------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 12 sequences from file LON_SER PATTERN CONSERVATION: CM: min Nr of Seqs to Match 12 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename LON_SER.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: LON1_MYXXA 817 LON2_MYXXA 826 LONH_HAEIN 601 LONM_HUMAN 962 LONM_SCHPO 1067 LONM_YEAST 1133 LONN_HUMAN 937 LON_BACBR 779 LON_BACSU 774 LON_ECOLI 784 LON_ERWAM 784 LON_HAEIN 803 Pratt run started at Thu Feb 6 20:11:02 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 23.5203 12( 12) G-G-x(2)-D-x(1,3)-I-x-G-x(2,3)-T 2: 23.5203 12( 12) A-x-L-x(2)-L-x(2,4)-N-x(2,3)-F-x-D 3: 20.3503 12( 12) G-L-x(4,5)-G-G-x(5)-E 4: 20.3503 17( 12) V-x(1,2)-G-L-x(5)-G-G 5: 19.8503 12( 12) R-x(3)-R-x(3)-G-x(2,3)-D-x(1,2)-E 6: 19.8503 12( 12) S-A-x(0,1)-L-x(2,3)-L-x(3)-Q 7: 19.8503 15( 12) S-x(0,1)-A-x(0,1)-L-x(2)-L-x(3)-Q 8: 19.8503 12( 12) G-D-x(0,2)-S-A-x-L 9: 19.8503 12( 12) G-x(2,4)-D-G-x-S-A 10: 19.8503 15( 12) A-x-L-x(2,3)-L-D-x(2,3)-Q 11: 19.8503 12( 12) G-x(0,1)-P-x(3)-G-x(2)-S-x(2,3)-S 12: 19.8503 12( 12) Y-x(1,2)-L-x(2)-Q-x(3,4)-I-x(2)-E 13: 19.8503 12( 12) L-x(4)-L-x(0,2)-G-x(3)-E-x(4)-A 14: 19.8503 15( 12) L-x(3,4)-Q-x(3)-F-x(0,1)-D-x-Y 15: 19.8503 15( 12) A-x(0,1)-L-x(2,3)-L-x(3)-Q-x(3)-F 16: 19.8503 12( 12) G-x(4)-A-x(0,1)-L-x(2,3)-D-x(2)-Q 17: 19.3503 12( 12) G-x(2)-D-x(1,3)-I-x-G-x(2,3)-T 18: 19.3503 12( 12) G-x(2)-D-x(2)-E-x(0,2)-G-x(2,3)-T 19: 19.3503 12( 12) T-G-x(5)-G-x(0,2)-L-x(3,4)-G 20: 19.3503 12( 12) P-x(0,1)-S-A-x-L-x(0,2)-E Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 96.2707 12( 12) G-x(2,4)-D-G-[DP]-S-A-[GS]-x-[AT]-[IM]-x-[CT]-[ASV]-[FL]-x-S-x-[AL]-x(4)-[ILV]-x(4)-[AG]-[IM]-T-G-[ES]-[AILV]-[DST]-x(2)-G-x-[IV]-x(2)-[IV]-G-G-[ILV] B 2: 72.8053 12( 12) G-G-[LMV]-x-D-x(1,3)-I-[EKR]-G-x(2,3)-T-x(2)-[GQ]-x(2)-[GP]-[GL]-x(3)-Q-x-[LMV]-x(2)-[ACPTV]-x(4)-[PQ]-x-[FILM]-x-[IL]-[DS]-[DE]-x-[DV]-K-x-[AGS] C 3: 69.9681 12( 12) G-G-x(2)-D-x(1,3)-I-[EKR]-G-x(2,3)-T-x(2)-[GQ]-x(2)-[GP]-[GL]-x(3)-Q-x-[LMV]-x(2)-[ACPTV]-x(4)-[PQ]-x-[FILM]-x-[IL]-[DS]-[DE]-x-[DV]-K-x-[AGS] D 4: 68.6353 12( 12) G-[LMV]-x-D-x(1,3)-I-[EKR]-G-x(2,3)-T-x(2)-[GQ]-x(2)-[GP]-[GL]-x(3)-Q-x-[LMV]-x(2)-[ACPTV]-x(4)-[PQ]-x-[FILM]-x-[IL]-[DS]-[DE]-x-[DV]-K-x-[AGS] E 5: 65.9884 12( 12) G-[LMV]-x-D-x(2)-E-x(0,2)-G-x(2,3)-T-x(2)-[GQ]-x(2)-[GP]-[GL]-x(3)-Q-x-[LMV]-x(2)-[ACPTV]-x(4)-[PQ]-x-[FILM]-x-[IL]-[DS]-[DE]-x-[DV]-K-x-[AGS] F 6: 63.7183 15( 12) S-x(0,1)-A-x(0,1)-L-[AE]-x-L-[DP]-x-[ENP]-Q-x(3)-[FI]-x-[DG]-x(3)-[DEQ]-x-[DGPT]-x-[DV]-x-[ST]-x-[GV]-x-[FV]-x-[ACDT]-x(2)-[EN]-x(4)-[IP]-[ACGP] G 7: 60.4929 12( 12) S-A-x(0,1)-L-x(2,3)-L-[DP]-x-[ENP]-Q-x(3)-[FI]-x-[DG]-x(3)-[DEQ]-x-[DGPT]-x-[DV]-x-[ST]-x-[GV]-x-[FV]-x-[ACDT]-x(2)-[EN]-x(4)-[IP]-[ACGP] H 8: 55.1109 12( 12) P-x(0,1)-S-A-x-L-x(0,2)-E-x(3)-[GPS]-[EN]-x-[DN]-x(4)-[DS]-x(2)-[ILM]-x(4)-[DV]-x-[AST]-x-[AV]-x-[FL]-[IPV]-x-[PT]-[AQS] I 9: 54.1567 12( 12) G-x(0,1)-P-[PV]-[CG]-[FV]-G-[EK]-[PT]-S-x(2,3)-S-x-[AI]-x-[AQS]-x-[GN]-[DR]-x(2)-[FV]-x(2)-[ASV] J 10: 51.9516 12( 12) T-G-[ES]-[AILV]-[DST]-x(2)-G-x(0,2)-L-x(3,4)-G-[GIL]-x(2)-[DK]-x-[ILMV]-[AEGS]-[AG]-x(2)-[AGST]-[GI]-x(4)-[GILV]-x-[PT] K 11: 50.9759 12( 12) G-x(0,1)-P-x-[CG]-[FV]-G-[EK]-[PT]-S-x(2,3)-S-x-[AI]-x-[AQS]-x-[GN]-[DR]-x(2)-[FV]-x(2)-[ASV] L 12: 47.6532 12( 12) G-x(0,1)-P-x(2)-[FV]-G-[EK]-[PT]-S-x(2,3)-S-x-[AI]-x-[AQS]-x-[GN]-[DR]-x(2)-[FV]-x(2)-[ASV] M 13: 46.1703 15( 12) A-x(0,1)-L-x(2,3)-L-x(2)-[DEN]-Q-x(3)-F-x-[DS]-x(2)-[ILM]-[DEH]-x(3)-[DQ]-x(3)-[LV]-[LMV]-x-[GIV]-x-[TV] N 14: 45.9652 15( 12) L-x(3,4)-Q-[NT]-x(2)-F-x(0,1)-D-x-Y-x-[ADE]-x-[DPT]-x-[DK]-x(3)-[CV]-x-[FI]-[IPV]-[ACST]-x-[AS] O 15: 44.4417 12( 12) G-x(0,1)-P-x(3)-G-[EK]-[PT]-S-x(2,3)-S-x-[AI]-x-[AQS]-x-[GN]-[DR]-x(2)-[FV]-x(2)-[ASV] P 16: 43.0728 12( 12) L-x-[GV]-x-[IV]-L-x(0,2)-G-[GN]-x(2)-E-x(4)-A-[EHK]-x-[AEGS]-[EG]-x(4)-[FILV]-x-[DP] Q 17: 38.5128 12( 12) R-x(3)-R-x(3)-G-x(2,3)-D-x(1,2)-E-x-[KR]-[GS]-[FH]-x-[HKR]-x-[FY]-x-[GS] R 18: 33.9749 17( 12) V-x(1,2)-G-L-[AGV]-[HWY]-x(3)-G-G-x(2)-[ILM]-x(2)-[AE]-[ASTV] S 19: 32.0488 12( 12) G-[DE]-[AP]-x-[AS]-A-x(0,1)-L-x(2,3)-D-[PQS]-x-Q T 20: 27.5721 12( 12) Y-x(1,2)-L-x-[EQ]-Q-x(3,4)-I-x(2)-E-x-[DGV]-x(3)-[DEGNT] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 96.2707 12( 12) G-x(2,4)-D-G-[DP]-S-A-[GS]-x-[AT]-[IM]-x-[CT]-[ASV]-[FL]-x-S-x-[AL]-x(4)-[ILV]-x(4)-[AG]-[IM]-T-G-[ES]-[AILV]-[DST]-x(2)-G-x-[IV]-x(2)-[IV]-G-G-[ILV] Occurences: 12(12) LON1_MYXXA : 683- 731: vhlpe GaipkDGPSAGvTIcTALvSaLtrvlIrrdvAMTGEITlrGrVlpIGGL kektl LON2_MYXXA : 693- 741: lhfpa GsipkDGPSAGvTIlTALtSlLtgirVrhdtAMTGEATlrGlVlpVGGI kekvl LONH_HAEIN : 449- 495: feqsy Gei--DGDSASlAIfCVLvSaLadlpLpqhiAITGSIDqfGlVhsVGGV ndkie LONM_HUMAN : 850- 898: phvpe GatpkDGPSAGcAIvTALlSlAmgrpVrqnlAMTGEVSltGkIlpVGGI kekti LONM_SCHPO : 938- 986: mhcpe GsiskDGPSAGiTMaTSLlSlAldtpVpattAMTGELTltGkIlrIGGL rektv LONM_YEAST : 1007- 1055: lhcpe GatpkDGPSAGvTMaTSFlSlAlnksIdptvAMTGELTltGkVlrIGGL rekav LONN_HUMAN : 825- 873: lhvpe GatpkDGPSAGcTIvTALlSlAmgrpVrqnlAMTGEVSltGkIlpVGGI kekti LON_BACBR : 670- 718: ihvpe GaipkDGPSAGiTMaTALvSaLtgipVkkevGMTGEITlrGrVlpIGGL kekcm LON_BACSU : 669- 717: ihvpe GavpkDGPSAGiTMaTALvSaLtgraVsrevGMTGEITlrGrVlpIGGL kekal LON_ECOLI : 671- 719: vhvpe GatpkDGPSAGiAMcTALvScLtgnpVradvAMTGEITlrGqVlpIGGL kekll LON_ERWAM : 671- 719: vhvpe GatpkDGPSAGiAMcTALvScLtgnpVradvAMTGEITlrGqVlpIGGL kekll LON_HAEIN : 671- 719: ihvpd GatpkDGPSAGiAMcTALiScLtgnpVradvAMTGEISlrGkVlpIGGL kekll B 2: 72.8053 12( 12) G-G-[LMV]-x-D-x(1,3)-I-[EKR]-G-x(2,3)-T-x(2)-[GQ]-x(2)-[GP]-[GL]-x(3)-Q-x-[LMV]-x(2)-[ACPTV]-x(4)-[PQ]-x-[FILM]-x-[IL]-[DS]-[DE]-x-[DV]-K-x-[AGS] Occurences: 12(12) LON1_MYXXA : 395- 441: vrlsl GGVrDeaeIRGhrrTyiGamPGkliQsLkkAgsnnPvFlLDEiDKmS tdfrg LON2_MYXXA : 405- 451: vrlsl GGVrDeaeIRGhrrTyvGalPGrfiQsMkkAgtknPvMmLDEiDKlG adfrg LONH_HAEIN : 493- 536: lvhsv GGVnDk--IEGff-TicQrrGLtgkQgViiPmttiQqLsLSDdVKsA vknge LONM_HUMAN : 553- 599: frfsv GGMtDvteIKGhrrTyvGamPGkiiQcLkkTktenPlIlIDEvDKiG rgyqg LONM_SCHPO : 605- 651: frfsv GGLtDvaeIKGhrrTyiGamPGkivQaLkkVqtenPlIlIDEiDKvG kshqg LONM_YEAST : 659- 705: frfsv GGMtDvaeIKGhrrTyiGalPGrvvQaLkkCqtqnPlIlIDEiDKiG hggih LONN_HUMAN : 528- 574: frfsv GGMtDvaeIKGhrrTyvGamPGkiiQcLkkTktenPlIlIDEvDKiG rgyqg LON_BACBR : 382- 428: vrisl GGVrDeaeIRGhrrTyvGalPGriiQgMkqAgtinPvFlLDEiDKlA sdfrg LON_BACSU : 381- 427: vrisl GGVrDeseIRGhrrTyvGamPGriiQgMkkAgklnPvFlLDEiDKmS sdfrg LON_ECOLI : 383- 429: vrmal GGVrDeaeIRGhrrTyiGsmPGkliQkMakVgvknPlFlLDEiDKmS sdmrg LON_ERWAM : 383- 429: vrmal GGVrDeaeIRGhrrTyiGsmPGkliQkMakVgvknPlFlLDEiDKmS sdmrg LON_HAEIN : 383- 429: vrmal GGVrDeaeIRGhrkTyiGalPGkliQkMakVgvknPlFlLDEiDKmA sdmrg C 3: 69.9681 12( 12) G-G-x(2)-D-x(1,3)-I-[EKR]-G-x(2,3)-T-x(2)-[GQ]-x(2)-[GP]-[GL]-x(3)-Q-x-[LMV]-x(2)-[ACPTV]-x(4)-[PQ]-x-[FILM]-x-[IL]-[DS]-[DE]-x-[DV]-K-x-[AGS] Occurences: 12(12) LON1_MYXXA : 395- 441: vrlsl GGvrDeaeIRGhrrTyiGamPGkliQsLkkAgsnnPvFlLDEiDKmS tdfrg LON2_MYXXA : 405- 451: vrlsl GGvrDeaeIRGhrrTyvGalPGrfiQsMkkAgtknPvMmLDEiDKlG adfrg LONH_HAEIN : 493- 536: lvhsv GGvnDk--IEGff-TicQrrGLtgkQgViiPmttiQqLsLSDdVKsA vknge LONM_HUMAN : 553- 599: frfsv GGmtDvteIKGhrrTyvGamPGkiiQcLkkTktenPlIlIDEvDKiG rgyqg LONM_SCHPO : 605- 651: frfsv GGltDvaeIKGhrrTyiGamPGkivQaLkkVqtenPlIlIDEiDKvG kshqg LONM_YEAST : 659- 705: frfsv GGmtDvaeIKGhrrTyiGalPGrvvQaLkkCqtqnPlIlIDEiDKiG hggih LONN_HUMAN : 528- 574: frfsv GGmtDvaeIKGhrrTyvGamPGkiiQcLkkTktenPlIlIDEvDKiG rgyqg LON_BACBR : 382- 428: vrisl GGvrDeaeIRGhrrTyvGalPGriiQgMkqAgtinPvFlLDEiDKlA sdfrg LON_BACSU : 381- 427: vrisl GGvrDeseIRGhrrTyvGamPGriiQgMkkAgklnPvFlLDEiDKmS sdfrg LON_ECOLI : 383- 429: vrmal GGvrDeaeIRGhrrTyiGsmPGkliQkMakVgvknPlFlLDEiDKmS sdmrg LON_ERWAM : 383- 429: vrmal GGvrDeaeIRGhrrTyiGsmPGkliQkMakVgvknPlFlLDEiDKmS sdmrg LON_HAEIN : 383- 429: vrmal GGvrDeaeIRGhrkTyiGalPGkliQkMakVgvknPlFlLDEiDKmA sdmrg D 4: 68.6353 12( 12) G-[LMV]-x-D-x(1,3)-I-[EKR]-G-x(2,3)-T-x(2)-[GQ]-x(2)-[GP]-[GL]-x(3)-Q-x-[LMV]-x(2)-[ACPTV]-x(4)-[PQ]-x-[FILM]-x-[IL]-[DS]-[DE]-x-[DV]-K-x-[AGS] Occurences: 12(12) LON1_MYXXA : 396- 441: rlslg GVrDeaeIRGhrrTyiGamPGkliQsLkkAgsnnPvFlLDEiDKmS tdfrg LON2_MYXXA : 406- 451: rlslg GVrDeaeIRGhrrTyvGalPGrfiQsMkkAgtknPvMmLDEiDKlG adfrg LONH_HAEIN : 494- 536: vhsvg GVnDk--IEGff-TicQrrGLtgkQgViiPmttiQqLsLSDdVKsA vknge LONM_HUMAN : 554- 599: rfsvg GMtDvteIKGhrrTyvGamPGkiiQcLkkTktenPlIlIDEvDKiG rgyqg LONM_SCHPO : 606- 651: rfsvg GLtDvaeIKGhrrTyiGamPGkivQaLkkVqtenPlIlIDEiDKvG kshqg LONM_YEAST : 660- 705: rfsvg GMtDvaeIKGhrrTyiGalPGrvvQaLkkCqtqnPlIlIDEiDKiG hggih LONN_HUMAN : 529- 574: rfsvg GMtDvaeIKGhrrTyvGamPGkiiQcLkkTktenPlIlIDEvDKiG rgyqg LON_BACBR : 383- 428: rislg GVrDeaeIRGhrrTyvGalPGriiQgMkqAgtinPvFlLDEiDKlA sdfrg LON_BACSU : 382- 427: rislg GVrDeseIRGhrrTyvGamPGriiQgMkkAgklnPvFlLDEiDKmS sdfrg LON_ECOLI : 384- 429: rmalg GVrDeaeIRGhrrTyiGsmPGkliQkMakVgvknPlFlLDEiDKmS sdmrg LON_ERWAM : 384- 429: rmalg GVrDeaeIRGhrrTyiGsmPGkliQkMakVgvknPlFlLDEiDKmS sdmrg LON_HAEIN : 384- 429: rmalg GVrDeaeIRGhrkTyiGalPGkliQkMakVgvknPlFlLDEiDKmA sdmrg E 5: 65.9884 12( 12) G-[LMV]-x-D-x(2)-E-x(0,2)-G-x(2,3)-T-x(2)-[GQ]-x(2)-[GP]-[GL]-x(3)-Q-x-[LMV]-x(2)-[ACPTV]-x(4)-[PQ]-x-[FILM]-x-[IL]-[DS]-[DE]-x-[DV]-K-x-[AGS] Occurences: 12(12) LON1_MYXXA : 396- 441: rlslg GVrDeaEirGhrrTyiGamPGkliQsLkkAgsnnPvFlLDEiDKmS tdfrg LON2_MYXXA : 406- 451: rlslg GVrDeaEirGhrrTyvGalPGrfiQsMkkAgtknPvMmLDEiDKlG adfrg LONH_HAEIN : 494- 536: vhsvg GVnDkiE--Gff-TicQrrGLtgkQgViiPmttiQqLsLSDdVKsA vknge LONM_HUMAN : 554- 599: rfsvg GMtDvtEikGhrrTyvGamPGkiiQcLkkTktenPlIlIDEvDKiG rgyqg LONM_SCHPO : 606- 651: rfsvg GLtDvaEikGhrrTyiGamPGkivQaLkkVqtenPlIlIDEiDKvG kshqg LONM_YEAST : 660- 705: rfsvg GMtDvaEikGhrrTyiGalPGrvvQaLkkCqtqnPlIlIDEiDKiG hggih LONN_HUMAN : 529- 574: rfsvg GMtDvaEikGhrrTyvGamPGkiiQcLkkTktenPlIlIDEvDKiG rgyqg LON_BACBR : 383- 428: rislg GVrDeaEirGhrrTyvGalPGriiQgMkqAgtinPvFlLDEiDKlA sdfrg LON_BACSU : 382- 427: rislg GVrDesEirGhrrTyvGamPGriiQgMkkAgklnPvFlLDEiDKmS sdfrg LON_ECOLI : 384- 429: rmalg GVrDeaEirGhrrTyiGsmPGkliQkMakVgvknPlFlLDEiDKmS sdmrg LON_ERWAM : 384- 429: rmalg GVrDeaEirGhrrTyiGsmPGkliQkMakVgvknPlFlLDEiDKmS sdmrg LON_HAEIN : 384- 429: rmalg GVrDeaEirGhrkTyiGalPGkliQkMakVgvknPlFlLDEiDKmA sdmrg F 6: 63.7183 15( 12) S-x(0,1)-A-x(0,1)-L-[AE]-x-L-[DP]-x-[ENP]-Q-x(3)-[FI]-x-[DG]-x(3)-[DEQ]-x-[DGPT]-x-[DV]-x-[ST]-x-[GV]-x-[FV]-x-[ACDT]-x(2)-[EN]-x(4)-[IP]-[ACGP] Occurences: 15(12) LON1_MYXXA : 449- 491: frgdp SaAlLEvLDpEQnhtFnDhylDlDyDlSkVmFiCtaNtmhnIP gplqd LON2_MYXXA : 459- 501: frgdp SaAlLEvLDpEQnntFsDhylDvPfDlSkVmFvAtaNqldpIP gplrd LONH_HAEIN : 466- 506: fcvlv S-A-LAdLPlPQhiaItGsidQfGlVhSvGgVnDkiEgfftIC qrrgl LONM_HUMAN : 607- 649: yqgdp SsAlLElLDpEQnanFlDhylDvPvDlSkVlFiCtaNvtdtIP eplrd LONM_HUMAN : 608- 649: qgdps S-AlLElLDpEQnanFlDhylDvPvDlSkVlFiCtaNvtdtIP eplrd LONM_SCHPO : 660- 701: qgdpa S-AlLElLDsEQnsaFlDyymDiPlDvSsVlFvCtaNtidtIP pplld LONM_YEAST : 714- 756: ihgdp SaAlLEvLDpEQnnsFlDnylDiPiDlSkVlFvCtaNsletIP rplld LONN_HUMAN : 582- 624: yqgdp SsAlLElLDpEQnanFlDhylDvPvDlSkVlFiCtaNvtdtIP eplrd LONN_HUMAN : 583- 624: qgdps S-AlLElLDpEQnanFlDhylDvPvDlSkVlFiCtaNvtdtIP eplrd LON_BACBR : 437- 478: rgdpa S-AlLEvLDpNQndkFsDhyiEeTyDlTnVmFiTtaNsldtIP rplld LON_BACSU : 435- 477: frgdp SsAmLEvLDpEQnssFsDhyiEeTfDlSkVlFiAtaNnlatIP gplrd LON_BACSU : 436- 477: rgdps S-AmLEvLDpEQnssFsDhyiEeTfDlSkVlFiAtaNnlatIP gplrd LON_ECOLI : 438- 479: rgdpa S-AlLEvLDpEQnvaFsDhylEvDyDlSdVmFvAtsNsmniPA plldr LON_ERWAM : 438- 479: rgdpa S-AlLEvLDpEQniaFnDhylEvDyDlSdVmFvAtsNsmniPA plldr LON_HAEIN : 438- 479: rgdpa S-AlLEvLDpEQnttFnDhylEvDyDlSdVmFvAtsNsmniPG plldr G 7: 60.4929 12( 12) S-A-x(0,1)-L-x(2,3)-L-[DP]-x-[ENP]-Q-x(3)-[FI]-x-[DG]-x(3)-[DEQ]-x-[DGPT]-x-[DV]-x-[ST]-x-[GV]-x-[FV]-x-[ACDT]-x(2)-[EN]-x(4)-[IP]-[ACGP] Occurences: 12(12) LON1_MYXXA : 449- 491: frgdp SAaLlevLDpEQnhtFnDhylDlDyDlSkVmFiCtaNtmhnIP gplqd LON2_MYXXA : 459- 501: frgdp SAaLlevLDpEQnntFsDhylDvPfDlSkVmFvAtaNqldpIP gplrd LONH_HAEIN : 466- 506: fcvlv SA-Lad-LPlPQhiaItGsidQfGlVhSvGgVnDkiEgfftIC qrrgl LONM_HUMAN : 608- 649: qgdps SAlLel-LDpEQnanFlDhylDvPvDlSkVlFiCtaNvtdtIP eplrd LONM_HUMAN : 608- 649: qgdps SA-LlelLDpEQnanFlDhylDvPvDlSkVlFiCtaNvtdtIP eplrd LONM_SCHPO : 660- 701: qgdpa SAlLel-LDsEQnsaFlDyymDiPlDvSsVlFvCtaNtidtIP pplld LONM_SCHPO : 660- 701: qgdpa SA-LlelLDsEQnsaFlDyymDiPlDvSsVlFvCtaNtidtIP pplld LONM_YEAST : 714- 756: ihgdp SAaLlevLDpEQnnsFlDnylDiPiDlSkVlFvCtaNsletIP rplld LONN_HUMAN : 583- 624: qgdps SAlLel-LDpEQnanFlDhylDvPvDlSkVlFiCtaNvtdtIP eplrd LONN_HUMAN : 583- 624: qgdps SA-LlelLDpEQnanFlDhylDvPvDlSkVlFiCtaNvtdtIP eplrd LON_BACBR : 437- 478: rgdpa SAlLev-LDpNQndkFsDhyiEeTyDlTnVmFiTtaNsldtIP rplld LON_BACBR : 437- 478: rgdpa SA-LlevLDpNQndkFsDhyiEeTyDlTnVmFiTtaNsldtIP rplld LON_BACSU : 436- 477: rgdps SAmLev-LDpEQnssFsDhyiEeTfDlSkVlFiAtaNnlatIP gplrd LON_ECOLI : 438- 479: rgdpa SAlLev-LDpEQnvaFsDhylEvDyDlSdVmFvAtsNsmniPA plldr LON_ECOLI : 438- 479: rgdpa SA-LlevLDpEQnvaFsDhylEvDyDlSdVmFvAtsNsmniPA plldr LON_ERWAM : 438- 479: rgdpa SAlLev-LDpEQniaFnDhylEvDyDlSdVmFvAtsNsmniPA plldr LON_ERWAM : 438- 479: rgdpa SA-LlevLDpEQniaFnDhylEvDyDlSdVmFvAtsNsmniPA plldr LON_HAEIN : 438- 479: rgdpa SAlLev-LDpEQnttFnDhylEvDyDlSdVmFvAtsNsmniPG plldr LON_HAEIN : 438- 479: rgdpa SA-LlevLDpEQnttFnDhylEvDyDlSdVmFvAtsNsmniPG plldr H 8: 55.1109 12( 12) P-x(0,1)-S-A-x-L-x(0,2)-E-x(3)-[GPS]-[EN]-x-[DN]-x(4)-[DS]-x(2)-[ILM]-x(4)-[DV]-x-[AST]-x-[AV]-x-[FL]-[IPV]-x-[PT]-[AQS] Occurences: 12(12) LON1_MYXXA : 448- 484: dfrgd P-SAaLl-EvldPEqNhtfnDhyLdldyDlSkVmFIcTA ntmhn LON2_MYXXA : 458- 494: dfrgd P-SAaLl-EvldPEqNntfsDhyLdvpfDlSkVmFVaTA nqldp LONH_HAEIN : 437- 475: lpsql PfSAsLvfEqsyGEiDgdsaSlaIfcvlVsAlAdLPlPQ hiait LONM_HUMAN : 606- 642: gyqgd PsSAlL--ElldPEqNanflDhyLdvpvDlSkVlFIcTA nvtdt LONM_SCHPO : 658- 694: shqgd PaSAlL--ElldSEqNsaflDyyMdiplDvSsVlFVcTA ntidt LONM_YEAST : 713- 749: gihgd P-SAaLl-EvldPEqNnsflDnyLdipiDlSkVlFVcTA nslet LONN_HUMAN : 581- 617: gyqgd PsSAlL--ElldPEqNanflDhyLdvpvDlSkVlFIcTA nvtdt LON_BACBR : 435- 471: dfrgd PaSAlL--EvldPNqNdkfsDhyIeetyDlTnVmFItTA nsldt LON_BACSU : 434- 470: dfrgd PsSAmL--EvldPEqNssfsDhyIeetfDlSkVlFIaTA nnlat LON_ECOLI : 436- 472: dmrgd PaSAlL--EvldPEqNvafsDhyLevdyDlSdVmFVaTS nsmni LON_ERWAM : 436- 472: dmrgd PaSAlL--EvldPEqNiafnDhyLevdyDlSdVmFVaTS nsmni LON_HAEIN : 436- 472: dmrgd PaSAlL--EvldPEqNttfnDhyLevdyDlSdVmFVaTS nsmni I 9: 54.1567 12( 12) G-x(0,1)-P-[PV]-[CG]-[FV]-G-[EK]-[PT]-S-x(2,3)-S-x-[AI]-x-[AQS]-x-[GN]-[DR]-x(2)-[FV]-x(2)-[ASV] Occurences: 12(12) LON1_MYXXA : 368- 393: vlcfv G-PPGVGKTSlarSiArAtGRkfVrlS lggvr LON2_MYXXA : 378- 403: ilclv G-PPGVGKTSlgqSvAkAtGRkfVrlS lggvr LONH_HAEIN : 379- 404: vieyp GtPVCFGEPSri-ScIvQfGDgeVidV erkne LONM_HUMAN : 526- 551: ilcfy G-PPGVGKTSiarSiArAlNReyFrfS vggmt LONM_SCHPO : 578- 603: imclv G-PPGVGKTSvgkSiAsAlNRefFrfS vgglt LONM_YEAST : 632- 657: iicfv G-PPGVGKTSigkSiArAlNRkfFrfS vggmt LONN_HUMAN : 501- 526: ilcfy G-PPGVGKTSiarSiArAlNReyFrfS vggmt LON_BACBR : 355- 380: ilclv G-PPGVGKTSlarSvArAlGRefVriS lggvr LON_BACSU : 354- 379: ilcla G-PPGVGKTSlakSiAkSlGRkfVriS lggvr LON_ECOLI : 356- 381: ilclv G-PPGVGKTSlgqSiAkAtGRkyVrmA lggvr LON_ERWAM : 356- 381: ilclv G-PPGVGKTSlgqSiAkAtGRkyVrmA lggvr LON_HAEIN : 356- 381: ilclv G-PPGVGKTSlgqSiAnAtGRkyVrmA lggvr J 10: 51.9516 12( 12) T-G-[ES]-[AILV]-[DST]-x(2)-G-x(0,2)-L-x(3,4)-G-[GIL]-x(2)-[DK]-x-[ILMV]-[AEGS]-[AG]-x(2)-[AGST]-[GI]-x(4)-[GILV]-x-[PT] Occurences: 12(12) LON1_MYXXA : 716- 749: rdvam TGEITlrGrvLpig-GLkeKtLAAhrAGiktvLiP kankk LON2_MYXXA : 726- 759: hdtam TGEATlrGlvLpvg-GIkeKvLAAhrAGikrvIlP ercrk LONH_HAEIN : 480- 512: qhiai TGSIDqfG--LvhsvGGvnDkIEGffTIcqrrGlT gkqgv LONM_HUMAN : 883- 916: qnlam TGEVSltGkiLpvg-GIkeKtIAAkrAGvtciVlP aenkk LONM_SCHPO : 971- 1004: attam TGELTltGkiLrig-GLreKtVAAklSGmkeiLfP ksnla LONM_YEAST : 1040- 1073: ptvam TGELTltGkvLrig-GLreKaVAAkrSGaktiIfP kdnln LONN_HUMAN : 858- 891: qnlam TGEVSltGkiLpvg-GIkeKtIAAkrAGvtciIlP aenkk LON_BACBR : 703- 736: kevgm TGEITlrGrvLpig-GLkeKcMSAhrAGlttiIlP kdnek LON_BACSU : 702- 735: revgm TGEITlrGrvLpig-GLkeKaLGAhrAGlttiIaP kdnek LON_ECOLI : 704- 737: advam TGEITlrGqvLpig-GLkeKlLAAhrGGiktvLiP fenkr LON_ERWAM : 704- 737: advam TGEITlrGqvLpig-GLkeKlLAAhrGGiktvLiP denkr LON_HAEIN : 704- 737: advam TGEISlrGkvLpig-GLkeKlLAAhrGGiktvLiP kenvk K 11: 50.9759 12( 12) G-x(0,1)-P-x-[CG]-[FV]-G-[EK]-[PT]-S-x(2,3)-S-x-[AI]-x-[AQS]-x-[GN]-[DR]-x(2)-[FV]-x(2)-[ASV] Occurences: 12(12) LON1_MYXXA : 368- 393: vlcfv G-PpGVGKTSlarSiArAtGRkfVrlS lggvr LON2_MYXXA : 378- 403: ilclv G-PpGVGKTSlgqSvAkAtGRkfVrlS lggvr LONH_HAEIN : 379- 404: vieyp GtPvCFGEPSri-ScIvQfGDgeVidV erkne LONM_HUMAN : 526- 551: ilcfy G-PpGVGKTSiarSiArAlNReyFrfS vggmt LONM_SCHPO : 578- 603: imclv G-PpGVGKTSvgkSiAsAlNRefFrfS vgglt LONM_YEAST : 632- 657: iicfv G-PpGVGKTSigkSiArAlNRkfFrfS vggmt LONN_HUMAN : 501- 526: ilcfy G-PpGVGKTSiarSiArAlNReyFrfS vggmt LON_BACBR : 355- 380: ilclv G-PpGVGKTSlarSvArAlGRefVriS lggvr LON_BACSU : 354- 379: ilcla G-PpGVGKTSlakSiAkSlGRkfVriS lggvr LON_ECOLI : 356- 381: ilclv G-PpGVGKTSlgqSiAkAtGRkyVrmA lggvr LON_ERWAM : 356- 381: ilclv G-PpGVGKTSlgqSiAkAtGRkyVrmA lggvr LON_HAEIN : 356- 381: ilclv G-PpGVGKTSlgqSiAnAtGRkyVrmA lggvr L 12: 47.6532 12( 12) G-x(0,1)-P-x(2)-[FV]-G-[EK]-[PT]-S-x(2,3)-S-x-[AI]-x-[AQS]-x-[GN]-[DR]-x(2)-[FV]-x(2)-[ASV] Occurences: 12(12) LON1_MYXXA : 368- 393: vlcfv G-PpgVGKTSlarSiArAtGRkfVrlS lggvr LON2_MYXXA : 378- 403: ilclv G-PpgVGKTSlgqSvAkAtGRkfVrlS lggvr LONH_HAEIN : 379- 404: vieyp GtPvcFGEPSri-ScIvQfGDgeVidV erkne LONM_HUMAN : 526- 551: ilcfy G-PpgVGKTSiarSiArAlNReyFrfS vggmt LONM_SCHPO : 578- 603: imclv G-PpgVGKTSvgkSiAsAlNRefFrfS vgglt LONM_YEAST : 632- 657: iicfv G-PpgVGKTSigkSiArAlNRkfFrfS vggmt LONN_HUMAN : 501- 526: ilcfy G-PpgVGKTSiarSiArAlNReyFrfS vggmt LON_BACBR : 355- 380: ilclv G-PpgVGKTSlarSvArAlGRefVriS lggvr LON_BACSU : 354- 379: ilcla G-PpgVGKTSlakSiAkSlGRkfVriS lggvr LON_ECOLI : 356- 381: ilclv G-PpgVGKTSlgqSiAkAtGRkyVrmA lggvr LON_ERWAM : 356- 381: ilclv G-PpgVGKTSlgqSiAkAtGRkyVrmA lggvr LON_HAEIN : 356- 381: ilclv G-PpgVGKTSlgqSiAnAtGRkyVrmA lggvr M 13: 46.1703 15( 12) A-x(0,1)-L-x(2,3)-L-x(2)-[DEN]-Q-x(3)-F-x-[DS]-x(2)-[ILM]-[DEH]-x(3)-[DQ]-x(3)-[LV]-[LMV]-x-[GIV]-x-[TV] Occurences: 15(12) LON1_MYXXA : 450- 483: rgdps AaLlevLdpEQnhtFnDhyLDldyDlskVMfIcT antmh LON1_MYXXA : 451- 483: gdpsa AlLev-LdpEQnhtFnDhyLDldyDlskVMfIcT antmh LON1_MYXXA : 451- 483: gdpsa A-LlevLdpEQnhtFnDhyLDldyDlskVMfIcT antmh LON2_MYXXA : 460- 493: rgdps AaLlevLdpEQnntFsDhyLDvpfDlskVMfVaT anqld LON2_MYXXA : 461- 493: gdpsa AlLev-LdpEQnntFsDhyLDvpfDlskVMfVaT anqld LON2_MYXXA : 461- 493: gdpsa A-LlevLdpEQnntFsDhyLDvpfDlskVMfVaT anqld LONH_HAEIN : 133- 164: asqge A-Lsa-LycDQfqlFgSfrIHprsQdiqLVpGlV hkang LONM_HUMAN : 609- 641: gdpss AlLel-LdpEQnanFlDhyLDvpvDlskVLfIcT anvtd LONM_HUMAN : 609- 641: gdpss A-LlelLdpEQnanFlDhyLDvpvDlskVLfIcT anvtd LONM_SCHPO : 661- 693: gdpas AlLel-LdsEQnsaFlDyyMDiplDvssVLfVcT antid LONM_SCHPO : 661- 693: gdpas A-LlelLdsEQnsaFlDyyMDiplDvssVLfVcT antid LONM_YEAST : 715- 748: hgdps AaLlevLdpEQnnsFlDnyLDipiDlskVLfVcT ansle LONM_YEAST : 716- 748: gdpsa AlLev-LdpEQnnsFlDnyLDipiDlskVLfVcT ansle LONM_YEAST : 716- 748: gdpsa A-LlevLdpEQnnsFlDnyLDipiDlskVLfVcT ansle LONN_HUMAN : 584- 616: gdpss AlLel-LdpEQnanFlDhyLDvpvDlskVLfIcT anvtd LONN_HUMAN : 584- 616: gdpss A-LlelLdpEQnanFlDhyLDvpvDlskVLfIcT anvtd LON_BACBR : 438- 470: gdpas AlLev-LdpNQndkFsDhyIEetyDltnVMfItT ansld LON_BACBR : 438- 470: gdpas A-LlevLdpNQndkFsDhyIEetyDltnVMfItT ansld LON_BACSU : 437- 469: gdpss AmLev-LdpEQnssFsDhyIEetfDlskVLfIaT annla LON_ECOLI : 439- 471: gdpas AlLev-LdpEQnvaFsDhyLEvdyDlsdVMfVaT snsmn LON_ECOLI : 439- 471: gdpas A-LlevLdpEQnvaFsDhyLEvdyDlsdVMfVaT snsmn LON_ERWAM : 439- 471: gdpas AlLev-LdpEQniaFnDhyLEvdyDlsdVMfVaT snsmn LON_ERWAM : 439- 471: gdpas A-LlevLdpEQniaFnDhyLEvdyDlsdVMfVaT snsmn LON_HAEIN : 439- 471: gdpas AlLev-LdpEQnttFnDhyLEvdyDlsdVMfVaT snsmn LON_HAEIN : 439- 471: gdpas A-LlevLdpEQnttFnDhyLEvdyDlsdVMfVaT snsmn N 14: 45.9652 15( 12) L-x(3,4)-Q-[NT]-x(2)-F-x(0,1)-D-x-Y-x-[ADE]-x-[DPT]-x-[DK]-x(3)-[CV]-x-[FI]-[IPV]-[ACST]-x-[AS] Occurences: 15(12) LON1_MYXXA : 456- 484: allev Ldpe-QNhtFnDhYlDlDyDlskVmFICtA ntmhn LON2_MYXXA : 466- 494: allev Ldpe-QNntFsDhYlDvPfDlskVmFVAtA nqldp LONH_HAEIN : 189- 217: dlwgr LkqilQTqtF-DwYsAhPfKnlpCdIPSyA lnlkv LONM_HUMAN : 613- 642: salle LldpeQNanFlDhYlDvPvDlskVlFICtA nvtdt LONM_HUMAN : 614- 642: allel Ldpe-QNanFlDhYlDvPvDlskVlFICtA nvtdt LONM_SCHPO : 665- 694: salle LldseQNsaFlDyYmDiPlDvssVlFVCtA ntidt LONM_SCHPO : 666- 694: allel Ldse-QNsaFlDyYmDiPlDvssVlFVCtA ntidt LONM_YEAST : 721- 749: allev Ldpe-QNnsFlDnYlDiPiDlskVlFVCtA nslet LONN_HUMAN : 588- 617: salle LldpeQNanFlDhYlDvPvDlskVlFICtA nvtdt LONN_HUMAN : 589- 617: allel Ldpe-QNanFlDhYlDvPvDlskVlFICtA nvtdt LON_BACBR : 443- 471: allev Ldpn-QNdkFsDhYiEeTyDltnVmFITtA nsldt LON_BACSU : 442- 470: amlev Ldpe-QNssFsDhYiEeTfDlskVlFIAtA nnlat LON_ECOLI : 444- 472: allev Ldpe-QNvaFsDhYlEvDyDlsdVmFVAtS nsmni LON_ERWAM : 444- 472: allev Ldpe-QNiaFnDhYlEvDyDlsdVmFVAtS nsmni LON_HAEIN : 444- 472: allev Ldpe-QNttFnDhYlEvDyDlsdVmFVAtS nsmni O 15: 44.4417 12( 12) G-x(0,1)-P-x(3)-G-[EK]-[PT]-S-x(2,3)-S-x-[AI]-x-[AQS]-x-[GN]-[DR]-x(2)-[FV]-x(2)-[ASV] Occurences: 12(12) LON1_MYXXA : 368- 393: vlcfv G-PpgvGKTSlarSiArAtGRkfVrlS lggvr LON2_MYXXA : 378- 403: ilclv G-PpgvGKTSlgqSvAkAtGRkfVrlS lggvr LONH_HAEIN : 379- 404: vieyp GtPvcfGEPSri-ScIvQfGDgeVidV erkne LONM_HUMAN : 526- 551: ilcfy G-PpgvGKTSiarSiArAlNReyFrfS vggmt LONM_SCHPO : 578- 603: imclv G-PpgvGKTSvgkSiAsAlNRefFrfS vgglt LONM_YEAST : 632- 657: iicfv G-PpgvGKTSigkSiArAlNRkfFrfS vggmt LONN_HUMAN : 501- 526: ilcfy G-PpgvGKTSiarSiArAlNReyFrfS vggmt LON_BACBR : 355- 380: ilclv G-PpgvGKTSlarSvArAlGRefVriS lggvr LON_BACSU : 354- 379: ilcla G-PpgvGKTSlakSiAkSlGRkfVriS lggvr LON_ECOLI : 356- 381: ilclv G-PpgvGKTSlgqSiAkAtGRkyVrmA lggvr LON_ERWAM : 356- 381: ilclv G-PpgvGKTSlgqSiAkAtGRkyVrmA lggvr LON_HAEIN : 356- 381: ilclv G-PpgvGKTSlgqSiAnAtGRkyVrmA lggvr P 16: 43.0728 12( 12) L-x-[GV]-x-[IV]-L-x(0,2)-G-[GN]-x(2)-E-x(4)-A-[EHK]-x-[AEGS]-[EG]-x(4)-[FILV]-x-[DP] Occurences: 12(12) LON1_MYXXA : 721- 749: tgeit LrGrVLpiGGlkEktlaAHrAGiktvLiP kankk LON2_MYXXA : 731- 759: tgeat LrGlVLpvGGikEkvlaAHrAGikrvIlP ercrk LONH_HAEIN : 220- 246: syaln LkViVL--GNrtElatlAElEEnlysFaD yaeie LONM_HUMAN : 888- 916: tgevs LtGkILpvGGikEktiaAKrAGvtciVlP aenkk LONM_SCHPO : 976- 1004: tgelt LtGkILriGGlrEktvaAKlSGmkeiLfP ksnla LONM_YEAST : 1045- 1073: tgelt LtGkVLriGGlrEkavaAKrSGaktiIfP kdnln LONN_HUMAN : 863- 891: tgevs LtGkILpvGGikEktiaAKrAGvtciIlP aenkk LON_BACBR : 708- 736: tgeit LrGrVLpiGGlkEkcmsAHrAGlttiIlP kdnek LON_BACSU : 707- 735: tgeit LrGrVLpiGGlkEkalgAHrAGlttiIaP kdnek LON_ECOLI : 709- 737: tgeit LrGqVLpiGGlkEkllaAHrGGiktvLiP fenkr LON_ERWAM : 709- 737: tgeit LrGqVLpiGGlkEkllaAHrGGiktvLiP denkr LON_HAEIN : 709- 737: tgeis LrGkVLpiGGlkEkllaAHrGGiktvLiP kenvk Q 17: 38.5128 12( 12) R-x(3)-R-x(3)-G-x(2,3)-D-x(1,2)-E-x-[KR]-[GS]-[FH]-x-[HKR]-x-[FY]-x-[GS] Occurences: 12(12) LON1_MYXXA : 387- 412: aratg RkfvRlslGgvrDeaEiRGHrRtYiG ampgk LON2_MYXXA : 397- 422: akatg RkfvRlslGgvrDeaEiRGHrRtYvG alpgr LONH_HAEIN : 578- 601: tesls RliqRrieGra-Ds-ErKSFwHfFrS LONM_HUMAN : 545- 570: araln ReyfRfsvGgmtDvtEiKGHrRtYvG ampgk LONM_SCHPO : 597- 622: asaln ReffRfsvGgltDvaEiKGHrRtYiG ampgk LONM_YEAST : 651- 676: araln RkffRfsvGgmtDvaEiKGHrRtYiG alpgr LONN_HUMAN : 520- 545: araln ReyfRfsvGgmtDvaEiKGHrRtYvG ampgk LON_BACBR : 374- 399: aralg RefvRislGgvrDeaEiRGHrRtYvG alpgr LON_BACSU : 373- 398: akslg RkfvRislGgvrDesEiRGHrRtYvG ampgr LON_ECOLI : 375- 400: akatg RkyvRmalGgvrDeaEiRGHrRtYiG smpgk LON_ERWAM : 375- 400: akatg RkyvRmalGgvrDeaEiRGHrRtYiG smpgk LON_HAEIN : 375- 400: anatg RkyvRmalGgvrDeaEiRGHrKtYiG alpgk R 18: 33.9749 17( 12) V-x(1,2)-G-L-[AGV]-[HWY]-x(3)-G-G-x(2)-[ILM]-x(2)-[AE]-[ASTV] Occurences: 17(12) LON1_MYXXA : 610- 627: dqvgi Vt-GLAWtelGGeiLttEA timpg LON2_MYXXA : 619- 637: tevpg VatGLAWtaaGGdlLfiEA tkmag LONH_HAEIN : 160- 177: qdiql Vp-GLVHkanGGvlIlsAA tllsq LONM_HUMAN : 767- 785: vtppg VvmGLAWtamGGstLfvET slrrp LONM_HUMAN : 768- 785: tppgv Vm-GLAWtamGGstLfvET slrrp LONM_SCHPO : 859- 877: ttppg VvmGLGWtpmGGvsMyvET ivkni LONM_SCHPO : 860- 877: tppgv Vm-GLGWtpmGGvsMyvET ivkni LONM_YEAST : 928- 946: ttppg VvmGLAWtnmGGcsLyvES vleqp LONM_YEAST : 929- 946: tppgv Vm-GLAWtnmGGcsLyvES vleqp LONN_HUMAN : 742- 760: vtppg VvmGLAWtamGGstLfvET slrrp LONN_HUMAN : 743- 760: tppgv Vm-GLAWtamGGstLfvET slrrp LON_BACBR : 597- 614: dqvgs Vt-GLAWtqaGGdtLnvEV silag LON_BACSU : 595- 613: edqvg VvtGLAYttvGGdtLsiEV slspg LON_BACSU : 596- 613: dqvgv Vt-GLAYttvGGdtLsiEV slspg LON_ECOLI : 598- 615: nrvgq Vt-GLAWtevGGdlLtiET acvpg LON_ERWAM : 598- 615: nrvgq Vt-GLAWtevGGdlLtiET acvpg LON_HAEIN : 598- 615: nrige Vt-GLAWtevGGdlLtiET asvvg S 19: 32.0488 12( 12) G-[DE]-[AP]-x-[AS]-A-x(0,1)-L-x(2,3)-D-[PQS]-x-Q Occurences: 12(12) LON1_MYXXA : 446- 460: stdfr GDPsAAlLevlDPeQ nhtfn LON2_MYXXA : 456- 470: gadfr GDPsAAlLevlDPeQ nntfs LONH_HAEIN : 131- 143: nfasq GEAlSA-Lyc-DQfQ lfgsf LONM_HUMAN : 604- 618: grgyq GDPsSAlLellDPeQ nanfl LONM_SCHPO : 656- 670: gkshq GDPaSAlLellDSeQ nsafl LONM_YEAST : 711- 725: hggih GDPsAAlLevlDPeQ nnsfl LONN_HUMAN : 579- 593: grgyq GDPsSAlLellDPeQ nanfl LON_BACBR : 433- 447: asdfr GDPaSAlLevlDPnQ ndkfs LON_BACSU : 432- 446: ssdfr GDPsSAmLevlDPeQ nssfs LON_ECOLI : 434- 448: ssdmr GDPaSAlLevlDPeQ nvafs LON_ERWAM : 434- 448: ssdmr GDPaSAlLevlDPeQ niafn LON_HAEIN : 434- 448: asdmr GDPaSAlLevlDPeQ nttfn T 20: 27.5721 12( 12) Y-x(1,2)-L-x-[EQ]-Q-x(3,4)-I-x(2)-E-x-[DGV]-x(3)-[DEGNT] Occurences: 12(12) LON1_MYXXA : 240- 258: ktqke Yy-LnEQmqa-IqkElGerdE fknei LON2_MYXXA : 250- 268: ktqre Yy-LrQQlka-IkeElGemgE eeeel LONH_HAEIN : 341- 361: qklaq YgfLkEQtyadIlnEqVyveT qgeiv LONM_HUMAN : 397- 415: qthrk Yl-LqEQlki-IkkElGlekD dkdai LONM_SCHPO : 449- 467: qrhke Yl-LtEQlkq-IkrElGqelD skeal LONM_YEAST : 504- 522: krqre Yy-LmEQlkg-IkrElGiddG rdkli LONN_HUMAN : 372- 390: qthrk Yl-LqEQlki-IkkElGlekD dkdai LON_BACBR : 227- 245: rtqke Yy-LrEQmka-IqkElGdkdG rqgev LON_BACSU : 226- 244: rtqke Yy-LrEQmka-IqkElGdkeG ktgev LON_ECOLI : 228- 246: ksqre Yy-LnEQmka-IqkElGemdD apden LON_ERWAM : 228- 246: ksqre Yy-LnEQmka-IqkElGemdD apden LON_HAEIN : 226- 244: ksqrn Yy-LnEQika-IrkEmDggeN edtid Number of patterns evaluated by Pratt:35470 Total running time: 62 seconds