------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 13 sequences from file LY6_UPAR PATTERN CONSERVATION: CM: min Nr of Seqs to Match 13 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename LY6_UPAR.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CD59_CALSQ 128 CD59_HSVSA 121 CD59_HUMAN 128 CD59_RAT 15 LY6A_MOUSE 134 LY6C_MOUSE 131 LY6F_MOUSE 134 LY6G_MOUSE 111 THYB_MOUSE 127 UPAR_BOVIN 330 UPAR_HUMAN 335 UPAR_MOUSE 327 UPAS_MOUSE 222 Pratt run started at Thu Feb 6 20:12:05 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 12.5102 18( 13) L-x-C-x(2)-C 2: 10.5102 17( 13) C-x(0,2)-P-x(3,5)-C 3: 8.3401 24( 13) S-x(2)-T 4: 8.3401 23( 13) L-x(2)-V 5: 8.3401 19( 13) C-L 6: 8.3401 20( 13) C-x(2)-C 7: 8.3401 22( 13) C-x(3)-L 8: 7.8401 27( 13) S-x(1,2)-C 9: 7.8401 29( 13) V-x(2,3)-C 10: 7.8401 27( 13) Y-x(1,2)-C 11: 7.8401 36( 13) C-x(0,1)-N 12: 7.3401 22( 13) K-x(0,2)-T 13: 7.3401 48( 13) C-x(1,3)-T 14: 7.3401 55( 13) S-x(0,2)-C 15: 7.3401 24( 13) S-x(1,3)-K 16: 7.3401 30( 13) P-x(3,5)-C 17: 7.3401 28( 13) N-x(1,3)-L 18: 7.3401 35( 13) N-x(0,2)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 16.7501 15( 13) C-x(2)-[CDN]-L-[CD]-[NPS] B 2: 15.1042 18( 13) L-[EQR]-C-x(2)-C C 3: 12.1451 14( 13) C-x(0,2)-P-x(3,5)-C-x-[ADENST] D 4: 9.9593 22( 13) S-x(0,2)-C-x-[NST] E 5: 8.3401 24( 13) S-x(2)-T F 6: 8.3401 23( 13) L-x(2)-V G 7: 8.3401 19( 13) C-L H 8: 8.3401 20( 13) C-x(2)-C I 9: 7.8401 27( 13) S-x(1,2)-C J 10: 7.8401 29( 13) V-x(2,3)-C K 11: 7.8401 27( 13) Y-x(1,2)-C L 12: 7.8401 36( 13) C-x(0,1)-N M 13: 7.3401 22( 13) K-x(0,2)-T N 14: 7.3401 48( 13) C-x(1,3)-T O 15: 7.3401 24( 13) S-x(1,3)-K P 16: 7.3401 30( 13) P-x(3,5)-C Q 17: 7.3401 28( 13) N-x(1,3)-L R 18: 7.3401 35( 13) N-x(0,2)-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 16.7501 15( 13) C-x(2)-[CDN]-L-[CD]-[NPS] Occurences: 15(13) CD59_CALSQ : 44- 50: ttttn CtsNLDS cliak CD59_CALSQ : 89- 95: lkyhc CreNLCN fngil CD59_HSVSA : 38- 44: ttsts CtsNLDS cliak CD59_HSVSA : 83- 89: lkyhc CkkNLCN vnkgi CD59_HUMAN : 89- 95: ltyyc CkkDLCN fneql CD59_RAT : 3- 9: lr CynCLDP vssck LY6A_MOUSE : 99- 105: vktsc CqeDLCN vavpn LY6C_MOUSE : 96- 102: ertsc CseDLCN aavpt LY6F_MOUSE : 99- 105: vntsc CkeDLCN apfst LY6G_MOUSE : 76- 82: vktyc CkeDLCN aavpt THYB_MOUSE : 87- 93: evtqc CqtDLCN erlvs UPAR_BOVIN : 91- 97: lsetv CrsDLCN kpnpg UPAR_HUMAN : 93- 99: ltevv CglDLCN qgnsg UPAR_MOUSE : 94- 100: ltetv CatNLCN rprpg UPAS_MOUSE : 94- 100: ltetv CatNLCN rprpg B 2: 15.1042 18( 13) L-[EQR]-C-x(2)-C Occurences: 18(13) CD59_CALSQ : 26- 31: hsghs LQCysC pysta CD59_HSVSA : 20- 25: kpihs LQCynC shstm CD59_HUMAN : 26- 31: hsghs LQCynC pnpta CD59_RAT : 1- 6: LRCynC ldpvs LY6A_MOUSE : 27- 32: eraqg LECyqC ygvpf LY6C_MOUSE : 27- 32: graqg LQCyeC ygvpi LY6F_MOUSE : 27- 32: eraqg LECynC lgvsl LY6G_MOUSE : 4- 9: aqg LECynC igvpp THYB_MOUSE : 21- 26: spawa LRChvC tnsan UPAR_BOVIN : 21- 26: pgswg LRClqC entts UPAR_BOVIN : 113- 118: srnry LECasC sstdl UPAR_BOVIN : 209- 214: lppng LQCysC egnga UPAR_HUMAN : 23- 28: paswg LRCmqC ktngd UPAR_HUMAN : 115- 120: srsry LECisC gssdm UPAR_MOUSE : 24- 29: pasqg LQCmqC esnqs UPAR_MOUSE : 117- 122: pqgry LECasC tsldq UPAS_MOUSE : 24- 29: pasqg LQCmqC esnqs UPAS_MOUSE : 117- 122: pqgry LECasC tsldq C 3: 12.1451 14( 13) C-x(0,2)-P-x(3,5)-C-x-[ADENST] Occurences: 14(13) CD59_CALSQ : 31- 40: lqcys C--PystarCtT ttnct CD59_HSVSA : 14- 24: ltfvf Ck-PihslqCyN cshst CD59_HUMAN : 31- 40: lqcyn CpnPtad--CkT avncs CD59_HUMAN : 31- 40: lqcyn C--PnptadCkT avncs CD59_RAT : 6- 15: lrcyn CldPvss--CkT LY6A_MOUSE : 46- 55: cpsit CpyPdgv--CvT qeaav LY6A_MOUSE : 46- 55: cpsit C--PypdgvCvT qeaav LY6C_MOUSE : 41- 48: piets C--Pavt--CrA sdgfc LY6F_MOUSE : 46- 55: cksit CpyPdav--CiS qqvel LY6F_MOUSE : 46- 55: cksit C--PypdavCiS qqvel LY6G_MOUSE : 23- 32: cnttt C--PfsdgfCvA leiev THYB_MOUSE : 38- 47: knpqv C--PsnfyfCkT vtsve UPAR_BOVIN : 37- 46: csvee Ct-Pgqdl-CrT tvlsv UPAR_BOVIN : 232- 241: tflid CrgPmnq--ClE atgtk UPAR_HUMAN : 137- 146: hqslq CrsPeeq--ClD vvthw UPAR_MOUSE : 139- 148: eqslq CryPteh--CiE vvtlq UPAS_MOUSE : 139- 148: eqslq CryPteh--CiE vvtlq D 4: 9.9593 22( 13) S-x(0,2)-C-x-[NST] Occurences: 22(13) CD59_CALSQ : 25- 30: chsgh SlqCyS cpyst CD59_HSVSA : 19- 24: ckpih SlqCyN cshst CD59_HSVSA : 35- 40: mqctt StsCtS nldsc CD59_HSVSA : 37- 40: cttst S--CtS nldsc CD59_HUMAN : 25- 30: chsgh SlqCyN cpnpt CD59_RAT : 11- 15: cldpv Ss-CkT CD59_RAT : 12- 15: ldpvs S--CkT LY6A_MOUSE : 40- 43: vpfet S--CpS itcpy LY6C_MOUSE : 94- 97: irert S--CcS edlcn LY6F_MOUSE : 3- 6: md S--ChT tkscv LY6G_MOUSE : 17- 20: vppet S--CnT ttcpf THYB_MOUSE : 29- 34: hvctn SanCkN pqvcp THYB_MOUSE : 66- 69: kecan S--CtS dysqq UPAR_BOVIN : 117- 120: yleca S--CsS tdlsc UPAR_BOVIN : 262- 266: gcaap Sw-CqS lhvae UPAR_BOVIN : 281- 284: thvnv S--CcT gsgcn UPAR_HUMAN : 119- 122: yleci S--CgS sdmsc UPAR_HUMAN : 134- 139: rgrhq SlqCrS peeqc UPAR_HUMAN : 286- 289: nhidv S--CcT ksgcn UPAR_MOUSE : 121- 124: yleca S--CtS ldqsc UPAR_MOUSE : 291- 295: scchg Sg-CnS ptgga UPAS_MOUSE : 121- 124: yleca S--CtS ldqsc E 5: 8.3401 24( 13) S-x(2)-T Occurences: 24(13) CD59_CALSQ : 108- 111: ggttl SkkT vlllv CD59_HSVSA : 26- 29: qcync ShsT mqctt CD59_HUMAN : 108- 111: ggtsl SekT vlllv CD59_RAT : 12- 15: ldpvs SckT LY6A_MOUSE : 4- 7: mdt ShtT kscll LY6A_MOUSE : 113- 116: vpngg StwT magvl LY6C_MOUSE : 110- 113: vptag StwT magvl LY6F_MOUSE : 3- 6: md SchT tkscv LY6F_MOUSE : 113- 116: fstgg StwT mtrvl LY6G_MOUSE : 17- 20: vppet ScnT ttcpf LY6G_MOUSE : 90- 93: vptgg SswT magvl THYB_MOUSE : 81- 84: hvssg SevT qccqt THYB_MOUSE : 107- 110: ghall SsvT lglat THYB_MOUSE : 118- 121: latsl SllT vmalc UPAR_BOVIN : 224- 227: ahrcs SeeT flidc UPAR_BOVIN : 281- 284: thvnv SccT gsgcn UPAR_HUMAN : 70- 73: kscth SekT nrtls UPAR_HUMAN : 78- 81: tnrtl SyrT glkit UPAR_HUMAN : 229- 232: thgcs SeeT flidc UPAR_HUMAN : 286- 289: nhidv SccT ksgcn UPAR_MOUSE : 71- 74: rgcah SekT nrtms UPAR_MOUSE : 182- 185: tagfh SnqT fhflk UPAR_MOUSE : 276- 279: shvad SfpT hlnvs UPAS_MOUSE : 71- 74: rgcah SekT nrtms F 6: 8.3401 23( 13) L-x(2)-V Occurences: 23(13) CD59_CALSQ : 113- 116: skktv LllV tpfla CD59_HSVSA : 9- 12: lftlv LtfV fckpi CD59_HSVSA : 87- 90: cckkn LcnV nkgie CD59_HSVSA : 111- 114: lllla LflV tawnf CD59_HUMAN : 12- 15: svlfg LllV lavfc CD59_HUMAN : 113- 116: sektv LllV tpfla CD59_RAT : 7- 10: rcync LdpV ssckt LY6A_MOUSE : 103- 106: ccqed LcnV avpng LY6A_MOUSE : 125- 128: vllfs LssV llqtl LY6C_MOUSE : 122- 125: vllfs LssV ilqtl LY6F_MOUSE : 14- 17: scvli LlvV llcae LY6F_MOUSE : 125- 128: vllln LgsV flqtl LY6G_MOUSE : 102- 105: vllfs LvsV llqtf THYB_MOUSE : 106- 109: pghal LssV tlgla THYB_MOUSE : 119- 122: atsls LltV malcl UPAR_BOVIN : 8- 11: qplll LllV ytyip UPAR_BOVIN : 275- 278: aeafd LthV nvscc UPAR_HUMAN : 60- 63: eegee LelV eksct UPAR_HUMAN : 88- 91: lkits LteV vcgld UPAR_HUMAN : 145- 148: peeqc LdvV thwiq UPAR_MOUSE : 61- 64: qddre LevV trgca UPAR_MOUSE : 320- 323: lltlg LwgV llwt UPAS_MOUSE : 61- 64: qddre LevV trgca G 7: 8.3401 19( 13) C-L Occurences: 19(13) CD59_CALSQ : 51- 52: snlds CL iakag CD59_HSVSA : 45- 46: snlds CL iakag CD59_HUMAN : 51- 52: sdfda CL itkag CD59_RAT : 6- 7: lrcyn CL dpvss LY6A_MOUSE : 10- 11: httks CL lillv LY6A_MOUSE : 74- 75: vknnl CL picpp LY6C_MOUSE : 10- 11: hatks CL lillv LY6C_MOUSE : 74- 75: lktrq CL sfcpa LY6F_MOUSE : 32- 33: lecyn CL gvslg LY6G_MOUSE : 51- 52: vksnl CL picpt THYB_MOUSE : 126- 127: tvmal CL UPAR_BOVIN : 23- 24: swglr CL qcent UPAR_BOVIN : 135- 136: dqtmq CL ksrdq UPAR_BOVIN : 239- 240: gpmnq CL eatgt UPAR_HUMAN : 144- 145: speeq CL dvvth UPAR_HUMAN : 244- 245: gpmnq CL vatgt UPAR_MOUSE : 35- 36: esnqs CL veeca UPAR_MOUSE : 243- 244: gpmnq CL vatgl UPAS_MOUSE : 35- 36: esnqs CL veeca H 8: 8.3401 20( 13) C-x(2)-C Occurences: 20(13) CD59_CALSQ : 28- 31: ghslq CysC pysta CD59_HSVSA : 22- 25: ihslq CynC shstm CD59_HUMAN : 28- 31: ghslq CynC pnpta CD59_RAT : 3- 6: lr CynC ldpvs LY6A_MOUSE : 29- 32: aqgle CyqC ygvpf LY6C_MOUSE : 29- 32: aqglq CyeC ygvpi LY6F_MOUSE : 29- 32: aqgle CynC lgvsl LY6G_MOUSE : 6- 9: aqgle CynC igvpp THYB_MOUSE : 23- 26: awalr ChvC tnsan UPAR_BOVIN : 23- 26: swglr ClqC entts UPAR_BOVIN : 115- 118: nryle CasC sstdl UPAR_BOVIN : 211- 214: pnglq CysC egnga UPAR_HUMAN : 25- 28: swglr CmqC ktngd UPAR_HUMAN : 117- 120: sryle CisC gssdm UPAR_HUMAN : 216- 219: qngrq CysC kgnst UPAR_MOUSE : 26- 29: sqglq CmqC esnqs UPAR_MOUSE : 119- 122: gryle CasC tsldq UPAR_MOUSE : 215- 218: pngfq CysC egnnt UPAS_MOUSE : 26- 29: sqglq CmqC esnqs UPAS_MOUSE : 119- 122: gryle CasC tsldq I 9: 7.8401 27( 13) S-x(1,2)-C Occurences: 27(13) CD59_CALSQ : 25- 28: chsgh SlqC yscpy CD59_HSVSA : 19- 22: ckpih SlqC yncsh CD59_HSVSA : 35- 38: mqctt StsC tsnld CD59_HUMAN : 25- 28: chsgh SlqC yncpn CD59_RAT : 11- 13: cldpv Ss-C kt LY6A_MOUSE : 43- 46: etscp SitC pypdg LY6A_MOUSE : 97- 99: vnvkt Sc-C qedlc LY6C_MOUSE : 76- 78: trqcl Sf-C pagvp LY6C_MOUSE : 94- 96: irert Sc-C sedlc LY6F_MOUSE : 43- 46: giack SitC pypda LY6F_MOUSE : 97- 99: vnvnt Sc-C kedlc LY6G_MOUSE : 48- 51: rskvk SnlC lpicp THYB_MOUSE : 29- 32: hvctn SanC knpqv UPAR_BOVIN : 93- 96: etvcr SdlC nkpnp UPAR_BOVIN : 262- 264: gcaap Sw-C qslhv UPAR_BOVIN : 281- 283: thvnv Sc-C tgsgc UPAR_BOVIN : 286- 288: scctg Sg-C nhpar UPAR_HUMAN : 134- 137: rgrhq SlqC rspee UPAR_HUMAN : 267- 269: gcata Sm-C qhahl UPAR_HUMAN : 286- 288: nhidv Sc-C tksgc UPAR_HUMAN : 291- 293: scctk Sg-C nhpdl UPAR_MOUSE : 136- 139: rgreq SlqC rypte UPAR_MOUSE : 266- 268: gcata Sw-C qgshv UPAR_MOUSE : 284- 287: thlnv SvsC chgsg UPAR_MOUSE : 286- 288: lnvsv Sc-C hgsgc UPAR_MOUSE : 291- 293: scchg Sg-C nsptg UPAS_MOUSE : 136- 139: rgreq SlqC rypte J 10: 7.8401 29( 13) V-x(2,3)-C Occurences: 29(13) CD59_CALSQ : 60- 64: kaglr VyyrC wkfed CD59_HSVSA : 54- 58: kagsg VyyrC wkfdd CD59_HUMAN : 60- 64: kaglq VynkC wkfeh CD59_RAT : 10- 13: ncldp Vss-C kt LY6A_MOUSE : 16- 20: llill VallC aeraq LY6A_MOUSE : 94- 98: gtkvn VktsC cqedl LY6C_MOUSE : 16- 20: llill VallC agraq LY6F_MOUSE : 16- 20: vlill VvllC aeraq LY6F_MOUSE : 17- 20: lillv Vll-C aeraq LY6F_MOUSE : 94- 98: gttvn VntsC ckedl LY6G_MOUSE : 71- 75: gnavn VktyC ckedl THYB_MOUSE : 59- 63: lngnl VrkeC ansct THYB_MOUSE : 83- 86: ssgse Vtq-C cqtdl THYB_MOUSE : 83- 87: ssgse VtqcC qtdlc THYB_MOUSE : 122- 126: lsllt VmalC l UPAR_BOVIN : 34- 37: ttscs Vee-C tpgqd UPAR_BOVIN : 61- 65: nemnv VrkgC thpdk UPAR_BOVIN : 278- 282: fdlth VnvsC ctgsg UPAR_BOVIN : 280- 283: lthvn Vsc-C tgsgc UPAR_HUMAN : 36- 39: ngdcr Vee-C algqd UPAR_HUMAN : 63- 67: eelel VeksC thsek UPAR_HUMAN : 260- 263: nqsym Vrg-C atasm UPAR_HUMAN : 285- 288: mnhid Vsc-C tksgc UPAR_MOUSE : 37- 40: nqscl Vee-C algqd UPAR_MOUSE : 64- 68: relev VtrgC ahsek UPAR_MOUSE : 259- 262: nrsyt Vrg-C atasw UPAR_MOUSE : 283- 287: pthln VsvsC chgsg UPAR_MOUSE : 285- 288: hlnvs Vsc-C hgsgc UPAS_MOUSE : 37- 40: nqscl Vee-C algqd UPAS_MOUSE : 64- 68: relev VtrgC ahsek K 11: 7.8401 27( 13) Y-x(1,2)-C Occurences: 27(13) CD59_CALSQ : 29- 31: hslqc Ys-C pysta CD59_CALSQ : 61- 64: aglrv YyrC wkfed CD59_CALSQ : 62- 64: glrvy Yr-C wkfed CD59_CALSQ : 86- 88: enelk Yh-C crenl CD59_CALSQ : 86- 89: enelk YhcC renlc CD59_HSVSA : 23- 25: hslqc Yn-C shstm CD59_HSVSA : 55- 58: agsgv YyrC wkfdd CD59_HSVSA : 56- 58: gsgvy Yr-C wkfdd CD59_HSVSA : 80- 82: etqlk Yh-C ckknl CD59_HSVSA : 80- 83: etqlk YhcC kknlc CD59_HUMAN : 29- 31: hslqc Yn-C pnpta CD59_HUMAN : 61- 64: aglqv YnkC wkfeh CD59_HUMAN : 86- 88: enelt Yy-C ckkdl CD59_HUMAN : 86- 89: enelt YycC kkdlc CD59_HUMAN : 87- 89: nelty Yc-C kkdlc CD59_RAT : 4- 6: lrc Yn-C ldpvs LY6A_MOUSE : 30- 32: qglec Yq-C ygvpf LY6C_MOUSE : 30- 32: qglqc Ye-C ygvpi LY6F_MOUSE : 30- 32: qglec Yn-C lgvsl LY6G_MOUSE : 7- 9: qglec Yn-C igvpp LY6G_MOUSE : 74- 76: vnvkt Yc-C kedlc THYB_MOUSE : 43- 45: cpsnf Yf-C ktvts UPAR_BOVIN : 112- 115: vsrnr YleC ascss UPAR_BOVIN : 212- 214: nglqc Ys-C egnga UPAR_HUMAN : 114- 117: ysrsr YleC iscgs UPAR_HUMAN : 217- 219: ngrqc Ys-C kgnst UPAR_MOUSE : 116- 119: fpqgr YleC ascts UPAR_MOUSE : 194- 197: lkccn YthC nggpv UPAR_MOUSE : 216- 218: ngfqc Ys-C egnnt UPAS_MOUSE : 116- 119: fpqgr YleC ascts L 12: 7.8401 36( 13) C-x(0,1)-N Occurences: 36(13) CD59_CALSQ : 94- 95: crenl C-N fngil CD59_HSVSA : 22- 24: ihslq CyN cshst CD59_HSVSA : 88- 89: ckknl C-N vnkgi CD59_HUMAN : 28- 30: ghslq CyN cpnpt CD59_HUMAN : 31- 33: lqcyn CpN ptadc CD59_HUMAN : 70- 71: wkfeh C-N fndvt CD59_HUMAN : 94- 95: ckkdl C-N fneql CD59_RAT : 3- 5: lr CyN cldpv LY6A_MOUSE : 104- 105: cqedl C-N vavpn LY6C_MOUSE : 101- 102: csedl C-N aavpt LY6F_MOUSE : 29- 31: aqgle CyN clgvs LY6F_MOUSE : 104- 105: ckedl C-N apfst LY6G_MOUSE : 6- 8: aqgle CyN cigvp LY6G_MOUSE : 18- 19: ppets C-N tttcp LY6G_MOUSE : 81- 82: ckedl C-N aavpt THYB_MOUSE : 26- 28: lrchv CtN sanck THYB_MOUSE : 32- 34: tnsan CkN pqvcp THYB_MOUSE : 63- 65: lvrke CaN sctsd THYB_MOUSE : 92- 93: cqtdl C-N erlvs UPAR_BOVIN : 26- 28: lrclq CeN ttscs UPAR_BOVIN : 96- 97: crsdl C-N kpnpg UPAR_BOVIN : 187- 189: fhflr CcN ttkcn UPAR_BOVIN : 188- 189: hflrc C-N ttkcn UPAR_BOVIN : 193- 194: cnttk C-N agsvl UPAR_BOVIN : 288- 289: ctgsg C-N hpard UPAR_HUMAN : 98- 99: cgldl C-N qgnsg UPAR_HUMAN : 192- 194: fhflk CcN ttkcn UPAR_HUMAN : 193- 194: hflkc C-N ttkcn UPAR_HUMAN : 198- 199: cnttk C-N egpil UPAR_HUMAN : 293- 294: ctksg C-N hpdld UPAR_MOUSE : 99- 100: catnl C-N rprpg UPAR_MOUSE : 191- 193: fhflk CcN ythcn UPAR_MOUSE : 192- 193: hflkc C-N ythcn UPAR_MOUSE : 197- 198: cnyth C-N ggpvl UPAR_MOUSE : 293- 294: chgsg C-N sptgg UPAS_MOUSE : 99- 100: catnl C-N rprpg M 13: 7.3401 22( 13) K-x(0,2)-T Occurences: 22(13) CD59_CALSQ : 109- 111: gttls Kk-T vlllv CD59_CALSQ : 110- 111: ttlsk K--T vlllv CD59_HSVSA : 98- 100: gieni Kr-T isdka CD59_HUMAN : 39- 40: ptadc K--T avncs CD59_HUMAN : 110- 111: tslse K--T vlllv CD59_RAT : 14- 15: pvssc K--T LY6A_MOUSE : 95- 96: tkvnv K--T sccqe LY6C_MOUSE : 68- 71: dsqrr KlkT rqcls LY6C_MOUSE : 70- 71: qrrkl K--T rqcls LY6F_MOUSE : 42- 45: lgiac KsiT cpypd LY6G_MOUSE : 72- 73: navnv K--T yccke THYB_MOUSE : 2- 3: m K--T allvl THYB_MOUSE : 46- 47: nfyfc K--T vtsve THYB_MOUSE : 46- 49: nfyfc KtvT svepl UPAR_BOVIN : 63- 66: mnvvr KgcT hpdkt UPAR_BOVIN : 70- 71: cthpd K--T nrsms UPAR_BOVIN : 304- 305: kggap K--T spahl UPAR_HUMAN : 29- 30: rcmqc K--T ngdcr UPAR_HUMAN : 65- 68: lelve KscT hsekt UPAR_HUMAN : 72- 73: cthse K--T nrtls UPAR_HUMAN : 84- 86: yrtgl Ki-T sltev UPAR_MOUSE : 73- 74: cahse K--T nrtms UPAS_MOUSE : 73- 74: cahse K--T nrtms N 14: 7.3401 48( 13) C-x(1,3)-T Occurences: 48(13) CD59_CALSQ : 31- 35: lqcys CpysT arctt CD59_CALSQ : 38- 40: ystar Ct--T ttnct CD59_CALSQ : 38- 41: ystar Ctt-T tncts CD59_CALSQ : 38- 42: ystar CtttT nctsn CD59_HSVSA : 25- 29: lqcyn CshsT mqctt CD59_HSVSA : 32- 34: hstmq Ct--T stsct CD59_HSVSA : 32- 36: hstmq CttsT sctsn CD59_HUMAN : 31- 35: lqcyn CpnpT adckt CD59_HUMAN : 38- 40: nptad Ck--T avncs CD59_HUMAN : 51- 54: sdfda Cli-T kaglq CD59_RAT : 13- 15: dpvss Ck--T LY6A_MOUSE : 41- 45: pfets CpsiT cpypd LY6A_MOUSE : 53- 55: ypdgv Cv--T qeaav LY6C_MOUSE : 41- 45: piets CpavT crasd LY6F_MOUSE : 4- 6: mds Ch--T tkscv LY6F_MOUSE : 4- 7: mds Cht-T kscvl LY6F_MOUSE : 41- 45: slgia CksiT cpypd LY6G_MOUSE : 18- 20: ppets Cn--T ttcpf LY6G_MOUSE : 18- 21: ppets Cnt-T tcpfs LY6G_MOUSE : 18- 22: ppets CnttT cpfsd LY6G_MOUSE : 55- 57: lclpi Cp--T tldnt LY6G_MOUSE : 55- 58: lclpi Cpt-T ldnte THYB_MOUSE : 23- 27: awalr ChvcT nsanc THYB_MOUSE : 45- 47: snfyf Ck--T vtsve THYB_MOUSE : 45- 49: snfyf CktvT svepl THYB_MOUSE : 86- 89: sevtq Ccq-T dlcne THYB_MOUSE : 87- 89: evtqc Cq--T dlcne UPAR_BOVIN : 26- 29: lrclq Cen-T tscsv UPAR_BOVIN : 26- 30: lrclq CentT scsve UPAR_BOVIN : 44- 46: pgqdl Cr--T tvlsv UPAR_BOVIN : 44- 47: pgqdl Crt-T vlsvw UPAR_BOVIN : 118- 121: lecas Css-T dlsce UPAR_BOVIN : 170- 174: gilpg CpgpT gfhnn UPAR_BOVIN : 187- 190: fhflr Ccn-T tkcna UPAR_BOVIN : 187- 191: fhflr CcntT kcnag UPAR_BOVIN : 188- 190: hflrc Cn--T tkcna UPAR_BOVIN : 188- 191: hflrc Cnt-T kcnag UPAR_BOVIN : 239- 243: gpmnq CleaT gtkgl UPAR_BOVIN : 282- 284: hvnvs Cc--T gsgcn UPAR_HUMAN : 28- 30: lrcmq Ck--T ngdcr UPAR_HUMAN : 46- 48: lgqdl Cr--T tivrl UPAR_HUMAN : 46- 49: lgqdl Crt-T ivrlw UPAR_HUMAN : 192- 195: fhflk Ccn-T tkcne UPAR_HUMAN : 192- 196: fhflk CcntT kcneg UPAR_HUMAN : 193- 195: hflkc Cn--T tkcne UPAR_HUMAN : 193- 196: hflkc Cnt-T kcneg UPAR_HUMAN : 244- 248: gpmnq ClvaT gthep UPAR_HUMAN : 263- 265: ymvrg Ca--T asmcq UPAR_HUMAN : 287- 289: hidvs Cc--T ksgcn UPAR_MOUSE : 47- 49: lgqdl Cr--T tvlre UPAR_MOUSE : 47- 50: lgqdl Crt-T vlrew UPAR_MOUSE : 94- 96: ltetv Ca--T nlcnr UPAR_MOUSE : 119- 123: gryle CascT sldqs UPAR_MOUSE : 139- 143: eqslq CrypT ehcie UPAR_MOUSE : 174- 177: gslpg Cpg-T agfhs UPAR_MOUSE : 191- 195: fhflk CcnyT hcngg UPAR_MOUSE : 192- 195: hflkc Cny-T hcngg UPAR_MOUSE : 243- 247: gpmnq ClvaT gldvl UPAR_MOUSE : 262- 264: ytvrg Ca--T aswcq UPAR_MOUSE : 293- 297: chgsg CnspT ggapr UPAS_MOUSE : 47- 49: lgqdl Cr--T tvlre UPAS_MOUSE : 47- 50: lgqdl Crt-T vlrew UPAS_MOUSE : 94- 96: ltetv Ca--T nlcnr UPAS_MOUSE : 119- 123: gryle CascT sldqs UPAS_MOUSE : 139- 143: eqslq CrypT ehcie O 15: 7.3401 24( 13) S-x(1,3)-K Occurences: 24(13) CD59_CALSQ : 108- 110: ggttl Sk--K tvlll CD59_HSVSA : 65- 67: kfddc Sf--K risnq CD59_HSVSA : 102- 104: ikrti Sd--K allll CD59_HUMAN : 106- 110: enggt SlseK tvlll CD59_HUMAN : 108- 110: ggtsl Se--K tvlll CD59_RAT : 11- 14: cldpv Ssc-K t CD59_RAT : 12- 14: ldpvs Sc--K t LY6A_MOUSE : 4- 8: mdt ShttK sclli LY6A_MOUSE : 64- 68: avivd SqtrK vknnl LY6C_MOUSE : 64- 68: elied SqrrK lktrq LY6F_MOUSE : 64- 68: elivd SqrrK vknkl LY6F_MOUSE : 97- 100: vnvnt Scc-K edlcn LY6G_MOUSE : 41- 45: evivd ShrsK vksnl LY6G_MOUSE : 44- 47: vdshr Skv-K snlcl THYB_MOUSE : 29- 33: hvctn SancK npqvc UPAR_BOVIN : 150- 152: vithr Sl--K enpgd UPAR_HUMAN : 70- 72: kscth Se--K tnrtl UPAR_HUMAN : 218- 220: grqcy Sc--K gnsth UPAR_HUMAN : 286- 290: nhidv ScctK sgcnh UPAR_MOUSE : 71- 73: rgcah Se--K tnrtm UPAR_MOUSE : 158- 160: qster Sl--K dedyt UPAS_MOUSE : 71- 73: rgcah Se--K tnrtm UPAS_MOUSE : 154- 158: vvtlq StesK lpsag UPAS_MOUSE : 176- 179: ksweq Sas-K rqlnp P 16: 7.3401 30( 13) P-x(3,5)-C Occurences: 30(13) CD59_CALSQ : 32- 38: qcysc PystarC ttttn CD59_HSVSA : 16- 22: fvfck PihslqC yncsh CD59_HUMAN : 32- 38: qcync PnptadC ktavn CD59_HUMAN : 34- 38: yncpn Ptad--C ktavn CD59_RAT : 9- 13: yncld Pvss--C kt LY6A_MOUSE : 36- 41: qcygv Pfets-C psitc LY6A_MOUSE : 42- 46: fetsc Psit--C pypdg LY6A_MOUSE : 47- 53: psitc PypdgvC vtqea LY6A_MOUSE : 49- 53: itcpy Pdgv--C vtqea LY6C_MOUSE : 36- 41: ecygv Piets-C pavtc LY6C_MOUSE : 42- 46: ietsc Pavt--C rasdg LY6F_MOUSE : 47- 53: ksitc PypdavC isqqv LY6F_MOUSE : 49- 53: itcpy Pdav--C isqqv LY6G_MOUSE : 13- 18: ncigv Ppets-C ntttc LY6G_MOUSE : 14- 18: cigvp Pets--C ntttc LY6G_MOUSE : 24- 30: ntttc PfsdgfC valei THYB_MOUSE : 17- 23: avats PawalrC hvctn THYB_MOUSE : 39- 45: npqvc PsnfyfC ktvts UPAR_BOVIN : 39- 44: veect Pgqdl-C rttvl UPAR_BOVIN : 205- 211: elqnl PpnglqC ysceg UPAR_BOVIN : 206- 211: lqnlp Pnglq-C ysceg UPAR_BOVIN : 235- 239: idcrg Pmnq--C leatg UPAR_HUMAN : 140- 144: lqcrs Peeq--C ldvvt UPAR_HUMAN : 210- 216: elenl PqngrqC ysckg UPAR_HUMAN : 240- 244: idcrg Pmnq--C lvatg UPAR_MOUSE : 142- 146: lqcry Pteh--C ievvt UPAR_MOUSE : 209- 215: dlqsf PpngfqC ysceg UPAR_MOUSE : 210- 215: lqsfp Pngfq-C ysceg UPAR_MOUSE : 239- 243: incrg Pmnq--C lvatg UPAS_MOUSE : 142- 146: lqcry Pteh--C ievvt Q 17: 7.3401 28( 13) N-x(1,3)-L Occurences: 28(13) CD59_CALSQ : 77- 79: frqls Nq--L senel CD59_CALSQ : 82- 84: nqlse Ne--L kyhcc CD59_CALSQ : 97- 100: nlcnf Ngi-L enggt CD59_HSVSA : 71- 73: fkris Nq--L setql CD59_HSVSA : 118- 121: lvtaw Nfp-L CD59_HUMAN : 82- 84: trlre Ne--L tyycc CD59_HUMAN : 97- 100: dlcnf Neq-L enggt CD59_RAT : 5- 7: lrcy Nc--L dpvss LY6A_MOUSE : 71- 73: trkvk Nn--L clpic LY6A_MOUSE : 71- 75: trkvk NnlcL picpp LY6A_MOUSE : 72- 75: rkvkn Nlc-L picpp LY6C_MOUSE : 57- 60: fciaq Nie-L iedsq LY6F_MOUSE : 31- 33: glecy Nc--L gvslg LY6F_MOUSE : 71- 73: rrkvk Nk--L cfpfc LY6F_MOUSE : 84- 88: panle NmeiL gttvn LY6G_MOUSE : 49- 52: skvks Nlc-L picpt THYB_MOUSE : 55- 58: svepl Ngn-L vrkec THYB_MOUSE : 93- 96: qtdlc Ner-L vsaap UPAR_BOVIN : 110- 113: atvsr Nry-L ecasc UPAR_BOVIN : 207- 209: qnlpp Ng--L qcysc UPAR_BOVIN : 237- 240: crgpm Nqc-L eatgt UPAR_HUMAN : 74- 77: hsekt Nrt-L syrtg UPAR_HUMAN : 242- 245: crgpm Nqc-L vatgt UPAR_HUMAN : 294- 298: tksgc NhpdL dvqyr UPAR_MOUSE : 32- 36: mqces NqscL veeca UPAR_MOUSE : 221- 224: ysceg Nnt-L gcsse UPAR_MOUSE : 222- 224: scegn Nt--L gcsse UPAR_MOUSE : 241- 244: crgpm Nqc-L vatgl UPAS_MOUSE : 32- 36: mqces NqscL veeca R 18: 7.3401 35( 13) N-x(0,2)-L Occurences: 35(13) CD59_CALSQ : 47- 48: tncts N--L dscli CD59_CALSQ : 77- 79: frqls Nq-L senel CD59_CALSQ : 82- 84: nqlse Ne-L kyhcc CD59_CALSQ : 92- 93: hccre N--L cnfng CD59_CALSQ : 97- 100: nlcnf NgiL enggt CD59_HSVSA : 41- 42: tscts N--L dscli CD59_HSVSA : 71- 73: fkris Nq-L setql CD59_HSVSA : 86- 87: hcckk N--L cnvnk CD59_HSVSA : 118- 121: lvtaw NfpL CD59_HUMAN : 82- 84: trlre Ne-L tyycc CD59_HUMAN : 97- 100: dlcnf NeqL enggt CD59_RAT : 5- 7: lrcy Nc-L dpvss LY6A_MOUSE : 71- 73: trkvk Nn-L clpic LY6A_MOUSE : 72- 73: rkvkn N--L clpic LY6A_MOUSE : 72- 75: rkvkn NlcL picpp LY6C_MOUSE : 57- 60: fciaq NieL iedsq LY6F_MOUSE : 31- 33: glecy Nc-L gvslg LY6F_MOUSE : 71- 73: rrkvk Nk-L cfpfc LY6F_MOUSE : 81- 82: pfcpa N--L enmei LY6F_MOUSE : 124- 125: rvlll N--L gsvfl LY6G_MOUSE : 49- 50: skvks N--L clpic LY6G_MOUSE : 49- 52: skvks NlcL picpt THYB_MOUSE : 55- 58: svepl NgnL vrkec THYB_MOUSE : 57- 58: eplng N--L vrkec THYB_MOUSE : 93- 96: qtdlc NerL vsaap UPAR_BOVIN : 110- 113: atvsr NryL ecasc UPAR_BOVIN : 203- 204: vlelq N--L ppngl UPAR_BOVIN : 207- 209: qnlpp Ng-L qcysc UPAR_BOVIN : 237- 240: crgpm NqcL eatgt UPAR_HUMAN : 74- 77: hsekt NrtL syrtg UPAR_HUMAN : 208- 209: ilele N--L pqngr UPAR_HUMAN : 242- 245: crgpm NqcL vatgt UPAR_MOUSE : 97- 98: tvcat N--L cnrpr UPAR_MOUSE : 221- 224: ysceg NntL gcsse UPAR_MOUSE : 222- 224: scegn Nt-L gcsse UPAR_MOUSE : 241- 244: crgpm NqcL vatgl UPAS_MOUSE : 97- 98: tvcat N--L cnrpr Number of patterns evaluated by Pratt:65 Total running time: 1 seconds