------------------------------------------------------------
                Pratt version 2.1, Sept. 1996
                 Written by Inge Jonassen, 
                   University of Bergen
                           Norway
                   email: inge@ii.uib.no
                 For more information, see 
            http://www.ii.uib.no/~inge/Pratt.html
------------------------------------------------------------
                        Please quote:
             I.Jonassen, J.F.Collins, D.G.Higgins.
             Protein Science 1995;4(8):1587-1595.
------------------------------------------------------------



                Pratt version 2.1 

        Analysing 73 sequences from file LIPOCALIN

PATTERN CONSERVATION:
   CM: min Nr of Seqs to Match                 73
   C%: min Percentage Seqs to Match         100.0

PATTERN RESTRICTIONS :
   PP: pos in seq [off,complete,start]        off
   PL: max Pattern Length                      50
   PN: max Nr of Pattern Symbols               50
   PX: max Nr of consecutive x's                5
   FN: max Nr of flexible spacers               2
   FL: max Flexibility                          2
   FP: max Flex.Product                        10
   BI: Input Pattern Symbol File              off
   BN: Nr of Pattern Symbols Initial Search    20

PATTERN SCORING:
   S: Scoring [info,mdl,tree,dist,ppv]       info

SEARCH PARAMETERS:
   G: Pattern Graph from [seq,al,query]       seq
   E: Search Greediness                         3
   R: Pattern Refinement                       on
   RG: Generalise ambiguous symbols           off

OUTPUT:
   OF: Output Filename           LIPOCALIN.pratt2
   OP: PROSITE Pattern Format                  on
   ON: max number patterns                     20
   OA: max number Alignments                   20
   M: Print Patterns in sequences             off




Sequence lengths:
    A1AG_HUMAN    201
    A1AG_MOUSE    207
    A1AG_MUSCR    207
    A1AG_RABIT    201
      A1AG_RAT    205
    A1AH_HUMAN    201
    A1AH_MUSCR    207
     APD_HUMAN    189
     APD_RABIT    189
       APD_RAT    189
    APHR_CRICR    167
     BBP_PIEBR    173
    CO8G_HUMAN    202
    CRA2_HOMGA    174
    CRC1_HOMGA    181
      ERBP_RAT    188
    ESP4_LACVV    172
      HC_BOVIN     14
      HC_HUMAN    352
        HC_PIG    337
      HC_PLEPL    355
    ICYA_MANSE    189
    ICYB_MANSE    206
    LACA_CANFA    161
    LACA_EQUAS    163
    LACA_FELCA    163
    LACA_HORSE    163
    LACB_BOVIN    178
    LACB_BUBAR    162
    LACB_CAPHI    180
    LACB_EQUAS    162
    LACB_FELCA    162
    LACB_HORSE    162
    LACB_MACGI    155
      LACB_PIG    160
    LACB_SHEEP    180
    LACC_CANFA    161
    LACC_FELCA    162
    LALP_MACEU    176
    LIPO_BUFMA    183
    MUP1_MOUSE    180
    MUP2_MOUSE    180
    MUP4_MOUSE    178
    MUP5_MOUSE    180
    MUP6_MOUSE    180
    MUP8_MOUSE    151
    MUPM_MOUSE    184
       MUP_RAT    181
    NGAL_HUMAN    198
    NGAL_MOUSE    200
      NGAL_RAT    198
     OBP_BOVIN    159
       OBP_RAT    172
    OLFA_RANPI    177
      PBAS_RAT    177
    PGHD_HUMAN    190
      PGHD_RAT    188
    PP14_HUMAN    180
    PURP_CHICK    196
     QSP_CHICK    178
    RET1_ONCMY    176
    RET2_ONCMY    176
    RETB_BOVIN    183
    RETB_CHICK    196
    RETB_HUMAN    199
    RETB_MOUSE    179
      RETB_PIG    201
    RETB_RABIT    182
      RETB_RAT    201
    RETB_XENLA    197
      VEG1_RAT    177
      VEG2_RAT    177
    VEGP_HUMAN    176

Pratt run started at Thu Feb  6 20:10:49 1997

No patterns found