------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 4 sequences from file LIF_OSM PATTERN CONSERVATION: CM: min Nr of Seqs to Match 4 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename LIF_OSM.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: LIF_HUMAN 202 LIF_MOUSE 203 LIF_RAT 202 ONCM_HUMAN 252 Pratt run started at Thu Feb 6 20:10:41 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 35.5305 4( 4) P-x(4)-L-x-N-x-I-x(2,4)-Q-L-x(0,2)-L-x(2)-S-x(2)-A 2: 33.3604 4( 4) K-x-G-x-G-x(3)-P-x-T-P-x(2)-A-x(2)-A 3: 32.8604 4( 4) K-x-G-x(0,1)-G-x(3)-P-x-T-P-x(2)-A-x(2)-A 4: 32.8604 4( 4) L-x(3)-L-x(4)-D-x(2)-R-x(0,1)-G-L-x(4)-L-x(2)-L 5: 31.8604 4( 4) L-x(3)-N-x-T-x(5)-H-x(4,5)-E-x(2,4)-K-x(3)-L-x-R 6: 31.8604 4( 4) G-x(3)-P-x-T-P-x(2)-A-x(2)-A-x(1,2)-R-x(2,4)-C 7: 31.8604 4( 4) A-G-x(3,5)-P-x-T-P-x(2)-A-x(2)-A-x(1,2)-R 8: 31.8604 4( 4) G-x(5)-P-x-T-P-x(2)-A-x(2)-A-x(1,2)-R-x(2,4)-C 9: 31.3604 4( 4) L-x-N-x-I-x(2,4)-Q-L-x(0,2)-L-x(2)-S-x(2)-A 10: 29.1904 4( 4) R-x-L-L-S-x-V-L-x(2)-L 11: 28.6904 4( 4) L-x(4)-D-x(2)-R-x(0,1)-G-L-x(4)-L-x(2)-L 12: 28.1904 4( 4) Q-x-K-x(0,1)-L-x(0,1)-G-C-x(2)-L-x(2)-Y 13: 28.1904 4( 4) F-x(2)-K-x(0,1)-L-x(0,1)-G-C-x(2)-L-x(2)-Y 14: 28.1904 4( 4) A-x(1,2)-D-x(2)-R-x(0,1)-G-L-x(4)-L-x(2)-L 15: 28.1904 4( 4) S-x(1,2)-P-x-T-P-x(2)-A-x(2)-A-x(1,2)-R 16: 27.6904 5( 4) A-x(0,2)-D-x(2)-R-x(0,1)-G-L-x(4)-L-x(2)-L 17: 27.6904 4( 4) D-x(0,2)-P-x(4,5)-G-x(4)-K-L-x-E-x(2)-R 18: 27.6904 4( 4) N-x-T-x(5)-H-x(4,5)-E-x(2,4)-K-x(3)-L-x-R 19: 27.6904 4( 4) N-x(4)-A-x(0,1)-L-x(5)-T-A-x(0,2)-E-P 20: 27.6904 4( 4) R-x(0,1)-P-x(4)-L-x-N-x-I-x(2,4)-Q-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 111.5506 4( 4) K-x-G-x-G-[AS]-[PS]-x-P-[IP]-T-P-[TV]-[NP]-A-[ST]-[CD]-A-[FI]-[QR]-[HR]-x(2)-[EH]-[GN]-[CN]-x-[FM]-x(2)-[GI]-x(2)-[QR]-[FL]-x(3)-[NV]-G-[RS]-[AV]-x-[AS]-x-[FW]-[GI] B 2: 111.0506 4( 4) K-x-G-x(0,1)-G-[AS]-[PS]-x-P-[IP]-T-P-[TV]-[NP]-A-[ST]-[CD]-A-[FI]-[QR]-[HR]-x(2)-[EH]-[GN]-[CN]-x-[FM]-x(2)-[GI]-x(2)-[QR]-[FL]-x(3)-[NV]-G-[RS]-[AV]-x-[AS]-x-[FW]-[GI] C 3: 103.3310 4( 4) R-x(0,1)-P-[CN]-x(2)-[GN]-L-x-N-[NQ]-I-x(2,4)-Q-L-[AL]-[DQ]-x-[NS]-[DG]-[ST]-A-[EN]-[AP]-x(2)-[AI]-x(3)-[AT]-[AS]-Q-[GP]-[EP]-[PT]-x-[PT]-[NP]-[AN]-x-[DE]-x-[FL] D 4: 98.6611 4( 4) N-[GI]-x-[AC]-x-A-x(0,1)-L-[FL]-x(4)-T-A-x(0,2)-E-P-x(2)-[AN]-[GN]-x-[DEG]-x(3)-[AGP]-P-[NT]-x-T-[DP]-x-[PS]-[DPS]-x-[FH]-[AGQ]-[NR]-x(2)-E-x-[ACT]-[KR]-[FL]-[LV]-[EH] E 5: 95.2710 4( 4) A-G-x(3,5)-P-[IP]-T-P-[TV]-[NP]-A-[ST]-[CD]-A-x(1,2)-R-[HK]-[LP]-x(2)-[CGN]-[NR]-[FL]-[LM]-x-[GQ]-x-[HKR]-[NRS]-x-[LM]-x-[QS]-[LV]-[GN]-x-[SV]-x-[NS] F 6: 91.6009 4( 4) S-x(1,2)-P-[IP]-T-P-[TV]-[NP]-A-[ST]-[CD]-A-x(1,2)-R-[HK]-[LP]-x(2)-[CGN]-[NR]-[FL]-[LM]-x-[GQ]-x-[HKR]-[NRS]-x-[LM]-x-[QS]-[LV]-[GN]-x-[SV]-x-[NS] G 7: 83.0849 4( 4) D-x(0,2)-P-x(4,5)-G-x-[DE]-x-[APT]-K-L-x-E-x(2)-R-x(2)-[APTV]-x-[AL]-x-[APT]-S-x-[EGT]-[NT]-[IL]-x(3)-[GQ]-[KR]-x-[GL]-x-[LP]-[QST]-[AT]-[LV]-[NS]-[AL] H 8: 74.8747 4( 4) R-[GT]-L-L-S-x-V-L-[AC]-x-L-x-[NPS]-x(3)-[SV]-x(2)-[AV]-x-[GV]-[PST]-x-[GSV]-x-[DE]-x-[RS]-[DGSV]-x(2)-[AGV]-x(3)-K-x(2)-[DG]-x(4)-[GT] I 9: 73.9348 4( 4) F-Q-[KR]-K-x(0,1)-L-x(0,1)-G-C-[QR]-[FL]-L-x(2)-Y-[HK]-[QR]-[FIV]-[IM]-x-[SV]-[LV]-[AGV]-[QR]-[AV]-F J 10: 69.7647 4( 4) Q-[KR]-K-x(0,1)-L-x(0,1)-G-C-[QR]-[FL]-L-x(2)-Y-[HK]-[QR]-[FIV]-[IM]-x-[SV]-[LV]-[AGV]-[QR]-[AV]-F K 11: 62.2282 4( 4) L-x-[AGT]-[LP]-N-x-T-x(2)-[CP]-x-[FL]-H-x(4,5)-E-x(2,4)-K-[AL]-x-[DE]-L-x-R-x-[GV]-x(2)-[IL]-[EGS]-[ADT] L 12: 61.4792 4( 4) G-x-G-[AS]-[PS]-x-P-[IP]-T-P-[TV]-[NP]-A-[ST]-[CD]-A-x(1,2)-R-x(2,4)-C-[HR] M 13: 58.0282 4( 4) P-[CN]-x(2)-[GN]-L-x-N-[NQ]-I-x(2,4)-Q-L-x(0,2)-L-[DN]-[GN]-S-[AD]-[NT]-A N 14: 57.3091 4( 4) G-[AS]-[PS]-x-P-[IP]-T-P-[TV]-[NP]-A-[ST]-[CD]-A-x(1,2)-R-x(2,4)-C-[HR] O 15: 52.2318 4( 4) N-x-T-x(2)-[CP]-x-[FL]-H-x(4,5)-E-x(2,4)-K-[AL]-x-[DE]-L-x-R-x-[GV]-x(2)-[IL]-[EGS]-[ADT] P 16: 50.9584 4( 4) L-x(3)-L-[NP]-x-[AT]-x-D-[ILV]-x-R-x(0,1)-G-L-x(2)-[ENS]-[DV]-L-x-[KR]-L Q 17: 47.4086 4( 4) L-x-N-[NQ]-I-x(2,4)-Q-L-x(0,2)-L-[DN]-[GN]-S-[AD]-[NT]-A R 18: 46.7883 4( 4) L-[NP]-x-[AT]-x-D-[ILV]-x-R-x(0,1)-G-L-x(2)-[ENS]-[DV]-L-x-[KR]-L S 19: 39.9111 4( 4) A-x(1,2)-D-[ILV]-x-R-x(0,1)-G-L-x(2)-[ENS]-[DV]-L-x-[KR]-L T 20: 39.4111 5( 4) A-x(0,2)-D-[ILV]-x-R-x(0,1)-G-L-x(2)-[ENS]-[DV]-L-x-[KR]-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 111.5506 4( 4) K-x-G-x-G-[AS]-[PS]-x-P-[IP]-T-P-[TV]-[NP]-A-[ST]-[CD]-A-[FI]-[QR]-[HR]-x(2)-[EH]-[GN]-[CN]-x-[FM]-x(2)-[GI]-x(2)-[QR]-[FL]-x(3)-[NV]-G-[RS]-[AV]-x-[AS]-x-[FW]-[GI] Occurences: 4(4) LIF_HUMAN : 18- 64: lvlhw KhGaGSPlPITPVNATCAIRHpcHNNlMnqIrsQLaqlNGSAnAlFI lyyta LIF_MOUSE : 19- 65: lvlhw KhGaGSPlPITPVNATCAIRHpcHGNlMnqIknQLaqlNGSAnAlFI syyta LIF_RAT : 18- 64: lilhw KhGaGSPlPITPVNATCAIRHpcHGNlMnqIksQLaqlNGSAnAlFI syyta ONCM_HUMAN : 167- 213: taept KaGrGASqPPTPTPASDAFQRklEGCrFlhGyhRFmhsVGRVfSkWG espnr B 2: 111.0506 4( 4) K-x-G-x(0,1)-G-[AS]-[PS]-x-P-[IP]-T-P-[TV]-[NP]-A-[ST]-[CD]-A-[FI]-[QR]-[HR]-x(2)-[EH]-[GN]-[CN]-x-[FM]-x(2)-[GI]-x(2)-[QR]-[FL]-x(3)-[NV]-G-[RS]-[AV]-x-[AS]-x-[FW]-[GI] Occurences: 4(4) LIF_HUMAN : 18- 64: lvlhw KhGaGSPlPITPVNATCAIRHpcHNNlMnqIrsQLaqlNGSAnAlFI lyyta LIF_MOUSE : 19- 65: lvlhw KhGaGSPlPITPVNATCAIRHpcHGNlMnqIknQLaqlNGSAnAlFI syyta LIF_RAT : 18- 64: lilhw KhGaGSPlPITPVNATCAIRHpcHGNlMnqIksQLaqlNGSAnAlFI syyta ONCM_HUMAN : 167- 213: taept KaGrGASqPPTPTPASDAFQRklEGCrFlhGyhRFmhsVGRVfSkWG espnr C 3: 103.3310 4( 4) R-x(0,1)-P-[CN]-x(2)-[GN]-L-x-N-[NQ]-I-x(2,4)-Q-L-[AL]-[DQ]-x-[NS]-[DG]-[ST]-A-[EN]-[AP]-x(2)-[AI]-x(3)-[AT]-[AS]-Q-[GP]-[EP]-[PT]-x-[PT]-[NP]-[AN]-x-[DE]-x-[FL] Occurences: 4(4) LIF_HUMAN : 37- 81: atcai RhPChnNLmNQIrs--QLAQlNGSANAlfIlyyTAQGEPfPNNlDkL cgpnv LIF_MOUSE : 38- 82: atcai RhPChgNLmNQIkn--QLAQlNGSANAlfIsyyTAQGEPfPNNvEkL capnm LIF_RAT : 37- 81: atcai RhPChgNLmNQIks--QLAQlNGSANAlfIsyyTAQGEPfPNNvDkL capnm ONCM_HUMAN : 140- 185: klqma R-PNilGLrNNIycmaQLLDnSDTAEPtkAgrgASQPPTpTPAsDaF qrkle D 4: 98.6611 4( 4) N-[GI]-x-[AC]-x-A-x(0,1)-L-[FL]-x(4)-T-A-x(0,2)-E-P-x(2)-[AN]-[GN]-x-[DEG]-x(3)-[AGP]-P-[NT]-x-T-[DP]-x-[PS]-[DPS]-x-[FH]-[AGQ]-[NR]-x(2)-E-x-[ACT]-[KR]-[FL]-[LV]-[EH] Occurences: 4(4) LIF_HUMAN : 56- 104: qlaql NGsAnA-LFilyyTAqgEPfpNNlDklcGPNvTDfPPfHANgtEkAKLVE lyriv LIF_MOUSE : 57- 105: qlaql NGsAnA-LFisyyTAqgEPfpNNvEklcAPNmTDfPSfHGNgtEkTKLVE lyrmv LIF_RAT : 56- 104: qlaql NGsAnA-LFisyyTAqgEPfpNNvDklcAPNmTDfPPfHANgtEkTKLVE lyrmv ONCM_HUMAN : 149- 196: lglrn NIyCmAqLLdnsdTA--EPtkAGrGasqPPTpTPaSDaFQRklEgCRFLH gyhrf E 5: 95.2710 4( 4) A-G-x(3,5)-P-[IP]-T-P-[TV]-[NP]-A-[ST]-[CD]-A-x(1,2)-R-[HK]-[LP]-x(2)-[CGN]-[NR]-[FL]-[LM]-x-[GQ]-x-[HKR]-[NRS]-x-[LM]-x-[QS]-[LV]-[GN]-x-[SV]-x-[NS] Occurences: 4(4) LIF_HUMAN : 21- 60: hwkhg AGspl--PITPVNATCAi-RHPchNNLMnQiRSqLaQLNgSaN alfil LIF_MOUSE : 22- 61: hwkhg AGspl--PITPVNATCAi-RHPchGNLMnQiKNqLaQLNgSaN alfis LIF_RAT : 21- 60: hwkhg AGspl--PITPVNATCAi-RHPchGNLMnQiKSqLaQLNgSaN alfis ONCM_HUMAN : 168- 210: aeptk AGrgasqPPTPTPASDAfqRKLegCRFLhGyHRfMhSVGrVfS kwges F 6: 91.6009 4( 4) S-x(1,2)-P-[IP]-T-P-[TV]-[NP]-A-[ST]-[CD]-A-x(1,2)-R-[HK]-[LP]-x(2)-[CGN]-[NR]-[FL]-[LM]-x-[GQ]-x-[HKR]-[NRS]-x-[LM]-x-[QS]-[LV]-[GN]-x-[SV]-x-[NS] Occurences: 4(4) LIF_HUMAN : 23- 60: khgag SplPITPVNATCAi-RHPchNNLMnQiRSqLaQLNgSaN alfil LIF_MOUSE : 24- 61: khgag SplPITPVNATCAi-RHPchGNLMnQiKNqLaQLNgSaN alfis LIF_RAT : 23- 60: khgag SplPITPVNATCAi-RHPchGNLMnQiKSqLaQLNgSaN alfis ONCM_HUMAN : 173- 210: agrga Sq-PPTPTPASDAfqRKLegCRFLhGyHRfMhSVGrVfS kwges G 7: 83.0849 4( 4) D-x(0,2)-P-x(4,5)-G-x-[DE]-x-[APT]-K-L-x-E-x(2)-R-x(2)-[APTV]-x-[AL]-x-[APT]-S-x-[EGT]-[NT]-[IL]-x(3)-[GQ]-[KR]-x-[GL]-x-[LP]-[QST]-[AT]-[LV]-[NS]-[AL] Occurences: 4(4) LIF_HUMAN : 88- 133: gpnvt DfpPfhan-GtEkAKLvElyRivVyLgTSlGNItrdQKiLnPSALSL hskln LIF_HUMAN : 88- 133: gpnvt Df-PpfhanGtEkAKLvElyRivVyLgTSlGNItrdQKiLnPSALSL hskln LIF_MOUSE : 89- 134: apnmt Df-PsfhgnGtEkTKLvElyRmvAyLsASlTNItrdQKvLnPTAVSL qvkln LIF_RAT : 88- 133: apnmt DfpPfhan-GtEkTKLvElyRmvTyLgASlTNItwdQKnLnPTAVSL qikln LIF_RAT : 88- 133: apnmt Df-PpfhanGtEkTKLvElyRmvTyLgASlTNItwdQKnLnPTAVSL qikln ONCM_HUMAN : 57- 101: tsrll D--PyiriqGlDvPKLrEhcRerPgAfPSeETLrglGRrGfLQTLNA tlgcv H 8: 74.8747 4( 4) R-[GT]-L-L-S-x-V-L-[AC]-x-L-x-[NPS]-x(3)-[SV]-x(2)-[AV]-x-[GV]-[PST]-x-[GSV]-x-[DE]-x-[RS]-[DGSV]-x(2)-[AGV]-x(3)-K-x(2)-[DG]-x(4)-[GT] Occurences: 4(4) LIF_HUMAN : 145- 189: tadil RGLLSnVLCrLcSkyhVghVdVTyGpDtSGkdVfqkKklGcqllG kykqi LIF_MOUSE : 146- 190: tidvm RGLLSnVLCrLcNkyrVghVdVPpVpDhSDkeAfqrKklGcqllG tykqv LIF_RAT : 145- 189: ttdvm RGLLSsVLCrLcNkyhVghVdVPcVpDnSSkeAfqrKklGcqllG tykqv ONCM_HUMAN : 8- 52: vlltq RTLLSlVLAlLfPsmaSmaAiGScSkEyRVllGqlqKqtDlmqdT srlld I 9: 73.9348 4( 4) F-Q-[KR]-K-x(0,1)-L-x(0,1)-G-C-[QR]-[FL]-L-x(2)-Y-[HK]-[QR]-[FIV]-[IM]-x-[SV]-[LV]-[AGV]-[QR]-[AV]-F Occurences: 4(4) LIF_HUMAN : 178- 202: sgkdv FQKKkL-GCQLLgkYKQIIaVLAQAF LIF_MOUSE : 179- 203: sdkea FQRKkL-GCQLLgtYKQVIsVVVQAF LIF_RAT : 178- 202: sskea FQRKkL-GCQLLgtYKQVIsVLAQAF ONCM_HUMAN : 185- 209: pasda FQRK-LeGCRFLhgYHRFMhSVGRVF skwge J 10: 69.7647 4( 4) Q-[KR]-K-x(0,1)-L-x(0,1)-G-C-[QR]-[FL]-L-x(2)-Y-[HK]-[QR]-[FIV]-[IM]-x-[SV]-[LV]-[AGV]-[QR]-[AV]-F Occurences: 4(4) LIF_HUMAN : 179- 202: gkdvf QKKkL-GCQLLgkYKQIIaVLAQAF LIF_MOUSE : 180- 203: dkeaf QRKkL-GCQLLgtYKQVIsVVVQAF LIF_RAT : 179- 202: skeaf QRKkL-GCQLLgtYKQVIsVLAQAF ONCM_HUMAN : 186- 209: asdaf QRK-LeGCRFLhgYHRFMhSVGRVF skwge K 11: 62.2282 4( 4) L-x-[AGT]-[LP]-N-x-T-x(2)-[CP]-x-[FL]-H-x(4,5)-E-x(2,4)-K-[AL]-x-[DE]-L-x-R-x-[GV]-x(2)-[IL]-[EGS]-[ADT] Occurences: 4(4) LIF_HUMAN : 81- 114: nnldk LcGPNvTdfPpFHangt-Eka--KLvELyRiVvyLGT slgni LIF_MOUSE : 82- 115: nnvek LcAPNmTdfPsFHgngt-Ekt--KLvELyRmVayLSA sltni LIF_RAT : 81- 114: nnvdk LcAPNmTdfPpFHangt-Ekt--KLvELyRmVtyLGA sltni ONCM_HUMAN : 96- 132: grrgf LqTLNaTlgCvLHrladlEqrlpKAqDLeRsGlnIED leklq L 12: 61.4792 4( 4) G-x-G-[AS]-[PS]-x-P-[IP]-T-P-[TV]-[NP]-A-[ST]-[CD]-A-x(1,2)-R-x(2,4)-C-[HR] Occurences: 4(4) LIF_HUMAN : 20- 41: lhwkh GaGSPlPITPVNATCAi-Rhp--CH nnlmn LIF_MOUSE : 21- 42: lhwkh GaGSPlPITPVNATCAi-Rhp--CH gnlmn LIF_RAT : 20- 41: lhwkh GaGSPlPITPVNATCAi-Rhp--CH gnlmn ONCM_HUMAN : 169- 193: eptka GrGASqPPTPTPASDAfqRklegCR flhgy M 13: 58.0282 4( 4) P-[CN]-x(2)-[GN]-L-x-N-[NQ]-I-x(2,4)-Q-L-x(0,2)-L-[DN]-[GN]-S-[AD]-[NT]-A Occurences: 4(4) LIF_HUMAN : 39- 61: cairh PChnNLmNQIrs--QLaqLNGSANA lfily LIF_MOUSE : 40- 62: cairh PChgNLmNQIkn--QLaqLNGSANA lfisy LIF_RAT : 39- 61: cairh PChgNLmNQIks--QLaqLNGSANA lfisy ONCM_HUMAN : 141- 163: lqmar PNilGLrNNIycmaQL--LDNSDTA eptka N 14: 57.3091 4( 4) G-[AS]-[PS]-x-P-[IP]-T-P-[TV]-[NP]-A-[ST]-[CD]-A-x(1,2)-R-x(2,4)-C-[HR] Occurences: 4(4) LIF_HUMAN : 22- 41: wkhga GSPlPITPVNATCAi-Rhp--CH nnlmn LIF_MOUSE : 23- 42: wkhga GSPlPITPVNATCAi-Rhp--CH gnlmn LIF_RAT : 22- 41: wkhga GSPlPITPVNATCAi-Rhp--CH gnlmn ONCM_HUMAN : 171- 193: tkagr GASqPPTPTPASDAfqRklegCR flhgy O 15: 52.2318 4( 4) N-x-T-x(2)-[CP]-x-[FL]-H-x(4,5)-E-x(2,4)-K-[AL]-x-[DE]-L-x-R-x-[GV]-x(2)-[IL]-[EGS]-[ADT] Occurences: 4(4) LIF_HUMAN : 85- 114: klcgp NvTdfPpFHangt-Eka--KLvELyRiVvyLGT slgni LIF_MOUSE : 86- 115: klcap NmTdfPsFHgngt-Ekt--KLvELyRmVayLSA sltni LIF_RAT : 85- 114: klcap NmTdfPpFHangt-Ekt--KLvELyRmVtyLGA sltni ONCM_HUMAN : 100- 132: flqtl NaTlgCvLHrladlEqrlpKAqDLeRsGlnIED leklq P 16: 50.9584 4( 4) L-x(3)-L-[NP]-x-[AT]-x-D-[ILV]-x-R-x(0,1)-G-L-x(2)-[ENS]-[DV]-L-x-[KR]-L Occurences: 4(4) LIF_HUMAN : 133- 155: psals LhskLNaTaDIlR-GLlsNVLcRL cskyh LIF_MOUSE : 134- 156: ptavs LqvkLNaTiDVmR-GLlsNVLcRL cnkyr LIF_RAT : 133- 155: ptavs LqikLNaTtDVmR-GLlsSVLcRL cnkyh ONCM_HUMAN : 113- 136: hrlad LeqrLPkAqDLeRsGLniEDLeKL qmarp Q 17: 47.4086 4( 4) L-x-N-[NQ]-I-x(2,4)-Q-L-x(0,2)-L-[DN]-[GN]-S-[AD]-[NT]-A Occurences: 4(4) LIF_HUMAN : 44- 61: pchnn LmNQIrs--QLaqLNGSANA lfily LIF_MOUSE : 45- 62: pchgn LmNQIkn--QLaqLNGSANA lfisy LIF_RAT : 44- 61: pchgn LmNQIks--QLaqLNGSANA lfisy ONCM_HUMAN : 146- 163: pnilg LrNNIycmaQL--LDNSDTA eptka R 18: 46.7883 4( 4) L-[NP]-x-[AT]-x-D-[ILV]-x-R-x(0,1)-G-L-x(2)-[ENS]-[DV]-L-x-[KR]-L Occurences: 4(4) LIF_HUMAN : 137- 155: slhsk LNaTaDIlR-GLlsNVLcRL cskyh LIF_MOUSE : 138- 156: slqvk LNaTiDVmR-GLlsNVLcRL cnkyr LIF_RAT : 137- 155: slqik LNaTtDVmR-GLlsSVLcRL cnkyh ONCM_HUMAN : 117- 136: dleqr LPkAqDLeRsGLniEDLeKL qmarp S 19: 39.9111 4( 4) A-x(1,2)-D-[ILV]-x-R-x(0,1)-G-L-x(2)-[ENS]-[DV]-L-x-[KR]-L Occurences: 4(4) LIF_HUMAN : 139- 155: hskln AtaDIlR-GLlsNVLcRL cskyh LIF_MOUSE : 140- 156: qvkln AtiDVmR-GLlsNVLcRL cnkyr LIF_RAT : 139- 155: qikln AttDVmR-GLlsSVLcRL cnkyh ONCM_HUMAN : 120- 136: qrlpk Aq-DLeRsGLniEDLeKL qmarp T 20: 39.4111 5( 4) A-x(0,2)-D-[ILV]-x-R-x(0,1)-G-L-x(2)-[ENS]-[DV]-L-x-[KR]-L Occurences: 5(4) LIF_HUMAN : 139- 155: hskln AtaDIlR-GLlsNVLcRL cskyh LIF_HUMAN : 141- 155: klnat A--DIlR-GLlsNVLcRL cskyh LIF_MOUSE : 140- 156: qvkln AtiDVmR-GLlsNVLcRL cnkyr LIF_RAT : 139- 155: qikln AttDVmR-GLlsSVLcRL cnkyh ONCM_HUMAN : 120- 136: qrlpk Aq-DLeRsGLniEDLeKL qmarp Number of patterns evaluated by Pratt:7128 Total running time: 1 seconds