------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 23 sequences from file MALIC_ENZYMES PATTERN CONSERVATION: CM: min Nr of Seqs to Match 23 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename MALIC_ENZYMES.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: MAOC_FLAPR 647 MAOC_FLATR 648 MAOC_LYCES 573 MAOC_MAIZE 636 MAOC_ORYSA 638 MAOM_AMAHP 623 MAOM_ASCSU 643 MAOM_HUMAN 584 MAOM_SOLTU 626 MAON_SOLTU 601 MAOX_ANAPL 557 MAOX_BACST 478 MAOX_BACSU 582 MAOX_COLLI 557 MAOX_HAEIN 756 MAOX_MESCR 585 MAOX_MOUSE 572 MAOX_PHAVU 589 MAOX_POPTR 589 MAOX_RAT 572 MAOX_SCHPO 565 MAOX_YEAST 669 SFCA_ECOLI 438 Pratt run started at Thu Feb 6 20:12:56 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 19.8503 23( 23) F-x(2)-D-x(0,1)-Q-x(0,1)-G-T 2: 16.6802 35( 23) L-G-x-G-x(2)-G 3: 16.1802 23( 23) D-x-Q-x(0,1)-G-T 4: 16.1802 23( 23) P-x(2,3)-N-x(4)-F-x(4)-R 5: 15.6802 37( 23) L-x(1,2)-G-x(1,2)-G-x(2)-G 6: 15.6802 60( 23) L-x(0,1)-G-x(1,2)-G-x(2)-G 7: 15.6802 25( 23) F-x(2)-D-x(2)-G-x(0,2)-T 8: 15.6802 43( 23) D-x(1,2)-Q-x(0,1)-G-T 9: 15.6802 24( 23) F-x-D-x(0,1)-D-x(2,3)-G 10: 15.6802 23( 23) F-x(1,2)-D-D-x(1,2)-G 11: 15.6802 26( 23) F-x-D-x(1,2)-Q-x(2,3)-A 12: 15.6802 72( 23) L-G-x(1,2)-G-x(1,2)-G 13: 15.6802 41( 23) G-x(0,1)-L-G-x(1,2)-G 14: 15.6802 24( 23) G-x(4)-G-x-G-x(0,2)-G 15: 15.6802 28( 23) D-x(4,5)-L-x(1,2)-G-x(2)-G 16: 15.1802 27( 23) D-x(3,5)-G-x(1,2)-G-x(2)-G 17: 15.1802 30( 23) G-x(0,1)-A-x(0,2)-G-x(4)-G 18: 15.1802 25( 23) G-x(0,2)-A-G-x(4,5)-G 19: 15.1802 24( 23) G-x-G-x(0,1)-A-x(0,2)-G 20: 15.1802 37( 23) G-x(4)-G-x(1,2)-G-x(0,2)-I Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 43.9140 23( 23) F-x-[DV]-D-x(0,1)-Q-x(0,1)-G-T-[AGS]-x-[IV]-x(2)-[AG]-[AGST]-[ILV]-[ILM]-[AGNST]-[ACST] B 2: 40.7439 23( 23) F-x-[DV]-D-x(2)-G-T-[AGS]-x-[IV]-x(2)-[AG]-[AGST]-[ILV]-[ILM]-[AGNST]-[ACST] C 3: 37.0553 23( 23) D-x-Q-x(0,1)-G-T-[AGS]-x-[IV]-x(2)-[AG]-[AGST]-[ILV]-[ILM]-[AGNST]-[ACST] D 4: 36.5553 43( 23) D-x(1,2)-Q-x(0,1)-G-T-[AGS]-x-[IV]-x(2)-[AG]-[AGST]-[ILV]-[ILM]-[AGNST]-[ACST] E 5: 27.6352 36( 23) L-G-x(1,2)-G-[ACDNV]-x-G-x(2)-[AGI]-x(2)-[GIPV]-x-[ILMV]-[AEGS] F 6: 26.4694 31( 23) L-G-[AIL]-G-[DENS]-x-G-x(2)-[AGI]-x(2)-[ILPV] G 7: 24.1473 31( 23) G-x-[AG]-x-[AL]-G-x(1,2)-G-x(0,2)-I-[AGP] H 8: 24.1058 23( 23) P-x(2,3)-N-x-[DGV]-x-[ACG]-F-[PST]-x(3)-R I 9: 22.7841 24( 23) F-x-D-x(0,1)-D-x(2,3)-G-x-[AGIV]-x(4)-[AGQ]-[AGST] J 10: 22.7658 28( 23) D-x(4,5)-L-x(1,2)-G-[DES]-x-G-x(2)-[AGIL]-x(2)-[ILPV] K 11: 22.0982 52( 23) L-G-x(1,2)-G-x(1,2)-G-x(2)-[AGIV]-[AGIPV]-x-[GILP] L 12: 21.0200 24( 23) G-x(4)-G-[ILV]-G-x(0,2)-G-x(2)-[AGI] M 13: 20.1811 40( 23) G-x(0,1)-L-G-x(1,2)-G-x(2)-[AGIV]-x(2)-[AGIP] N 14: 19.9466 25( 23) F-x-D-x(1,2)-Q-x(2,3)-A-x(3)-[ALV]-[ADGNQS] O 15: 18.8688 23( 23) F-x-[DV]-D-x(0,1)-Q-x(0,1)-G P 16: 18.8553 23( 23) F-x(1,2)-D-D-x(1,2)-G-[ET] Q 17: 17.4194 29( 23) G-x(0,1)-A-x(0,2)-G-x(4)-G-[AILV] R 18: 15.6802 37( 23) L-x(1,2)-G-x(1,2)-G-x(2)-G S 19: 15.6802 24( 23) G-x(4)-G-x-G-x(0,2)-G T 20: 15.6802 28( 23) D-x(4,5)-L-x(1,2)-G-x(2)-G Best patterns with alignements: fitness hits(seqs) Pattern A 1: 43.9140 23( 23) F-x-[DV]-D-x(0,1)-Q-x(0,1)-G-T-[AGS]-x-[IV]-x(2)-[AG]-[AGST]-[ILV]-[ILM]-[AGNST]-[ACST] Occurences: 23(23) MAOC_FLAPR : 359- 377: tthlv FnDDiQ-GTAsVvlAGLISA lklvg MAOC_FLATR : 360- 378: tthlv FnDDiQ-GTAsVvlGGLISA lklvg MAOC_LYCES : 286- 304: tshlv FnDDiQ-GTAsVvlAGLMAA lnlvg MAOC_MAIZE : 348- 366: kshlv FnDDiQ-GTAsVvlAGLLAA lkmvg MAOC_ORYSA : 350- 368: kshlv FnDDiQ-GTAsVvlAGLLSS lkvvg MAOM_AMAHP : 306- 324: hkyrt FnVDvQ-GTSgVaiAGLLGA vraqg MAOM_ASCSU : 330- 348: dkytm FnDDiQ-GTAsVivAGLLTC trvtk MAOM_HUMAN : 276- 294: ekyct FnDDiQ-GTAaValAGLLAA qkvis MAOM_SOLTU : 309- 327: nnyrm FnDDiQ-GTAgVaiAGLLGA vraqg MAON_SOLTU : 292- 310: kkfcm FnDDiQ-GTAgValAGLLGT vraqg MAOX_ANAPL : 255- 273: nkyct FnDDiQ-GTAsVavAGLLAA lritk MAOX_BACST : 234- 252: ldipv FhDD-QhGTAvVllAGLLNA lkivd MAOX_BACSU : 287- 305: heilt FnDDiQ-GTGaItlAGVLAA mkktg MAOX_COLLI : 255- 273: nkyct FnDDiQ-GTAsVavAGLLAA lritk MAOX_HAEIN : 159- 177: mnipv FhDD-QhGTAiIsaAAIINS lrivg MAOX_MESCR : 297- 315: tthlv FnDDiQ-GTAsVvlAGLIAS lkllg MAOX_MOUSE : 266- 284: nkyct FnDDiQ-GTAsVavAGLLAA lritk MAOX_PHAVU : 301- 319: sshlv FnDDiQ-GTAsVvlAGLLAS lklvg MAOX_POPTR : 303- 321: tthlv FnDDiQ-GTAaVvlAGLISA lkllg MAOX_RAT : 266- 284: nkyct FnDDiQ-GTAsVavAGLLAA lritk MAOX_SCHPO : 269- 287: pdiac FnDDiQ-GTGaValAAIIGA lhvtk MAOX_YEAST : 351- 369: yelps FnDDiQ-GTGaVvmASLIAA lkhtn SFCA_ECOLI : 276- 294: neics FnDDiQ-GTAaVtvGTLIAA sraag B 2: 40.7439 23( 23) F-x-[DV]-D-x(2)-G-T-[AGS]-x-[IV]-x(2)-[AG]-[AGST]-[ILV]-[ILM]-[AGNST]-[ACST] Occurences: 23(23) MAOC_FLAPR : 359- 377: tthlv FnDDiqGTAsVvlAGLISA lklvg MAOC_FLATR : 360- 378: tthlv FnDDiqGTAsVvlGGLISA lklvg MAOC_LYCES : 286- 304: tshlv FnDDiqGTAsVvlAGLMAA lnlvg MAOC_MAIZE : 348- 366: kshlv FnDDiqGTAsVvlAGLLAA lkmvg MAOC_ORYSA : 350- 368: kshlv FnDDiqGTAsVvlAGLLSS lkvvg MAOM_AMAHP : 306- 324: hkyrt FnVDvqGTSgVaiAGLLGA vraqg MAOM_ASCSU : 330- 348: dkytm FnDDiqGTAsVivAGLLTC trvtk MAOM_HUMAN : 276- 294: ekyct FnDDiqGTAaValAGLLAA qkvis MAOM_SOLTU : 309- 327: nnyrm FnDDiqGTAgVaiAGLLGA vraqg MAON_SOLTU : 292- 310: kkfcm FnDDiqGTAgValAGLLGT vraqg MAOX_ANAPL : 255- 273: nkyct FnDDiqGTAsVavAGLLAA lritk MAOX_BACST : 234- 252: ldipv FhDDqhGTAvVllAGLLNA lkivd MAOX_BACSU : 287- 305: heilt FnDDiqGTGaItlAGVLAA mkktg MAOX_COLLI : 255- 273: nkyct FnDDiqGTAsVavAGLLAA lritk MAOX_HAEIN : 159- 177: mnipv FhDDqhGTAiIsaAAIINS lrivg MAOX_MESCR : 297- 315: tthlv FnDDiqGTAsVvlAGLIAS lkllg MAOX_MOUSE : 266- 284: nkyct FnDDiqGTAsVavAGLLAA lritk MAOX_PHAVU : 301- 319: sshlv FnDDiqGTAsVvlAGLLAS lklvg MAOX_POPTR : 303- 321: tthlv FnDDiqGTAaVvlAGLISA lkllg MAOX_RAT : 266- 284: nkyct FnDDiqGTAsVavAGLLAA lritk MAOX_SCHPO : 269- 287: pdiac FnDDiqGTGaValAAIIGA lhvtk MAOX_YEAST : 351- 369: yelps FnDDiqGTGaVvmASLIAA lkhtn SFCA_ECOLI : 276- 294: neics FnDDiqGTAaVtvGTLIAA sraag C 3: 37.0553 23( 23) D-x-Q-x(0,1)-G-T-[AGS]-x-[IV]-x(2)-[AG]-[AGST]-[ILV]-[ILM]-[AGNST]-[ACST] Occurences: 23(23) MAOC_FLAPR : 362- 377: lvfnd DiQ-GTAsVvlAGLISA lklvg MAOC_FLATR : 363- 378: lvfnd DiQ-GTAsVvlGGLISA lklvg MAOC_LYCES : 289- 304: lvfnd DiQ-GTAsVvlAGLMAA lnlvg MAOC_MAIZE : 351- 366: lvfnd DiQ-GTAsVvlAGLLAA lkmvg MAOC_ORYSA : 353- 368: lvfnd DiQ-GTAsVvlAGLLSS lkvvg MAOM_AMAHP : 309- 324: rtfnv DvQ-GTSgVaiAGLLGA vraqg MAOM_ASCSU : 333- 348: tmfnd DiQ-GTAsVivAGLLTC trvtk MAOM_HUMAN : 279- 294: ctfnd DiQ-GTAaValAGLLAA qkvis MAOM_SOLTU : 312- 327: rmfnd DiQ-GTAgVaiAGLLGA vraqg MAON_SOLTU : 295- 310: cmfnd DiQ-GTAgValAGLLGT vraqg MAOX_ANAPL : 258- 273: ctfnd DiQ-GTAsVavAGLLAA lritk MAOX_BACST : 236- 252: ipvfh DdQhGTAvVllAGLLNA lkivd MAOX_BACSU : 290- 305: ltfnd DiQ-GTGaItlAGVLAA mkktg MAOX_COLLI : 258- 273: ctfnd DiQ-GTAsVavAGLLAA lritk MAOX_HAEIN : 161- 177: ipvfh DdQhGTAiIsaAAIINS lrivg MAOX_MESCR : 300- 315: lvfnd DiQ-GTAsVvlAGLIAS lkllg MAOX_MOUSE : 269- 284: ctfnd DiQ-GTAsVavAGLLAA lritk MAOX_PHAVU : 304- 319: lvfnd DiQ-GTAsVvlAGLLAS lklvg MAOX_POPTR : 306- 321: lvfnd DiQ-GTAaVvlAGLISA lkllg MAOX_RAT : 269- 284: ctfnd DiQ-GTAsVavAGLLAA lritk MAOX_SCHPO : 272- 287: acfnd DiQ-GTGaValAAIIGA lhvtk MAOX_YEAST : 354- 369: psfnd DiQ-GTGaVvmASLIAA lkhtn SFCA_ECOLI : 279- 294: csfnd DiQ-GTAaVtvGTLIAA sraag D 4: 36.5553 43( 23) D-x(1,2)-Q-x(0,1)-G-T-[AGS]-x-[IV]-x(2)-[AG]-[AGST]-[ILV]-[ILM]-[AGNST]-[ACST] Occurences: 43(23) MAOC_FLAPR : 361- 377: hlvfn DdiQ-GTAsVvlAGLISA lklvg MAOC_FLAPR : 362- 377: lvfnd Di-Q-GTAsVvlAGLISA lklvg MAOC_FLATR : 362- 378: hlvfn DdiQ-GTAsVvlGGLISA lklvg MAOC_FLATR : 363- 378: lvfnd Di-Q-GTAsVvlGGLISA lklvg MAOC_LYCES : 288- 304: hlvfn DdiQ-GTAsVvlAGLMAA lnlvg MAOC_LYCES : 289- 304: lvfnd Di-Q-GTAsVvlAGLMAA lnlvg MAOC_MAIZE : 350- 366: hlvfn DdiQ-GTAsVvlAGLLAA lkmvg MAOC_MAIZE : 351- 366: lvfnd Di-Q-GTAsVvlAGLLAA lkmvg MAOC_ORYSA : 352- 368: hlvfn DdiQ-GTAsVvlAGLLSS lkvvg MAOC_ORYSA : 353- 368: lvfnd Di-Q-GTAsVvlAGLLSS lkvvg MAOM_AMAHP : 309- 324: rtfnv Dv-Q-GTSgVaiAGLLGA vraqg MAOM_ASCSU : 332- 348: ytmfn DdiQ-GTAsVivAGLLTC trvtk MAOM_ASCSU : 333- 348: tmfnd Di-Q-GTAsVivAGLLTC trvtk MAOM_HUMAN : 278- 294: yctfn DdiQ-GTAaValAGLLAA qkvis MAOM_HUMAN : 279- 294: ctfnd Di-Q-GTAaValAGLLAA qkvis MAOM_SOLTU : 311- 327: yrmfn DdiQ-GTAgVaiAGLLGA vraqg MAOM_SOLTU : 312- 327: rmfnd Di-Q-GTAgVaiAGLLGA vraqg MAON_SOLTU : 294- 310: fcmfn DdiQ-GTAgValAGLLGT vraqg MAON_SOLTU : 295- 310: cmfnd Di-Q-GTAgValAGLLGT vraqg MAOX_ANAPL : 257- 273: yctfn DdiQ-GTAsVavAGLLAA lritk MAOX_ANAPL : 258- 273: ctfnd Di-Q-GTAsVavAGLLAA lritk MAOX_BACST : 236- 252: ipvfh Dd-QhGTAvVllAGLLNA lkivd MAOX_BACSU : 289- 305: iltfn DdiQ-GTGaItlAGVLAA mkktg MAOX_BACSU : 290- 305: ltfnd Di-Q-GTGaItlAGVLAA mkktg MAOX_COLLI : 257- 273: yctfn DdiQ-GTAsVavAGLLAA lritk MAOX_COLLI : 258- 273: ctfnd Di-Q-GTAsVavAGLLAA lritk MAOX_HAEIN : 161- 177: ipvfh Dd-QhGTAiIsaAAIINS lrivg MAOX_MESCR : 299- 315: hlvfn DdiQ-GTAsVvlAGLIAS lkllg MAOX_MESCR : 300- 315: lvfnd Di-Q-GTAsVvlAGLIAS lkllg MAOX_MOUSE : 268- 284: yctfn DdiQ-GTAsVavAGLLAA lritk MAOX_MOUSE : 269- 284: ctfnd Di-Q-GTAsVavAGLLAA lritk MAOX_PHAVU : 303- 319: hlvfn DdiQ-GTAsVvlAGLLAS lklvg MAOX_PHAVU : 304- 319: lvfnd Di-Q-GTAsVvlAGLLAS lklvg MAOX_POPTR : 305- 321: hlvfn DdiQ-GTAaVvlAGLISA lkllg MAOX_POPTR : 306- 321: lvfnd Di-Q-GTAaVvlAGLISA lkllg MAOX_RAT : 268- 284: yctfn DdiQ-GTAsVavAGLLAA lritk MAOX_RAT : 269- 284: ctfnd Di-Q-GTAsVavAGLLAA lritk MAOX_SCHPO : 271- 287: iacfn DdiQ-GTGaValAAIIGA lhvtk MAOX_SCHPO : 272- 287: acfnd Di-Q-GTGaValAAIIGA lhvtk MAOX_YEAST : 353- 369: lpsfn DdiQ-GTGaVvmASLIAA lkhtn MAOX_YEAST : 354- 369: psfnd Di-Q-GTGaVvmASLIAA lkhtn SFCA_ECOLI : 278- 294: icsfn DdiQ-GTAaVtvGTLIAA sraag SFCA_ECOLI : 279- 294: csfnd Di-Q-GTAaVtvGTLIAA sraag E 5: 27.6352 36( 23) L-G-x(1,2)-G-[ACDNV]-x-G-x(2)-[AGI]-x(2)-[GIPV]-x-[ILMV]-[AEGS] Occurences: 36(23) MAOC_FLAPR : 250- 265: dgeri LGl-GDlGcqGmgIpVG klsly MAOC_FLAPR : 252- 268: erilg LGdlGCqGmgIpvGkLS lytal MAOC_FLATR : 250- 265: dgeri LGl-GDlGcqGmgIpVG klaly MAOC_FLATR : 252- 268: erilg LGdlGCqGmgIpvGkLA lytal MAOC_LYCES : 178- 193: dgeri LGl-GDlGcqGmgIpVG klsly MAOC_LYCES : 180- 196: erilg LGdlGCqGmgIpvGkLS lysal MAOC_MAIZE : 239- 254: dgeri LGl-GDlGcqGmgIpVG klaly MAOC_MAIZE : 241- 257: erilg LGdlGCqGmgIpvGkLA lytal MAOC_ORYSA : 241- 256: dgeri LGl-GDlGcqGmgIpVG klsly MAOC_ORYSA : 243- 259: erilg LGdlGCqGmgIpvGkLS lytal MAOM_AMAHP : 198- 213: dgsri LGl-GDlGvhGigVaIG kldly MAOM_ASCSU : 221- 236: dgeri LGl-GDlGayGigIpVG klaly MAOM_ASCSU : 223- 239: erilg LGdlGAyGigIpvGkLA lyval MAOM_HUMAN : 167- 182: dgeri LGl-GDlGvyGmgIpVG klcly MAOM_SOLTU : 201- 216: dgsri LGl-GDlGiqGigIaIG kldly MAON_SOLTU : 184- 199: dgsri LGl-GDlGvqGigIpIG kldmy MAOX_ANAPL : 146- 161: dgeri LGl-GDlGcyGmgIpVG klaly MAOX_ANAPL : 148- 164: erilg LGdlGCyGmgIpvGkLA lytac MAOX_BACST : 152- 167: dgtav LGl-GDiGpyAamPvME gkaml MAOX_BACSU : 179- 194: dsesi LGi-GDwGvgGinIaIG klavy MAOX_COLLI : 146- 161: dgeri LGl-GDlGcyGmgIpVG klaly MAOX_COLLI : 148- 164: erilg LGdlGCyGmgIpvGkLA lytac MAOX_HAEIN : 77- 92: ngtav LGl-GNiGalAgkPvME gkgvl MAOX_MESCR : 188- 203: dgeri LGl-GDlGcqGmgIpVG klsly MAOX_MESCR : 190- 206: erilg LGdlGCqGmgIpvGkLS lysal MAOX_MOUSE : 157- 172: dgeri LGl-GDlGcnGmgIpVG klaly MAOX_MOUSE : 159- 175: erilg LGdlGCnGmgIpvGkLA lytac MAOX_PHAVU : 192- 207: dgeri LGl-GDlGcqGmgIpVG klsly MAOX_PHAVU : 194- 210: erilg LGdlGCqGmgIpvGkLS lytal MAOX_POPTR : 194- 209: dgeri LGl-GDlGcqGigIpVG klsly MAOX_POPTR : 196- 212: erilg LGdlGCqGigIpvGkLS lytal MAOX_RAT : 157- 172: dgeri LGl-GDlGcnGmgIpVG klaly MAOX_RAT : 159- 175: erilg LGdlGCnGmgIpvGkLA lytac MAOX_SCHPO : 161- 176: dsegi LGi-GDqGvgGvlIsVA kghlm MAOX_YEAST : 243- 258: dsegi LGi-GDqGigGvrIaIS klalm SFCA_ECOLI : 168- 183: dgeri LGl-GDqGigGmgIpIG klsly F 6: 26.4694 31( 23) L-G-[AIL]-G-[DENS]-x-G-x(2)-[AGI]-x(2)-[ILPV] Occurences: 31(23) MAOC_FLAPR : 250- 262: dgeri LGLGDlGcqGmgI pvgkl MAOC_FLAPR : 393- 405: hkflf LGAGEaGtgIaeL ialei MAOC_FLATR : 250- 262: dgeri LGLGDlGcqGmgI pvgkl MAOC_FLATR : 394- 406: qkflf LGAGEaGtgIaeL ialei MAOC_LYCES : 178- 190: dgeri LGLGDlGcqGmgI pvgkl MAOC_LYCES : 320- 332: htflf LGAGEaGtgIaeL ialem MAOC_MAIZE : 239- 251: dgeri LGLGDlGcqGmgI pvgkl MAOC_MAIZE : 382- 394: qtylf LGAGEaGtgIaeL ialei MAOC_ORYSA : 241- 253: dgeri LGLGDlGcqGmgI pvgkl MAOC_ORYSA : 384- 396: htylf LGAGEaGtgIaeL ialei MAOM_AMAHP : 198- 210: dgsri LGLGDlGvhGigV aigkl MAOM_ASCSU : 221- 233: dgeri LGLGDlGayGigI pvgkl MAOM_HUMAN : 167- 179: dgeri LGLGDlGvyGmgI pvgkl MAOM_SOLTU : 201- 213: dgsri LGLGDlGiqGigI aigkl MAON_SOLTU : 184- 196: dgsri LGLGDlGvqGigI pigkl MAOX_ANAPL : 146- 158: dgeri LGLGDlGcyGmgI pvgkl MAOX_BACST : 152- 164: dgtav LGLGDiGpyAamP vmegk MAOX_BACSU : 179- 191: dsesi LGIGDwGvgGinI aigkl MAOX_COLLI : 146- 158: dgeri LGLGDlGcyGmgI pvgkl MAOX_HAEIN : 77- 89: ngtav LGLGNiGalAgkP vmegk MAOX_MESCR : 188- 200: dgeri LGLGDlGcqGmgI pvgkl MAOX_MESCR : 331- 343: hkflf LGAGEaGtgIaeL ialem MAOX_MOUSE : 157- 169: dgeri LGLGDlGcnGmgI pvgkl MAOX_PHAVU : 192- 204: dgeri LGLGDlGcqGmgI pvgkl MAOX_PHAVU : 335- 347: htflf LGAGEaGtgIaeL iavev MAOX_POPTR : 194- 206: dgeri LGLGDlGcqGigI pvgkl MAOX_POPTR : 337- 349: htflf LGAGEaGtgIaeL ialem MAOX_RAT : 157- 169: dgeri LGLGDlGcnGmgI pvgkl MAOX_SCHPO : 161- 173: dsegi LGIGDqGvgGvlI svakg MAOX_YEAST : 243- 255: dsegi LGIGDqGigGvrI aiskl SFCA_ECOLI : 168- 180: dgeri LGLGDqGigGmgI pigkl G 7: 24.1473 31( 23) G-x-[AG]-x-[AL]-G-x(1,2)-G-x(0,2)-I-[AGP] Occurences: 31(23) MAOC_FLAPR : 251- 263: geril GlGdLGcqGmgIP vgkls MAOC_FLAPR : 394- 403: kflfl GaGeAGt-G--IA elial MAOC_FLATR : 251- 263: geril GlGdLGcqGmgIP vgkla MAOC_FLATR : 395- 404: kflfl GaGeAGt-G--IA elial MAOC_LYCES : 179- 191: geril GlGdLGcqGmgIP vgkls MAOC_LYCES : 321- 330: tflfl GaGeAGt-G--IA elial MAOC_MAIZE : 240- 252: geril GlGdLGcqGmgIP vgkla MAOC_MAIZE : 383- 392: tylfl GaGeAGt-G--IA elial MAOC_ORYSA : 242- 254: geril GlGdLGcqGmgIP vgkls MAOC_ORYSA : 385- 394: tylfl GaGeAGt-G--IA elial MAOM_AMAHP : 199- 209: gsril GlGdLGvhG--IG vaigk MAOM_ASCSU : 222- 232: geril GlGdLGayG--IG ipvgk MAOM_ASCSU : 222- 234: geril GlGdLGayGigIP vgkla MAOM_HUMAN : 168- 180: geril GlGdLGvyGmgIP vgklc MAOM_SOLTU : 202- 212: gsril GlGdLGiqG--IG iaigk MAOM_SOLTU : 202- 214: gsril GlGdLGiqGigIA igkld MAON_SOLTU : 185- 195: gsril GlGdLGvqG--IG ipigk MAON_SOLTU : 185- 197: gsril GlGdLGvqGigIP igkld MAOX_ANAPL : 147- 159: geril GlGdLGcyGmgIP vgkla MAOX_BACST : 148- 158: avvsd GtAvLGl-Gd-IG pyaam MAOX_BACSU : 322- 331: rvvif GaGsAGi-G--IA dqird MAOX_COLLI : 147- 159: geril GlGdLGcyGmgIP vgkla MAOX_HAEIN : 73- 83: avisn GtAvLGl-Gn-IG alagk MAOX_MESCR : 189- 201: geril GlGdLGcqGmgIP vgkls MAOX_MESCR : 332- 341: kflfl GaGeAGt-G--IA elial MAOX_MOUSE : 158- 170: geril GlGdLGcnGmgIP vgkla MAOX_PHAVU : 193- 205: geril GlGdLGcqGmgIP vgkls MAOX_PHAVU : 336- 345: tflfl GaGeAGt-G--IA eliav MAOX_POPTR : 195- 205: geril GlGdLGcqG--IG ipvgk MAOX_POPTR : 195- 207: geril GlGdLGcqGigIP vgkls MAOX_POPTR : 338- 347: tflfl GaGeAGt-G--IA elial MAOX_RAT : 158- 170: geril GlGdLGcnGmgIP vgkla MAOX_SCHPO : 304- 313: rimif GaGtAGv-G--IA nqiva MAOX_YEAST : 386- 395: rvliy GaGsAGl-G--IA dqivn SFCA_ECOLI : 311- 320: kivfl GaGsAGc-G--IA emiis H 8: 24.1058 23( 23) P-x(2,3)-N-x-[DGV]-x-[ACG]-F-[PST]-x(3)-R Occurences: 23(23) MAOC_FLAPR : 115- 128: sllrd Phh-NkGlAFTekeR dahyl MAOC_FLATR : 115- 128: sllrd Phh-NkGlAFTekeR dahfl MAOC_LYCES : 43- 56: sllrn Phy-NkGlAFSereR dthyl MAOC_MAIZE : 104- 117: tllrd Phh-NkGlAFTeeeR dghyl MAOC_ORYSA : 106- 119: tllrd Phh-NkGlAFSekeR dahyl MAOM_AMAHP : 53- 66: dilqd Pwf-NkGtAFSmteR drldl MAOM_ASCSU : 84- 97: ellke Prl-NkGmGFSlyeR qylgl MAOM_HUMAN : 32- 45: plmln Prt-NkGmAFTlqeR qmlgl MAOM_SOLTU : 56- 69: dilhd Pwf-NkGtAFSfteR drlhi MAON_SOLTU : 39- 52: dilhd Pwf-NkDtGFPmteR drlgl MAOX_ANAPL : 11- 24: evlrd Phl-NkGmAFTleeR qqlni MAOX_BACST : 388- 402: grsdy PnqiNnVlCFPgifR galdc MAOX_BACSU : 42- 55: evlsi Ptl-NkGvAFSleeR qelgl MAOX_COLLI : 11- 24: evlrd Phl-NkGmAFTleeR qqlni MAOX_HAEIN : 315- 329: grsdy PnqvNnVlCFPfifR galdv MAOX_MESCR : 53- 66: sllrd Pqh-NkGlAFTekeR dahfl MAOX_MOUSE : 22- 35: lltrd Phl-NkDlAFTleeR qqlni MAOX_PHAVU : 57- 70: sllrd Pry-NkGlAFTegeR dahyl MAOX_POPTR : 59- 72: tllrd Phh-NkGlAFTekeR dahyl MAOX_RAT : 22- 35: lltrd Phl-NkDlAFTleeR qqlki MAOX_SCHPO : 22- 35: tllns Pry-NkDtAFTpeeR qkfei MAOX_YEAST : 107- 120: qllns Plf-NkGsAFTqeeR eafnl SFCA_ECOLI : 33- 46: vllef Pfl-NkGsAFSmeeR rnfnl I 9: 22.7841 24( 23) F-x-D-x(0,1)-D-x(2,3)-G-x-[AGIV]-x(4)-[AGQ]-[AGST] Occurences: 24(23) MAOC_FLAPR : 359- 373: tthlv FnD-Diq-GtAsvvlAG lisal MAOC_FLATR : 360- 374: tthlv FnD-Diq-GtAsvvlGG lisal MAOC_LYCES : 286- 300: tshlv FnD-Diq-GtAsvvlAG lmaal MAOC_MAIZE : 348- 362: kshlv FnD-Diq-GtAsvvlAG llaal MAOC_ORYSA : 350- 364: kshlv FnD-Diq-GtAsvvlAG llssl MAOM_AMAHP : 492- 508: asgsp FkDvDlgnGkIghvnQG nnmyl MAOM_ASCSU : 330- 344: dkytm FnD-Diq-GtAsvivAG lltct MAOM_HUMAN : 276- 290: ekyct FnD-Diq-GtAavalAG llaaq MAOM_SOLTU : 309- 323: nnyrm FnD-Diq-GtAgvaiAG llgav MAOM_SOLTU : 495- 511: asgsp FkDvDlgnGhVghcnQA nnmfl MAON_SOLTU : 292- 306: kkfcm FnD-Diq-GtAgvalAG llgtv MAOX_ANAPL : 255- 269: nkyct FnD-Diq-GtAsvavAG llaal MAOX_BACST : 234- 248: ldipv FhD-Dqh-GtAvvllAG llnal MAOX_BACSU : 287- 301: heilt FnD-Diq-GtGaitlAG vlaam MAOX_COLLI : 255- 269: nkyct FnD-Diq-GtAsvavAG llaal MAOX_HAEIN : 159- 173: mnipv FhD-Dqh-GtAiisaAA iinsl MAOX_MESCR : 297- 311: tthlv FnD-Diq-GtAsvvlAG liasl MAOX_MOUSE : 266- 280: nkyct FnD-Diq-GtAsvavAG llaal MAOX_PHAVU : 301- 315: sshlv FnD-Diq-GtAsvvlAG llasl MAOX_POPTR : 303- 317: tthlv FnD-Diq-GtAavvlAG lisal MAOX_RAT : 266- 280: nkyct FnD-Diq-GtAsvavAG llaal MAOX_SCHPO : 269- 283: pdiac FnD-Diq-GtGavalAA iigal MAOX_YEAST : 351- 365: yelps FnD-Diq-GtGavvmAS liaal SFCA_ECOLI : 276- 290: neics FnD-Diq-GtAavtvGT liaas J 10: 22.7658 28( 23) D-x(4,5)-L-x(1,2)-G-[DES]-x-G-x(2)-[AGIL]-x(2)-[ILPV] Occurences: 28(23) MAOC_FLAPR : 245- 262: vivvt Dgeri-LglGDlGcqGmgI pvgkl MAOC_FLAPR : 387- 405: ggsla DhkflfLgaGEaGtgIaeL ialei MAOC_FLATR : 245- 262: vivvt Dgeri-LglGDlGcqGmgI pvgkl MAOC_FLATR : 388- 406: ggsla DqkflfLgaGEaGtgIaeL ialei MAOC_LYCES : 173- 190: vivvt Dgeri-LglGDlGcqGmgI pvgkl MAOC_MAIZE : 234- 251: vicvt Dgeri-LglGDlGcqGmgI pvgkl MAOC_ORYSA : 236- 253: vivvt Dgeri-LglGDlGcqGmgI pvgkl MAOM_AMAHP : 193- 210: mivvt Dgsri-LglGDlGvhGigV aigkl MAOM_ASCSU : 216- 233: aivvt Dgeri-LglGDlGayGigI pvgkl MAOM_HUMAN : 162- 179: avvvt Dgeri-LglGDlGvyGmgI pvgkl MAOM_SOLTU : 196- 213: mivvt Dgsri-LglGDlGiqGigI aigkl MAON_SOLTU : 179- 196: mivlt Dgsri-LglGDlGvqGigI pigkl MAOX_ANAPL : 141- 158: aivvt Dgeri-LglGDlGcyGmgI pvgkl MAOX_BACST : 147- 164: vavvs Dgtav-LglGDiGpyAamP vmegk MAOX_BACSU : 174- 191: livat Dsesi-LgiGDwGvgGinI aigkl MAOX_COLLI : 141- 158: aivvt Dgeri-LglGDlGcyGmgI pvgkl MAOX_HAEIN : 550- 567: slgya DalvcgLf-GSyGkhLasI rdiig MAOX_MESCR : 183- 200: vivvt Dgeri-LglGDlGcqGmgI pvgkl MAOX_MESCR : 325- 343: ggtla DhkflfLgaGEaGtgIaeL ialem MAOX_MOUSE : 152- 169: aivvt Dgeri-LglGDlGcnGmgI pvgkl MAOX_PHAVU : 187- 204: vivvt Dgeri-LglGDlGcqGmgI pvgkl MAOX_PHAVU : 329- 347: ggtla DhtflfLgaGEaGtgIaeL iavev MAOX_POPTR : 189- 206: vivvt Dgeri-LglGDlGcqGigI pvgkl MAOX_POPTR : 331- 349: ggsla DhtflfLgaGEaGtgIaeL ialem MAOX_RAT : 152- 169: aivvt Dgeri-LglGDlGcnGmgI pvgkl MAOX_SCHPO : 156- 173: yiiit Dsegi-LgiGDqGvgGvlI svakg MAOX_YEAST : 238- 255: yivvs Dsegi-LgiGDqGigGvrI aiskl SFCA_ECOLI : 163- 180: vivvt Dgeri-LglGDqGigGmgI pigkl K 11: 22.0982 52( 23) L-G-x(1,2)-G-x(1,2)-G-x(2)-[AGIV]-[AGIPV]-x-[GILP] Occurences: 52(23) MAOC_FLAPR : 252- 265: erilg LGdlGcqGmgIPvG klsly MAOC_FLAPR : 255- 267: lglgd LGcqGm-GipVGkL slyta MAOC_FLAPR : 393- 405: hkflf LGa-GeaGtgIAeL ialei MAOC_FLATR : 252- 265: erilg LGdlGcqGmgIPvG klaly MAOC_FLATR : 255- 267: lglgd LGcqGm-GipVGkL alyta MAOC_FLATR : 394- 406: qkflf LGa-GeaGtgIAeL ialei MAOC_LYCES : 180- 193: erilg LGdlGcqGmgIPvG klsly MAOC_LYCES : 183- 195: lglgd LGcqGm-GipVGkL slysa MAOC_LYCES : 320- 332: htflf LGa-GeaGtgIAeL ialem MAOC_MAIZE : 241- 254: erilg LGdlGcqGmgIPvG klaly MAOC_MAIZE : 244- 256: lglgd LGcqGm-GipVGkL alyta MAOC_MAIZE : 382- 394: qtylf LGa-GeaGtgIAeL ialei MAOC_ORYSA : 243- 256: erilg LGdlGcqGmgIPvG klsly MAOC_ORYSA : 246- 258: lglgd LGcqGm-GipVGkL slyta MAOC_ORYSA : 384- 396: htylf LGa-GeaGtgIAeL ialei MAOM_AMAHP : 200- 213: srilg LGdlGvhGigVAiG kldly MAOM_AMAHP : 203- 215: lglgd LGvhGi-GvaIGkL dlyva MAOM_ASCSU : 221- 233: dgeri LGl-GdlGayGIgI pvgkl MAOM_ASCSU : 223- 236: erilg LGdlGayGigIPvG klaly MAOM_ASCSU : 226- 238: lglgd LGayGi-GipVGkL alyva MAOM_HUMAN : 169- 182: erilg LGdlGvyGmgIPvG klcly MAOM_HUMAN : 172- 184: lglgd LGvyGm-GipVGkL clyta MAOM_SOLTU : 201- 213: dgsri LGl-GdlGiqGIgI aigkl MAOM_SOLTU : 203- 216: srilg LGdlGiqGigIAiG kldly MAOM_SOLTU : 206- 218: lglgd LGiqGi-GiaIGkL dlyva MAON_SOLTU : 184- 196: dgsri LGl-GdlGvqGIgI pigkl MAON_SOLTU : 186- 199: srilg LGdlGvqGigIPiG kldmy MAON_SOLTU : 189- 201: lglgd LGvqGi-GipIGkL dmyva MAOX_ANAPL : 148- 161: erilg LGdlGcyGmgIPvG klaly MAOX_ANAPL : 151- 163: lglgd LGcyGm-GipVGkL alyta MAOX_BACST : 152- 164: dgtav LGl-GdiGpyAAmP vmegk MAOX_BACSU : 179- 191: dsesi LGi-GdwGvgGInI aigkl MAOX_COLLI : 148- 161: erilg LGdlGcyGmgIPvG klaly MAOX_COLLI : 151- 163: lglgd LGcyGm-GipVGkL alyta MAOX_HAEIN : 77- 89: ngtav LGl-GniGalAGkP vmegk MAOX_MESCR : 190- 203: erilg LGdlGcqGmgIPvG klsly MAOX_MESCR : 193- 205: lglgd LGcqGm-GipVGkL slysa MAOX_MESCR : 331- 343: hkflf LGa-GeaGtgIAeL ialem MAOX_MOUSE : 159- 172: erilg LGdlGcnGmgIPvG klaly MAOX_MOUSE : 162- 174: lglgd LGcnGm-GipVGkL alyta MAOX_PHAVU : 194- 207: erilg LGdlGcqGmgIPvG klsly MAOX_PHAVU : 197- 209: lglgd LGcqGm-GipVGkL slyta MAOX_PHAVU : 335- 347: htflf LGa-GeaGtgIAeL iavev MAOX_POPTR : 194- 206: dgeri LGl-GdlGcqGIgI pvgkl MAOX_POPTR : 196- 209: erilg LGdlGcqGigIPvG klsly MAOX_POPTR : 199- 211: lglgd LGcqGi-GipVGkL slyta MAOX_POPTR : 337- 349: htflf LGa-GeaGtgIAeL ialem MAOX_RAT : 159- 172: erilg LGdlGcnGmgIPvG klaly MAOX_RAT : 162- 174: lglgd LGcnGm-GipVGkL alyta MAOX_SCHPO : 161- 173: dsegi LGi-GdqGvgGVlI svakg MAOX_YEAST : 243- 255: dsegi LGi-GdqGigGVrI aiskl SFCA_ECOLI : 170- 182: erilg LGdqGi-GgmGIpI gklsl SFCA_ECOLI : 170- 183: erilg LGdqGigGmgIPiG klsly L 12: 21.0200 24( 23) G-x(4)-G-[ILV]-G-x(0,2)-G-x(2)-[AGI] Occurences: 24(23) MAOC_FLAPR : 246- 259: ivvtd GerilGLGdlGcqG mgipv MAOC_FLATR : 246- 259: ivvtd GerilGLGdlGcqG mgipv MAOC_LYCES : 174- 187: ivvtd GerilGLGdlGcqG mgipv MAOC_MAIZE : 235- 248: icvtd GerilGLGdlGcqG mgipv MAOC_ORYSA : 237- 250: ivvtd GerilGLGdlGcqG mgipv MAOM_AMAHP : 194- 207: ivvtd GsrilGLGdlGvhG igvai MAOM_ASCSU : 217- 230: ivvtd GerilGLGdlGayG igipv MAOM_HUMAN : 163- 176: vvvtd GerilGLGdlGvyG mgipv MAOM_SOLTU : 197- 210: ivvtd GsrilGLGdlGiqG igiai MAON_SOLTU : 180- 193: ivltd GsrilGLGdlGvqG igipi MAOX_ANAPL : 142- 155: ivvtd GerilGLGdlGcyG mgipv MAOX_BACST : 148- 161: avvsd GtavlGLGdiGpyA ampvm MAOX_BACSU : 180- 191: sesil GigdwGVG--GinI aigkl MAOX_COLLI : 142- 155: ivvtd GerilGLGdlGcyG mgipv MAOX_HAEIN : 73- 86: avisn GtavlGLGniGalA gkpvm MAOX_MESCR : 184- 197: ivvtd GerilGLGdlGcqG mgipv MAOX_MOUSE : 153- 166: ivvtd GerilGLGdlGcnG mgipv MAOX_PHAVU : 188- 201: ivvtd GerilGLGdlGcqG mgipv MAOX_POPTR : 190- 203: ivvtd GerilGLGdlGcqG igipv MAOX_RAT : 153- 166: ivvtd GerilGLGdlGcnG mgipv MAOX_SCHPO : 162- 173: segil GigdqGVG--GvlI svakg MAOX_YEAST : 244- 255: segil GigdqGIG--GvrI aiskl SFCA_ECOLI : 164- 177: ivvtd GerilGLGdqGigG mgipi SFCA_ECOLI : 169- 180: geril GlgdqGIG--GmgI pigkl SFCA_ECOLI : 169- 182: geril GlgdqGIGgmGipI gklsl M 13: 20.1811 40( 23) G-x(0,1)-L-G-x(1,2)-G-x(2)-[AGIV]-x(2)-[AGIP] Occurences: 40(23) MAOC_FLAPR : 251- 262: geril G-LGdlGcqGmgI pvgkl MAOC_FLAPR : 253- 265: rilgl GdLGcqGmgIpvG klsly MAOC_FLATR : 251- 262: geril G-LGdlGcqGmgI pvgkl MAOC_FLATR : 253- 265: rilgl GdLGcqGmgIpvG klaly MAOC_LYCES : 179- 190: geril G-LGdlGcqGmgI pvgkl MAOC_LYCES : 181- 193: rilgl GdLGcqGmgIpvG klsly MAOC_MAIZE : 240- 251: geril G-LGdlGcqGmgI pvgkl MAOC_MAIZE : 242- 254: rilgl GdLGcqGmgIpvG klaly MAOC_MAIZE : 543- 553: ayifp G-LGl-GlvIsgA vrvhe MAOC_ORYSA : 242- 253: geril G-LGdlGcqGmgI pvgkl MAOC_ORYSA : 244- 256: rilgl GdLGcqGmgIpvG klsly MAOM_AMAHP : 201- 213: rilgl GdLGvhGigVaiG kldly MAOM_ASCSU : 222- 233: geril G-LGdlGayGigI pvgkl MAOM_ASCSU : 224- 236: rilgl GdLGayGigIpvG klaly MAOM_HUMAN : 168- 179: geril G-LGdlGvyGmgI pvgkl MAOM_HUMAN : 170- 182: rilgl GdLGvyGmgIpvG klcly MAOM_SOLTU : 202- 213: gsril G-LGdlGiqGigI aigkl MAOM_SOLTU : 204- 216: rilgl GdLGiqGigIaiG kldly MAON_SOLTU : 185- 196: gsril G-LGdlGvqGigI pigkl MAON_SOLTU : 187- 199: rilgl GdLGvqGigIpiG kldmy MAOX_ANAPL : 147- 158: geril G-LGdlGcyGmgI pvgkl MAOX_ANAPL : 149- 161: rilgl GdLGcyGmgIpvG klaly MAOX_BACST : 153- 164: gtavl G-LGdiGpyAamP vmegk MAOX_BACSU : 490- 500: afafp G-LGl-GsiVaeA riitp MAOX_COLLI : 147- 158: geril G-LGdlGcyGmgI pvgkl MAOX_COLLI : 149- 161: rilgl GdLGcyGmgIpvG klaly MAOX_HAEIN : 78- 89: gtavl G-LGniGalAgkP vmegk MAOX_MESCR : 189- 200: geril G-LGdlGcqGmgI pvgkl MAOX_MESCR : 191- 203: rilgl GdLGcqGmgIpvG klsly MAOX_MOUSE : 158- 169: geril G-LGdlGcnGmgI pvgkl MAOX_MOUSE : 160- 172: rilgl GdLGcnGmgIpvG klaly MAOX_PHAVU : 193- 204: geril G-LGdlGcqGmgI pvgkl MAOX_PHAVU : 195- 207: rilgl GdLGcqGmgIpvG klsly MAOX_POPTR : 195- 206: geril G-LGdlGcqGigI pvgkl MAOX_POPTR : 197- 209: rilgl GdLGcqGigIpvG klsly MAOX_RAT : 158- 169: geril G-LGdlGcnGmgI pvgkl MAOX_RAT : 160- 172: rilgl GdLGcnGmgIpvG klaly MAOX_SCHPO : 159- 170: itdse GiLGi-GdqGvgG vlisv MAOX_YEAST : 241- 252: vsdse GiLGi-GdqGigG vriai SFCA_ECOLI : 169- 180: geril G-LGdqGigGmgI pigkl N 14: 19.9466 25( 23) F-x-D-x(1,2)-Q-x(2,3)-A-x(3)-[ALV]-[ADGNQS] Occurences: 25(23) MAOC_FLAPR : 359- 372: tthlv FnDdiQgt-AsvvLA glisa MAOC_FLATR : 360- 373: tthlv FnDdiQgt-AsvvLG glisa MAOC_LYCES : 286- 299: tshlv FnDdiQgt-AsvvLA glmaa MAOC_MAIZE : 348- 361: kshlv FnDdiQgt-AsvvLA gllaa MAOC_ORYSA : 350- 363: kshlv FnDdiQgt-AsvvLA gllss MAOM_AMAHP : 284- 297: nvivq FeDi-QnkwAltlLQ ryrhk MAOM_ASCSU : 330- 343: dkytm FnDdiQgt-AsviVA glltc MAOM_HUMAN : 276- 289: ekyct FnDdiQgt-AavaLA gllaa MAOM_HUMAN : 276- 290: ekyct FnDdiQgtaAvalAG llaaq MAOM_SOLTU : 287- 300: hvivq FeDf-QskwAfklLQ ryrnn MAON_SOLTU : 270- 283: kavvq FeDf-QakwAfetLD ryrkk MAON_SOLTU : 292- 305: kkfcm FnDdiQgt-AgvaLA gllgt MAOX_ANAPL : 255- 268: nkyct FnDdiQgt-AsvaVA gllaa MAOX_BACST : 234- 247: ldipv FhDd-QhgtAvvlLA gllna MAOX_BACSU : 287- 301: heilt FnDdiQgtgAitlAG vlaam MAOX_COLLI : 255- 268: nkyct FnDdiQgt-AsvaVA gllaa MAOX_HAEIN : 159- 172: mnipv FhDd-QhgtAiisAA aiins MAOX_MESCR : 297- 310: tthlv FnDdiQgt-AsvvLA glias MAOX_MOUSE : 266- 279: nkyct FnDdiQgt-AsvaVA gllaa MAOX_PHAVU : 301- 314: sshlv FnDdiQgt-AsvvLA gllas MAOX_POPTR : 303- 316: tthlv FnDdiQgt-AavvLA glisa MAOX_POPTR : 303- 317: tthlv FnDdiQgtaAvvlAG lisal MAOX_RAT : 266- 279: nkyct FnDdiQgt-AsvaVA gllaa MAOX_SCHPO : 269- 283: pdiac FnDdiQgtgAvalAA iigal MAOX_YEAST : 351- 365: yelps FnDdiQgtgAvvmAS liaal SFCA_ECOLI : 254- 267: dvllq FeDfaQkn-AmplLN ryrne SFCA_ECOLI : 276- 289: neics FnDdiQgt-AavtVG tliaa O 15: 18.8688 23( 23) F-x-[DV]-D-x(0,1)-Q-x(0,1)-G Occurences: 23(23) MAOC_FLAPR : 359- 365: tthlv FnDDiQ-G tasvv MAOC_FLATR : 360- 366: tthlv FnDDiQ-G tasvv MAOC_LYCES : 286- 292: tshlv FnDDiQ-G tasvv MAOC_MAIZE : 348- 354: kshlv FnDDiQ-G tasvv MAOC_ORYSA : 350- 356: kshlv FnDDiQ-G tasvv MAOM_AMAHP : 306- 312: hkyrt FnVDvQ-G tsgva MAOM_ASCSU : 330- 336: dkytm FnDDiQ-G tasvi MAOM_HUMAN : 276- 282: ekyct FnDDiQ-G taava MAOM_SOLTU : 309- 315: nnyrm FnDDiQ-G tagva MAON_SOLTU : 292- 298: kkfcm FnDDiQ-G tagva MAOX_ANAPL : 255- 261: nkyct FnDDiQ-G tasva MAOX_BACST : 234- 240: ldipv FhDD-QhG tavvl MAOX_BACSU : 287- 293: heilt FnDDiQ-G tgait MAOX_COLLI : 255- 261: nkyct FnDDiQ-G tasva MAOX_HAEIN : 159- 165: mnipv FhDD-QhG taiis MAOX_MESCR : 297- 303: tthlv FnDDiQ-G tasvv MAOX_MOUSE : 266- 272: nkyct FnDDiQ-G tasva MAOX_PHAVU : 301- 307: sshlv FnDDiQ-G tasvv MAOX_POPTR : 303- 309: tthlv FnDDiQ-G taavv MAOX_RAT : 266- 272: nkyct FnDDiQ-G tasva MAOX_SCHPO : 269- 275: pdiac FnDDiQ-G tgava MAOX_YEAST : 351- 357: yelps FnDDiQ-G tgavv SFCA_ECOLI : 276- 282: neics FnDDiQ-G taavt P 16: 18.8553 23( 23) F-x(1,2)-D-D-x(1,2)-G-[ET] Occurences: 23(23) MAOC_FLAPR : 359- 366: tthlv Fn-DDiqGT asvvl MAOC_FLATR : 360- 367: tthlv Fn-DDiqGT asvvl MAOC_LYCES : 286- 293: tshlv Fn-DDiqGT asvvl MAOC_MAIZE : 348- 355: kshlv Fn-DDiqGT asvvl MAOC_ORYSA : 350- 357: kshlv Fn-DDiqGT asvvl MAOM_AMAHP : 166- 173: prgmy FssDDr-GE mmsmv MAOM_ASCSU : 330- 337: dkytm Fn-DDiqGT asviv MAOM_HUMAN : 276- 283: ekyct Fn-DDiqGT aaval MAOM_SOLTU : 309- 316: nnyrm Fn-DDiqGT agvai MAON_SOLTU : 292- 299: kkfcm Fn-DDiqGT agval MAOX_ANAPL : 255- 262: nkyct Fn-DDiqGT asvav MAOX_BACST : 234- 241: ldipv Fh-DDqhGT avvll MAOX_BACSU : 287- 294: heilt Fn-DDiqGT gaitl MAOX_COLLI : 255- 262: nkyct Fn-DDiqGT asvav MAOX_HAEIN : 159- 166: mnipv Fh-DDqhGT aiisa MAOX_MESCR : 297- 304: tthlv Fn-DDiqGT asvvl MAOX_MOUSE : 266- 273: nkyct Fn-DDiqGT asvav MAOX_PHAVU : 301- 308: sshlv Fn-DDiqGT asvvl MAOX_POPTR : 303- 310: tthlv Fn-DDiqGT aavvl MAOX_RAT : 266- 273: nkyct Fn-DDiqGT asvav MAOX_SCHPO : 269- 276: pdiac Fn-DDiqGT gaval MAOX_YEAST : 351- 358: yelps Fn-DDiqGT gavvm SFCA_ECOLI : 276- 283: neics Fn-DDiqGT aavtv Q 17: 17.4194 29( 23) G-x(0,1)-A-x(0,2)-G-x(4)-G-[AILV] Occurences: 29(23) MAOC_FLAPR : 394- 402: kflfl G-A--GeagtGI aelia MAOC_FLATR : 395- 403: kflfl G-A--GeagtGI aelia MAOC_LYCES : 321- 329: tflfl G-A--GeagtGI aelia MAOC_MAIZE : 383- 391: tylfl G-A--GeagtGI aelia MAOC_ORYSA : 385- 393: tylfl G-A--GeagtGI aelia MAOM_AMAHP : 344- 352: kivva G-A--GssgvGV lnaar MAOM_ASCSU : 365- 373: kylff G-A--GaastGI aemiv MAOM_HUMAN : 311- 319: kilfl G-A--GeaalGI anliv MAOM_SOLTU : 315- 324: nddiq GtA--GvaiaGL lgavr MAOM_SOLTU : 347- 355: kivva G-A--GsagiGV lnaar MAON_SOLTU : 298- 307: nddiq GtA--GvalaGL lgtvr MAON_SOLTU : 330- 338: kivvv G-A--GsaglGV lkmal MAOX_ANAPL : 290- 298: tvlfq G-A--GeaalGI anliv MAOX_ANAPL : 449- 459: syvfp GvAl-GviacGL khige MAOX_BACST : 32- 41: iaaai GkA--GgdivGI dviss MAOX_BACSU : 322- 330: rvvif G-A--GsagiGI adqir MAOX_COLLI : 290- 298: tvlfq G-A--GeaalGI anliv MAOX_COLLI : 449- 459: syvfp GvAl-GviscGL khigd MAOX_HAEIN : 73- 84: avisn GtAvlGlgniGA lagkp MAOX_MESCR : 332- 340: kflfl G-A--GeagtGI aelia MAOX_MOUSE : 301- 309: tvlfq G-A--GeaalGI ahlvv MAOX_MOUSE : 460- 470: syvfp GvAl-GvvacGL rhidd MAOX_PHAVU : 336- 344: tflfl G-A--GeagtGI aelia MAOX_POPTR : 338- 346: tflfl G-A--GeagtGI aelia MAOX_RAT : 301- 309: tvlfq G-A--GeaalGI ahliv MAOX_RAT : 460- 470: syvfp GvAl-GvvacGL rhind MAOX_SCHPO : 304- 312: rimif G-A--GtagvGI anqiv MAOX_YEAST : 386- 394: rvliy G-A--GsaglGI adqiv SFCA_ECOLI : 311- 319: kivfl G-A--GsagcGI aemii R 18: 15.6802 37( 23) L-x(1,2)-G-x(1,2)-G-x(2)-G Occurences: 37(23) MAOC_FLAPR : 250- 259: dgeri LglGdlGcqG mgipv MAOC_FLAPR : 391- 399: adhkf LflGa-GeaG tgiae MAOC_FLATR : 250- 259: dgeri LglGdlGcqG mgipv MAOC_FLATR : 392- 400: adqkf LflGa-GeaG tgiae MAOC_LYCES : 178- 187: dgeri LglGdlGcqG mgipv MAOC_LYCES : 318- 326: sehtf LflGa-GeaG tgiae MAOC_MAIZE : 239- 248: dgeri LglGdlGcqG mgipv MAOC_MAIZE : 380- 388: aeqty LflGa-GeaG tgiae MAOC_ORYSA : 241- 250: dgeri LglGdlGcqG mgipv MAOC_ORYSA : 382- 390: aehty LflGa-GeaG tgiae MAOM_AMAHP : 198- 207: dgsri LglGdlGvhG igvai MAOM_ASCSU : 221- 230: dgeri LglGdlGayG igipv MAOM_HUMAN : 167- 176: dgeri LglGdlGvyG mgipv MAOM_SOLTU : 201- 210: dgsri LglGdlGiqG igiai MAON_SOLTU : 184- 193: dgsri LglGdlGvqG igipi MAON_SOLTU : 411- 419: vkphv Ll-GlsGvgG ifhee MAON_SOLTU : 562- 570: avaed LaeGh-GdvG vkelq MAOX_ANAPL : 146- 155: dgeri LglGdlGcyG mgipv MAOX_BACST : 267- 274: dikvv Lt-Gi-GaaG iactk MAOX_BACSU : 179- 188: dsesi LgiGdwGvgG iniai MAOX_BACSU : 407- 415: akpti Li-GtsGvsG aftee MAOX_COLLI : 146- 155: dgeri LglGdlGcyG mgipv MAOX_HAEIN : 552- 561: gyada LvcGlfGsyG khlas MAOX_MESCR : 188- 197: dgeri LglGdlGcqG mgipv MAOX_MESCR : 329- 337: adhkf LflGa-GeaG tgiae MAOX_MOUSE : 157- 166: dgeri LglGdlGcnG mgipv MAOX_PHAVU : 192- 201: dgeri LglGdlGcqG mgipv MAOX_PHAVU : 333- 341: adhtf LflGa-GeaG tgiae MAOX_POPTR : 194- 203: dgeri LglGdlGcqG igipv MAOX_POPTR : 335- 343: adhtf LflGa-GeaG tgiae MAOX_RAT : 157- 166: dgeri LglGdlGcnG mgipv MAOX_SCHPO : 161- 170: dsegi LgiGdqGvgG vlisv MAOX_SCHPO : 387- 395: vkpti Ll-GcsGqpG kftek MAOX_YEAST : 243- 252: dsegi LgiGdqGigG vriai MAOX_YEAST : 383- 391: kdtrv LiyGa-GsaG lgiad SFCA_ECOLI : 168- 177: dgeri LglGdqGigG mgipi SFCA_ECOLI : 395- 403: vkpdn Li-GvsGqtG lftee S 19: 15.6802 24( 23) G-x(4)-G-x-G-x(0,2)-G Occurences: 24(23) MAOC_FLAPR : 246- 256: ivvtd GerilGlGdlG cqgmg MAOC_FLATR : 246- 256: ivvtd GerilGlGdlG cqgmg MAOC_LYCES : 174- 184: ivvtd GerilGlGdlG cqgmg MAOC_MAIZE : 235- 245: icvtd GerilGlGdlG cqgmg MAOC_ORYSA : 237- 247: ivvtd GerilGlGdlG cqgmg MAOM_AMAHP : 194- 204: ivvtd GsrilGlGdlG vhgig MAOM_ASCSU : 217- 227: ivvtd GerilGlGdlG aygig MAOM_HUMAN : 163- 173: vvvtd GerilGlGdlG vygmg MAOM_SOLTU : 197- 207: ivvtd GsrilGlGdlG iqgig MAON_SOLTU : 180- 190: ivltd GsrilGlGdlG vqgig MAOX_ANAPL : 142- 152: ivvtd GerilGlGdlG cygmg MAOX_BACST : 148- 158: avvsd GtavlGlGdiG pyaam MAOX_BACSU : 180- 188: sesil GigdwGvG--G iniai MAOX_COLLI : 142- 152: ivvtd GerilGlGdlG cygmg MAOX_HAEIN : 73- 83: avisn GtavlGlGniG alagk MAOX_MESCR : 184- 194: ivvtd GerilGlGdlG cqgmg MAOX_MOUSE : 153- 163: ivvtd GerilGlGdlG cngmg MAOX_PHAVU : 188- 198: ivvtd GerilGlGdlG cqgmg MAOX_POPTR : 190- 200: ivvtd GerilGlGdlG cqgig MAOX_RAT : 153- 163: ivvtd GerilGlGdlG cngmg MAOX_SCHPO : 162- 170: segil GigdqGvG--G vlisv MAOX_YEAST : 244- 252: segil GigdqGiG--G vriai SFCA_ECOLI : 164- 174: ivvtd GerilGlGdqG iggmg SFCA_ECOLI : 169- 177: geril GlgdqGiG--G mgipi SFCA_ECOLI : 169- 179: geril GlgdqGiGgmG ipigk T 20: 15.6802 28( 23) D-x(4,5)-L-x(1,2)-G-x(2)-G Occurences: 28(23) MAOC_FLAPR : 245- 256: vivvt Dgeri-LglGdlG cqgmg MAOC_FLAPR : 387- 399: ggsla DhkflfLgaGeaG tgiae MAOC_FLATR : 245- 256: vivvt Dgeri-LglGdlG cqgmg MAOC_FLATR : 388- 400: ggsla DqkflfLgaGeaG tgiae MAOC_LYCES : 173- 184: vivvt Dgeri-LglGdlG cqgmg MAOC_MAIZE : 234- 245: vicvt Dgeri-LglGdlG cqgmg MAOC_ORYSA : 236- 247: vivvt Dgeri-LglGdlG cqgmg MAOM_AMAHP : 193- 204: mivvt Dgsri-LglGdlG vhgig MAOM_ASCSU : 216- 227: aivvt Dgeri-LglGdlG aygig MAOM_HUMAN : 162- 173: avvvt Dgeri-LglGdlG vygmg MAOM_SOLTU : 196- 207: mivvt Dgsri-LglGdlG iqgig MAON_SOLTU : 179- 190: mivlt Dgsri-LglGdlG vqgig MAOX_ANAPL : 141- 152: aivvt Dgeri-LglGdlG cygmg MAOX_BACST : 147- 158: vavvs Dgtav-LglGdiG pyaam MAOX_BACSU : 174- 185: livat Dsesi-LgiGdwG vggin MAOX_COLLI : 141- 152: aivvt Dgeri-LglGdlG cygmg MAOX_HAEIN : 550- 561: slgya DalvcgLf-GsyG khlas MAOX_MESCR : 183- 194: vivvt Dgeri-LglGdlG cqgmg MAOX_MESCR : 325- 337: ggtla DhkflfLgaGeaG tgiae MAOX_MOUSE : 152- 163: aivvt Dgeri-LglGdlG cngmg MAOX_PHAVU : 187- 198: vivvt Dgeri-LglGdlG cqgmg MAOX_PHAVU : 329- 341: ggtla DhtflfLgaGeaG tgiae MAOX_POPTR : 189- 200: vivvt Dgeri-LglGdlG cqgig MAOX_POPTR : 331- 343: ggsla DhtflfLgaGeaG tgiae MAOX_RAT : 152- 163: aivvt Dgeri-LglGdlG cngmg MAOX_SCHPO : 156- 167: yiiit Dsegi-LgiGdqG vggvl MAOX_YEAST : 238- 249: yivvs Dsegi-LgiGdqG iggvr SFCA_ECOLI : 163- 174: vivvt Dgeri-LglGdqG iggmg Number of patterns evaluated by Pratt:9947 Total running time: 25 seconds