------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 7 sequences from file MARCKS_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 7 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename MARCKS_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: MACS_BOVIN 331 MACS_CHICK 280 MACS_HUMAN 331 MACS_MOUSE 308 MACS_RAT 308 MRP_MOUSE 199 MRP_RABIT 198 Pratt run started at Thu Feb 6 20:16:17 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 103.2513 7( 7) E-T-P-K-K-K-K-K-x(0,1)-F-S-F-K-K-x-F-K-L-S-G-x-S-F-K-x(3)-K-E-x(0,1)-G-x-G 2: 99.0812 7( 7) T-P-K-K-K-K-K-x(0,1)-F-S-F-K-K-x-F-K-L-S-G-x-S-F-K-x(3)-K-E-x(0,1)-G-x-G 3: 94.9112 7( 7) P-K-K-K-K-K-x(0,1)-F-S-F-K-K-x-F-K-L-S-G-x-S-F-K-x(3)-K-E-x(0,1)-G-x-G 4: 90.7411 7( 7) K-K-K-K-K-x(0,1)-F-S-F-K-K-x-F-K-L-S-G-x-S-F-K-x(3)-K-E-x(0,1)-G-x-G 5: 86.5711 9( 7) K-K-K-K-x(0,1)-F-S-F-K-K-x-F-K-L-S-G-x-S-F-K-x(3)-K-E-x(0,1)-G-x-G 6: 82.4010 9( 7) K-K-K-x(0,1)-F-S-F-K-K-x-F-K-L-S-G-x-S-F-K-x(3)-K-E-x(0,1)-G-x-G 7: 78.2310 9( 7) K-K-x(0,1)-F-S-F-K-K-x-F-K-L-S-G-x-S-F-K-x(3)-K-E-x(0,1)-G-x-G 8: 74.5609 7( 7) A-x(2)-A-S-x(0,1)-P-x-K-A-N-G-Q-E-N-G-H-V-x(2)-N-G-D-x(2)-P 9: 74.5609 7( 7) A-x(2)-A-x(0,1)-S-P-x-K-A-N-G-Q-E-N-G-H-V-x(2)-N-G-D-x(2)-P 10: 74.0609 9( 7) K-x(0,1)-F-S-F-K-K-x-F-K-L-S-G-x-S-F-K-x(3)-K-E-x(0,1)-G-x-G 11: 74.0609 13( 7) A-x(1,2)-A-S-x(0,1)-P-x-K-A-N-G-Q-E-N-G-H-V-x(2)-N-G-D-x(2)-P 12: 74.0609 13( 7) A-x(1,2)-A-x(0,1)-S-P-x-K-A-N-G-Q-E-N-G-H-V-x(2)-N-G-D-x(2)-P 13: 69.8909 7( 7) F-S-F-K-K-x-F-K-L-S-G-x-S-F-K-x(3)-K-E-x(0,1)-G-x(0,1)-G 14: 69.8909 7( 7) P-x-K-A-N-G-Q-E-N-G-H-V-x(2)-N-G-D-x(2)-P-x(2,3)-E-x(0,1)-G 15: 69.8909 7( 7) S-x(2)-K-A-N-G-Q-E-N-G-H-V-x(2)-N-G-D-x(2)-P-x(2,3)-E-x(0,1)-G 16: 69.8909 7( 7) E-x(3,4)-S-x(0,1)-P-x-K-A-N-G-Q-E-N-G-H-V-x(2)-N-G-D-x(2)-P 17: 66.2208 7( 7) S-F-K-K-x-F-K-L-S-G-x-S-F-K-x(3)-K-E-x(0,1)-G-x-G 18: 65.7208 7( 7) S-F-K-K-x-F-K-L-S-G-x-S-F-K-x(3)-K-E-x(0,1)-G-x(0,1)-G 19: 65.7208 7( 7) K-A-N-G-Q-E-N-G-H-V-x(2)-N-G-D-x(2)-P-x(2,3)-E-x(0,1)-G 20: 65.7208 8( 7) A-x(3,4)-K-A-N-G-Q-E-N-G-H-V-x(2)-N-G-D-x(2)-P-x(2,3)-E Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 160.3747 7( 7) E-T-P-K-K-K-K-K-x(0,1)-F-S-F-K-K-[PS]-F-K-L-S-G-[FL]-S-F-K-[KR]-[NS]-[KR]-K-E-x(0,1)-G-[EG]-G-[ADG]-[ES]-[AS]-[AE]-[AGS]-[AGPS]-[APT]-[AGT]-[ADE]-[AEGS]-[AEG]-x-[DEG]-[EGQ]-x-[ADE] B 2: 158.7981 7( 7) T-P-K-K-K-K-K-x(0,1)-F-S-F-K-K-[PS]-F-K-L-S-G-[FL]-S-F-K-[KR]-[NS]-[KR]-K-E-x(0,1)-G-[EG]-G-[ADG]-[ES]-[AS]-[AE]-[AGS]-[AGPS]-[APT]-[AGT]-[ADE]-[AEGS]-[AEG]-x-[DEG]-[EGQ]-x-[ADE]-x-[AGS] C 3: 157.8071 7( 7) P-K-K-K-K-K-x(0,1)-F-S-F-K-K-[PS]-F-K-L-S-G-[FL]-S-F-K-[KR]-[NS]-[KR]-K-E-x(0,1)-G-[EG]-G-[ADG]-[ES]-[AS]-[AE]-[AGS]-[AGPS]-[APT]-[AGT]-[ADE]-[AEGS]-[AEG]-x-[DEG]-[EGQ]-x-[ADE]-x-[AGS]-[AS] D 4: 156.3329 7( 7) K-K-K-K-K-x(0,1)-F-S-F-K-K-[PS]-F-K-L-S-G-[FL]-S-F-K-[KR]-[NS]-[KR]-K-E-x(0,1)-G-[EG]-G-[ADG]-[ES]-[AS]-[AE]-[AGS]-[AGPS]-[APT]-[AGT]-[ADE]-[AEGS]-[AEG]-x-[DEG]-[EGQ]-x-[ADE]-x-[AGS]-[AS]-[ACG] E 5: 154.7562 9( 7) K-K-K-K-x(0,1)-F-S-F-K-K-[PS]-F-K-L-S-G-[FL]-S-F-K-[KR]-[NS]-[KR]-K-E-x(0,1)-G-[EG]-G-[ADG]-[ES]-[AS]-[AE]-[AGS]-[AGPS]-[APT]-[AGT]-[ADE]-[AEGS]-[AEG]-x-[DEG]-[EGQ]-x-[ADE]-x-[AGS]-[AS]-[ACG]-[AGS] F 6: 153.2331 9( 7) K-K-K-x(0,1)-F-S-F-K-K-[PS]-F-K-L-S-G-[FL]-S-F-K-[KR]-[NS]-[KR]-K-E-x(0,1)-G-[EG]-G-[ADG]-[ES]-[AS]-[AE]-[AGS]-[AGPS]-[APT]-[AGT]-[ADE]-[AEGS]-[AEG]-x-[DEG]-[EGQ]-x-[ADE]-x-[AGS]-[AS]-[ACG]-[AGS]-[ADE] G 7: 150.1478 7( 7) F-S-F-K-K-[PS]-F-K-L-S-G-[FL]-S-F-K-[KR]-[NS]-[KR]-K-E-x(0,1)-G-x(0,1)-G-[AG]-[DE]-[AS]-[ES]-[AG]-[AGPS]-[AST]-[AGP]-[ADET]-[AEGS]-[AEG]-[EK]-[DGQ]-[EG]-x-[ADEG]-[AEG]-x-[AGS]-[AG]-[ACG]-[ADES]-x-[AE]-[AEG]-[AT] H 8: 149.0630 9( 7) K-K-x(0,1)-F-S-F-K-K-[PS]-F-K-L-S-G-[FL]-S-F-K-[KR]-[NS]-[KR]-K-E-x(0,1)-G-[EG]-G-[ADG]-[ES]-[AS]-[AE]-[AGS]-[AGPS]-[APT]-[AGT]-[ADE]-[AEGS]-[AEG]-x-[DEG]-[EGQ]-x-[ADE]-x-[AGS]-[AS]-[ACG]-[AGS]-[ADE] I 9: 148.6045 7( 7) S-F-K-K-[PS]-F-K-L-S-G-[FL]-S-F-K-[KR]-[NS]-[KR]-K-E-x(0,1)-G-x(0,1)-G-[AG]-[DE]-[AS]-[ES]-[AG]-[AGPS]-[AST]-[AGP]-[ADET]-[AEGS]-[AEG]-[EK]-[DGQ]-[EG]-x-[ADEG]-[AEG]-x-[AGS]-[AG]-[ACG]-[ADES]-x-[AE]-[AEG]-[AT]-[AGP] J 10: 147.5230 9( 7) K-x(0,1)-F-S-F-K-K-[PS]-F-K-L-S-G-[FL]-S-F-K-[KR]-[NS]-[KR]-K-E-x(0,1)-G-[EG]-G-[ADG]-[ES]-[AS]-[AE]-[AGS]-[AGPS]-[APT]-[AGT]-[ADE]-[AEGS]-[AEG]-x-[DEG]-[EGQ]-x-[ADE]-x-[AGS]-[AS]-[ACG]-[AGS]-[ADE]-x-[AEG] K 11: 146.4805 7( 7) S-F-K-K-[PS]-F-K-L-S-G-[FL]-S-F-K-[KR]-[NS]-[KR]-K-E-x(0,1)-G-[EG]-G-[ADG]-[ES]-[AS]-[AE]-[AGS]-[AGPS]-[APT]-[AGT]-[ADE]-[AEGS]-[AEG]-x-[DEG]-[EGQ]-x-[ADE]-x-[AGS]-[AS]-[ACG]-[AGS]-[ADE]-x-[AEG]-[AET]-A L 12: 138.8370 7( 7) S-P-[AS]-K-A-N-G-Q-E-N-G-H-V-[KR]-[SV]-N-G-D-[AL]-[ST]-P-x(2,3)-E-x(0,1)-G-x(2)-[EP]-x(2)-[ANQ]-[AGN]-[GNT]-[DGS]-[AES]-[AP]-[AP]-[AEG]-[AE]-[DT]-x-[DEK]-[AE]-x-[AE]-[APS]-[AGS]-[GPS] M 13: 134.6669 7( 7) P-[AS]-K-A-N-G-Q-E-N-G-H-V-[KR]-[SV]-N-G-D-[AL]-[ST]-P-x(2,3)-E-x(0,1)-G-x(2)-[EP]-x(2)-[ANQ]-[AGN]-[GNT]-[DGS]-[AES]-[AP]-[AP]-[AEG]-[AE]-[DT]-x-[DEK]-[AE]-x-[AE]-[APS]-[AGS]-[GPS] N 14: 132.1832 7( 7) K-A-N-G-Q-E-N-G-H-V-[KR]-[SV]-N-G-D-[AL]-[ST]-P-x(2,3)-E-x(0,1)-G-x(2)-[EP]-x(2)-[ANQ]-[AGN]-[GNT]-[DGS]-[AES]-[AP]-[AP]-[AEG]-[AE]-[DT]-x-[DEK]-[AE]-x-[AE]-[APS]-[AGS]-[GPS]-x-[AGPS]-[AQT] O 15: 124.7997 8( 7) A-x(3,4)-K-A-N-G-Q-E-N-G-H-V-[KR]-[SV]-N-G-D-[AL]-[ST]-P-x(2,3)-E-[AGPS]-[EG]-x(2)-[EP]-x(2)-[AGQ]-[ANT]-[DGN]-[EGS]-[AS]-[AP]-[AGP]-[AE]-[AET]-[DGT]-x(3)-[EP]-[AP]-[AS] P 16: 115.2549 7( 7) E-T-P-K-K-K-K-K-x(0,1)-F-S-F-K-K-[PS]-F-K-L-S-G-[FL]-S-F-K-[KR]-[NS]-[KR]-K-E-x(0,1)-G Q 17: 111.0848 7( 7) T-P-K-K-K-K-K-x(0,1)-F-S-F-K-K-[PS]-F-K-L-S-G-[FL]-S-F-K-[KR]-[NS]-[KR]-K-E-x(0,1)-G R 18: 106.9148 7( 7) P-K-K-K-K-K-x(0,1)-F-S-F-K-K-[PS]-F-K-L-S-G-[FL]-S-F-K-[KR]-[NS]-[KR]-K-E-x(0,1)-G S 19: 103.3093 7( 7) A-x(2)-A-S-x(0,1)-P-[AS]-K-A-N-G-Q-E-N-G-H-V-[KR]-[SV]-N-G-D-[AL]-[ST]-P-x-[AG]-[AE]-[EG]-x-[GS] T 20: 103.3093 7( 7) A-x(2)-A-x(0,1)-S-P-[AS]-K-A-N-G-Q-E-N-G-H-V-[KR]-[SV]-N-G-D-[AL]-[ST]-P-x-[AG]-[AE]-[EG]-x-[GS] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 160.3747 7( 7) E-T-P-K-K-K-K-K-x(0,1)-F-S-F-K-K-[PS]-F-K-L-S-G-[FL]-S-F-K-[KR]-[NS]-[KR]-K-E-x(0,1)-G-[EG]-G-[ADG]-[ES]-[AS]-[AE]-[AGS]-[AGPS]-[APT]-[AGT]-[ADE]-[AEGS]-[AEG]-x-[DEG]-[EGQ]-x-[ADE] Occurences: 7(7) MACS_BOVIN : 147- 195: pspsn ETPKKKKKrFSFKKSFKLSGFSFKKNKKEaGEGGEAEGAAGASAeGGkD easgg MACS_CHICK : 113- 161: pssss ETPKKKKKrFSFKKSFKLSGFSFKKNKKEaGEGAESEGGAAAAAeGGkE eaaaa MACS_HUMAN : 148- 196: pspsn ETPKKKKKrFSFKKSFKLSGFSFKKNKKEaGEGGEAEAPAAEGGkDEaA ggaaa MACS_MOUSE : 141- 189: pspss ETPKKKKKrFSFKKSFKLSGFSFKKSKKEsGEGAEAEGATAEGAkDEaA aaagg MACS_RAT : 141- 189: pspss ETPKKKKKrFSFKKSFKLSGFSFKKSKKEaGEGAEAEGATADGAkDEaA aaagg MRP_MOUSE : 83- 129: evapk ETPKKKKK-FSFKKPFKLSGLSFKRNRKE-GGGDSSASSPTEEEqEQgE msacs MRP_RABIT : 83- 129: dappk ETPKKKKK-FSFKKPFKLSGLSFKRNRKE-GGGDSSASSPTEEEqEQgE igacs B 2: 158.7981 7( 7) T-P-K-K-K-K-K-x(0,1)-F-S-F-K-K-[PS]-F-K-L-S-G-[FL]-S-F-K-[KR]-[NS]-[KR]-K-E-x(0,1)-G-[EG]-G-[ADG]-[ES]-[AS]-[AE]-[AGS]-[AGPS]-[APT]-[AGT]-[ADE]-[AEGS]-[AEG]-x-[DEG]-[EGQ]-x-[ADE]-x-[AGS] Occurences: 7(7) MACS_BOVIN : 148- 197: spsne TPKKKKKrFSFKKSFKLSGFSFKKNKKEaGEGGEAEGAAGASAeGGkDeA sggaa MACS_CHICK : 114- 163: sssse TPKKKKKrFSFKKSFKLSGFSFKKNKKEaGEGAESEGGAAAAAeGGkEeA aaaap MACS_HUMAN : 149- 198: spsne TPKKKKKrFSFKKSFKLSGFSFKKNKKEaGEGGEAEAPAAEGGkDEaAgG aaaaa MACS_MOUSE : 142- 191: spsse TPKKKKKrFSFKKSFKLSGFSFKKSKKEsGEGAEAEGATAEGAkDEaAaA aggeg MACS_RAT : 142- 191: spsse TPKKKKKrFSFKKSFKLSGFSFKKSKKEaGEGAEAEGATADGAkDEaAaA aggda MRP_MOUSE : 84- 131: vapke TPKKKKK-FSFKKPFKLSGLSFKRNRKE-GGGDSSASSPTEEEqEQgEmS acsde MRP_RABIT : 84- 131: appke TPKKKKK-FSFKKPFKLSGLSFKRNRKE-GGGDSSASSPTEEEqEQgEiG acsee C 3: 157.8071 7( 7) P-K-K-K-K-K-x(0,1)-F-S-F-K-K-[PS]-F-K-L-S-G-[FL]-S-F-K-[KR]-[NS]-[KR]-K-E-x(0,1)-G-[EG]-G-[ADG]-[ES]-[AS]-[AE]-[AGS]-[AGPS]-[APT]-[AGT]-[ADE]-[AEGS]-[AEG]-x-[DEG]-[EGQ]-x-[ADE]-x-[AGS]-[AS] Occurences: 7(7) MACS_BOVIN : 149- 198: psnet PKKKKKrFSFKKSFKLSGFSFKKNKKEaGEGGEAEGAAGASAeGGkDeAS ggaaa MACS_CHICK : 115- 164: ssset PKKKKKrFSFKKSFKLSGFSFKKNKKEaGEGAESEGGAAAAAeGGkEeAA aaape MACS_HUMAN : 150- 199: psnet PKKKKKrFSFKKSFKLSGFSFKKNKKEaGEGGEAEAPAAEGGkDEaAgGA aaaaa MACS_MOUSE : 143- 192: psset PKKKKKrFSFKKSFKLSGFSFKKSKKEsGEGAEAEGATAEGAkDEaAaAA ggega MACS_RAT : 143- 192: psset PKKKKKrFSFKKSFKLSGFSFKKSKKEaGEGAEAEGATADGAkDEaAaAA ggdaa MRP_MOUSE : 85- 132: apket PKKKKK-FSFKKPFKLSGLSFKRNRKE-GGGDSSASSPTEEEqEQgEmSA csdeg MRP_RABIT : 85- 132: ppket PKKKKK-FSFKKPFKLSGLSFKRNRKE-GGGDSSASSPTEEEqEQgEiGA cseeg D 4: 156.3329 7( 7) K-K-K-K-K-x(0,1)-F-S-F-K-K-[PS]-F-K-L-S-G-[FL]-S-F-K-[KR]-[NS]-[KR]-K-E-x(0,1)-G-[EG]-G-[ADG]-[ES]-[AS]-[AE]-[AGS]-[AGPS]-[APT]-[AGT]-[ADE]-[AEGS]-[AEG]-x-[DEG]-[EGQ]-x-[ADE]-x-[AGS]-[AS]-[ACG] Occurences: 7(7) MACS_BOVIN : 150- 199: snetp KKKKKrFSFKKSFKLSGFSFKKNKKEaGEGGEAEGAAGASAeGGkDeASG gaaaa MACS_CHICK : 116- 165: ssetp KKKKKrFSFKKSFKLSGFSFKKNKKEaGEGAESEGGAAAAAeGGkEeAAA aapea MACS_HUMAN : 151- 200: snetp KKKKKrFSFKKSFKLSGFSFKKNKKEaGEGGEAEAPAAEGGkDEaAgGAA aaaae MACS_MOUSE : 144- 193: ssetp KKKKKrFSFKKSFKLSGFSFKKSKKEsGEGAEAEGATAEGAkDEaAaAAG gegaa MACS_RAT : 144- 193: ssetp KKKKKrFSFKKSFKLSGFSFKKSKKEaGEGAEAEGATADGAkDEaAaAAG gdaaa MRP_MOUSE : 86- 133: pketp KKKKK-FSFKKPFKLSGLSFKRNRKE-GGGDSSASSPTEEEqEQgEmSAC sdegt MRP_RABIT : 86- 133: pketp KKKKK-FSFKKPFKLSGLSFKRNRKE-GGGDSSASSPTEEEqEQgEiGAC seegt E 5: 154.7562 9( 7) K-K-K-K-x(0,1)-F-S-F-K-K-[PS]-F-K-L-S-G-[FL]-S-F-K-[KR]-[NS]-[KR]-K-E-x(0,1)-G-[EG]-G-[ADG]-[ES]-[AS]-[AE]-[AGS]-[AGPS]-[APT]-[AGT]-[ADE]-[AEGS]-[AEG]-x-[DEG]-[EGQ]-x-[ADE]-x-[AGS]-[AS]-[ACG]-[AGS] Occurences: 9(7) MACS_BOVIN : 151- 200: netpk KKKKrFSFKKSFKLSGFSFKKNKKEaGEGGEAEGAAGASAeGGkDeASGG aaaaa MACS_CHICK : 117- 166: setpk KKKKrFSFKKSFKLSGFSFKKNKKEaGEGAESEGGAAAAAeGGkEeAAAA apeaa MACS_HUMAN : 152- 201: netpk KKKKrFSFKKSFKLSGFSFKKNKKEaGEGGEAEAPAAEGGkDEaAgGAAA aaaea MACS_MOUSE : 145- 194: setpk KKKKrFSFKKSFKLSGFSFKKSKKEsGEGAEAEGATAEGAkDEaAaAAGG egaaa MACS_RAT : 145- 194: setpk KKKKrFSFKKSFKLSGFSFKKSKKEaGEGAEAEGATADGAkDEaAaAAGG daaaa MRP_MOUSE : 86- 134: pketp KKKKkFSFKKPFKLSGLSFKRNRKE-GGGDSSASSPTEEEqEQgEmSACS degta MRP_MOUSE : 87- 134: ketpk KKKK-FSFKKPFKLSGLSFKRNRKE-GGGDSSASSPTEEEqEQgEmSACS degta MRP_RABIT : 86- 134: pketp KKKKkFSFKKPFKLSGLSFKRNRKE-GGGDSSASSPTEEEqEQgEiGACS eegta MRP_RABIT : 87- 134: ketpk KKKK-FSFKKPFKLSGLSFKRNRKE-GGGDSSASSPTEEEqEQgEiGACS eegta F 6: 153.2331 9( 7) K-K-K-x(0,1)-F-S-F-K-K-[PS]-F-K-L-S-G-[FL]-S-F-K-[KR]-[NS]-[KR]-K-E-x(0,1)-G-[EG]-G-[ADG]-[ES]-[AS]-[AE]-[AGS]-[AGPS]-[APT]-[AGT]-[ADE]-[AEGS]-[AEG]-x-[DEG]-[EGQ]-x-[ADE]-x-[AGS]-[AS]-[ACG]-[AGS]-[ADE] Occurences: 9(7) MACS_BOVIN : 152- 201: etpkk KKKrFSFKKSFKLSGFSFKKNKKEaGEGGEAEGAAGASAeGGkDeASGGA aaaag MACS_CHICK : 118- 167: etpkk KKKrFSFKKSFKLSGFSFKKNKKEaGEGAESEGGAAAAAeGGkEeAAAAA peaag MACS_HUMAN : 153- 202: etpkk KKKrFSFKKSFKLSGFSFKKNKKEaGEGGEAEAPAAEGGkDEaAgGAAAA aaeag MACS_MOUSE : 146- 195: etpkk KKKrFSFKKSFKLSGFSFKKSKKEsGEGAEAEGATAEGAkDEaAaAAGGE gaaap MACS_RAT : 146- 195: etpkk KKKrFSFKKSFKLSGFSFKKSKKEaGEGAEAEGATADGAkDEaAaAAGGD aaaap MRP_MOUSE : 87- 135: ketpk KKKkFSFKKPFKLSGLSFKRNRKE-GGGDSSASSPTEEEqEQgEmSACSD egtaq MRP_MOUSE : 88- 135: etpkk KKK-FSFKKPFKLSGLSFKRNRKE-GGGDSSASSPTEEEqEQgEmSACSD egtaq MRP_RABIT : 87- 135: ketpk KKKkFSFKKPFKLSGLSFKRNRKE-GGGDSSASSPTEEEqEQgEiGACSE egtap MRP_RABIT : 88- 135: etpkk KKK-FSFKKPFKLSGLSFKRNRKE-GGGDSSASSPTEEEqEQgEiGACSE egtap G 7: 150.1478 7( 7) F-S-F-K-K-[PS]-F-K-L-S-G-[FL]-S-F-K-[KR]-[NS]-[KR]-K-E-x(0,1)-G-x(0,1)-G-[AG]-[DE]-[AS]-[ES]-[AG]-[AGPS]-[AST]-[AGP]-[ADET]-[AEGS]-[AEG]-[EK]-[DGQ]-[EG]-x-[ADEG]-[AEG]-x-[AGS]-[AG]-[ACG]-[ADES]-x-[AE]-[AEG]-[AT] Occurences: 7(7) MACS_BOVIN : 156- 205: kkkkr FSFKKSFKLSGFSFKKNKKEaGeGGEAEGAAGASAEGGkDEaSGGAaAAA geaga MACS_CHICK : 122- 171: kkkkr FSFKKSFKLSGFSFKKNKKEaGeGAESEGGAAAAAEGGkEEaAAAApEAA ggeeg MACS_HUMAN : 157- 206: kkkkr FSFKKSFKLSGFSFKKNKKEaGeGGEAEAPAAEGGKDEaAGgAAAAaAEA gaasg MACS_MOUSE : 150- 199: kkkkr FSFKKSFKLSGFSFKKSKKEsGeGAEAEGATAEGAKDEaAAaAGGEgAAA pgeqa MACS_RAT : 150- 199: kkkkr FSFKKSFKLSGFSFKKSKKEaGeGAEAEGATADGAKDEaAAaAGGDaAAA pgeqa MRP_MOUSE : 91- 138: kkkkk FSFKKPFKLSGLSFKRNRKE-G-GGDSSASSPTEEEQEqGEmSACSdEGT aqegk MRP_RABIT : 91- 138: kkkkk FSFKKPFKLSGLSFKRNRKE-G-GGDSSASSPTEEEQEqGEiGACSeEGT apegk H 8: 149.0630 9( 7) K-K-x(0,1)-F-S-F-K-K-[PS]-F-K-L-S-G-[FL]-S-F-K-[KR]-[NS]-[KR]-K-E-x(0,1)-G-[EG]-G-[ADG]-[ES]-[AS]-[AE]-[AGS]-[AGPS]-[APT]-[AGT]-[ADE]-[AEGS]-[AEG]-x-[DEG]-[EGQ]-x-[ADE]-x-[AGS]-[AS]-[ACG]-[AGS]-[ADE] Occurences: 9(7) MACS_BOVIN : 153- 201: tpkkk KKrFSFKKSFKLSGFSFKKNKKEaGEGGEAEGAAGASAeGGkDeASGGA aaaag MACS_CHICK : 119- 167: tpkkk KKrFSFKKSFKLSGFSFKKNKKEaGEGAESEGGAAAAAeGGkEeAAAAA peaag MACS_HUMAN : 154- 202: tpkkk KKrFSFKKSFKLSGFSFKKNKKEaGEGGEAEAPAAEGGkDEaAgGAAAA aaeag MACS_MOUSE : 147- 195: tpkkk KKrFSFKKSFKLSGFSFKKSKKEsGEGAEAEGATAEGAkDEaAaAAGGE gaaap MACS_RAT : 147- 195: tpkkk KKrFSFKKSFKLSGFSFKKSKKEaGEGAEAEGATADGAkDEaAaAAGGD aaaap MRP_MOUSE : 88- 135: etpkk KKkFSFKKPFKLSGLSFKRNRKE-GGGDSSASSPTEEEqEQgEmSACSD egtaq MRP_MOUSE : 89- 135: tpkkk KK-FSFKKPFKLSGLSFKRNRKE-GGGDSSASSPTEEEqEQgEmSACSD egtaq MRP_RABIT : 88- 135: etpkk KKkFSFKKPFKLSGLSFKRNRKE-GGGDSSASSPTEEEqEQgEiGACSE egtap MRP_RABIT : 89- 135: tpkkk KK-FSFKKPFKLSGLSFKRNRKE-GGGDSSASSPTEEEqEQgEiGACSE egtap I 9: 148.6045 7( 7) S-F-K-K-[PS]-F-K-L-S-G-[FL]-S-F-K-[KR]-[NS]-[KR]-K-E-x(0,1)-G-x(0,1)-G-[AG]-[DE]-[AS]-[ES]-[AG]-[AGPS]-[AST]-[AGP]-[ADET]-[AEGS]-[AEG]-[EK]-[DGQ]-[EG]-x-[ADEG]-[AEG]-x-[AGS]-[AG]-[ACG]-[ADES]-x-[AE]-[AEG]-[AT]-[AGP] Occurences: 7(7) MACS_BOVIN : 157- 206: kkkrf SFKKSFKLSGFSFKKNKKEaGeGGEAEGAAGASAEGGkDEaSGGAaAAAG eagaa MACS_CHICK : 123- 172: kkkrf SFKKSFKLSGFSFKKNKKEaGeGAESEGGAAAAAEGGkEEaAAAApEAAG geegk MACS_HUMAN : 158- 207: kkkrf SFKKSFKLSGFSFKKNKKEaGeGGEAEAPAAEGGKDEaAGgAAAAaAEAG aasge MACS_MOUSE : 151- 200: kkkrf SFKKSFKLSGFSFKKSKKEsGeGAEAEGATAEGAKDEaAAaAGGEgAAAP geqag MACS_RAT : 151- 200: kkkrf SFKKSFKLSGFSFKKSKKEaGeGAEAEGATADGAKDEaAAaAGGDaAAAP geqag MRP_MOUSE : 92- 139: kkkkf SFKKPFKLSGLSFKRNRKE-G-GGDSSASSPTEEEQEqGEmSACSdEGTA qegka MRP_RABIT : 92- 139: kkkkf SFKKPFKLSGLSFKRNRKE-G-GGDSSASSPTEEEQEqGEiGACSeEGTA pegka J 10: 147.5230 9( 7) K-x(0,1)-F-S-F-K-K-[PS]-F-K-L-S-G-[FL]-S-F-K-[KR]-[NS]-[KR]-K-E-x(0,1)-G-[EG]-G-[ADG]-[ES]-[AS]-[AE]-[AGS]-[AGPS]-[APT]-[AGT]-[ADE]-[AEGS]-[AEG]-x-[DEG]-[EGQ]-x-[ADE]-x-[AGS]-[AS]-[ACG]-[AGS]-[ADE]-x-[AEG] Occurences: 9(7) MACS_BOVIN : 154- 203: pkkkk KrFSFKKSFKLSGFSFKKNKKEaGEGGEAEGAAGASAeGGkDeASGGAaA aagea MACS_CHICK : 120- 169: pkkkk KrFSFKKSFKLSGFSFKKNKKEaGEGAESEGGAAAAAeGGkEeAAAAApE aagge MACS_HUMAN : 155- 204: pkkkk KrFSFKKSFKLSGFSFKKNKKEaGEGGEAEAPAAEGGkDEaAgGAAAAaA eagaa MACS_MOUSE : 148- 197: pkkkk KrFSFKKSFKLSGFSFKKSKKEsGEGAEAEGATAEGAkDEaAaAAGGEgA aapge MACS_RAT : 148- 197: pkkkk KrFSFKKSFKLSGFSFKKSKKEaGEGAEAEGATADGAkDEaAaAAGGDaA aapge MRP_MOUSE : 89- 137: tpkkk KkFSFKKPFKLSGLSFKRNRKE-GGGDSSASSPTEEEqEQgEmSACSDeG taqeg MRP_MOUSE : 90- 137: pkkkk K-FSFKKPFKLSGLSFKRNRKE-GGGDSSASSPTEEEqEQgEmSACSDeG taqeg MRP_RABIT : 89- 137: tpkkk KkFSFKKPFKLSGLSFKRNRKE-GGGDSSASSPTEEEqEQgEiGACSEeG tapeg MRP_RABIT : 90- 137: pkkkk K-FSFKKPFKLSGLSFKRNRKE-GGGDSSASSPTEEEqEQgEiGACSEeG tapeg K 11: 146.4805 7( 7) S-F-K-K-[PS]-F-K-L-S-G-[FL]-S-F-K-[KR]-[NS]-[KR]-K-E-x(0,1)-G-[EG]-G-[ADG]-[ES]-[AS]-[AE]-[AGS]-[AGPS]-[APT]-[AGT]-[ADE]-[AEGS]-[AEG]-x-[DEG]-[EGQ]-x-[ADE]-x-[AGS]-[AS]-[ACG]-[AGS]-[ADE]-x-[AEG]-[AET]-A Occurences: 7(7) MACS_BOVIN : 157- 205: kkkrf SFKKSFKLSGFSFKKNKKEaGEGGEAEGAAGASAeGGkDeASGGAaAAA geaga MACS_CHICK : 123- 171: kkkrf SFKKSFKLSGFSFKKNKKEaGEGAESEGGAAAAAeGGkEeAAAAApEAA ggeeg MACS_HUMAN : 158- 206: kkkrf SFKKSFKLSGFSFKKNKKEaGEGGEAEAPAAEGGkDEaAgGAAAAaAEA gaasg MACS_MOUSE : 151- 199: kkkrf SFKKSFKLSGFSFKKSKKEsGEGAEAEGATAEGAkDEaAaAAGGEgAAA pgeqa MACS_RAT : 151- 199: kkkrf SFKKSFKLSGFSFKKSKKEaGEGAEAEGATADGAkDEaAaAAGGDaAAA pgeqa MRP_MOUSE : 92- 139: kkkkf SFKKPFKLSGLSFKRNRKE-GGGDSSASSPTEEEqEQgEmSACSDeGTA qegka MRP_RABIT : 92- 139: kkkkf SFKKPFKLSGLSFKRNRKE-GGGDSSASSPTEEEqEQgEiGACSEeGTA pegka L 12: 138.8370 7( 7) S-P-[AS]-K-A-N-G-Q-E-N-G-H-V-[KR]-[SV]-N-G-D-[AL]-[ST]-P-x(2,3)-E-x(0,1)-G-x(2)-[EP]-x(2)-[ANQ]-[AGN]-[GNT]-[DGS]-[AES]-[AP]-[AP]-[AEG]-[AE]-[DT]-x-[DEK]-[AE]-x-[AE]-[APS]-[AGS]-[GPS] Occurences: 7(7) MACS_BOVIN : 26- 75: aavas SPSKANGQENGHVKVNGDASPaaaEpGakEelQANGSAPAADkEEpAAAG sgaas MACS_CHICK : 25- 74: eavaa SPSKANGQENGHVKVNGDASPaaaEaGkeEvqANGSAPAEETgKEeAASS epase MACS_HUMAN : 26- 75: aavas SPSKANGQENGHVKVNGDASPaaaEsGakEelQANGSAPAADkEEpAAAG sgaas MACS_MOUSE : 26- 75: aavas SPSKANGQENGHVKVNGDASPaaaEpGakEelQANGSAPAADkEEpASGS aatpa MACS_RAT : 26- 75: aavas SPSKANGQENGHVKVNGDASPaaaEpGakEelQANGSAPAADkEEpASGG aatpa MRP_MOUSE : 21- 68: eaaga SPAKANGQENGHVRSNGDLTPkg-E-GesPpvNGTDEAAGATgDAiEPAP psqea MRP_RABIT : 21- 68: eaaga SPAKANGQENGHVKSNGDLTPkg-E-GesPpvNGTDEAAGATgDAiEPAP psqga M 13: 134.6669 7( 7) P-[AS]-K-A-N-G-Q-E-N-G-H-V-[KR]-[SV]-N-G-D-[AL]-[ST]-P-x(2,3)-E-x(0,1)-G-x(2)-[EP]-x(2)-[ANQ]-[AGN]-[GNT]-[DGS]-[AES]-[AP]-[AP]-[AEG]-[AE]-[DT]-x-[DEK]-[AE]-x-[AE]-[APS]-[AGS]-[GPS] Occurences: 7(7) MACS_BOVIN : 27- 75: avass PSKANGQENGHVKVNGDASPaaaEpGakEelQANGSAPAADkEEpAAAG sgaas MACS_CHICK : 26- 74: avaas PSKANGQENGHVKVNGDASPaaaEaGkeEvqANGSAPAEETgKEeAASS epase MACS_HUMAN : 27- 75: avass PSKANGQENGHVKVNGDASPaaaEsGakEelQANGSAPAADkEEpAAAG sgaas MACS_MOUSE : 27- 75: avass PSKANGQENGHVKVNGDASPaaaEpGakEelQANGSAPAADkEEpASGS aatpa MACS_RAT : 27- 75: avass PSKANGQENGHVKVNGDASPaaaEpGakEelQANGSAPAADkEEpASGG aatpa MRP_MOUSE : 22- 68: aagas PAKANGQENGHVRSNGDLTPkg-E-GesPpvNGTDEAAGATgDAiEPAP psqea MRP_RABIT : 22- 68: aagas PAKANGQENGHVKSNGDLTPkg-E-GesPpvNGTDEAAGATgDAiEPAP psqga N 14: 132.1832 7( 7) K-A-N-G-Q-E-N-G-H-V-[KR]-[SV]-N-G-D-[AL]-[ST]-P-x(2,3)-E-x(0,1)-G-x(2)-[EP]-x(2)-[ANQ]-[AGN]-[GNT]-[DGS]-[AES]-[AP]-[AP]-[AEG]-[AE]-[DT]-x-[DEK]-[AE]-x-[AE]-[APS]-[AGS]-[GPS]-x-[AGPS]-[AQT] Occurences: 7(7) MACS_BOVIN : 29- 78: assps KANGQENGHVKVNGDASPaaaEpGakEelQANGSAPAADkEEpAAAGsGA aspaa MACS_CHICK : 28- 77: aasps KANGQENGHVKVNGDASPaaaEaGkeEvqANGSAPAEETgKEeAASSePA sekea MACS_HUMAN : 29- 78: assps KANGQENGHVKVNGDASPaaaEsGakEelQANGSAPAADkEEpAAAGsGA aspss MACS_MOUSE : 29- 78: assps KANGQENGHVKVNGDASPaaaEpGakEelQANGSAPAADkEEpASGSaAT paaae MACS_RAT : 29- 78: assps KANGQENGHVKVNGDASPaaaEpGakEelQANGSAPAADkEEpASGGaAT paaad MRP_MOUSE : 24- 71: gaspa KANGQENGHVRSNGDLTPkg-E-GesPpvNGTDEAAGATgDAiEPAPpSQ eaeak MRP_RABIT : 24- 71: gaspa KANGQENGHVKSNGDLTPkg-E-GesPpvNGTDEAAGATgDAiEPAPpSQ gaeak O 15: 124.7997 8( 7) A-x(3,4)-K-A-N-G-Q-E-N-G-H-V-[KR]-[SV]-N-G-D-[AL]-[ST]-P-x(2,3)-E-[AGPS]-[EG]-x(2)-[EP]-x(2)-[AGQ]-[ANT]-[DGN]-[EGS]-[AS]-[AP]-[AGP]-[AE]-[AET]-[DGT]-x(3)-[EP]-[AP]-[AS] Occurences: 8(7) MACS_BOVIN : 24- 73: geaav AsspsKANGQENGHVKVNGDASPaaaEPGakEelQANGSAPAADkeePAA agsga MACS_CHICK : 23- 72: pgeav AaspsKANGQENGHVKVNGDASPaaaEAGkeEvqANGSAPAEETgkeEAA ssepa MACS_CHICK : 24- 72: geava Asps-KANGQENGHVKVNGDASPaaaEAGkeEvqANGSAPAEETgkeEAA ssepa MACS_HUMAN : 24- 73: geaav AsspsKANGQENGHVKVNGDASPaaaESGakEelQANGSAPAADkeePAA agsga MACS_MOUSE : 24- 73: geaav AsspsKANGQENGHVKVNGDASPaaaEPGakEelQANGSAPAADkeePAS gsaat MACS_RAT : 24- 73: geaav AsspsKANGQENGHVKVNGDASPaaaEPGakEelQANGSAPAADkeePAS ggaat MRP_MOUSE : 20- 67: eeaag Aspa-KANGQENGHVRSNGDLTPkg-EGEspPvnGTDEAAGATGdaiEPA ppsqe MRP_RABIT : 20- 67: eeaag Aspa-KANGQENGHVKSNGDLTPkg-EGEspPvnGTDEAAGATGdaiEPA ppsqg P 16: 115.2549 7( 7) E-T-P-K-K-K-K-K-x(0,1)-F-S-F-K-K-[PS]-F-K-L-S-G-[FL]-S-F-K-[KR]-[NS]-[KR]-K-E-x(0,1)-G Occurences: 7(7) MACS_BOVIN : 147- 177: pspsn ETPKKKKKrFSFKKSFKLSGFSFKKNKKEaG eggea MACS_CHICK : 113- 143: pssss ETPKKKKKrFSFKKSFKLSGFSFKKNKKEaG egaes MACS_HUMAN : 148- 178: pspsn ETPKKKKKrFSFKKSFKLSGFSFKKNKKEaG eggea MACS_MOUSE : 141- 171: pspss ETPKKKKKrFSFKKSFKLSGFSFKKSKKEsG egaea MACS_RAT : 141- 171: pspss ETPKKKKKrFSFKKSFKLSGFSFKKSKKEaG egaea MRP_MOUSE : 83- 111: evapk ETPKKKKK-FSFKKPFKLSGLSFKRNRKE-G ggdss MRP_RABIT : 83- 111: dappk ETPKKKKK-FSFKKPFKLSGLSFKRNRKE-G ggdss Q 17: 111.0848 7( 7) T-P-K-K-K-K-K-x(0,1)-F-S-F-K-K-[PS]-F-K-L-S-G-[FL]-S-F-K-[KR]-[NS]-[KR]-K-E-x(0,1)-G Occurences: 7(7) MACS_BOVIN : 148- 177: spsne TPKKKKKrFSFKKSFKLSGFSFKKNKKEaG eggea MACS_CHICK : 114- 143: sssse TPKKKKKrFSFKKSFKLSGFSFKKNKKEaG egaes MACS_HUMAN : 149- 178: spsne TPKKKKKrFSFKKSFKLSGFSFKKNKKEaG eggea MACS_MOUSE : 142- 171: spsse TPKKKKKrFSFKKSFKLSGFSFKKSKKEsG egaea MACS_RAT : 142- 171: spsse TPKKKKKrFSFKKSFKLSGFSFKKSKKEaG egaea MRP_MOUSE : 84- 111: vapke TPKKKKK-FSFKKPFKLSGLSFKRNRKE-G ggdss MRP_RABIT : 84- 111: appke TPKKKKK-FSFKKPFKLSGLSFKRNRKE-G ggdss R 18: 106.9148 7( 7) P-K-K-K-K-K-x(0,1)-F-S-F-K-K-[PS]-F-K-L-S-G-[FL]-S-F-K-[KR]-[NS]-[KR]-K-E-x(0,1)-G Occurences: 7(7) MACS_BOVIN : 149- 177: psnet PKKKKKrFSFKKSFKLSGFSFKKNKKEaG eggea MACS_CHICK : 115- 143: ssset PKKKKKrFSFKKSFKLSGFSFKKNKKEaG egaes MACS_HUMAN : 150- 178: psnet PKKKKKrFSFKKSFKLSGFSFKKNKKEaG eggea MACS_MOUSE : 143- 171: psset PKKKKKrFSFKKSFKLSGFSFKKSKKEsG egaea MACS_RAT : 143- 171: psset PKKKKKrFSFKKSFKLSGFSFKKSKKEaG egaea MRP_MOUSE : 85- 111: apket PKKKKK-FSFKKPFKLSGLSFKRNRKE-G ggdss MRP_RABIT : 85- 111: ppket PKKKKK-FSFKKPFKLSGLSFKRNRKE-G ggdss S 19: 103.3093 7( 7) A-x(2)-A-S-x(0,1)-P-[AS]-K-A-N-G-Q-E-N-G-H-V-[KR]-[SV]-N-G-D-[AL]-[ST]-P-x-[AG]-[AE]-[EG]-x-[GS] Occurences: 7(7) MACS_BOVIN : 21- 52: erpge AavASsPSKANGQENGHVKVNGDASPaAAEpG akeel MACS_CHICK : 21- 51: ekpge AvaAS-PSKANGQENGHVKVNGDASPaAAEaG keevq MACS_HUMAN : 21- 52: erpge AavASsPSKANGQENGHVKVNGDASPaAAEsG akeel MACS_MOUSE : 21- 52: erpge AavASsPSKANGQENGHVKVNGDASPaAAEpG akeel MACS_RAT : 21- 52: erpge AavASsPSKANGQENGHVKVNGDASPaAAEpG akeel MRP_MOUSE : 17- 47: vtaee AagAS-PAKANGQENGHVRSNGDLTPkGEGeS ppvng MRP_RABIT : 17- 47: vtaee AagAS-PAKANGQENGHVKSNGDLTPkGEGeS ppvng T 20: 103.3093 7( 7) A-x(2)-A-x(0,1)-S-P-[AS]-K-A-N-G-Q-E-N-G-H-V-[KR]-[SV]-N-G-D-[AL]-[ST]-P-x-[AG]-[AE]-[EG]-x-[GS] Occurences: 7(7) MACS_BOVIN : 21- 52: erpge AavAsSPSKANGQENGHVKVNGDASPaAAEpG akeel MACS_CHICK : 21- 51: ekpge AvaA-SPSKANGQENGHVKVNGDASPaAAEaG keevq MACS_HUMAN : 21- 52: erpge AavAsSPSKANGQENGHVKVNGDASPaAAEsG akeel MACS_MOUSE : 21- 52: erpge AavAsSPSKANGQENGHVKVNGDASPaAAEpG akeel MACS_RAT : 21- 52: erpge AavAsSPSKANGQENGHVKVNGDASPaAAEpG akeel MRP_MOUSE : 17- 47: vtaee AagA-SPAKANGQENGHVRSNGDLTPkGEGeS ppvng MRP_RABIT : 17- 47: vtaee AagA-SPAKANGQENGHVKSNGDLTPkGEGeS ppvng Number of patterns evaluated by Pratt:25113 Total running time: 6 seconds