------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 7 sequences from file LBP_BPI_CETP PATTERN CONSERVATION: CM: min Nr of Seqs to Match 7 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename LBP_BPI_CETP.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: BPI_BOVIN 482 BPI_HUMAN 487 CETP_HUMAN 493 CETP_MESAU 289 CETP_RABIT 497 LBP_HUMAN 477 LBP_RABIT 482 Pratt run started at Thu Feb 6 20:10:33 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 28.6904 7( 7) P-x(2)-T-A-x(2)-L-x(4)-K-G-x(1,2)-F 2: 24.5203 7( 7) T-A-x(2)-L-x(4)-K-G-x(1,2)-F 3: 20.3503 7( 7) A-x(2)-L-x(4)-K-G-x(1,2)-F 4: 19.8503 9( 7) G-x(0,2)-L-x(3)-I-x(4)-I-x(3)-G 5: 19.3503 9( 7) G-x(0,2)-L-x(2,3)-I-x(4)-I-x(3)-G 6: 19.3503 7( 7) L-x(2,3)-A-x(3)-G-x(1,3)-L-x(3)-L 7: 19.3503 9( 7) T-x(1,3)-L-x(4)-K-G-x(1,2)-F 8: 16.1802 8( 7) G-L-x(3,4)-I-x(4)-I 9: 16.1802 7( 7) V-x(4,5)-L-x-N-x(5)-L 10: 16.1802 7( 7) L-x(4)-K-G-x(1,2)-F 11: 16.1802 7( 7) T-x(1,2)-P-V-x-T 12: 15.6802 10( 7) L-L-x(2,3)-L-x(1,2)-S 13: 15.6802 9( 7) F-x(2,3)-L-x(4,5)-L-x(2)-L 14: 15.6802 7( 7) L-Q-x(4)-F-x(1,3)-L 15: 15.6802 10( 7) L-x(4,5)-G-x(0,1)-F-x(4)-L 16: 15.6802 7( 7) L-x(5)-G-x(0,1)-F-x(3,4)-L 17: 15.6802 7( 7) L-L-x(0,1)-L-x(4,5)-G 18: 15.6802 8( 7) L-x-L-x(4,5)-G-x(0,1)-P 19: 15.6802 7( 7) D-x(2,3)-L-L-x(0,1)-L 20: 15.6802 7( 7) L-x(2,3)-I-x(4)-I-x(3,4)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 51.7160 7( 7) L-x(2,3)-A-x-[QR]-[DEQ]-G-x(1,3)-L-x(3)-L-x(4)-[FIL]-x(4)-[DEG]-[DNST]-x(2)-[FI]-x(3)-[GQ]-[EKR]-[AGI]-x(3)-[FLV]-x(4)-[ILP]-x(3)-[AEGNQ] B 2: 39.8504 9( 7) G-x(0,2)-L-x(3)-I-[NRS]-[DNP]-[AES]-x-I-x(2)-[DQRS]-G-x(3)-[ALV]-[QR]-x(2)-F C 3: 39.3504 9( 7) G-x(0,2)-L-x(2,3)-I-[NRS]-[DNP]-[AES]-x-I-x(2)-[DQRS]-G-x(3)-[ALV]-[QR]-x(2)-F D 4: 33.5108 7( 7) P-x(2)-T-A-[EGNQST]-x-L-[DE]-x(3)-K-G-x(1,2)-F E 5: 32.4429 10( 7) L-x(4,5)-G-x(0,1)-F-[NPS]-x-[EH]-x-L-x-[ADS]-[FILV]-[ILM]-[NQ] F 6: 31.4116 7( 7) L-x(2,3)-I-x-[DN]-[APS]-x-I-x(3,4)-G-x(3)-[ALV]-[QR]-x(2)-F G 7: 29.3407 7( 7) T-A-[EGNQST]-x-L-[DE]-x(3)-K-G-x(1,2)-F H 8: 29.1881 7( 7) G-L-x(3,4)-I-x(4)-I-x(2)-[QRS]-[DGQ]-x(3)-[ALV]-x(4)-[FIL]-x-[FLMV] I 9: 28.8333 7( 7) L-x(4)-[FIV]-G-x(0,1)-F-x(3,4)-L-x-[ADSV]-[FILV]-[ILM]-[NQ] J 10: 25.1707 7( 7) A-[EGNQST]-x-L-[DE]-x(3)-K-G-x(1,2)-F K 11: 24.2205 7( 7) D-x(2,3)-L-L-x(0,1)-L-x(2)-[DNS]-x-[GI]-x-[APS] L 12: 23.6265 7( 7) L-Q-x(3)-[DGN]-F-x(1,3)-L-x-[AGV]-[ADN] M 13: 22.5209 9( 7) T-x(1,3)-L-[DE]-x(3)-K-G-x(1,2)-F N 14: 21.0625 7( 7) V-x(4,5)-L-x-N-x(4)-[DNPS]-L-x(3)-[GIP] O 15: 20.9446 7( 7) L-x(2,3)-A-x-[QR]-[DEQ]-G-x(1,3)-L P 16: 19.3508 7( 7) L-[DE]-x(3)-K-G-x(1,2)-F Q 17: 18.3052 7( 7) F-x(2,3)-L-x(4,5)-L-x-[DNS]-L R 18: 16.1802 7( 7) T-x(1,2)-P-V-x-T S 19: 15.6802 10( 7) L-L-x(2,3)-L-x(1,2)-S T 20: 15.6802 10( 7) L-x(4,5)-G-x(0,1)-F-x(4)-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 51.7160 7( 7) L-x(2,3)-A-x-[QR]-[DEQ]-G-x(1,3)-L-x(3)-L-x(4)-[FIL]-x(4)-[DEG]-[DNST]-x(2)-[FI]-x(3)-[GQ]-[EKR]-[AGI]-x(3)-[FLV]-x(4)-[ILP]-x(3)-[AEGNQ] Occurences: 7(7) BPI_BOVIN : 40- 88: itqkg Ldy-AcQQGvltLqkeLekitIpnfsGNfkIkylGKGqysFfsmvIqgfN lpnsq BPI_HUMAN : 45- 93: isqkg Ldy-AsQQGtaaLqkeLkrikIpdysDSfkIkhlGKGhysFysmdIrefQ lpssq CETP_HUMAN : 290- 337: rvfhs LakvAfQDGr--LmlsLmgdeFkavlETwgFntnQEIfqeVvggfPsqaQ vtvhc CETP_MESAU : 86- 133: qvlds LakvAfQDGr--LqlsLaeaeFravlETwhFnpnQEIipeLfsasLtspG rvtvh CETP_RABIT : 274- 321: qvlns LaraAfQEGr--LvlsLtgdeFkkvlETqgFdtnQEIfqeLsrglPtgqA qvavh LBP_HUMAN : 39- 87: itdkg Lqy-AaQEGllaLqseLlritLpdftGDlrIphvGRGryeFhslnIhscE llhsa LBP_RABIT : 40- 88: itdkg Ley-AaREGllaLqrkLlevtLpdsdGDfrIkhfGRAqykFyslkIprfE llrgt B 2: 39.8504 9( 7) G-x(0,2)-L-x(3)-I-[NRS]-[DNP]-[AES]-x-I-x(2)-[DQRS]-G-x(3)-[ALV]-[QR]-x(2)-F Occurences: 9(7) BPI_BOVIN : 101- 123: plpdk G--LdlsIRDAsIkiRGkwkARknF iklgg BPI_HUMAN : 106- 128: mvpnv G--LkfsISNAnIkiSGkwkAQkrF lkmsg CETP_HUMAN : 454- 478: lmnsk GvsLfdiINPEiItrDGfllLQmdF gfpeh CETP_MESAU : 250- 274: linsk GldLfdiINPEiIsrDGfllLQmdF gfpeh CETP_RABIT : 458- 482: lmnsk GldLfeiINPEiItlDGcllLQmdF gfpkh LBP_HUMAN : 98- 122: lrpvp GqgLslsISDSsIrvQGrwkVRksF fklqg LBP_HUMAN : 100- 122: pvpgq G--LslsISDSsIrvQGrwkVRksF fklqg LBP_RABIT : 99- 123: lrplp GqgLsldISDAyIhvRGswkVRkaF lrlkn LBP_RABIT : 101- 123: plpgq G--LsldISDAyIhvRGswkVRkaF lrlkn C 3: 39.3504 9( 7) G-x(0,2)-L-x(2,3)-I-[NRS]-[DNP]-[AES]-x-I-x(2)-[DQRS]-G-x(3)-[ALV]-[QR]-x(2)-F Occurences: 9(7) BPI_BOVIN : 101- 123: plpdk G--LdlsIRDAsIkiRGkwkARknF iklgg BPI_HUMAN : 106- 128: mvpnv G--LkfsISNAnIkiSGkwkAQkrF lkmsg CETP_HUMAN : 454- 478: lmnsk GvsLfdiINPEiItrDGfllLQmdF gfpeh CETP_MESAU : 250- 274: linsk GldLfdiINPEiIsrDGfllLQmdF gfpeh CETP_RABIT : 458- 482: lmnsk GldLfeiINPEiItlDGcllLQmdF gfpkh LBP_HUMAN : 98- 122: lrpvp GqgLslsISDSsIrvQGrwkVRksF fklqg LBP_HUMAN : 100- 122: pvpgq G--LslsISDSsIrvQGrwkVRksF fklqg LBP_RABIT : 99- 123: lrplp GqgLsldISDAyIhvRGswkVRkaF lrlkn LBP_RABIT : 101- 123: plpgq G--LsldISDAyIhvRGswkVRkaF lrlkn D 4: 33.5108 7( 7) P-x(2)-T-A-[EGNQST]-x-L-[DE]-x(3)-K-G-x(1,2)-F Occurences: 7(7) BPI_BOVIN : 239- 254: slvap PraTANnLDwllKGe-F fslah BPI_BOVIN : 239- 255: slvap PraTANnLDwllKGefF slahr BPI_HUMAN : 244- 259: glvap PatTAEtLDvqmKGe-F ysenh CETP_HUMAN : 238- 253: sltgd PviTASyLEshhKGh-F iyknv CETP_MESAU : 34- 49: sltrs PviTAThLEshhKGh-F vykni CETP_RABIT : 222- 237: svtga PviTATyLEshhKGh-F thknv LBP_HUMAN : 236- 252: slvea PraTAQmLEvmfKGeiF hrnhr LBP_RABIT : 237- 253: slmea PraTAGmLDvmfKGeiF pldhr E 5: 32.4429 10( 7) L-x(4,5)-G-x(0,1)-F-[NPS]-x-[EH]-x-L-x-[ADS]-[FILV]-[ILM]-[NQ] Occurences: 10(7) BPI_BOVIN : 414- 432: kllle LkhsdiGpFSvEsLqSVIN yvmpt BPI_HUMAN : 419- 437: rllle LkhsniGpFPvElLqDIMN yivpi CETP_HUMAN : 473- 490: rdgfl LlqmdfG-FPeHlLvDFLQ sls CETP_HUMAN : 474- 490: dgfll Lqmdf-G-FPeHlLvDFLQ sls CETP_MESAU : 269- 286: rdgfl LlqmdfG-FPeHlLvDFLQ sln CETP_MESAU : 270- 286: dgfll Lqmdf-G-FPeHlLvDFLQ sln CETP_RABIT : 477- 494: ldgcl LlqmdfG-FPkHlLvDFLQ sls CETP_RABIT : 478- 494: dgcll Lqmdf-G-FPkHlLvDFLQ sls LBP_HUMAN : 407- 425: kvkve LkeskvGlFNaElLeALLN yyiln LBP_RABIT : 412- 430: rlqve LkeskvGgFNvElLeALLN yyiln F 6: 31.4116 7( 7) L-x(2,3)-I-x-[DN]-[APS]-x-I-x(3,4)-G-x(3)-[ALV]-[QR]-x(2)-F Occurences: 7(7) BPI_BOVIN : 102- 123: lpdkg LdlsIrDAsIkir-GkwkARknF iklgg BPI_HUMAN : 107- 128: vpnvg LkfsIsNAnIkis-GkwkAQkrF lkmsg CETP_HUMAN : 457- 478: skgvs Lfd-IiNPeIitrdGfllLQmdF gfpeh CETP_MESAU : 253- 274: skgld Lfd-IiNPeIisrdGfllLQmdF gfpeh CETP_RABIT : 461- 482: skgld Lfe-IiNPeIitldGcllLQmdF gfpkh LBP_HUMAN : 101- 122: vpgqg LslsIsDSsIrvq-GrwkVRksF fklqg LBP_RABIT : 102- 123: lpgqg LsldIsDAyIhvr-GswkVRkaF lrlkn G 7: 29.3407 7( 7) T-A-[EGNQST]-x-L-[DE]-x(3)-K-G-x(1,2)-F Occurences: 7(7) BPI_BOVIN : 242- 254: appra TANnLDwllKGe-F fslah BPI_BOVIN : 242- 255: appra TANnLDwllKGefF slahr BPI_HUMAN : 247- 259: appat TAEtLDvqmKGe-F ysenh CETP_HUMAN : 241- 253: gdpvi TASyLEshhKGh-F iyknv CETP_MESAU : 37- 49: rspvi TAThLEshhKGh-F vykni CETP_RABIT : 225- 237: gapvi TATyLEshhKGh-F thknv LBP_HUMAN : 239- 252: eapra TAQmLEvmfKGeiF hrnhr LBP_RABIT : 240- 253: eapra TAGmLDvmfKGeiF pldhr H 8: 29.1881 7( 7) G-L-x(3,4)-I-x(4)-I-x(2)-[QRS]-[DGQ]-x(3)-[ALV]-x(4)-[FIL]-x-[FLMV] Occurences: 7(7) BPI_BOVIN : 101- 126: plpdk GLdls-IrdasIkiRGkwkArknfIkL ggnfd BPI_HUMAN : 106- 131: mvpnv GLkfs-IsnanIkiSGkwkAqkrfLkM sgnfd CETP_HUMAN : 75- 101: gqvky GLhniqIshlsIasSQvelVeaksIdV siqnv CETP_MESAU : 250- 276: linsk GLdlfdIinpeIisRDgflLlqmdFgF pehll CETP_RABIT : 59- 85: grvky GLhnlqIshlsIasSQvelVdaktIdV aiqnv LBP_HUMAN : 100- 125: pvpgq GLsls-IsdssIrvQGrwkVrksfFkL qgsfd LBP_RABIT : 101- 126: plpgq GLsld-IsdayIhvRGswkVrkafLrL knsfd I 9: 28.8333 7( 7) L-x(4)-[FIV]-G-x(0,1)-F-x(3,4)-L-x-[ADSV]-[FILV]-[ILM]-[NQ] Occurences: 7(7) BPI_BOVIN : 414- 432: kllle LkhsdIGpFsvesLqSVIN yvmpt BPI_HUMAN : 419- 437: rllle LkhsnIGpFpvelLqDIMN yivpi CETP_HUMAN : 473- 490: rdgfl LlqmdFG-FpehlLvDFLQ sls CETP_MESAU : 269- 286: rdgfl LlqmdFG-FpehlLvDFLQ sln CETP_RABIT : 477- 494: ldgcl LlqmdFG-FpkhlLvDFLQ sls LBP_HUMAN : 407- 425: kvkve LkeskVGlFnaelLeALLN yyiln LBP_RABIT : 412- 430: rlqve LkeskVGgFnvelLeALLN yyiln J 10: 25.1707 7( 7) A-[EGNQST]-x-L-[DE]-x(3)-K-G-x(1,2)-F Occurences: 7(7) BPI_BOVIN : 243- 254: pprat ANnLDwllKGe-F fslah BPI_BOVIN : 243- 255: pprat ANnLDwllKGefF slahr BPI_HUMAN : 248- 259: ppatt AEtLDvqmKGe-F ysenh CETP_HUMAN : 242- 253: dpvit ASyLEshhKGh-F iyknv CETP_MESAU : 38- 49: spvit AThLEshhKGh-F vykni CETP_RABIT : 226- 237: apvit ATyLEshhKGh-F thknv LBP_HUMAN : 240- 252: aprat AQmLEvmfKGeiF hrnhr LBP_RABIT : 241- 253: aprat AGmLDvmfKGeiF pldhr K 11: 24.2205 7( 7) D-x(2,3)-L-L-x(0,1)-L-x(2)-[DNS]-x-[GI]-x-[APS] Occurences: 7(7) BPI_BOVIN : 408- 421: gelrl Dkl-LLeLkhSdIgP fsves BPI_HUMAN : 413- 426: gelkl Drl-LLeLkhSnIgP fpvel CETP_HUMAN : 469- 481: eiitr Dgf-LL-LqmDfGfP ehllv CETP_MESAU : 265- 277: eiisr Dgf-LL-LqmDfGfP ehllv CETP_RABIT : 473- 485: eiitl Dgc-LL-LqmDfGfP khllv LBP_HUMAN : 173- 187: vdmsg DsgwLLnLfhNqIeS kfqkv LBP_RABIT : 174- 188: ldieg DleeLLnLlqSqIdA rlrev L 12: 23.6265 7( 7) L-Q-x(3)-[DGN]-F-x(1,3)-L-x-[AGV]-[ADN] Occurences: 7(7) BPI_BOVIN : 466- 477: lfnlt LQpyqDFl--LfGA dvqys BPI_HUMAN : 471- 482: lynvv LQphqNFl--LfGA dvvyk CETP_HUMAN : 474- 487: dgfll LQmdfGFpehLlVD flqsl CETP_MESAU : 270- 283: dgfll LQmdfGFpehLlVD flqsl CETP_RABIT : 478- 491: dgcll LQmdfGFpkhLlVD flqsl LBP_HUMAN : 459- 471: lydlg LQihkDFlf-LgAN vqymr LBP_RABIT : 464- 475: lydll LQtheNFl--LvGA niqyr M 13: 22.5209 9( 7) T-x(1,3)-L-[DE]-x(3)-K-G-x(1,2)-F Occurences: 9(7) BPI_BOVIN : 242- 254: appra TannLDwllKGe-F fslah BPI_BOVIN : 242- 255: appra TannLDwllKGefF slahr BPI_HUMAN : 247- 259: appat TaetLDvqmKGe-F ysenh CETP_HUMAN : 241- 253: gdpvi TasyLEshhKGh-F iyknv CETP_MESAU : 37- 49: rspvi TathLEshhKGh-F vykni CETP_MESAU : 39- 49: pvita Th--LEshhKGh-F vykni CETP_RABIT : 225- 237: gapvi TatyLEshhKGh-F thknv CETP_RABIT : 227- 237: pvita Ty--LEshhKGh-F thknv LBP_HUMAN : 239- 252: eapra TaqmLEvmfKGeiF hrnhr LBP_RABIT : 240- 253: eapra TagmLDvmfKGeiF pldhr N 14: 21.0625 7( 7) V-x(4,5)-L-x-N-x(4)-[DNPS]-L-x(3)-[GIP] Occurences: 7(7) BPI_BOVIN : 83- 101: sffsm ViqgfnLpNsqirPLpdkG ldlsi BPI_HUMAN : 372- 390: ypavd VqafavLpNsslaSLfliG mhttg CETP_HUMAN : 444- 461: msrle Vvfta-LmNskgvSLfdiI npeii CETP_MESAU : 240- 257: msrle Valtt-LiNskglDLfdiI npeii CETP_RABIT : 448- 465: msrle Vafta-LmNskglDLfeiI npeii LBP_HUMAN : 339- 356: elqgs Vpsap-LlNfspgNLsvdP ymeid LBP_RABIT : 344- 361: elqgt Vnseq-LvNlsteNLleeP emdie O 15: 20.9446 7( 7) L-x(2,3)-A-x-[QR]-[DEQ]-G-x(1,3)-L Occurences: 7(7) BPI_BOVIN : 40- 51: itqkg Ldy-AcQQGvltL qkele BPI_HUMAN : 45- 56: isqkg Ldy-AsQQGtaaL qkelk CETP_HUMAN : 290- 300: rvfhs LakvAfQDGr--L mlslm CETP_MESAU : 86- 96: qvlds LakvAfQDGr--L qlsla CETP_RABIT : 274- 284: qvlns LaraAfQEGr--L vlslt LBP_HUMAN : 39- 50: itdkg Lqy-AaQEGllaL qsell LBP_RABIT : 40- 51: itdkg Ley-AaREGllaL qrkll P 16: 19.3508 7( 7) L-[DE]-x(3)-K-G-x(1,2)-F Occurences: 7(7) BPI_BOVIN : 246- 254: atann LDwllKGe-F fslah BPI_BOVIN : 246- 255: atann LDwllKGefF slahr BPI_HUMAN : 251- 259: ttaet LDvqmKGe-F ysenh CETP_HUMAN : 245- 253: itasy LEshhKGh-F iyknv CETP_MESAU : 41- 49: itath LEshhKGh-F vykni CETP_RABIT : 229- 237: itaty LEshhKGh-F thknv LBP_HUMAN : 243- 252: ataqm LEvmfKGeiF hrnhr LBP_RABIT : 244- 253: atagm LDvmfKGeiF pldhr Q 17: 18.3052 7( 7) F-x(2,3)-L-x(4,5)-L-x-[DNS]-L Occurences: 7(7) BPI_BOVIN : 451- 464: klqkg FplpLpayieLfNL tlqpy BPI_HUMAN : 375- 386: vdvqa Fav-Lpnss-LaSL fligm CETP_HUMAN : 480- 492: qmdfg FpehLlvdf-LqSL s CETP_MESAU : 276- 288: qmdfg FpehLlvdf-LqSL n CETP_RABIT : 484- 496: qmdfg FpkhLlvdf-LqSL s LBP_HUMAN : 444- 457: klaeg FplpLlkrvqLyDL glqih LBP_RABIT : 449- 462: klahr FplpLlrhiqLyDL llqth R 18: 16.1802 7( 7) T-x(1,2)-P-V-x-T Occurences: 7(7) BPI_BOVIN : 218- 223: qpyfq Tl-PVtT kldkv BPI_HUMAN : 223- 228: qpyfq Tl-PVmT kidsv CETP_HUMAN : 235- 241: vdisl TgdPViT asyle CETP_MESAU : 31- 37: vdisl TrsPViT athle CETP_RABIT : 219- 225: vdisv TgaPViT atyle LBP_HUMAN : 215- 220: qpylq Tl-PVtT eidsf LBP_RABIT : 216- 221: qpylq Tl-PVtT qidsf S 19: 15.6802 10( 7) L-L-x(2,3)-L-x(1,2)-S Occurences: 10(7) BPI_BOVIN : 383- 391: ldplf LLemnLnlS vvvga BPI_BOVIN : 410- 417: lrldk LLle-LkhS digpf BPI_HUMAN : 415- 422: lkldr LLle-LkhS nigpf CETP_HUMAN : 484- 491: gfpeh LLvdfLq-S ls CETP_MESAU : 280- 287: gfpeh LLvdfLq-S ln CETP_RABIT : 488- 495: gfpkh LLvdfLq-S ls LBP_HUMAN : 12- 19: alpsi LLallLt-S tpeal LBP_HUMAN : 12- 19: alpsi LLal-LltS tpeal LBP_RABIT : 8- 15: twara LLgstLl-S lllaa LBP_RABIT : 55- 63: alqrk LLevtLpdS dgdfr LBP_RABIT : 178- 184: gdlee LLnl-Lq-S qidar T 20: 15.6802 10( 7) L-x(4,5)-G-x(0,1)-F-x(4)-L Occurences: 10(7) BPI_BOVIN : 414- 427: kllle LkhsdiGpFsvesL qsvin BPI_HUMAN : 419- 432: rllle LkhsniGpFpvelL qdimn CETP_HUMAN : 473- 485: rdgfl LlqmdfG-FpehlL vdflq CETP_HUMAN : 474- 485: dgfll Lqmdf-G-FpehlL vdflq CETP_MESAU : 269- 281: rdgfl LlqmdfG-FpehlL vdflq CETP_MESAU : 270- 281: dgfll Lqmdf-G-FpehlL vdflq CETP_RABIT : 477- 489: ldgcl LlqmdfG-FpkhlL vdflq CETP_RABIT : 478- 489: dgcll Lqmdf-G-FpkhlL vdflq LBP_HUMAN : 407- 420: kvkve LkeskvGlFnaelL ealln LBP_RABIT : 412- 425: rlqve LkeskvGgFnvelL ealln Number of patterns evaluated by Pratt:9878 Total running time: 6 seconds