------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 9 sequences from file LIPASE_GDSL_SER PATTERN CONSERVATION: CM: min Nr of Seqs to Match 9 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename LIPASE_GDSL_SER.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: APG_ARATH 534 APG_BRANA 449 ESTE_VIBMI 200 GCAT_AERHY 335 HLT_VIBPA 418 LIP1_PHOLU 645 PHLX_RABIT 1458 TESA_ECOLI 208 YTRP_PSEPU 592 Pratt run started at Thu Feb 6 20:10:44 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 16.1802 10( 9) G-D-S-x(3,4)-G 2: 14.6802 16( 9) A-x(0,2)-A-x(3,5)-L-x(3)-G 3: 12.5102 11( 9) G-x-N-D 4: 12.0102 13( 9) L-x-L-x(3,4)-A 5: 12.0102 17( 9) L-x(0,1)-L-x(4)-A 6: 12.0102 12( 9) L-x(5)-Q-x(4,5)-L 7: 12.0102 19( 9) L-x(2,3)-L-x(2)-L 8: 12.0102 12( 9) G-D-x(4,5)-G 9: 12.0102 10( 9) S-x(2,3)-T-x(5)-A 10: 12.0102 9( 9) S-x(1,2)-T-x(5)-A 11: 12.0102 10( 9) S-x(2,3)-D-T 12: 12.0102 11( 9) L-x(4)-S-x(1,2)-S 13: 12.0102 12( 9) A-x(3)-L-x(2,3)-G 14: 12.0102 13( 9) A-x(3,4)-L-x-L 15: 12.0102 11( 9) A-x-S-x(0,1)-A 16: 11.5102 12( 9) F-x(3,4)-L-x(3,4)-L 17: 11.5102 20( 9) A-x(3)-A-x(2,4)-L 18: 11.5102 19( 9) A-x(3,4)-A-x(2,3)-L 19: 11.5102 27( 9) A-x(2,3)-A-x(2,3)-L 20: 11.5102 16( 9) D-x-L-x(1,3)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 18.4131 10( 9) G-D-S-x(3,4)-G-x(3)-[GNPS] B 2: 14.6802 16( 9) A-x(0,2)-A-x(3,5)-L-x(3)-G C 3: 14.2431 10( 9) G-D-x(4,5)-G-x(3)-[GNPS] D 4: 13.6599 11( 9) L-x(0,1)-L-x-[EGNQST]-x(2)-A E 5: 13.1594 13( 9) A-x(3,4)-A-x(2,3)-L-x(3)-[AGILPV] F 6: 13.1506 13( 9) D-x-L-x(1,3)-G-x(3)-[AEGNST] G 7: 12.5102 11( 9) G-x-N-D H 8: 12.0102 13( 9) L-x-L-x(3,4)-A I 9: 12.0102 12( 9) L-x(5)-Q-x(4,5)-L J 10: 12.0102 19( 9) L-x(2,3)-L-x(2)-L K 11: 12.0102 10( 9) S-x(2,3)-T-x(5)-A L 12: 12.0102 9( 9) S-x(1,2)-T-x(5)-A M 13: 12.0102 10( 9) S-x(2,3)-D-T N 14: 12.0102 11( 9) L-x(4)-S-x(1,2)-S O 15: 12.0102 12( 9) A-x(3)-L-x(2,3)-G P 16: 12.0102 13( 9) A-x(3,4)-L-x-L Q 17: 12.0102 11( 9) A-x-S-x(0,1)-A R 18: 11.5102 12( 9) F-x(3,4)-L-x(3,4)-L S 19: 11.5102 20( 9) A-x(3)-A-x(2,4)-L T 20: 11.5102 27( 9) A-x(2,3)-A-x(2,3)-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 18.4131 10( 9) G-D-S-x(3,4)-G-x(3)-[GNPS] Occurences: 10(9) APG_ARATH : 209- 220: avfff GDSvfdtGnnnN letki APG_BRANA : 130- 141: avfff GDSifdtGnnnN ldtkl ESTE_VIBMI : 27- 37: kllvl GDSlsa-GyqmP ieksw GCAT_AERHY : 32- 43: rivmf GDSlsdtGkmyS kmrgy HLT_VIBPA : 151- 162: kvval GDSlsdtGnifN asqwr LIP1_PHOLU : 32- 42: nlyvf GDSlsd-GgnnG rytvd PHLX_RABIT : 398- 408: vigam GDSlta-GngaG sqpgn PHLX_RABIT : 745- 755: vvaal GDSlta-GigiG skpnd TESA_ECOLI : 34- 44: tllil GDSlsa-GyrmS asaaw YTRP_PSEPU : 35- 46: gmivf GDSlsdaGqfgG vrftn B 2: 14.6802 16( 9) A-x(0,2)-A-x(3,5)-L-x(3)-G Occurences: 16(9) APG_ARATH : 379- 391: yttii AdsAasfv-LqlyG ygarr APG_ARATH : 382- 391: iiads A--Asfv--LqlyG ygarr APG_ARATH : 382- 393: iiads A--AsfvlqLygyG arrig APG_BRANA : 296- 308: fttmm AdsAasfv-LqlyG ygarr APG_BRANA : 299- 308: mmads A--Asfv--LqlyG ygarr APG_BRANA : 299- 310: mmads A--AsfvlqLygyG arrig ESTE_VIBMI : 16- 27: fclsa AsqAsek--LlvlG dslsa GCAT_AERHY : 290- 301: vaspm A--ArsastLnceG kmfwd HLT_VIBPA : 262- 275: vpevk AdyAealirLtdaG aknfm HLT_VIBPA : 265- 275: vkady Ae-Alir--LtdaG aknfm LIP1_PHOLU : 22- 32: saisn Ah-Aynn--LyvfG dslsd PHLX_RABIT : 664- 677: kahah AasAlwnnmLepvG qktth PHLX_RABIT : 665- 677: ahaha As-AlwnnmLepvG qktth PHLX_RABIT : 1360- 1372: ghaem Ai-AlwnnmLepvG hktts TESA_ECOLI : 24- 34: lltfr Aa-Aadt--LlilG dslsa TESA_ECOLI : 24- 34: lltfr A--Aaadt-LlilG dslsa TESA_ECOLI : 25- 34: ltfra A--Aadt--LlilG dslsa YTRP_PSEPU : 173- 186: aaaag ArlAasaqaLqqgG aryim YTRP_PSEPU : 176- 186: agarl A--Asaqa-LqqgG aryim C 3: 14.2431 10( 9) G-D-x(4,5)-G-x(3)-[GNPS] Occurences: 10(9) APG_ARATH : 209- 220: avfff GDsvfdtGnnnN letki APG_BRANA : 130- 141: avfff GDsifdtGnnnN ldtkl ESTE_VIBMI : 27- 37: kllvl GDslsa-GyqmP ieksw GCAT_AERHY : 32- 43: rivmf GDslsdtGkmyS kmrgy HLT_VIBPA : 151- 162: kvval GDslsdtGnifN asqwr LIP1_PHOLU : 32- 42: nlyvf GDslsd-GgnnG rytvd PHLX_RABIT : 398- 408: vigam GDslta-GngaG sqpgn PHLX_RABIT : 745- 755: vvaal GDslta-GigiG skpnd TESA_ECOLI : 34- 44: tllil GDslsa-GyrmS asaaw YTRP_PSEPU : 35- 46: gmivf GDslsdaGqfgG vrftn D 4: 13.6599 11( 9) L-x(0,1)-L-x-[EGNQST]-x(2)-A Occurences: 11(9) APG_ARATH : 387- 394: aasfv LqLyGygA rrigv APG_BRANA : 304- 311: aasfv LqLyGygA rrigv ESTE_VIBMI : 87- 94: qhtpd LvLiElgA ndglr GCAT_AERHY : 280- 286: iagnp L-LaQavA spmaa HLT_VIBPA : 13- 20: lltal LpLaSavA eeptl HLT_VIBPA : 108- 115: rceat LdLaNenA ditff LIP1_PHOLU : 280- 286: vdvna L-LhEviA nplry PHLX_RABIT : 13- 20: fllgl LpLlGrgA dqiqt PHLX_RABIT : 1429- 1435: aagag L-LiGilA mvagr TESA_ECOLI : 17- 24: lpflf LvLlTfrA aaadt YTRP_PSEPU : 243- 249: lnvpm L-LsEalA spsqf E 5: 13.1594 13( 9) A-x(3,4)-A-x(2,3)-L-x(3)-[AGILPV] Occurences: 13(9) APG_ARATH : 379- 391: yttii Adsa-AsfvLqlyG ygarr APG_BRANA : 296- 308: fttmm Adsa-AsfvLqlyG ygarr ESTE_VIBMI : 15- 27: ffcls Aasq-AsekLlvlG dslsa ESTE_VIBMI : 189- 200: aqpwi Aefv-Aqe-LvkhL GCAT_AERHY : 290- 301: vaspm Aars-Ast-LnceG kmfwd HLT_VIBPA : 262- 275: vpevk AdyaeAlirLtdaG aknfm LIP1_PHOLU : 153- 165: ssqvh Alln-AgagLvivP tvpdv PHLX_RABIT : 473- 484: fnqav Agar-Adg-LipqA qrlva PHLX_RABIT : 543- 556: ldilh AeiprAfvnLvkvL eiskl PHLX_RABIT : 1420- 1433: tvlyw AvpvaAgagLligI lamva TESA_ECOLI : 193- 204: aqpfi Adwm-Akq-LqplV nhds YTRP_PSEPU : 142- 154: anglr Adpn-AlyyLtggG ndflq YTRP_PSEPU : 166- 179: lvnsp AdaaaAgarLaasA qalqq F 6: 13.1506 13( 9) D-x-L-x(1,3)-G-x(3)-[AEGNST] Occurences: 13(9) APG_ARATH : 277- 285: kiqpn DlLt--GvsfA sggag APG_BRANA : 204- 212: elqqs DlLt--GvsfA sggag ESTE_VIBMI : 48- 58: psllp DaLlehGqdvT vings GCAT_AERHY : 33- 43: ivmfg DsLsdtGkmyS kmrgy GCAT_AERHY : 134- 143: wvgan DyLay-GwntE qdakr HLT_VIBPA : 152- 162: vvalg DsLsdtGnifN asqwr LIP1_PHOLU : 33- 42: lyvfg DsLsd-GgnnG rytvd PHLX_RABIT : 399- 408: igamg DsLta-GngaG sqpgn PHLX_RABIT : 746- 755: vaalg DsLta-GigiG skpnd TESA_ECOLI : 28- 38: raaaa DtLlilGdslS agyrm TESA_ECOLI : 35- 44: llilg DsLsa-GyrmS asaaw YTRP_PSEPU : 36- 46: mivfg DsLsdaGqfgG vrftn YTRP_PSEPU : 156- 164: tgggn DfLq--GlvnS padaa G 7: 12.5102 11( 9) G-x-N-D Occurences: 11(9) APG_ARATH : 351- 354: aivvg GsND liity APG_BRANA : 268- 271: aivva GsND liyty ESTE_VIBMI : 93- 96: vliel GaND glrgf GCAT_AERHY : 131- 134: vilwv GaND ylayg HLT_VIBPA : 246- 249: ftlef GlND fmnyn LIP1_PHOLU : 122- 125: yvhwi GgND vdaal PHLX_RABIT : 511- 514: itvfi GgND lcdfc PHLX_RABIT : 1209- 1212: vtlfv GgND lchfc TESA_ECOLI : 97- 100: vlvel GgND glrgf YTRP_PSEPU : 153- 156: yyltg GgND flqgl YTRP_PSEPU : 455- 458: rtfal GvND rsekg H 8: 12.0102 13( 9) L-x-L-x(3,4)-A Occurences: 13(9) APG_ARATH : 387- 394: aasfv LqLygygA rrigv APG_BRANA : 304- 311: aasfv LqLygygA rrigv ESTE_VIBMI : 87- 94: qhtpd LvLielgA ndglr GCAT_AERHY : 203- 210: hnqll LnLarqlA ptgmv HLT_VIBPA : 13- 20: lltal LpLasavA eeptl HLT_VIBPA : 108- 115: rceat LdLanenA ditff HLT_VIBPA : 195- 201: akakn LpLynw-A vggaa LIP1_PHOLU : 12- 18: fapgm LaLsis-A isnah PHLX_RABIT : 13- 20: fllgl LpLlgrgA dqiqt PHLX_RABIT : 1104- 1110: algds LtLamg-A rpsns TESA_ECOLI : 17- 24: lpflf LvLltfrA aaadt YTRP_PSEPU : 14- 21: ftlas LaLacsqA faaps YTRP_PSEPU : 320- 327: sapwe LtLlpemA htslr I 9: 12.0102 12( 9) L-x(5)-Q-x(4,5)-L Occurences: 12(9) APG_ARATH : 30- 42: fciff LtttnaQvmhrrL wpwpl APG_ARATH : 434- 445: lfnsk LllilgQlskt-L pnstf APG_BRANA : 351- 362: lfnsk LviilgQlskt-L pnsti ESTE_VIBMI : 76- 87: nglar LpqlldQhtpd-L vliel GCAT_AERHY : 217- 228: tgmvk LfeidkQfaem-L rdpqn HLT_VIBPA : 214- 225: nqyia LtgvgdQvssy-L tyakl LIP1_PHOLU : 253- 265: snask LvdnynQledmaL sqeng PHLX_RABIT : 293- 304: slsal LaepplQdptt-L alslw PHLX_RABIT : 733- 744: tsvha LrpadiQvvaa-L gdslt PHLX_RABIT : 787- 798: dnvtt LpnilrQfnsn-L mgfav TESA_ECOLI : 102- 114: ggndg LrgfqpQqteqtL rqilq YTRP_PSEPU : 216- 228: tplsl LsgvfnQsllsqL gqida J 10: 12.0102 19( 9) L-x(2,3)-L-x(2)-L Occurences: 19(9) APG_ARATH : 434- 441: lfnsk LlliLgqL sktlp APG_ARATH : 435- 441: fnskl Lli-LgqL sktlp APG_BRANA : 351- 358: lfnsk LviiLgqL sktlp ESTE_VIBMI : 73- 79: ttgng Lar-LpqL ldqht GCAT_AERHY : 8- 14: kwfvc Llg-LvaL tvqaa GCAT_AERHY : 169- 176: gakei LlfnLpdL gqnps GCAT_AERHY : 170- 176: akeil Lfn-LpdL gqnps HLT_VIBPA : 8- 15: kktit LltaLlpL asava HLT_VIBPA : 9- 15: ktitl Lta-LlpL asava LIP1_PHOLU : 371- 378: galas LdgrLqqL rnvdn PHLX_RABIT : 9- 15: wpsvf Llg-LlpL lgrga PHLX_RABIT : 9- 16: wpsvf LlglLplL grgad PHLX_RABIT : 10- 16: psvfl Lgl-LplL grgad PHLX_RABIT : 196- 203: ggmdk LtrtLdyL qqevp PHLX_RABIT : 214- 220: kafvn Lvd-LseL aafsr PHLX_RABIT : 881- 888: nfydh LrdaLdaL hrevp PHLX_RABIT : 941- 947: ensye Lar-LeaL aqayq PHLX_RABIT : 1299- 1306: kvnwn LqsgLsrL syshq TESA_ECOLI : 77- 83: tsqqg Lar-LpaL lkqhq YTRP_PSEPU : 7- 14: rkapl LrftLasL alacs K 11: 12.0102 10( 9) S-x(2,3)-T-x(5)-A Occurences: 10(9) APG_ARATH : 373- 382: kndid Syt-TiiadsA asfvl APG_BRANA : 290- 299: kndvd Sft-TmmadsA asfvl ESTE_VIBMI : 65- 74: ingsi Sgd-TtgnglA rlpql GCAT_AERHY : 257- 266: pfasr Sas-TdsqlsA fnpqe HLT_VIBPA : 127- 137: adnrf SynhTiwsndA amqpd HLT_VIBPA : 153- 163: valgd SlsdTgnifnA sqwrf LIP1_PHOLU : 340- 349: ahhiv Sqy-TvsvlnA pyrvm PHLX_RABIT : 1054- 1063: rtfrn Sdy-TypsrpA venwg TESA_ECOLI : 69- 78: vnasi Sgd-TsqqglA rlpal YTRP_PSEPU : 412- 421: agghd Sdy-TlnsylA safaq L 12: 12.0102 9( 9) S-x(1,2)-T-x(5)-A Occurences: 9(9) APG_ARATH : 373- 382: kndid SytTiiadsA asfvl APG_BRANA : 290- 299: kndvd SftTmmadsA asfvl ESTE_VIBMI : 65- 74: ingsi SgdTtgnglA rlpql GCAT_AERHY : 257- 266: pfasr SasTdsqlsA fnpqe HLT_VIBPA : 155- 163: lgdsl Sd-TgnifnA sqwrf LIP1_PHOLU : 340- 349: ahhiv SqyTvsvlnA pyrvm PHLX_RABIT : 1054- 1063: rtfrn SdyTypsrpA venwg TESA_ECOLI : 69- 78: vnasi SgdTsqqglA rlpal YTRP_PSEPU : 412- 421: agghd SdyTlnsylA safaq M 13: 12.0102 10( 9) S-x(2,3)-D-T Occurences: 10(9) APG_ARATH : 211- 215: fffgd Svf-DT gnnnn APG_BRANA : 132- 136: fffgd Sif-DT gnnnn ESTE_VIBMI : 63- 68: tving SisgDT tgngl GCAT_AERHY : 34- 38: vmfgd Sls-DT gkmys HLT_VIBPA : 153- 157: valgd Sls-DT gnifn LIP1_PHOLU : 595- 600: sfvse SqkqDT hwrey PHLX_RABIT : 614- 619: qqlid SgryDT rddft PHLX_RABIT : 961- 966: relve SgryDT redfs TESA_ECOLI : 67- 72: svvna SisgDT sqqgl YTRP_PSEPU : 460- 465: gvndr SekgDT dgeaw N 14: 12.0102 11( 9) L-x(4)-S-x(1,2)-S Occurences: 11(9) APG_ARATH : 6- 13: mkrss LvdscSy-S rifrs APG_ARATH : 278- 286: iqpnd LltgvSfaS ggagy APG_BRANA : 205- 213: lqqsd LltgvSfaS ggagy ESTE_VIBMI : 9- 17: llslv LffclSaaS qasek ESTE_VIBMI : 24- 31: asekl LvlgdSl-S agyqm GCAT_AERHY : 176- 184: fnlpd LgqnpSarS qkvve HLT_VIBPA : 358- 365: asdpc LdinrSs-S vdymy LIP1_PHOLU : 12- 20: fapgm LalsiSaiS nahay PHLX_RABIT : 1299- 1307: kvnwn LqsglSrlS yshqy TESA_ECOLI : 31- 38: aadtl LilgdSl-S agyrm YTRP_PSEPU : 107- 114: ttqqi LdsitSt-S etvip O 15: 12.0102 12( 9) A-x(3)-L-x(2,3)-G Occurences: 12(9) APG_ARATH : 383- 391: iadsa AsfvLqlyG ygarr APG_BRANA : 300- 308: madsa AsfvLqlyG ygarr APG_BRANA : 418- 426: knmsn AssyLfwdG lhpsq ESTE_VIBMI : 19- 27: saasq AsekLlvlG dslsa GCAT_AERHY : 132- 139: ilwvg AndyLay-G wnteq HLT_VIBPA : 267- 275: adyae AlirLtdaG aknfm LIP1_PHOLU : 24- 32: isnah AynnLyvfG dslsd PHLX_RABIT : 1425- 1432: avpva AgagLli-G ilamv TESA_ECOLI : 26- 34: tfraa AadtLlilG dslsa TESA_ECOLI : 27- 34: fraaa AdtlLil-G dslsa YTRP_PSEPU : 146- 153: radpn AlyyLtg-G gndfl YTRP_PSEPU : 146- 154: radpn AlyyLtggG ndflq YTRP_PSEPU : 434- 441: qdrww AdaaLta-G hldys P 16: 12.0102 13( 9) A-x(3,4)-L-x-L Occurences: 13(9) APG_ARATH : 382- 389: iiads AasfvLqL ygyga APG_ARATH : 383- 389: iadsa Asfv-LqL ygyga APG_BRANA : 299- 306: mmads AasfvLqL ygyga APG_BRANA : 300- 306: madsa Asfv-LqL ygyga ESTE_VIBMI : 19- 26: saasq AseklLvL gdsls GCAT_AERHY : 196- 203: ashvs AyhnqLlL nlarq HLT_VIBPA : 190- 197: wteyi AkaknLpL ynwav LIP1_PHOLU : 8- 14: rsfif Apgm-LaL sisai PHLX_RABIT : 183- 190: fpcps AqqkgLvL ggmdk PHLX_RABIT : 1099- 1106: ikvva AlgdsLtL amgar TESA_ECOLI : 26- 33: tfraa AadtlLiL gdsls TESA_ECOLI : 27- 33: fraaa Adtl-LiL gdsls YTRP_PSEPU : 316- 322: ysils Apwe-LtL lpema Q 17: 12.0102 11( 9) A-x-S-x(0,1)-A Occurences: 11(9) APG_ARATH : 379- 382: yttii AdS-A asfvl APG_ARATH : 379- 383: yttii AdSaA sfvlq APG_BRANA : 296- 299: fttmm AdS-A asfvl APG_BRANA : 296- 300: fttmm AdSaA sfvlq ESTE_VIBMI : 15- 19: ffcls AaSqA sekll GCAT_AERHY : 152- 156: krvrd AiSdA anrmv GCAT_AERHY : 291- 294: aspma ArS-A stlnc HLT_VIBPA : 379- 383: lrsec AaSgA ekfvf LIP1_PHOLU : 18- 22: alsis AiSnA haynn PHLX_RABIT : 664- 667: kahah AaS-A lwnnm TESA_ECOLI : 146- 149: rryne AfS-A iypkl YTRP_PSEPU : 17- 21: aslal AcSqA faaps YTRP_PSEPU : 176- 179: agarl AaS-A qalqq R 18: 11.5102 12( 9) F-x(3,4)-L-x(3,4)-L Occurences: 12(9) APG_ARATH : 430- 438: yasql Fnsk-Llli-L gqlsk APG_BRANA : 347- 355: yaaql Fnsk-Lvii-L gqlsk ESTE_VIBMI : 191- 200: pwiae FvaqeLvkh-L GCAT_AERHY : 5- 14: mkkw Fvcl-LglvaL tvqaa HLT_VIBPA : 332- 341: ynitl FdthaLfet-L tsape LIP1_PHOLU : 60- 69: klynd FiaqqLgie-L vnskk PHLX_RABIT : 8- 16: lwpsv Fllg-Llpl-L grgad PHLX_RABIT : 284- 293: vfqpf FyessLsal-L aeppl PHLX_RABIT : 877- 885: ysaan Fydh-Lrda-L dalhr PHLX_RABIT : 1007- 1015: hpnqk Fhsq-Lsra-L wrnml TESA_ECOLI : 8- 17: nfnnv Frwh-LpflfL vlltf YTRP_PSEPU : 220- 228: llsgv Fnqs-Llsq-L gqida S 19: 11.5102 20( 9) A-x(3)-A-x(2,4)-L Occurences: 20(9) APG_ARATH : 379- 387: yttii AdsaAsfv-L qlygy APG_BRANA : 212- 219: tgvsf AsggAgy--L pqtse APG_BRANA : 263- 272: vskga AivvAgsndL iytyf APG_BRANA : 296- 304: fttmm AdsaAsfv-L qlygy ESTE_VIBMI : 15- 23: ffcls AasqAsek-L lvlgd ESTE_VIBMI : 15- 24: ffcls AasqAseklL vlgds ESTE_VIBMI : 189- 196: aqpwi AefvAqe--L vkhl GCAT_AERHY : 290- 297: vaspm AarsAst--L ncegk HLT_VIBPA : 16- 25: allpl AsavAeeptL spemv LIP1_PHOLU : 153- 161: ssqvh AllnAgag-L vivpt PHLX_RABIT : 471- 480: affnq AvagAradgL ipqaq PHLX_RABIT : 473- 480: fnqav AgarAdg--L ipqaq PHLX_RABIT : 660- 668: hfssk AhahAasa-L wnnml PHLX_RABIT : 818- 827: affnq AvpgAkardL msqvq PHLX_RABIT : 946- 955: larle AlaqAyqssL relve PHLX_RABIT : 1420- 1429: tvlyw AvpvAagagL ligil TESA_ECOLI : 193- 200: aqpfi AdwmAkq--L qplvn YTRP_PSEPU : 142- 150: anglr AdpnAlyy-L tgggn YTRP_PSEPU : 166- 175: lvnsp AdaaAagarL aasaq YTRP_PSEPU : 173- 182: aaaag ArlaAsaqaL qqgga YTRP_PSEPU : 436- 443: rwwad AaltAgh--L dysdl T 20: 11.5102 27( 9) A-x(2,3)-A-x(2,3)-L Occurences: 27(9) APG_ARATH : 298- 305: pttse Aan-AipmL dqlty APG_ARATH : 379- 387: yttii AdsaAsfvL qlygy APG_BRANA : 212- 219: tgvsf AsggAgy-L pqtse APG_BRANA : 296- 304: fttmm AdsaAsfvL qlygy ESTE_VIBMI : 15- 23: ffcls AasqAsekL lvlgd ESTE_VIBMI : 16- 23: fclsa Asq-AsekL lvlgd ESTE_VIBMI : 189- 196: aqpwi AefvAqe-L vkhl GCAT_AERHY : 290- 297: vaspm AarsAst-L ncegk GCAT_AERHY : 291- 297: aspma Ars-Ast-L ncegk HLT_VIBPA : 262- 268: vpevk Ady-Aea-L irltd LIP1_PHOLU : 153- 161: ssqvh AllnAgagL vivpt PHLX_RABIT : 291- 298: essls All-AeppL qdptt PHLX_RABIT : 473- 480: fnqav AgarAdg-L ipqaq PHLX_RABIT : 660- 668: hfssk AhahAasaL wnnml PHLX_RABIT : 662- 668: sskah Aha-Asa-L wnnml PHLX_RABIT : 1357- 1363: sergh Aem-Aia-L wnnml PHLX_RABIT : 1424- 1430: wavpv Aag-Agl-L igila TESA_ECOLI : 24- 30: lltfr Aaa-Adt-L lilgd TESA_ECOLI : 24- 31: lltfr Aaa-AdtlL ilgds TESA_ECOLI : 45- 52: gyrms Asa-AwpaL lndkw TESA_ECOLI : 123- 129: lqdvk Aan-Aep-L lmqir TESA_ECOLI : 123- 130: lqdvk Aan-AeplL mqirl TESA_ECOLI : 193- 200: aqpfi AdwmAkq-L qplvn YTRP_PSEPU : 142- 150: anglr AdpnAlyyL tgggn YTRP_PSEPU : 168- 175: nspad Aaa-AgarL aasaq YTRP_PSEPU : 176- 182: agarl Aas-Aqa-L qqgga YTRP_PSEPU : 307- 314: gqqli Ady-AysiL sapwe YTRP_PSEPU : 436- 443: rwwad AaltAgh-L dysdl YTRP_PSEPU : 437- 443: wwada Alt-Agh-L dysdl Number of patterns evaluated by Pratt:2869 Total running time: 3 seconds