT]-x-[AE]-[IL]-[AG]-L-P-[DET]-[ADV] G 7: 93.1224 7( 7) D-P-x-[AGS]-G-S-x(0,1)-Y-x(1,2)-E-x-L-T-x-[DEQS]-[ILV]-x-[DEHKR]-x-A-x(3)-[FI]-x-[EQ]-[IV]-[DE]-x(2)-[DG]-G-x-[ASV]-x-A-[ILV]-x(2)-[EG]-x-[PV]-x(3)-[ILV]-[ADE]-[AE]-[ACT] H 8: 89.5356 7( 7) G-S-x(0,1)-Y-x(1,2)-E-x-L-T-x-[DEQS]-[ILV]-x-[DEHKR]-x-A-x(3)-[FI]-x-[EQ]-[IV]-[DE]-x(2)-[DG]-G-x-[ASV]-x-A-[ILV]-x(2)-[EG]-x-[PV]-x(3)-[ILV]-[ADE]-[AE]-[ACT]-x-A-[ER] I 9: 89.1552 7( 7) D-P-x(1,2)-G-x(0,1)-S-x(2)-[IMV]-E-x-L-T-x-[DEQS]-[ILV]-x-[DEHKR]-x-A-x(3)-[FI]-x-[EQ]-[IV]-[DE]-x(2)-[DG]-G-x-[ASV]-x-A-[ILV]-x(2)-[EG]-x-[PV]-x(3)-[ILV]-[ADE]-[AE]-[ACT] J 10: 88.9524 7( 7) P-x-[AGS]-G-S-x(0,1)-Y-x(1,2)-E-x-L-T-x-[DEQS]-[ILV]-x-[DEHKR]-x-A-x(3)-[FI]-x-[EQ]-[IV]-[DE]-x(2)-[DG]-G-x-[ASV]-x-A-[ILV]-x(2)-[EG]-x-[PV]-x(3)-[ILV]-[ADE]-[AE]-[ACT] K 11: 88.8238 7( 7) T-x-[EQR]-D-[PV]-[FWY]-[NV]-N-[IMV]-x-R-x(3,4)-A-x(2,3)-A-[GSTV]-x-G-x-[AT]-[DEQ]-[AS]-[ILV]-x-[STV]-x(2)-[FL]-[DT]-x-[AE]-[IL]-[AG]-L-P-[DET]-[ADV] L 12: 84.9851 7( 7) P-x(1,2)-G-x(0,1)-S-x(2)-[IMV]-E-x-L-T-x-[DEQS]-[ILV]-x-[DEHKR]-x-A-x(3)-[FI]-x-[EQ]-[IV]-[DE]-x(2)-[DG]-G-x-[ASV]-x-A-[ILV]-x(2)-[EG]-x-[PV]-x(3)-[ILV]-[ADE]-[AE]-[ACT] M 13: 82.0597 7( 7) D-[PV]-[FWY]-[NV]-N-[IMV]-x-R-x(3,4)-A-x(2,3)-A-[GSTV]-x-G-x-[AT]-[DEQ]-[AS]-[ILV]-x-[STV]-x(2)-[FL]-[DT]-x-[AE]-[IL]-[AG]-L-P-[DET]-[ADV] N 14: 59.2461 7( 7) R-[AQT]-x-[ACS]-x-T-S-x(3)-[LMV]-T-x-[EQR]-D-[PV]-[FWY]-[NV]-N-[IMV]-x-R-x(3,4)-A-x(2,3)-A O 15: 56.4986 7( 7) A-G-x(0,1)-A-x-[AD]-[ADTV]-x-E-x(4)-L-x-[DT]-[GQ]-[AIV]-[DEP]-x(2)-[KR]-x(3)-[DES]-x-[GT]-[FLM]-[DGNT]-[AGV]-[ADET] P 16: 49.7312 7( 7) T-S-x(3)-[LMV]-T-x-[EQR]-D-[PV]-[FWY]-[NV]-N-[IMV]-x-R-x(3,4)-A-x(2,3)-A Q 17: 45.5612 7( 7) S-x(3)-[LMV]-T-x-[EQR]-D-[PV]-[FWY]-[NV]-N-[IMV]-x-R-x(3,4)-A-x(2,3)-A R 18: 41.1122 7( 7) G-L-x(1,2)-D-[ADEQ]-F-[AP]-x-R-[IL]-[AS]-x(3)-[AGS]-x-[GIV]-[LM] S 19: 39.2550 9( 7) F-x(3,4)-A-x-[LM]-R-A-[AGL]-R-x-[AL]-W-x(0,2)-A-x(2)-[AGIV] T 20: 38.5539 7( 7) T-x-[EQR]-D-[PV]-[FWY]-[NV]-N-[IMV]-x-R-x(3,4)-A-x(2,3)-A Best patterns with alignements: fitness hits(seqs) Pattern A 1: 107.7201 7( 7) R-I-A-R-N-T-x(2)-[FILV]-[IL]-x-[EQ]-E-[SV]-x(2)-[ACGPT]-[KR]-[TV]-x-D-P-x-[AGS]-G-S-x(2)-[IMV]-E-x-L-T-x-[DEQS]-[ILV]-x-[DEHKR]-x-A-x(3)-[FI]-x-[EQ]-[IV]-[DE] Occurences: 7(7) MUTA_HUMAN : 403- 450: tvksa RIARNTqiIIqEESgiPKVaDPwGGSymMEcLTnDVyDaAlklInEIE emggm MUTA_MOUSE : 401- 448: tvksa RIARNTriIIqEESgiPKVaDPwGGSymMEsLTnDVyEaAlklIyEVE emggm MUTA_PROFR : 377- 424: ddfpl RIARNTgiVLaEEVniGRVnDPaGGSyyVEsLTrSLaDaAwkeFqEVE klggm MUTA_STRCM : 361- 408: dafar RIARNTstILlEEShlARViDPaGGSwyVErLTdELaHaAwdfFkEIE radgq MUTB_PROFR : 381- 428: tdfsa RIARNTqlFLqQESgtTRViDPwSGSayVEeLTwDLaRkAwghIqEVE kvggm MUTB_STRCM : 384- 431: tdfsa RIARNTqlLIqQESgtTRTiDPwGGSayVEkLTyDLaRrAwqhIeEVE aaggm SBM_ECOLI : 370- 417: tdfsa RIARNTqiIIqEESelCRTvDPlAGSyyIEsLTdQIvKqAraiIqQID eaggm B 2: 107.2201 8( 7) R-x(0,1)-I-A-R-N-T-x(2)-[FILV]-[IL]-x-[EQ]-E-[SV]-x(2)-[ACGPT]-[KR]-[TV]-x-D-P-x-[AGS]-G-S-x(2)-[IMV]-E-x-L-T-x-[DEQS]-[ILV]-x-[DEHKR]-x-A-x(3)-[FI]-x-[EQ]-[IV]-[DE] Occurences: 8(7) MUTA_HUMAN : 403- 450: tvksa R-IARNTqiIIqEESgiPKVaDPwGGSymMEcLTnDVyDaAlklInEIE emggm MUTA_MOUSE : 401- 448: tvksa R-IARNTriIIqEESgiPKVaDPwGGSymMEsLTnDVyEaAlklIyEVE emggm MUTA_PROFR : 377- 424: ddfpl R-IARNTgiVLaEEVniGRVnDPaGGSyyVEsLTrSLaDaAwkeFqEVE klggm MUTA_STRCM : 360- 408: pdafa RrIARNTstILlEEShlARViDPaGGSwyVErLTdELaHaAwdfFkEIE radgq MUTA_STRCM : 361- 408: dafar R-IARNTstILlEEShlARViDPaGGSwyVErLTdELaHaAwdfFkEIE radgq MUTB_PROFR : 381- 428: tdfsa R-IARNTqlFLqQESgtTRViDPwSGSayVEeLTwDLaRkAwghIqEVE kvggm MUTB_STRCM : 384- 431: tdfsa R-IARNTqlLIqQESgtTRTiDPwGGSayVEkLTyDLaRrAwqhIeEVE aaggm SBM_ECOLI : 370- 417: tdfsa R-IARNTqiIIqEESelCRTvDPlAGSyyIEsLTdQIvKqAraiIqQID eaggm C 3: 106.7897 7( 7) I-A-R-N-T-x(2)-[FILV]-[IL]-x-[EQ]-E-[SV]-x(2)-[ACGPT]-[KR]-[TV]-x-D-P-x-[AGS]-G-S-x(2)-[IMV]-E-x-L-T-x-[DEQS]-[ILV]-x-[DEHKR]-x-A-x(3)-[FI]-x-[EQ]-[IV]-[DE]-x(2)-[DG] Occurences: 7(7) MUTA_HUMAN : 404- 453: vksar IARNTqiIIqEESgiPKVaDPwGGSymMEcLTnDVyDaAlklInEIEemG gmaka MUTA_MOUSE : 402- 451: vksar IARNTriIIqEESgiPKVaDPwGGSymMEsLTnDVyEaAlklIyEVEemG gmaka MUTA_PROFR : 378- 427: dfplr IARNTgiVLaEEVniGRVnDPaGGSyyVEsLTrSLaDaAwkeFqEVEklG gmska MUTA_STRCM : 362- 411: afarr IARNTstILlEEShlARViDPaGGSwyVErLTdELaHaAwdfFkEIEraD gqvaa MUTB_PROFR : 382- 431: dfsar IARNTqlFLqQESgtTRViDPwSGSayVEeLTwDLaRkAwghIqEVEkvG gmaka MUTB_STRCM : 385- 434: dfsar IARNTqlLIqQESgtTRTiDPwGGSayVEkLTyDLaRrAwqhIeEVEaaG gmaqa SBM_ECOLI : 371- 420: dfsar IARNTqiIIqEESelCRTvDPlAGSyyIEsLTdQIvKqAraiIqQIDeaG gmaka D 4: 100.1243 7( 7) R-[AQT]-x-[ACS]-x-T-S-x(3)-[LMV]-T-x-[EQR]-D-[PV]-[FWY]-[NV]-N-[IMV]-x-R-x(3,4)-A-x(2,3)-A-[GSTV]-x-G-x-[AT]-[DEQ]-[AS]-[ILV]-x-[STV]-x(2)-[FL]-[DT]-x-[AE]-[IL]-[AG]-L Occurences: 7(7) MUTA_HUMAN : 348- 396: kslll RAhCqTSgwsLTeQDPYNNIvRtaieAma-AVfGgTQSLhTnsFDeALGL ptvks MUTA_MOUSE : 346- 394: kslll RAhCqTSgwsLTeQDPYNNIvRtaieAma-AVfGgTQSLhSnsFDeALGL ptvks MUTA_PROFR : 321- 369: dkrga RQnAiTSwrdVTrEDPYVNIlRgsi-AtfsASvGgAESItTlpFTqALGL peddf MUTA_STRCM : 306- 354: aagaq RQhAvTSpvmMTrRDPWVNMlRttv-AclgAGvGgADAVtVlpFDhELGL pdafa MUTB_PROFR : 326- 374: ksmsl RThSqTSgwsLTaQDVYNNVvRtcieAma-ATqGhTQSLhTnsLDeAIAL ptdfs MUTB_STRCM : 329- 377: kslsl RThSqTSgwsLTaQDVFNNVtRtcveAma-ATqGhTQSLhTnaLDeALAL ptdfs SBM_ECOLI : 315- 363: kslal RThCqTSgwsLTeQDPYNNViRttieAla-ATlGgTQSLhTnvFDeALGL ptdfs E 5: 100.0011 7( 7) T-S-x(3)-[LMV]-T-x-[EQR]-D-[PV]-[FWY]-[NV]-N-[IMV]-x-R-x(3,4)-A-x(2,3)-A-[GSTV]-x-G-x-[AT]-[DEQ]-[AS]-[ILV]-x-[STV]-x(2)-[FL]-[DT]-x-[AE]-[IL]-[AG]-L-P-[DET]-[ADV] Occurences: 7(7) MUTA_HUMAN : 353- 399: rahcq TSgwsLTeQDPYNNIvRtaieAma-AVfGgTQSLhTnsFDeALGLPTV ksari MUTA_MOUSE : 351- 397: rahcq TSgwsLTeQDPYNNIvRtaieAma-AVfGgTQSLhSnsFDeALGLPTV ksari MUTA_PROFR : 326- 372: rqnai TSwrdVTrEDPYVNIlRgsi-AtfsASvGgAESItTlpFTqALGLPED dfplr MUTA_STRCM : 311- 357: rqhav TSpvmMTrRDPWVNMlRttv-AclgAGvGgADAVtVlpFDhELGLPDA farri MUTB_PROFR : 331- 377: rthsq TSgwsLTaQDVYNNVvRtcieAma-ATqGhTQSLhTnsLDeAIALPTD fsari MUTB_STRCM : 334- 380: rthsq TSgwsLTaQDVFNNVtRtcveAma-ATqGhTQSLhTnaLDeALALPTD fsari SBM_ECOLI : 320- 366: rthcq TSgwsLTeQDPYNNViRttieAla-ATlGgTQSLhTnvFDeALGLPTD fsari F 6: 95.8310 7( 7) S-x(3)-[LMV]-T-x-[EQR]-D-[PV]-[FWY]-[NV]-N-[IMV]-x-R-x(3,4)-A-x(2,3)-A-[GSTV]-x-G-x-[AT]-[DEQ]-[AS]-[ILV]-x-[STV]-x(2)-[FL]-[DT]-x-[AE]-[IL]-[AG]-L-P-[DET]-[ADV] Occurences: 7(7) MUTA_HUMAN : 354- 399: ahcqt SgwsLTeQDPYNNIvRtaieAma-AVfGgTQSLhTnsFDeALGLPTV ksari MUTA_MOUSE : 352- 397: ahcqt SgwsLTeQDPYNNIvRtaieAma-AVfGgTQSLhSnsFDeALGLPTV ksari MUTA_PROFR : 327- 372: qnait SwrdVTrEDPYVNIlRgsi-AtfsASvGgAESItTlpFTqALGLPED dfplr MUTA_STRCM : 312- 357: qhavt SpvmMTrRDPWVNMlRttv-AclgAGvGgADAVtVlpFDhELGLPDA farri MUTB_PROFR : 332- 377: thsqt SgwsLTaQDVYNNVvRtcieAma-ATqGhTQSLhTnsLDeAIALPTD fsari MUTB_STRCM : 335- 380: thsqt SgwsLTaQDVFNNVtRtcveAma-ATqGhTQSLhTnaLDeALALPTD fsari SBM_ECOLI : 321- 366: thcqt SgwsLTeQDPYNNViRttieAla-ATlGgTQSLhTnvFDeALGLPTD fsari G 7: 93.1224 7( 7) D-P-x-[AGS]-G-S-x(0,1)-Y-x(1,2)-E-x-L-T-x-[DEQS]-[ILV]-x-[DEHKR]-x-A-x(3)-[FI]-x-[EQ]-[IV]-[DE]-x(2)-[DG]-G-x-[ASV]-x-A-[ILV]-x(2)-[EG]-x-[PV]-x(3)-[ILV]-[ADE]-[AE]-[ACT] Occurences: 7(7) MUTA_HUMAN : 423- 471: ipkva DPwGGS-YmmEcLTnDVyDaAlklInEIEemGGmAkAVaeGiPklrIEEC aarrq MUTA_MOUSE : 421- 469: ipkva DPwGGS-YmmEsLTnDVyEaAlklIyEVEemGGmAkAVaeGiPklrIEEC aarrq MUTA_PROFR : 397- 445: igrvn DPaGGSyYv-EsLTrSLaDaAwkeFqEVEklGGmSkAVmtEhVtkvLDAC naera MUTA_PROFR : 397- 445: igrvn DPaGGS-YyvEsLTrSLaDaAwkeFqEVEklGGmSkAVmtEhVtkvLDAC naera MUTA_STRCM : 381- 429: larvi DPaGGSwYv-ErLTdELaHaAwdfFkEIEraDGqVaALrsGlVgdrIAAT waerr MUTB_PROFR : 401- 449: ttrvi DPwSGSaYv-EeLTwDLaRkAwghIqEVEkvGGmAkAIekGiPkmrIEEA aartq MUTB_STRCM : 404- 452: ttrti DPwGGSaYv-EkLTyDLaRrAwqhIeEVEaaGGmAqAIdaGiPklrVEEA aartq SBM_ECOLI : 390- 438: lcrtv DPlAGSyYi-EsLTdQIvKqAraiIqQIDeaGGmAkAIeaGlPkrmIEEA sareq SBM_ECOLI : 390- 438: lcrtv DPlAGS-YyiEsLTdQIvKqAraiIqQIDeaGGmAkAIeaGlPkrmIEEA sareq H 8: 89.5356 7( 7) G-S-x(0,1)-Y-x(1,2)-E-x-L-T-x-[DEQS]-[ILV]-x-[DEHKR]-x-A-x(3)-[FI]-x-[EQ]-[IV]-[DE]-x(2)-[DG]-G-x-[ASV]-x-A-[ILV]-x(2)-[EG]-x-[PV]-x(3)-[ILV]-[ADE]-[AE]-[ACT]-x-A-[ER] Occurences: 7(7) MUTA_HUMAN : 427- 474: adpwg GS-YmmEcLTnDVyDaAlklInEIEemGGmAkAVaeGiPklrIEECaAR rqari MUTA_MOUSE : 425- 472: adpwg GS-YmmEsLTnDVyEaAlklIyEVEemGGmAkAVaeGiPklrIEECaAR rqari MUTA_PROFR : 401- 448: ndpag GSyYv-EsLTrSLaDaAwkeFqEVEklGGmSkAVmtEhVtkvLDACnAE rakrl MUTA_PROFR : 401- 448: ndpag GS-YyvEsLTrSLaDaAwkeFqEVEklGGmSkAVmtEhVtkvLDACnAE rakrl MUTA_STRCM : 385- 432: idpag GSwYv-ErLTdELaHaAwdfFkEIEraDGqVaALrsGlVgdrIAATwAE rrkkl MUTB_PROFR : 405- 452: idpws GSaYv-EeLTwDLaRkAwghIqEVEkvGGmAkAIekGiPkmrIEEAaAR tqari MUTB_STRCM : 408- 455: idpwg GSaYv-EkLTyDLaRrAwqhIeEVEaaGGmAqAIdaGiPklrVEEAaAR tqari SBM_ECOLI : 394- 441: vdpla GSyYi-EsLTdQIvKqAraiIqQIDeaGGmAkAIeaGlPkrmIEEAsAR eqsli SBM_ECOLI : 394- 441: vdpla GS-YyiEsLTdQIvKqAraiIqQIDeaGGmAkAIeaGlPkrmIEEAsAR eqsli I 9: 89.1552 7( 7) D-P-x(1,2)-G-x(0,1)-S-x(2)-[IMV]-E-x-L-T-x-[DEQS]-[ILV]-x-[DEHKR]-x-A-x(3)-[FI]-x-[EQ]-[IV]-[DE]-x(2)-[DG]-G-x-[ASV]-x-A-[ILV]-x(2)-[EG]-x-[PV]-x(3)-[ILV]-[ADE]-[AE]-[ACT] Occurences: 7(7) MUTA_HUMAN : 423- 471: ipkva DPwgG-SymMEcLTnDVyDaAlklInEIEemGGmAkAVaeGiPklrIEEC aarrq MUTA_HUMAN : 423- 471: ipkva DPw-GgSymMEcLTnDVyDaAlklInEIEemGGmAkAVaeGiPklrIEEC aarrq MUTA_MOUSE : 421- 469: ipkva DPwgG-SymMEsLTnDVyEaAlklIyEVEemGGmAkAVaeGiPklrIEEC aarrq MUTA_MOUSE : 421- 469: ipkva DPw-GgSymMEsLTnDVyEaAlklIyEVEemGGmAkAVaeGiPklrIEEC aarrq MUTA_PROFR : 397- 445: igrvn DPagG-SyyVEsLTrSLaDaAwkeFqEVEklGGmSkAVmtEhVtkvLDAC naera MUTA_PROFR : 397- 445: igrvn DPa-GgSyyVEsLTrSLaDaAwkeFqEVEklGGmSkAVmtEhVtkvLDAC naera MUTA_STRCM : 381- 429: larvi DPagG-SwyVErLTdELaHaAwdfFkEIEraDGqVaALrsGlVgdrIAAT waerr MUTA_STRCM : 381- 429: larvi DPa-GgSwyVErLTdELaHaAwdfFkEIEraDGqVaALrsGlVgdrIAAT waerr MUTB_PROFR : 401- 449: ttrvi DPwsG-SayVEeLTwDLaRkAwghIqEVEkvGGmAkAIekGiPkmrIEEA aartq MUTB_STRCM : 404- 452: ttrti DPwgG-SayVEkLTyDLaRrAwqhIeEVEaaGGmAqAIdaGiPklrVEEA aartq MUTB_STRCM : 404- 452: ttrti DPw-GgSayVEkLTyDLaRrAwqhIeEVEaaGGmAqAIdaGiPklrVEEA aartq SBM_ECOLI : 390- 438: lcrtv DPlaG-SyyIEsLTdQIvKqAraiIqQIDeaGGmAkAIeaGlPkrmIEEA sareq J 10: 88.9524 7( 7) P-x-[AGS]-G-S-x(0,1)-Y-x(1,2)-E-x-L-T-x-[DEQS]-[ILV]-x-[DEHKR]-x-A-x(3)-[FI]-x-[EQ]-[IV]-[DE]-x(2)-[DG]-G-x-[ASV]-x-A-[ILV]-x(2)-[EG]-x-[PV]-x(3)-[ILV]-[ADE]-[AE]-[ACT] Occurences: 7(7) MUTA_HUMAN : 424- 471: pkvad PwGGS-YmmEcLTnDVyDaAlklInEIEemGGmAkAVaeGiPklrIEEC aarrq MUTA_MOUSE : 422- 469: pkvad PwGGS-YmmEsLTnDVyEaAlklIyEVEemGGmAkAVaeGiPklrIEEC aarrq MUTA_PROFR : 398- 445: grvnd PaGGSyYv-EsLTrSLaDaAwkeFqEVEklGGmSkAVmtEhVtkvLDAC naera MUTA_PROFR : 398- 445: grvnd PaGGS-YyvEsLTrSLaDaAwkeFqEVEklGGmSkAVmtEhVtkvLDAC naera MUTA_STRCM : 382- 429: arvid PaGGSwYv-ErLTdELaHaAwdfFkEIEraDGqVaALrsGlVgdrIAAT waerr MUTB_PROFR : 402- 449: trvid PwSGSaYv-EeLTwDLaRkAwghIqEVEkvGGmAkAIekGiPkmrIEEA aartq MUTB_STRCM : 405- 452: trtid PwGGSaYv-EkLTyDLaRrAwqhIeEVEaaGGmAqAIdaGiPklrVEEA aartq SBM_ECOLI : 391- 438: crtvd PlAGSyYi-EsLTdQIvKqAraiIqQIDeaGGmAkAIeaGlPkrmIEEA sareq SBM_ECOLI : 391- 438: crtvd PlAGS-YyiEsLTdQIvKqAraiIqQIDeaGGmAkAIeaGlPkrmIEEA sareq K 11: 88.8238 7( 7) T-x-[EQR]-D-[PV]-[FWY]-[NV]-N-[IMV]-x-R-x(3,4)-A-x(2,3)-A-[GSTV]-x-G-x-[AT]-[DEQ]-[AS]-[ILV]-x-[STV]-x(2)-[FL]-[DT]-x-[AE]-[IL]-[AG]-L-P-[DET]-[ADV] Occurences: 7(7) MUTA_HUMAN : 359- 399: sgwsl TeQDPYNNIvRtaieAma-AVfGgTQSLhTnsFDeALGLPTV ksari MUTA_MOUSE : 357- 397: sgwsl TeQDPYNNIvRtaieAma-AVfGgTQSLhSnsFDeALGLPTV ksari MUTA_PROFR : 332- 372: swrdv TrEDPYVNIlRgsi-AtfsASvGgAESItTlpFTqALGLPED dfplr MUTA_STRCM : 317- 357: spvmm TrRDPWVNMlRttv-AclgAGvGgADAVtVlpFDhELGLPDA farri MUTB_PROFR : 337- 377: sgwsl TaQDVYNNVvRtcieAma-ATqGhTQSLhTnsLDeAIALPTD fsari MUTB_STRCM : 340- 380: sgwsl TaQDVFNNVtRtcveAma-ATqGhTQSLhTnaLDeALALPTD fsari SBM_ECOLI : 326- 366: sgwsl TeQDPYNNViRttieAla-ATlGgTQSLhTnvFDeALGLPTD fsari L 12: 84.9851 7( 7) P-x(1,2)-G-x(0,1)-S-x(2)-[IMV]-E-x-L-T-x-[DEQS]-[ILV]-x-[DEHKR]-x-A-x(3)-[FI]-x-[EQ]-[IV]-[DE]-x(2)-[DG]-G-x-[ASV]-x-A-[ILV]-x(2)-[EG]-x-[PV]-x(3)-[ILV]-[ADE]-[AE]-[ACT] Occurences: 7(7) MUTA_HUMAN : 424- 471: pkvad PwgG-SymMEcLTnDVyDaAlklInEIEemGGmAkAVaeGiPklrIEEC aarrq MUTA_HUMAN : 424- 471: pkvad Pw-GgSymMEcLTnDVyDaAlklInEIEemGGmAkAVaeGiPklrIEEC aarrq MUTA_MOUSE : 422- 469: pkvad PwgG-SymMEsLTnDVyEaAlklIyEVEemGGmAkAVaeGiPklrIEEC aarrq MUTA_MOUSE : 422- 469: pkvad Pw-GgSymMEsLTnDVyEaAlklIyEVEemGGmAkAVaeGiPklrIEEC aarrq MUTA_PROFR : 398- 445: grvnd PagG-SyyVEsLTrSLaDaAwkeFqEVEklGGmSkAVmtEhVtkvLDAC naera MUTA_PROFR : 398- 445: grvnd Pa-GgSyyVEsLTrSLaDaAwkeFqEVEklGGmSkAVmtEhVtkvLDAC naera MUTA_STRCM : 382- 429: arvid PagG-SwyVErLTdELaHaAwdfFkEIEraDGqVaALrsGlVgdrIAAT waerr MUTA_STRCM : 382- 429: arvid Pa-GgSwyVErLTdELaHaAwdfFkEIEraDGqVaALrsGlVgdrIAAT waerr MUTB_PROFR : 402- 449: trvid PwsG-SayVEeLTwDLaRkAwghIqEVEkvGGmAkAIekGiPkmrIEEA aartq MUTB_STRCM : 405- 452: trtid PwgG-SayVEkLTyDLaRrAwqhIeEVEaaGGmAqAIdaGiPklrVEEA aartq MUTB_STRCM : 405- 452: trtid Pw-GgSayVEkLTyDLaRrAwqhIeEVEaaGGmAqAIdaGiPklrVEEA aartq SBM_ECOLI : 391- 438: crtvd PlaG-SyyIEsLTdQIvKqAraiIqQIDeaGGmAkAIeaGlPkrmIEEA sareq M 13: 82.0597 7( 7) D-[PV]-[FWY]-[NV]-N-[IMV]-x-R-x(3,4)-A-x(2,3)-A-[GSTV]-x-G-x-[AT]-[DEQ]-[AS]-[ILV]-x-[STV]-x(2)-[FL]-[DT]-x-[AE]-[IL]-[AG]-L-P-[DET]-[ADV] Occurences: 7(7) MUTA_HUMAN : 362- 399: slteq DPYNNIvRtaieAma-AVfGgTQSLhTnsFDeALGLPTV ksari MUTA_MOUSE : 360- 397: slteq DPYNNIvRtaieAma-AVfGgTQSLhSnsFDeALGLPTV ksari MUTA_PROFR : 335- 372: dvtre DPYVNIlRgsi-AtfsASvGgAESItTlpFTqALGLPED dfplr MUTA_STRCM : 320- 357: mmtrr DPWVNMlRttv-AclgAGvGgADAVtVlpFDhELGLPDA farri MUTB_PROFR : 340- 377: sltaq DVYNNVvRtcieAma-ATqGhTQSLhTnsLDeAIALPTD fsari MUTB_STRCM : 343- 380: sltaq DVFNNVtRtcveAma-ATqGhTQSLhTnaLDeALALPTD fsari SBM_ECOLI : 329- 366: slteq DPYNNViRttieAla-ATlGgTQSLhTnvFDeALGLPTD fsari N 14: 59.2461 7( 7) R-[AQT]-x-[ACS]-x-T-S-x(3)-[LMV]-T-x-[EQR]-D-[PV]-[FWY]-[NV]-N-[IMV]-x-R-x(3,4)-A-x(2,3)-A Occurences: 7(7) MUTA_HUMAN : 348- 377: kslll RAhCqTSgwsLTeQDPYNNIvRtaieAma-A vfggt MUTA_MOUSE : 346- 375: kslll RAhCqTSgwsLTeQDPYNNIvRtaieAma-A vfggt MUTA_PROFR : 321- 350: dkrga RQnAiTSwrdVTrEDPYVNIlRgsi-AtfsA svgga MUTA_STRCM : 306- 335: aagaq RQhAvTSpvmMTrRDPWVNMlRttv-AclgA gvgga MUTB_PROFR : 326- 355: ksmsl RThSqTSgwsLTaQDVYNNVvRtcieAma-A tqght MUTB_STRCM : 329- 358: kslsl RThSqTSgwsLTaQDVFNNVtRtcveAma-A tqght SBM_ECOLI : 315- 344: kslal RThCqTSgwsLTeQDPYNNViRttieAla-A tlggt O 15: 56.4986 7( 7) A-G-x(0,1)-A-x-[AD]-[ADTV]-x-E-x(4)-L-x-[DT]-[GQ]-[AIV]-[DEP]-x(2)-[KR]-x(3)-[DES]-x-[GT]-[FLM]-[DGNT]-[AGV]-[ADET] Occurences: 7(7) MUTA_HUMAN : 160- 191: gdvgm AGvAiDTvEdtkiLfDGIPleKmsvSmTMNGA vipvl MUTA_MOUSE : 158- 189: gdvgm AGvAiDTvEdtkiLfDGIPleKmsvSmTMNGA vipvl MUTA_PROFR : 244- 274: niyhn AG-AgDVaElawaLaTGAEyvRalvEqGFTAT eafdt MUTA_STRCM : 230- 260: lpyhe AG-AsAAqElgasLaTGVEylRalhDkGLGVE kafaq MUTB_PROFR : 248- 278: yhmqe AG-AtADiEmaytLaDGVDyiRageSvGLNVD qfapr MUTB_STRCM : 251- 281: yhiqe AG-AtADlElaytLaDGVEylRagqEaGLDVD afapr SBM_ECOLI : 128- 159: gdvgk AGvAiDTvEdmkvLfDQIPldKmsvSmTMNGA vlpvl P 16: 49.7312 7( 7) T-S-x(3)-[LMV]-T-x-[EQR]-D-[PV]-[FWY]-[NV]-N-[IMV]-x-R-x(3,4)-A-x(2,3)-A Occurences: 7(7) MUTA_HUMAN : 353- 377: rahcq TSgwsLTeQDPYNNIvRtaieAma-A vfggt MUTA_MOUSE : 351- 375: rahcq TSgwsLTeQDPYNNIvRtaieAma-A vfggt MUTA_PROFR : 326- 350: rqnai TSwrdVTrEDPYVNIlRgsi-AtfsA svgga MUTA_STRCM : 311- 335: rqhav TSpvmMTrRDPWVNMlRttv-AclgA gvgga MUTB_PROFR : 331- 355: rthsq TSgwsLTaQDVYNNVvRtcieAma-A tqght MUTB_STRCM : 334- 358: rthsq TSgwsLTaQDVFNNVtRtcveAma-A tqght SBM_ECOLI : 320- 344: rthcq TSgwsLTeQDPYNNViRttieAla-A tlggt Q 17: 45.5612 7( 7) S-x(3)-[LMV]-T-x-[EQR]-D-[PV]-[FWY]-[NV]-N-[IMV]-x-R-x(3,4)-A-x(2,3)-A Occurences: 7(7) MUTA_HUMAN : 354- 377: ahcqt SgwsLTeQDPYNNIvRtaieAma-A vfggt MUTA_MOUSE : 352- 375: ahcqt SgwsLTeQDPYNNIvRtaieAma-A vfggt MUTA_PROFR : 327- 350: qnait SwrdVTrEDPYVNIlRgsi-AtfsA svgga MUTA_STRCM : 312- 335: qhavt SpvmMTrRDPWVNMlRttv-AclgA gvgga MUTB_PROFR : 332- 355: thsqt SgwsLTaQDVYNNVvRtcieAma-A tqght MUTB_STRCM : 335- 358: thsqt SgwsLTaQDVFNNVtRtcveAma-A tqght SBM_ECOLI : 321- 344: thcqt SgwsLTeQDPYNNViRttieAla-A tlggt R 18: 41.1122 7( 7) G-L-x(1,2)-D-[ADEQ]-F-[AP]-x-R-[IL]-[AS]-x(3)-[AGS]-x-[GIV]-[LM] Occurences: 7(7) MUTA_HUMAN : 295- 313: tglqa GLtiDEFApRLSffwGiGM nfyme MUTA_MOUSE : 293- 311: tglqa GLtiDEFApRLSffwGiGM nfyme MUTA_PROFR : 368- 386: ftqal GLpeDDFPlRIArntGiVL aeevn MUTA_STRCM : 353- 370: fdhel GLp-DAFArRIArntStIL leesh MUTB_PROFR : 274- 292: agesv GLnvDQFApRLSffwGiGM nffme MUTB_STRCM : 277- 295: agqea GLdvDAFApRLSffwAiGM nffme SBM_ECOLI : 263- 281: aaisa GLkiDDFApRLSfffGiGM dlfmn S 19: 39.2550 9( 7) F-x(3,4)-A-x-[LM]-R-A-[AGL]-R-x-[AL]-W-x(0,2)-A-x(2)-[AGIV] Occurences: 9(7) MUTA_HUMAN : 315- 333: gigmn FymeiAkMRAGRrLW--AhlI ekmfq MUTA_MOUSE : 313- 331: gigmn FymeiAkMRAGRrLW--AhlI ekmfq MUTA_PROFR : 291- 308: athdq Flti-ArLRALReAW--AriG evfgv MUTA_STRCM : 277- 294: atadq Flti-AkLRAARrLW--ArvA evsgv MUTB_PROFR : 294- 312: gigmn FfmevAkLRAARmLW--AklV hqfgp MUTB_PROFR : 295- 312: igmnf Fmev-AkLRAARmLW--AklV hqfgp MUTB_STRCM : 297- 315: aigmn FfmevAkLRAARlLW--AklV kqfdp MUTB_STRCM : 298- 315: igmnf Fmev-AkLRAARlLW--AklV kqfdp SBM_ECOLI : 284- 303: igmdl Fmnv-AmLRAARyLWseAvsG fgaqd T 20: 38.5539 7( 7) T-x-[EQR]-D-[PV]-[FWY]-[NV]-N-[IMV]-x-R-x(3,4)-A-x(2,3)-A Occurences: 7(7) MUTA_HUMAN : 359- 377: sgwsl TeQDPYNNIvRtaieAma-A vfggt MUTA_MOUSE : 357- 375: sgwsl TeQDPYNNIvRtaieAma-A vfggt MUTA_PROFR : 332- 350: swrdv TrEDPYVNIlRgsi-AtfsA svgga MUTA_STRCM : 317- 335: spvmm TrRDPWVNMlRttv-AclgA gvgga MUTB_PROFR : 337- 355: sgwsl TaQDVYNNVvRtcieAma-A tqght MUTB_STRCM : 340- 358: sgwsl TaQDVFNNVtRtcveAma-A tqght SBM_ECOLI : 326- 344: sgwsl TeQDPYNNViRttieAla-A tlggt Number of patterns evaluated by Pratt:55137 Total running time: 45 seconds