------------------------------------------------------------
                Pratt version 2.1, Sept. 1996
                 Written by Inge Jonassen, 
                   University of Bergen
                           Norway
                   email: inge@ii.uib.no
                 For more information, see 
            http://www.ii.uib.no/~inge/Pratt.html
------------------------------------------------------------
                        Please quote:
             I.Jonassen, J.F.Collins, D.G.Higgins.
             Protein Science 1995;4(8):1587-1595.
------------------------------------------------------------



                Pratt version 2.1 

        Analysing 36 sequences from file LIPOYL

PATTERN CONSERVATION:
   CM: min Nr of Seqs to Match                 36
   C%: min Percentage Seqs to Match         100.0

PATTERN RESTRICTIONS :
   PP: pos in seq [off,complete,start]        off
   PL: max Pattern Length                      50
   PN: max Nr of Pattern Symbols               50
   PX: max Nr of consecutive x's                5
   FN: max Nr of flexible spacers               2
   FL: max Flexibility                          2
   FP: max Flex.Product                        10
   BI: Input Pattern Symbol File              off
   BN: Nr of Pattern Symbols Initial Search    20

PATTERN SCORING:
   S: Scoring [info,mdl,tree,dist,ppv]       info

SEARCH PARAMETERS:
   G: Pattern Graph from [seq,al,query]       seq
   E: Search Greediness                         3
   R: Pattern Refinement                       on
   RG: Generalise ambiguous symbols           off

OUTPUT:
   OF: Output Filename              LIPOYL.pratt2
   OP: PROSITE Pattern Format                  on
   ON: max number patterns                     20
   OA: max number Alignments                   20
   M: Print Patterns in sequences             off




Sequence lengths:
    ACOC_ALCEU    373
    GCSH_ARATH    165
    GCSH_BOVIN    173
    GCSH_CHICK    164
    GCSH_ECOLI    129
    GCSH_FLATR    165
    GCSH_HUMAN    173
      GCSH_PEA    165
    ODB2_BACSU    424
    ODB2_BOVIN    482
    ODB2_HUMAN    482
    ODB2_PSEPU    423
    ODO2_AZOVI    398
    ODO2_BACSU    417
    ODO2_BOVIN     16
    ODO2_ECOLI    405
    ODO2_HAEIN    409
    ODO2_HUMAN    453
    ODO2_PSEPU     62
      ODO2_RAT    442
    ODO2_YEAST    475
    ODP2_AZOVI    637
    ODP2_BACST    427
    ODP2_BACSU    441
    ODP2_BOVIN     10
    ODP2_DICDI    592
    ODP2_ECOLI    629
    ODP2_HAEIN    567
    ODP2_HUMAN    615
    ODP2_NEUCR    458
      ODP2_RAT    555
    ODP2_YEAST    482
    ODPX_BOVIN     22
    ODPX_YEAST    410
    OPD2_ACHLA    544
    YAE4_YEAST    177

Pratt run started at Thu Feb  6 20:11:01 1997

No patterns found