------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 5 sequences from file LYSYL_OXIDASE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 5 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename LYSYL_OXIDASE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: LYOX_BOVIN 96 LYOX_CHICK 420 LYOX_HUMAN 417 LYOX_MOUSE 411 LYOX_RAT 411 Pratt run started at Thu Feb 6 20:12:06 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 120.9315 5( 5) R-P-G-Y-G-T-G-Y-F-Q-Y-G-L-P-D-L-V-x-D-P-Y-Y-I-Q-A-S-T-Y-V-Q 2: 116.7614 5( 5) P-G-Y-G-T-G-Y-F-Q-Y-G-L-P-D-L-V-x-D-P-Y-Y-I-Q-A-S-T-Y-V-Q 3: 112.5914 5( 5) G-Y-G-T-G-Y-F-Q-Y-G-L-P-D-L-V-x-D-P-Y-Y-I-Q-A-S-T-Y-V-Q 4: 108.4213 5( 5) Y-G-T-G-Y-F-Q-Y-G-L-P-D-L-V-x-D-P-Y-Y-I-Q-A-S-T-Y-V-Q 5: 100.0812 5( 5) T-G-Y-F-Q-Y-G-L-P-D-L-V-x-D-P-Y-Y-I-Q-A-S-T-Y-V-Q 6: 95.9112 5( 5) G-Y-F-Q-Y-G-L-P-D-L-V-x-D-P-Y-Y-I-Q-A-S-T-Y-V-Q 7: 95.9112 5( 5) G-x(2)-Y-F-Q-Y-G-L-P-D-L-V-x-D-P-Y-Y-I-Q-A-S-T-Y-V-Q 8: 95.4112 5( 5) G-x(1,2)-Y-F-Q-Y-G-L-P-D-L-V-x-D-P-Y-Y-I-Q-A-S-T-Y-V-Q 9: 87.5711 5( 5) Y-x-Q-Y-G-L-P-D-L-V-x-D-P-Y-Y-I-Q-A-S-T-Y-V-Q 10: 87.0711 5( 5) Y-x(0,1)-Q-Y-G-L-P-D-L-V-x-D-P-Y-Y-I-Q-A-S-T-Y-V-Q 11: 82.4010 5( 5) F-P-Q-R-x(2)-N-Q-G-T-S-D-F-L-P-S-R-P-R-x-S-x(1,2)-E-x(1,2)-S 12: 82.4010 5( 5) V-x(2,3)-F-P-Q-R-x(2)-N-Q-G-T-S-D-F-L-P-S-R-P-R-x-S-x(1,2)-E 13: 79.2310 5( 5) Y-G-L-P-D-L-V-x-D-P-Y-Y-I-Q-A-S-T-Y-V-Q 14: 78.2310 5( 5) P-Q-R-x(2)-N-Q-G-T-S-D-F-L-P-S-R-P-R-x-S-x(1,2)-E-x(1,2)-S 15: 77.7310 5( 5) R-P-G-Y-G-T-G-Y-F-Q-Y-G-L-P-D-L-V-x(0,2)-P-x(1,2)-Y 16: 75.0609 5( 5) F-x(3)-L-P-D-L-V-x-D-P-Y-Y-I-Q-A-S-T-Y-V-Q 17: 74.5609 5( 5) Q-x(1,2)-L-P-D-L-V-x-D-P-Y-Y-I-Q-A-S-T-Y-V-Q 18: 74.0609 5( 5) V-S-V-N-P-S-Y-L-V-P-E-S-D-Y-x-N-N-x(0,1)-V-x(0,1)-R 19: 74.0609 5( 5) Q-R-x(2)-N-Q-G-T-S-D-F-L-P-S-R-P-R-x-S-x(1,2)-E-x(1,2)-S 20: 73.5609 5( 5) P-G-Y-G-T-G-Y-F-Q-Y-G-L-P-D-L-V-x(0,2)-P-x(1,2)-Y Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 159.4317 5( 5) R-P-G-Y-G-T-G-Y-F-Q-Y-G-L-P-D-L-V-[AP]-D-P-Y-Y-I-Q-A-S-T-Y-V-Q-[KR]-[FM]-[PS]-x(4)-[NR]-x-[AG]-[AT]-[ES]-[DE]-x(2)-[LP]-[AS]-[RS] B 2: 157.8589 5( 5) P-G-Y-G-T-G-Y-F-Q-Y-G-L-P-D-L-V-[AP]-D-P-Y-Y-I-Q-A-S-T-Y-V-Q-[KR]-[FM]-[PS]-x(4)-[NR]-x-[AG]-[AT]-[ES]-[DE]-x(2)-[LP]-[AS]-[RS]-[PST] C 3: 153.6888 5( 5) G-Y-G-T-G-Y-F-Q-Y-G-L-P-D-L-V-[AP]-D-P-Y-Y-I-Q-A-S-T-Y-V-Q-[KR]-[FM]-[PS]-x(4)-[NR]-x-[AG]-[AT]-[ES]-[DE]-x(2)-[LP]-[AS]-[RS]-[PST] D 4: 152.6913 5( 5) Y-G-T-G-Y-F-Q-Y-G-L-P-D-L-V-[AP]-D-P-Y-Y-I-Q-A-S-T-Y-V-Q-[KR]-[FM]-[PS]-x(4)-[NR]-x-[AG]-[AT]-[ES]-[DE]-x(2)-[LP]-[AS]-[RS]-[PST]-x-[HY] E 5: 149.4677 5( 5) R-P-G-Y-G-T-G-Y-F-Q-Y-G-L-P-D-L-V-x(0,2)-P-x-Y-I-Q-A-S-T-Y-V-Q-[KR]-[FM]-[PS]-x(4)-[NR]-x-[AG]-[AT]-[ES]-[DE]-x(2)-[LP]-[AS]-[RS]-[PST] F 6: 147.5704 5( 5) T-G-Y-F-Q-Y-G-L-P-D-L-V-[AP]-D-P-Y-Y-I-Q-A-S-T-Y-V-Q-[KR]-[FM]-[PS]-x(4)-[NR]-x-[AG]-[AT]-[ES]-[DE]-x(2)-[LP]-[AS]-[RS]-[PST]-x-[HY]-[RS] G 7: 147.5704 5( 5) G-Y-F-Q-Y-G-L-P-D-L-V-[AP]-D-P-Y-Y-I-Q-A-S-T-Y-V-Q-[KR]-[FM]-[PS]-x(4)-[NR]-x-[AG]-[AT]-[ES]-[DE]-x(2)-[LP]-[AS]-[RS]-[PST]-x-[HY]-[RS]-x-D H 8: 145.2977 5( 5) P-G-Y-G-T-G-Y-F-Q-Y-G-L-P-D-L-V-x(0,2)-P-x-Y-I-Q-A-S-T-Y-V-Q-[KR]-[FM]-[PS]-x(4)-[NR]-x-[AG]-[AT]-[ES]-[DE]-x(2)-[LP]-[AS]-[RS]-[PST] I 9: 143.4004 5( 5) G-x(2)-Y-F-Q-Y-G-L-P-D-L-V-[AP]-D-P-Y-Y-I-Q-A-S-T-Y-V-Q-[KR]-[FM]-[PS]-x(4)-[NR]-x-[AG]-[AT]-[ES]-[DE]-x(2)-[LP]-[AS]-[RS]-[PST]-x-[HY]-[RS] J 10: 142.9004 5( 5) G-x(1,2)-Y-F-Q-Y-G-L-P-D-L-V-[AP]-D-P-Y-Y-I-Q-A-S-T-Y-V-Q-[KR]-[FM]-[PS]-x(4)-[NR]-x-[AG]-[AT]-[ES]-[DE]-x(2)-[LP]-[AS]-[RS]-[PST]-x-[HY]-[RS] K 11: 139.2303 5( 5) Y-x-Q-Y-G-L-P-D-L-V-[AP]-D-P-Y-Y-I-Q-A-S-T-Y-V-Q-[KR]-[FM]-[PS]-x(4)-[NR]-x-[AG]-[AT]-[ES]-[DE]-x(2)-[LP]-[AS]-[RS]-[PST]-x-[HY]-[RS]-x-D L 12: 138.7303 5( 5) Y-x(0,1)-Q-Y-G-L-P-D-L-V-[AP]-D-P-Y-Y-I-Q-A-S-T-Y-V-Q-[KR]-[FM]-[PS]-x(4)-[NR]-x-[AG]-[AT]-[ES]-[DE]-x(2)-[LP]-[AS]-[RS]-[PST]-x-[HY]-[RS]-x-D M 13: 137.2604 5( 5) Y-G-L-P-D-L-V-[AP]-D-P-Y-Y-I-Q-A-S-T-Y-V-Q-[KR]-[FM]-[PS]-x(4)-[NR]-x-[AG]-[AT]-[ES]-[DE]-x(2)-[LP]-[AS]-[RS]-[PST]-x-[HY]-[RS]-x-D-x(2)-[DS]-[HY] N 14: 129.4178 5( 5) Q-x(1,2)-L-P-D-L-V-[AP]-D-P-Y-Y-I-Q-A-S-T-Y-V-Q-[KR]-[FM]-[PS]-x(4)-[NR]-x-[AG]-[AT]-[ES]-[DE]-x(2)-[LP]-[AS]-[RS]-[PST]-x-[HY]-[RS]-x-D-x(2)-[DS] O 15: 126.7202 5( 5) F-x(3)-L-P-D-L-V-[AP]-D-P-Y-Y-I-Q-A-S-T-Y-V-Q-[KR]-[FM]-[PS]-x(4)-[NR]-x-[AG]-[AT]-[ES]-[DE]-x(2)-[LP]-[AS]-[RS]-[PST]-x-[HY]-[RS]-x-D P 16: 117.3536 5( 5) F-P-Q-R-x(2)-N-Q-G-T-S-D-F-L-P-S-R-P-R-[HY]-S-x(1,2)-E-x(1,2)-S-x-[HY]-x(4)-[PS]-x(3)-[FV]-[PS]-[EH]-x-D-x(2)-[DN]-[AN]-[NSV]-[STV] Q 17: 113.1835 5( 5) P-Q-R-x(2)-N-Q-G-T-S-D-F-L-P-S-R-P-R-[HY]-S-x(1,2)-E-x(1,2)-S-x-[HY]-x(4)-[PS]-x(3)-[FV]-[PS]-[EH]-x-D-x(2)-[DN]-[AN]-[NSV]-[STV] R 18: 112.2011 5( 5) Q-R-x(2)-N-Q-G-T-S-D-F-L-P-S-R-P-R-[HY]-S-x(1,2)-E-x(1,2)-S-x-[HY]-x(4)-[PS]-x(3)-[FV]-[PS]-[EH]-x-D-x(2)-[DN]-[AN]-[NSV]-[STV]-x(3)-[GV] S 19: 105.4020 5( 5) V-S-V-N-P-S-Y-L-V-P-E-S-D-Y-[ST]-N-N-x(0,1)-V-x(0,1)-R-x-[DET]-[GI]-[HR]-[HY]-[AT]-x(3)-[AG]-x-[AS]-x-[GS]-[CP] T 20: 99.5970 5( 5) V-x(2,3)-F-P-Q-R-x(2)-N-Q-G-T-S-D-F-L-P-S-R-P-R-[HY]-S-x(1,2)-E-[FW]-x(4)-[QS]-x(3)-S-x(4)-[ES] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 159.4317 5( 5) R-P-G-Y-G-T-G-Y-F-Q-Y-G-L-P-D-L-V-[AP]-D-P-Y-Y-I-Q-A-S-T-Y-V-Q-[KR]-[FM]-[PS]-x(4)-[NR]-x-[AG]-[AT]-[ES]-[DE]-x(2)-[LP]-[AS]-[RS] Occurences: 5(5) LYOX_BOVIN : 2- 49: y RPGYGTGYFQYGLPDLVPDPYYIQASTYVQKFPqrxxNqGTSDflPSR prhsm LYOX_CHICK : 203- 250: qgsry RPGYGTGYFQYGLPDLVPDPYYIQASTYVQRMSmynlRcAAEEncLAS sayra LYOX_HUMAN : 200- 247: pggry RPGYGTGYFQYGLPDLVADPYYIQASTYVQKMSmynlRcAAEEncLAS tayra LYOX_MOUSE : 194- 241: pgsrn RPGYGTGYFQYGLPDLVPDPYYIQASTYVQKMSmynlRcAAEEncLAS sayra LYOX_RAT : 194- 241: sgsrh RPGYGTGYFQYGLPDLVPDPYYIQASTYVQKMSmynlRcAAEEncLAS sayra B 2: 157.8589 5( 5) P-G-Y-G-T-G-Y-F-Q-Y-G-L-P-D-L-V-[AP]-D-P-Y-Y-I-Q-A-S-T-Y-V-Q-[KR]-[FM]-[PS]-x(4)-[NR]-x-[AG]-[AT]-[ES]-[DE]-x(2)-[LP]-[AS]-[RS]-[PST] Occurences: 5(5) LYOX_BOVIN : 3- 50: yr PGYGTGYFQYGLPDLVPDPYYIQASTYVQKFPqrxxNqGTSDflPSRP rhsmd LYOX_CHICK : 204- 251: gsryr PGYGTGYFQYGLPDLVPDPYYIQASTYVQRMSmynlRcAAEEncLASS ayrad LYOX_HUMAN : 201- 248: ggryr PGYGTGYFQYGLPDLVADPYYIQASTYVQKMSmynlRcAAEEncLAST ayrad LYOX_MOUSE : 195- 242: gsrnr PGYGTGYFQYGLPDLVPDPYYIQASTYVQKMSmynlRcAAEEncLASS ayrad LYOX_RAT : 195- 242: gsrhr PGYGTGYFQYGLPDLVPDPYYIQASTYVQKMSmynlRcAAEEncLASS ayrad C 3: 153.6888 5( 5) G-Y-G-T-G-Y-F-Q-Y-G-L-P-D-L-V-[AP]-D-P-Y-Y-I-Q-A-S-T-Y-V-Q-[KR]-[FM]-[PS]-x(4)-[NR]-x-[AG]-[AT]-[ES]-[DE]-x(2)-[LP]-[AS]-[RS]-[PST] Occurences: 5(5) LYOX_BOVIN : 4- 50: yrp GYGTGYFQYGLPDLVPDPYYIQASTYVQKFPqrxxNqGTSDflPSRP rhsmd LYOX_CHICK : 205- 251: sryrp GYGTGYFQYGLPDLVPDPYYIQASTYVQRMSmynlRcAAEEncLASS ayrad LYOX_HUMAN : 202- 248: gryrp GYGTGYFQYGLPDLVADPYYIQASTYVQKMSmynlRcAAEEncLAST ayrad LYOX_MOUSE : 196- 242: srnrp GYGTGYFQYGLPDLVPDPYYIQASTYVQKMSmynlRcAAEEncLASS ayrad LYOX_RAT : 196- 242: srhrp GYGTGYFQYGLPDLVPDPYYIQASTYVQKMSmynlRcAAEEncLASS ayrad D 4: 152.6913 5( 5) Y-G-T-G-Y-F-Q-Y-G-L-P-D-L-V-[AP]-D-P-Y-Y-I-Q-A-S-T-Y-V-Q-[KR]-[FM]-[PS]-x(4)-[NR]-x-[AG]-[AT]-[ES]-[DE]-x(2)-[LP]-[AS]-[RS]-[PST]-x-[HY] Occurences: 5(5) LYOX_BOVIN : 5- 52: yrpg YGTGYFQYGLPDLVPDPYYIQASTYVQKFPqrxxNqGTSDflPSRPrH smdef LYOX_CHICK : 206- 253: ryrpg YGTGYFQYGLPDLVPDPYYIQASTYVQRMSmynlRcAAEEncLASSaY radvr LYOX_HUMAN : 203- 250: ryrpg YGTGYFQYGLPDLVADPYYIQASTYVQKMSmynlRcAAEEncLASTaY radvr LYOX_MOUSE : 197- 244: rnrpg YGTGYFQYGLPDLVPDPYYIQASTYVQKMSmynlRcAAEEncLASSaY radvr LYOX_RAT : 197- 244: rhrpg YGTGYFQYGLPDLVPDPYYIQASTYVQKMSmynlRcAAEEncLASSaY radvr E 5: 149.4677 5( 5) R-P-G-Y-G-T-G-Y-F-Q-Y-G-L-P-D-L-V-x(0,2)-P-x-Y-I-Q-A-S-T-Y-V-Q-[KR]-[FM]-[PS]-x(4)-[NR]-x-[AG]-[AT]-[ES]-[DE]-x(2)-[LP]-[AS]-[RS]-[PST] Occurences: 5(5) LYOX_BOVIN : 2- 50: y RPGYGTGYFQYGLPDLVpdPyYIQASTYVQKFPqrxxNqGTSDflPSRP rhsmd LYOX_CHICK : 203- 251: qgsry RPGYGTGYFQYGLPDLVpdPyYIQASTYVQRMSmynlRcAAEEncLASS ayrad LYOX_HUMAN : 200- 248: pggry RPGYGTGYFQYGLPDLVadPyYIQASTYVQKMSmynlRcAAEEncLAST ayrad LYOX_MOUSE : 194- 242: pgsrn RPGYGTGYFQYGLPDLVpdPyYIQASTYVQKMSmynlRcAAEEncLASS ayrad LYOX_RAT : 194- 242: sgsrh RPGYGTGYFQYGLPDLVpdPyYIQASTYVQKMSmynlRcAAEEncLASS ayrad F 6: 147.5704 5( 5) T-G-Y-F-Q-Y-G-L-P-D-L-V-[AP]-D-P-Y-Y-I-Q-A-S-T-Y-V-Q-[KR]-[FM]-[PS]-x(4)-[NR]-x-[AG]-[AT]-[ES]-[DE]-x(2)-[LP]-[AS]-[RS]-[PST]-x-[HY]-[RS] Occurences: 5(5) LYOX_BOVIN : 7- 53: rpgyg TGYFQYGLPDLVPDPYYIQASTYVQKFPqrxxNqGTSDflPSRPrHS mdefs LYOX_CHICK : 208- 254: rpgyg TGYFQYGLPDLVPDPYYIQASTYVQRMSmynlRcAAEEncLASSaYR advrd LYOX_HUMAN : 205- 251: rpgyg TGYFQYGLPDLVADPYYIQASTYVQKMSmynlRcAAEEncLASTaYR advrd LYOX_MOUSE : 199- 245: rpgyg TGYFQYGLPDLVPDPYYIQASTYVQKMSmynlRcAAEEncLASSaYR advrd LYOX_RAT : 199- 245: rpgyg TGYFQYGLPDLVPDPYYIQASTYVQKMSmynlRcAAEEncLASSaYR advrd G 7: 147.5704 5( 5) G-Y-F-Q-Y-G-L-P-D-L-V-[AP]-D-P-Y-Y-I-Q-A-S-T-Y-V-Q-[KR]-[FM]-[PS]-x(4)-[NR]-x-[AG]-[AT]-[ES]-[DE]-x(2)-[LP]-[AS]-[RS]-[PST]-x-[HY]-[RS]-x-D Occurences: 5(5) LYOX_BOVIN : 8- 55: pgygt GYFQYGLPDLVPDPYYIQASTYVQKFPqrxxNqGTSDflPSRPrHSmD efshy LYOX_CHICK : 209- 256: pgygt GYFQYGLPDLVPDPYYIQASTYVQRMSmynlRcAAEEncLASSaYRaD vrdyd LYOX_HUMAN : 206- 253: pgygt GYFQYGLPDLVADPYYIQASTYVQKMSmynlRcAAEEncLASTaYRaD vrdyd LYOX_MOUSE : 200- 247: pgygt GYFQYGLPDLVPDPYYIQASTYVQKMSmynlRcAAEEncLASSaYRaD vrdyd LYOX_RAT : 200- 247: pgygt GYFQYGLPDLVPDPYYIQASTYVQKMSmynlRcAAEEncLASSaYRaD vrdyd H 8: 145.2977 5( 5) P-G-Y-G-T-G-Y-F-Q-Y-G-L-P-D-L-V-x(0,2)-P-x-Y-I-Q-A-S-T-Y-V-Q-[KR]-[FM]-[PS]-x(4)-[NR]-x-[AG]-[AT]-[ES]-[DE]-x(2)-[LP]-[AS]-[RS]-[PST] Occurences: 5(5) LYOX_BOVIN : 3- 50: yr PGYGTGYFQYGLPDLVpdPyYIQASTYVQKFPqrxxNqGTSDflPSRP rhsmd LYOX_CHICK : 204- 251: gsryr PGYGTGYFQYGLPDLVpdPyYIQASTYVQRMSmynlRcAAEEncLASS ayrad LYOX_HUMAN : 201- 248: ggryr PGYGTGYFQYGLPDLVadPyYIQASTYVQKMSmynlRcAAEEncLAST ayrad LYOX_MOUSE : 195- 242: gsrnr PGYGTGYFQYGLPDLVpdPyYIQASTYVQKMSmynlRcAAEEncLASS ayrad LYOX_RAT : 195- 242: gsrhr PGYGTGYFQYGLPDLVpdPyYIQASTYVQKMSmynlRcAAEEncLASS ayrad I 9: 143.4004 5( 5) G-x(2)-Y-F-Q-Y-G-L-P-D-L-V-[AP]-D-P-Y-Y-I-Q-A-S-T-Y-V-Q-[KR]-[FM]-[PS]-x(4)-[NR]-x-[AG]-[AT]-[ES]-[DE]-x(2)-[LP]-[AS]-[RS]-[PST]-x-[HY]-[RS] Occurences: 5(5) LYOX_BOVIN : 6- 53: yrpgy GtgYFQYGLPDLVPDPYYIQASTYVQKFPqrxxNqGTSDflPSRPrHS mdefs LYOX_CHICK : 207- 254: yrpgy GtgYFQYGLPDLVPDPYYIQASTYVQRMSmynlRcAAEEncLASSaYR advrd LYOX_HUMAN : 204- 251: yrpgy GtgYFQYGLPDLVADPYYIQASTYVQKMSmynlRcAAEEncLASTaYR advrd LYOX_MOUSE : 198- 245: nrpgy GtgYFQYGLPDLVPDPYYIQASTYVQKMSmynlRcAAEEncLASSaYR advrd LYOX_RAT : 198- 245: hrpgy GtgYFQYGLPDLVPDPYYIQASTYVQKMSmynlRcAAEEncLASSaYR advrd J 10: 142.9004 5( 5) G-x(1,2)-Y-F-Q-Y-G-L-P-D-L-V-[AP]-D-P-Y-Y-I-Q-A-S-T-Y-V-Q-[KR]-[FM]-[PS]-x(4)-[NR]-x-[AG]-[AT]-[ES]-[DE]-x(2)-[LP]-[AS]-[RS]-[PST]-x-[HY]-[RS] Occurences: 5(5) LYOX_BOVIN : 6- 53: yrpgy GtgYFQYGLPDLVPDPYYIQASTYVQKFPqrxxNqGTSDflPSRPrHS mdefs LYOX_CHICK : 207- 254: yrpgy GtgYFQYGLPDLVPDPYYIQASTYVQRMSmynlRcAAEEncLASSaYR advrd LYOX_HUMAN : 204- 251: yrpgy GtgYFQYGLPDLVADPYYIQASTYVQKMSmynlRcAAEEncLASTaYR advrd LYOX_MOUSE : 198- 245: nrpgy GtgYFQYGLPDLVPDPYYIQASTYVQKMSmynlRcAAEEncLASSaYR advrd LYOX_RAT : 198- 245: hrpgy GtgYFQYGLPDLVPDPYYIQASTYVQKMSmynlRcAAEEncLASSaYR advrd K 11: 139.2303 5( 5) Y-x-Q-Y-G-L-P-D-L-V-[AP]-D-P-Y-Y-I-Q-A-S-T-Y-V-Q-[KR]-[FM]-[PS]-x(4)-[NR]-x-[AG]-[AT]-[ES]-[DE]-x(2)-[LP]-[AS]-[RS]-[PST]-x-[HY]-[RS]-x-D Occurences: 5(5) LYOX_BOVIN : 9- 55: gygtg YfQYGLPDLVPDPYYIQASTYVQKFPqrxxNqGTSDflPSRPrHSmD efshy LYOX_CHICK : 210- 256: gygtg YfQYGLPDLVPDPYYIQASTYVQRMSmynlRcAAEEncLASSaYRaD vrdyd LYOX_HUMAN : 207- 253: gygtg YfQYGLPDLVADPYYIQASTYVQKMSmynlRcAAEEncLASTaYRaD vrdyd LYOX_MOUSE : 201- 247: gygtg YfQYGLPDLVPDPYYIQASTYVQKMSmynlRcAAEEncLASSaYRaD vrdyd LYOX_RAT : 201- 247: gygtg YfQYGLPDLVPDPYYIQASTYVQKMSmynlRcAAEEncLASSaYRaD vrdyd L 12: 138.7303 5( 5) Y-x(0,1)-Q-Y-G-L-P-D-L-V-[AP]-D-P-Y-Y-I-Q-A-S-T-Y-V-Q-[KR]-[FM]-[PS]-x(4)-[NR]-x-[AG]-[AT]-[ES]-[DE]-x(2)-[LP]-[AS]-[RS]-[PST]-x-[HY]-[RS]-x-D Occurences: 5(5) LYOX_BOVIN : 9- 55: gygtg YfQYGLPDLVPDPYYIQASTYVQKFPqrxxNqGTSDflPSRPrHSmD efshy LYOX_CHICK : 210- 256: gygtg YfQYGLPDLVPDPYYIQASTYVQRMSmynlRcAAEEncLASSaYRaD vrdyd LYOX_HUMAN : 207- 253: gygtg YfQYGLPDLVADPYYIQASTYVQKMSmynlRcAAEEncLASTaYRaD vrdyd LYOX_MOUSE : 201- 247: gygtg YfQYGLPDLVPDPYYIQASTYVQKMSmynlRcAAEEncLASSaYRaD vrdyd LYOX_RAT : 201- 247: gygtg YfQYGLPDLVPDPYYIQASTYVQKMSmynlRcAAEEncLASSaYRaD vrdyd M 13: 137.2604 5( 5) Y-G-L-P-D-L-V-[AP]-D-P-Y-Y-I-Q-A-S-T-Y-V-Q-[KR]-[FM]-[PS]-x(4)-[NR]-x-[AG]-[AT]-[ES]-[DE]-x(2)-[LP]-[AS]-[RS]-[PST]-x-[HY]-[RS]-x-D-x(2)-[DS]-[HY] Occurences: 5(5) LYOX_BOVIN : 12- 59: tgyfq YGLPDLVPDPYYIQASTYVQKFPqrxxNqGTSDflPSRPrHSmDefSH yvsvn LYOX_CHICK : 213- 260: tgyfq YGLPDLVPDPYYIQASTYVQRMSmynlRcAAEEncLASSaYRaDvrDY dnrvl LYOX_HUMAN : 210- 257: tgyfq YGLPDLVADPYYIQASTYVQKMSmynlRcAAEEncLASTaYRaDvrDY dhrvl LYOX_MOUSE : 204- 251: tgyfq YGLPDLVPDPYYIQASTYVQKMSmynlRcAAEEncLASSaYRaDvrDY dhrvl LYOX_RAT : 204- 251: tgyfq YGLPDLVPDPYYIQASTYVQKMSmynlRcAAEEncLASSaYRaDvrDY dhrvl N 14: 129.4178 5( 5) Q-x(1,2)-L-P-D-L-V-[AP]-D-P-Y-Y-I-Q-A-S-T-Y-V-Q-[KR]-[FM]-[PS]-x(4)-[NR]-x-[AG]-[AT]-[ES]-[DE]-x(2)-[LP]-[AS]-[RS]-[PST]-x-[HY]-[RS]-x-D-x(2)-[DS] Occurences: 5(5) LYOX_BOVIN : 11- 58: gtgyf QygLPDLVPDPYYIQASTYVQKFPqrxxNqGTSDflPSRPrHSmDefS hyvsv LYOX_CHICK : 212- 259: gtgyf QygLPDLVPDPYYIQASTYVQRMSmynlRcAAEEncLASSaYRaDvrD ydnrv LYOX_HUMAN : 209- 256: gtgyf QygLPDLVADPYYIQASTYVQKMSmynlRcAAEEncLASTaYRaDvrD ydhrv LYOX_MOUSE : 203- 250: gtgyf QygLPDLVPDPYYIQASTYVQKMSmynlRcAAEEncLASSaYRaDvrD ydhrv LYOX_RAT : 203- 250: gtgyf QygLPDLVPDPYYIQASTYVQKMSmynlRcAAEEncLASSaYRaDvrD ydhrv O 15: 126.7202 5( 5) F-x(3)-L-P-D-L-V-[AP]-D-P-Y-Y-I-Q-A-S-T-Y-V-Q-[KR]-[FM]-[PS]-x(4)-[NR]-x-[AG]-[AT]-[ES]-[DE]-x(2)-[LP]-[AS]-[RS]-[PST]-x-[HY]-[RS]-x-D Occurences: 5(5) LYOX_BOVIN : 10- 55: ygtgy FqygLPDLVPDPYYIQASTYVQKFPqrxxNqGTSDflPSRPrHSmD efshy LYOX_CHICK : 211- 256: ygtgy FqygLPDLVPDPYYIQASTYVQRMSmynlRcAAEEncLASSaYRaD vrdyd LYOX_HUMAN : 208- 253: ygtgy FqygLPDLVADPYYIQASTYVQKMSmynlRcAAEEncLASTaYRaD vrdyd LYOX_MOUSE : 202- 247: ygtgy FqygLPDLVPDPYYIQASTYVQKMSmynlRcAAEEncLASSaYRaD vrdyd LYOX_RAT : 202- 247: ygtgy FqygLPDLVPDPYYIQASTYVQKMSmynlRcAAEEncLASSaYRaD vrdyd P 16: 117.3536 5( 5) F-P-Q-R-x(2)-N-Q-G-T-S-D-F-L-P-S-R-P-R-[HY]-S-x(1,2)-E-x(1,2)-S-x-[HY]-x(4)-[PS]-x(3)-[FV]-[PS]-[EH]-x-D-x(2)-[DN]-[AN]-[NSV]-[STV] Occurences: 5(5) LYOX_BOVIN : 33- 79: tyvqk FPQRxxNQGTSDFLPSRPRHSmdEf-ShYvsvnPsylVPEsDysNNVV rytgh LYOX_CHICK : 268- 314: rvllr FPQRvkNQGTSDFLPSRPRYSw-EwhScHqhyhSmdeFSHyDllDASS hrkva LYOX_HUMAN : 265- 311: rvllr FPQRvkNQGTSDFLPSRPRYSw-EwhScHqhyhSmdeFSHyDllDANT qrrva LYOX_MOUSE : 259- 305: rvllr FPQRvkNQGTSDFLPSRPRYSw-EwhScHqhyhSmdeFSHyDllDANT qrrva LYOX_RAT : 259- 305: rvllr FPQRvkNQGTSDFLPSRPRYSw-EwhScHqhyhSmdeFSHyDllDAST qrrva Q 17: 113.1835 5( 5) P-Q-R-x(2)-N-Q-G-T-S-D-F-L-P-S-R-P-R-[HY]-S-x(1,2)-E-x(1,2)-S-x-[HY]-x(4)-[PS]-x(3)-[FV]-[PS]-[EH]-x-D-x(2)-[DN]-[AN]-[NSV]-[STV] Occurences: 5(5) LYOX_BOVIN : 34- 79: yvqkf PQRxxNQGTSDFLPSRPRHSmdEf-ShYvsvnPsylVPEsDysNNVV rytgh LYOX_CHICK : 269- 314: vllrf PQRvkNQGTSDFLPSRPRYSw-EwhScHqhyhSmdeFSHyDllDASS hrkva LYOX_HUMAN : 266- 311: vllrf PQRvkNQGTSDFLPSRPRYSw-EwhScHqhyhSmdeFSHyDllDANT qrrva LYOX_MOUSE : 260- 305: vllrf PQRvkNQGTSDFLPSRPRYSw-EwhScHqhyhSmdeFSHyDllDANT qrrva LYOX_RAT : 260- 305: vllrf PQRvkNQGTSDFLPSRPRYSw-EwhScHqhyhSmdeFSHyDllDAST qrrva R 18: 112.2011 5( 5) Q-R-x(2)-N-Q-G-T-S-D-F-L-P-S-R-P-R-[HY]-S-x(1,2)-E-x(1,2)-S-x-[HY]-x(4)-[PS]-x(3)-[FV]-[PS]-[EH]-x-D-x(2)-[DN]-[AN]-[NSV]-[STV]-x(3)-[GV] Occurences: 5(5) LYOX_BOVIN : 35- 83: vqkfp QRxxNQGTSDFLPSRPRHSmdEf-ShYvsvnPsylVPEsDysNNVVrytG hhaya LYOX_CHICK : 270- 318: llrfp QRvkNQGTSDFLPSRPRYSw-EwhScHqhyhSmdeFSHyDllDASShrkV aeghk LYOX_HUMAN : 267- 315: llrfp QRvkNQGTSDFLPSRPRYSw-EwhScHqhyhSmdeFSHyDllDANTqrrV aeghk LYOX_MOUSE : 261- 309: llrfp QRvkNQGTSDFLPSRPRYSw-EwhScHqhyhSmdeFSHyDllDANTqrrV aeghk LYOX_RAT : 261- 309: llrfp QRvkNQGTSDFLPSRPRYSw-EwhScHqhyhSmdeFSHyDllDASTqrrV aeghk S 19: 105.4020 5( 5) V-S-V-N-P-S-Y-L-V-P-E-S-D-Y-[ST]-N-N-x(0,1)-V-x(0,1)-R-x-[DET]-[GI]-[HR]-[HY]-[AT]-x(3)-[AG]-x-[AS]-x-[GS]-[CP] Occurences: 5(5) LYOX_BOVIN : 61- 95: efshy VSVNPSYLVPESDYSNNvV-RyTGHHAyasGqSiSP y LYOX_BOVIN : 61- 95: efshy VSVNPSYLVPESDYSNN-VvRyTGHHAyasGqSiSP y LYOX_CHICK : 381- 415: nyilk VSVNPSYLVPESDYSNNiV-RcDIRYTghhAyAsGC tispy LYOX_HUMAN : 378- 412: nyilk VSVNPSYLVPESDYTNNvV-RcDIRYTghhAyAsGC tispy LYOX_HUMAN : 378- 412: nyilk VSVNPSYLVPESDYTNN-VvRcDIRYTghhAyAsGC tispy LYOX_MOUSE : 372- 406: nyilk VSVNPSYLVPESDYTNNvV-RcDIRYTghhAyAsGC tispy LYOX_MOUSE : 372- 406: nyilk VSVNPSYLVPESDYTNN-VvRcDIRYTghhAyAsGC tispy LYOX_RAT : 372- 406: nyilk VSVNPSYLVPESDYSNNvV-RcEIRYTghhAyAsGC tispy LYOX_RAT : 372- 406: nyilk VSVNPSYLVPESDYSNN-VvRcEIRYTghhAyAsGC tispy T 20: 99.5970 5( 5) V-x(2,3)-F-P-Q-R-x(2)-N-Q-G-T-S-D-F-L-P-S-R-P-R-[HY]-S-x(1,2)-E-[FW]-x(4)-[QS]-x(3)-S-x(4)-[ES] Occurences: 5(5) LYOX_BOVIN : 30- 71: qasty Vqk-FPQRxxNQGTSDFLPSRPRHSmdEFshyvSvnpSylvpE sdysn LYOX_CHICK : 264- 305: dydnr VllrFPQRvkNQGTSDFLPSRPRYSw-EWhschQhyhSmdefS hydll LYOX_HUMAN : 261- 302: dydhr VllrFPQRvkNQGTSDFLPSRPRYSw-EWhschQhyhSmdefS hydll LYOX_MOUSE : 255- 296: dydhr VllrFPQRvkNQGTSDFLPSRPRYSw-EWhschQhyhSmdefS hydll LYOX_RAT : 255- 296: dydhr VllrFPQRvkNQGTSDFLPSRPRYSw-EWhschQhyhSmdefS hydll Number of patterns evaluated by Pratt:33319 Total running time: 5 seconds