------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 10 sequences from file LAMP_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 10 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename LAMP_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CD68_HUMAN 354 CD68_MOUSE 326 LMP1_BOVIN 408 LMP1_CHICK 414 LMP1_HUMAN 416 LMP1_MOUSE 406 LMP1_RAT 407 LMP2_HUMAN 408 LMP2_MOUSE 415 LMP2_RAT 411 Pratt run started at Thu Feb 6 20:10:27 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 40.2005 10( 10) C-x(2)-D-x(2,4)-L-x(1,2)-P-x(3)-G-x(2)-L-x-G-x(4)-V-L-x-A 2: 37.0305 10( 10) D-x(4)-L-x(0,1)-P-x(3)-G-x(2)-L-x-G-x(4)-V-L-x-A 3: 36.5305 10( 10) L-x-P-x(0,1)-I-x(1,2)-G-x(2)-L-x-G-x(4)-V-L-x-A 4: 36.5305 11( 10) D-x(3,4)-L-x(0,1)-P-x(3)-G-x(2)-L-x-G-x(4)-V-L-x-A 5: 36.0305 14( 10) D-x(2,4)-L-x(1,2)-P-x(3)-G-x(2)-L-x-G-x(4)-V-L-x-A 6: 32.8604 11( 10) L-x(1,2)-P-x(3)-G-x(2)-L-x-G-x(4)-V-L-x-A 7: 32.8604 12( 10) L-x(0,1)-P-x(3)-G-x(2)-L-x-G-x(4)-V-L-x-A 8: 32.3604 13( 10) L-x(0,2)-P-x(3)-G-x(2)-L-x-G-x(4)-V-L-x-A 9: 32.3604 10( 10) P-x(0,1)-I-x(1,2)-G-x(2)-L-x-G-x(4)-V-L-x-A 10: 32.3604 12( 10) L-x(2,3)-I-x(1,2)-G-x(2)-L-x-G-x(4)-V-L-x-A 11: 32.3604 10( 10) L-x(1,2)-I-x(1,2)-G-x(2)-L-x-G-x(4)-V-L-x-A 12: 31.8604 12( 10) L-x(0,2)-I-x(1,2)-G-x(2)-L-x-G-x(4)-V-L-x-A 13: 31.8604 12( 10) L-x(1,2)-I-x(0,2)-G-x(2)-L-x-G-x(4)-V-L-x-A 14: 24.0203 10( 10) G-x(0,1)-L-x-L-x(0,1)-V-L-x-A 15: 24.0203 12( 10) L-x(2,3)-L-x-L-x(0,1)-V-L-x-A 16: 24.0203 10( 10) G-x(2,3)-L-x(0,1)-G-x(4)-V-L-x-A 17: 24.0203 13( 10) I-x(4,5)-L-x(0,1)-G-x(4)-V-L-x-A 18: 23.5203 13( 10) L-x(0,1)-P-x(3)-G-x(4)-G-x(2,4)-V-L 19: 20.3503 10( 10) L-x-L-x(0,1)-V-L-x-A 20: 19.8503 13( 10) L-x(1,2)-L-x(0,1)-V-L-x-A Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 86.8131 10( 10) C-x(2)-D-x(2,4)-L-x(1,2)-P-[IL]-[AI]-[IV]-G-[AGL]-[AIV]-L-[AGL]-G-[LV]-[LV]-x-[IL]-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] B 2: 83.6430 10( 10) D-x(4)-L-x(0,1)-P-[IL]-[AI]-[IV]-G-[AGL]-[AIV]-L-[AGL]-G-[LV]-[LV]-x-[IL]-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] C 3: 83.1430 11( 10) D-x(3,4)-L-x(0,1)-P-[IL]-[AI]-[IV]-G-[AGL]-[AIV]-L-[AGL]-G-[LV]-[LV]-x-[IL]-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] D 4: 82.6430 14( 10) D-x(2,4)-L-x(1,2)-P-[IL]-[AI]-[IV]-G-[AGL]-[AIV]-L-[AGL]-G-[LV]-[LV]-x-[IL]-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] E 5: 76.0015 10( 10) L-[ILV]-P-x(0,1)-I-x(1,2)-G-[AGL]-[AIV]-L-[AGL]-G-[LV]-[LV]-x-[IL]-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] F 6: 69.6696 11( 10) L-x(1,2)-P-x(3)-G-[AGL]-[AIV]-L-[AGL]-G-[LV]-[LV]-x-[IL]-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] G 7: 69.6696 12( 10) L-x(0,1)-P-x(3)-G-[AGL]-[AIV]-L-[AGL]-G-[LV]-[LV]-x-[IL]-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] H 8: 69.1696 13( 10) L-x(0,2)-P-x(3)-G-[AGL]-[AIV]-L-[AGL]-G-[LV]-[LV]-x-[IL]-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] I 9: 69.1696 10( 10) P-x(0,1)-I-x(1,2)-G-[AGL]-[AIV]-L-[AGL]-G-[LV]-[LV]-x-[IL]-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] J 10: 69.1696 12( 10) L-x(2,3)-I-x(1,2)-G-[AGL]-[AIV]-L-[AGL]-G-[LV]-[LV]-x-[IL]-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] K 11: 69.1696 10( 10) L-x(1,2)-I-x(1,2)-G-[AGL]-[AIV]-L-[AGL]-G-[LV]-[LV]-x-[IL]-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] L 12: 68.8189 12( 10) L-x(0,1)-P-[IL]-[AI]-[IV]-G-[AGL]-[AIV]-L-[AGL]-G-x(2,4)-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] M 13: 68.6696 12( 10) L-x(0,2)-I-x(1,2)-G-[AGL]-[AIV]-L-[AGL]-G-[LV]-[LV]-x-[IL]-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] N 14: 68.6696 12( 10) L-x(1,2)-I-x(0,2)-G-[AGL]-[AIV]-L-[AGL]-G-[LV]-[LV]-x-[IL]-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] O 15: 52.9935 10( 10) G-x(2,3)-L-x(0,1)-G-[LV]-[LV]-x-[IL]-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] P 16: 52.9935 13( 10) I-x(4,5)-L-x(0,1)-G-[LV]-[LV]-x-[IL]-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] Q 17: 43.3394 10( 10) G-x(0,1)-L-x-L-x(0,1)-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] R 18: 43.3394 12( 10) L-x(2,3)-L-x-L-x(0,1)-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] S 19: 41.1597 12( 10) L-x(0,1)-P-[IL]-[AI]-[IV]-G-[AGL]-[AIV]-L-[AGL]-G-x(2,4)-V T 20: 39.6694 10( 10) L-x-L-x(0,1)-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 86.8131 10( 10) C-x(2)-D-x(2,4)-L-x(1,2)-P-[IL]-[AI]-[IV]-G-[AGL]-[AIV]-L-[AGL]-G-[LV]-[LV]-x-[IL]-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] Occurences: 10(10) CD68_HUMAN : 314- 350: gqsfs CpsDrsi-Ll-PLIIGLILLGLLaLVLIAFcIirRRpsA yqal CD68_MOUSE : 286- 322: gpcfs CnrDqsl-Ll-PLIIGLVLLGLLtLVLIAFcItrRRqsT yqpl CD68_MOUSE : 286- 322: gpcfs CnrDqs--LllPLIIGLVLLGLLtLVLIAFcItrRRqsT yqpl LMP1_BOVIN : 366- 403: gpvee CqlDensmLi-PIAVGGALAGLVlIVLLAYlIgrKRshA gyqti LMP1_CHICK : 372- 409: gamee CqlDennmLi-PIIVGAALAGLVlIVLIAYlIgrKRshA gyqti LMP1_HUMAN : 374- 411: gsvee CllDenstLi-PIAVGGALAGLVlIVLIAYlVgrKRshA gyqti LMP1_MOUSE : 364- 401: gsvee CvqDgnnmLi-PIAVGGALAGLVlIVLIAYlIgrKRshA gyqti LMP1_RAT : 365- 402: gsvee CvqDgnnmLi-PIAVGGALAGLVlIVLIAYlIgrKRshA gyqti LMP2_HUMAN : 366- 403: staqd CsaDddnfLv-PIAVGAALAGVLiLVLLAYfIglKHhhA gyeqf LMP2_MOUSE : 373- 410: staqd CsaDednfLv-PIAVGAALGGVLiLVLLAYfIglKRhhT gyeqf LMP2_RAT : 369- 406: staqd CsaDednfLv-PIAVGAALGGVLiLVLLAYfIglKRhhT gyeqf B 2: 83.6430 10( 10) D-x(4)-L-x(0,1)-P-[IL]-[AI]-[IV]-G-[AGL]-[AIV]-L-[AGL]-G-[LV]-[LV]-x-[IL]-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] Occurences: 10(10) CD68_HUMAN : 317- 350: fscps DrsilL-PLIIGLILLGLLaLVLIAFcIirRRpsA yqal CD68_MOUSE : 289- 322: fscnr DqsllL-PLIIGLVLLGLLtLVLIAFcItrRRqsT yqpl LMP1_BOVIN : 369- 403: eecql DensmLiPIAVGGALAGLVlIVLLAYlIgrKRshA gyqti LMP1_CHICK : 375- 409: eecql DennmLiPIIVGAALAGLVlIVLIAYlIgrKRshA gyqti LMP1_HUMAN : 377- 411: eecll DenstLiPIAVGGALAGLVlIVLIAYlVgrKRshA gyqti LMP1_MOUSE : 367- 401: eecvq DgnnmLiPIAVGGALAGLVlIVLIAYlIgrKRshA gyqti LMP1_RAT : 368- 402: eecvq DgnnmLiPIAVGGALAGLVlIVLIAYlIgrKRshA gyqti LMP2_HUMAN : 369- 403: qdcsa DddnfLvPIAVGAALAGVLiLVLLAYfIglKHhhA gyeqf LMP2_MOUSE : 376- 410: qdcsa DednfLvPIAVGAALGGVLiLVLLAYfIglKRhhT gyeqf LMP2_RAT : 372- 406: qdcsa DednfLvPIAVGAALGGVLiLVLLAYfIglKRhhT gyeqf C 3: 83.1430 11( 10) D-x(3,4)-L-x(0,1)-P-[IL]-[AI]-[IV]-G-[AGL]-[AIV]-L-[AGL]-G-[LV]-[LV]-x-[IL]-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] Occurences: 11(10) CD68_HUMAN : 317- 350: fscps DrsilL-PLIIGLILLGLLaLVLIAFcIirRRpsA yqal CD68_HUMAN : 317- 350: fscps Drsi-LlPLIIGLILLGLLaLVLIAFcIirRRpsA yqal CD68_MOUSE : 289- 322: fscnr DqsllL-PLIIGLVLLGLLtLVLIAFcItrRRqsT yqpl CD68_MOUSE : 289- 322: fscnr Dqsl-LlPLIIGLVLLGLLtLVLIAFcItrRRqsT yqpl LMP1_BOVIN : 369- 403: eecql DensmLiPIAVGGALAGLVlIVLLAYlIgrKRshA gyqti LMP1_CHICK : 375- 409: eecql DennmLiPIIVGAALAGLVlIVLIAYlIgrKRshA gyqti LMP1_HUMAN : 377- 411: eecll DenstLiPIAVGGALAGLVlIVLIAYlVgrKRshA gyqti LMP1_MOUSE : 367- 401: eecvq DgnnmLiPIAVGGALAGLVlIVLIAYlIgrKRshA gyqti LMP1_RAT : 368- 402: eecvq DgnnmLiPIAVGGALAGLVlIVLIAYlIgrKRshA gyqti LMP2_HUMAN : 369- 403: qdcsa DddnfLvPIAVGAALAGVLiLVLLAYfIglKHhhA gyeqf LMP2_HUMAN : 370- 403: dcsad Ddnf-LvPIAVGAALAGVLiLVLLAYfIglKHhhA gyeqf LMP2_MOUSE : 376- 410: qdcsa DednfLvPIAVGAALGGVLiLVLLAYfIglKRhhT gyeqf LMP2_RAT : 372- 406: qdcsa DednfLvPIAVGAALGGVLiLVLLAYfIglKRhhT gyeqf D 4: 82.6430 14( 10) D-x(2,4)-L-x(1,2)-P-[IL]-[AI]-[IV]-G-[AGL]-[AIV]-L-[AGL]-G-[LV]-[LV]-x-[IL]-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] Occurences: 14(10) CD68_HUMAN : 317- 350: fscps Drsi-Ll-PLIIGLILLGLLaLVLIAFcIirRRpsA yqal CD68_MOUSE : 289- 322: fscnr Dqsl-Ll-PLIIGLVLLGLLtLVLIAFcItrRRqsT yqpl CD68_MOUSE : 289- 322: fscnr Dqs--LllPLIIGLVLLGLLtLVLIAFcItrRRqsT yqpl LMP1_BOVIN : 369- 403: eecql DensmLi-PIAVGGALAGLVlIVLLAYlIgrKRshA gyqti LMP1_CHICK : 375- 409: eecql DennmLi-PIIVGAALAGLVlIVLIAYlIgrKRshA gyqti LMP1_HUMAN : 377- 411: eecll DenstLi-PIAVGGALAGLVlIVLIAYlVgrKRshA gyqti LMP1_MOUSE : 367- 401: eecvq DgnnmLi-PIAVGGALAGLVlIVLIAYlIgrKRshA gyqti LMP1_RAT : 368- 402: eecvq DgnnmLi-PIAVGGALAGLVlIVLIAYlIgrKRshA gyqti LMP2_HUMAN : 369- 403: qdcsa DddnfLv-PIAVGAALAGVLiLVLLAYfIglKHhhA gyeqf LMP2_HUMAN : 370- 403: dcsad Ddnf-Lv-PIAVGAALAGVLiLVLLAYfIglKHhhA gyeqf LMP2_HUMAN : 371- 403: csadd Dnf--Lv-PIAVGAALAGVLiLVLLAYfIglKHhhA gyeqf LMP2_MOUSE : 376- 410: qdcsa DednfLv-PIAVGAALGGVLiLVLLAYfIglKRhhT gyeqf LMP2_MOUSE : 378- 410: csade Dnf--Lv-PIAVGAALGGVLiLVLLAYfIglKRhhT gyeqf LMP2_RAT : 372- 406: qdcsa DednfLv-PIAVGAALGGVLiLVLLAYfIglKRhhT gyeqf LMP2_RAT : 374- 406: csade Dnf--Lv-PIAVGAALGGVLiLVLLAYfIglKRhhT gyeqf E 5: 76.0015 10( 10) L-[ILV]-P-x(0,1)-I-x(1,2)-G-[AGL]-[AIV]-L-[AGL]-G-[LV]-[LV]-x-[IL]-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] Occurences: 10(10) CD68_HUMAN : 321- 350: sdrsi LLPlIi-GLILLGLLaLVLIAFcIirRRpsA yqal CD68_MOUSE : 293- 322: rdqsl LLPlIi-GLVLLGLLtLVLIAFcItrRRqsT yqpl LMP1_BOVIN : 374- 403: densm LIP-IavGGALAGLVlIVLLAYlIgrKRshA gyqti LMP1_CHICK : 380- 409: dennm LIPiIv-GAALAGLVlIVLIAYlIgrKRshA gyqti LMP1_CHICK : 380- 409: dennm LIP-IivGAALAGLVlIVLIAYlIgrKRshA gyqti LMP1_HUMAN : 382- 411: denst LIP-IavGGALAGLVlIVLIAYlVgrKRshA gyqti LMP1_MOUSE : 372- 401: dgnnm LIP-IavGGALAGLVlIVLIAYlIgrKRshA gyqti LMP1_RAT : 373- 402: dgnnm LIP-IavGGALAGLVlIVLIAYlIgrKRshA gyqti LMP2_HUMAN : 374- 403: dddnf LVP-IavGAALAGVLiLVLLAYfIglKHhhA gyeqf LMP2_MOUSE : 381- 410: dednf LVP-IavGAALGGVLiLVLLAYfIglKRhhT gyeqf LMP2_RAT : 377- 406: dednf LVP-IavGAALGGVLiLVLLAYfIglKRhhT gyeqf F 6: 69.6696 11( 10) L-x(1,2)-P-x(3)-G-[AGL]-[AIV]-L-[AGL]-G-[LV]-[LV]-x-[IL]-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] Occurences: 11(10) CD68_HUMAN : 321- 350: sdrsi Ll-PliiGLILLGLLaLVLIAFcIirRRpsA yqal CD68_MOUSE : 292- 322: nrdqs LllPliiGLVLLGLLtLVLIAFcItrRRqsT yqpl CD68_MOUSE : 293- 322: rdqsl Ll-PliiGLVLLGLLtLVLIAFcItrRRqsT yqpl LMP1_BOVIN : 374- 403: densm Li-PiavGGALAGLVlIVLLAYlIgrKRshA gyqti LMP1_CHICK : 380- 409: dennm Li-PiivGAALAGLVlIVLIAYlIgrKRshA gyqti LMP1_HUMAN : 382- 411: denst Li-PiavGGALAGLVlIVLIAYlVgrKRshA gyqti LMP1_MOUSE : 372- 401: dgnnm Li-PiavGGALAGLVlIVLIAYlIgrKRshA gyqti LMP1_RAT : 373- 402: dgnnm Li-PiavGGALAGLVlIVLIAYlIgrKRshA gyqti LMP2_HUMAN : 374- 403: dddnf Lv-PiavGAALAGVLiLVLLAYfIglKHhhA gyeqf LMP2_MOUSE : 381- 410: dednf Lv-PiavGAALGGVLiLVLLAYfIglKRhhT gyeqf LMP2_RAT : 377- 406: dednf Lv-PiavGAALGGVLiLVLLAYfIglKRhhT gyeqf G 7: 69.6696 12( 10) L-x(0,1)-P-x(3)-G-[AGL]-[AIV]-L-[AGL]-G-[LV]-[LV]-x-[IL]-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] Occurences: 12(10) CD68_HUMAN : 321- 350: sdrsi LlPliiGLILLGLLaLVLIAFcIirRRpsA yqal CD68_HUMAN : 322- 350: drsil L-PliiGLILLGLLaLVLIAFcIirRRpsA yqal CD68_MOUSE : 293- 322: rdqsl LlPliiGLVLLGLLtLVLIAFcItrRRqsT yqpl CD68_MOUSE : 294- 322: dqsll L-PliiGLVLLGLLtLVLIAFcItrRRqsT yqpl LMP1_BOVIN : 374- 403: densm LiPiavGGALAGLVlIVLLAYlIgrKRshA gyqti LMP1_CHICK : 380- 409: dennm LiPiivGAALAGLVlIVLIAYlIgrKRshA gyqti LMP1_HUMAN : 382- 411: denst LiPiavGGALAGLVlIVLIAYlVgrKRshA gyqti LMP1_MOUSE : 372- 401: dgnnm LiPiavGGALAGLVlIVLIAYlIgrKRshA gyqti LMP1_RAT : 373- 402: dgnnm LiPiavGGALAGLVlIVLIAYlIgrKRshA gyqti LMP2_HUMAN : 374- 403: dddnf LvPiavGAALAGVLiLVLLAYfIglKHhhA gyeqf LMP2_MOUSE : 381- 410: dednf LvPiavGAALGGVLiLVLLAYfIglKRhhT gyeqf LMP2_RAT : 377- 406: dednf LvPiavGAALGGVLiLVLLAYfIglKRhhT gyeqf H 8: 69.1696 13( 10) L-x(0,2)-P-x(3)-G-[AGL]-[AIV]-L-[AGL]-G-[LV]-[LV]-x-[IL]-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] Occurences: 13(10) CD68_HUMAN : 321- 350: sdrsi Ll-PliiGLILLGLLaLVLIAFcIirRRpsA yqal CD68_HUMAN : 322- 350: drsil L--PliiGLILLGLLaLVLIAFcIirRRpsA yqal CD68_MOUSE : 292- 322: nrdqs LllPliiGLVLLGLLtLVLIAFcItrRRqsT yqpl CD68_MOUSE : 293- 322: rdqsl Ll-PliiGLVLLGLLtLVLIAFcItrRRqsT yqpl CD68_MOUSE : 294- 322: dqsll L--PliiGLVLLGLLtLVLIAFcItrRRqsT yqpl LMP1_BOVIN : 374- 403: densm Li-PiavGGALAGLVlIVLLAYlIgrKRshA gyqti LMP1_CHICK : 380- 409: dennm Li-PiivGAALAGLVlIVLIAYlIgrKRshA gyqti LMP1_HUMAN : 382- 411: denst Li-PiavGGALAGLVlIVLIAYlVgrKRshA gyqti LMP1_MOUSE : 372- 401: dgnnm Li-PiavGGALAGLVlIVLIAYlIgrKRshA gyqti LMP1_RAT : 373- 402: dgnnm Li-PiavGGALAGLVlIVLIAYlIgrKRshA gyqti LMP2_HUMAN : 374- 403: dddnf Lv-PiavGAALAGVLiLVLLAYfIglKHhhA gyeqf LMP2_MOUSE : 381- 410: dednf Lv-PiavGAALGGVLiLVLLAYfIglKRhhT gyeqf LMP2_RAT : 377- 406: dednf Lv-PiavGAALGGVLiLVLLAYfIglKRhhT gyeqf I 9: 69.1696 10( 10) P-x(0,1)-I-x(1,2)-G-[AGL]-[AIV]-L-[AGL]-G-[LV]-[LV]-x-[IL]-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] Occurences: 10(10) CD68_HUMAN : 323- 350: rsill PlIi-GLILLGLLaLVLIAFcIirRRpsA yqal CD68_MOUSE : 295- 322: qslll PlIi-GLVLLGLLtLVLIAFcItrRRqsT yqpl LMP1_BOVIN : 376- 403: nsmli P-IavGGALAGLVlIVLLAYlIgrKRshA gyqti LMP1_CHICK : 382- 409: nnmli PiIv-GAALAGLVlIVLIAYlIgrKRshA gyqti LMP1_CHICK : 382- 409: nnmli P-IivGAALAGLVlIVLIAYlIgrKRshA gyqti LMP1_HUMAN : 384- 411: nstli P-IavGGALAGLVlIVLIAYlVgrKRshA gyqti LMP1_MOUSE : 374- 401: nnmli P-IavGGALAGLVlIVLIAYlIgrKRshA gyqti LMP1_RAT : 375- 402: nnmli P-IavGGALAGLVlIVLIAYlIgrKRshA gyqti LMP2_HUMAN : 376- 403: dnflv P-IavGAALAGVLiLVLLAYfIglKHhhA gyeqf LMP2_MOUSE : 383- 410: dnflv P-IavGAALGGVLiLVLLAYfIglKRhhT gyeqf LMP2_RAT : 379- 406: dnflv P-IavGAALGGVLiLVLLAYfIglKRhhT gyeqf J 10: 69.1696 12( 10) L-x(2,3)-I-x(1,2)-G-[AGL]-[AIV]-L-[AGL]-G-[LV]-[LV]-x-[IL]-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] Occurences: 12(10) CD68_HUMAN : 321- 350: sdrsi LlplIi-GLILLGLLaLVLIAFcIirRRpsA yqal CD68_HUMAN : 322- 350: drsil Lpl-Ii-GLILLGLLaLVLIAFcIirRRpsA yqal CD68_MOUSE : 293- 322: rdqsl LlplIi-GLVLLGLLtLVLIAFcItrRRqsT yqpl CD68_MOUSE : 294- 322: dqsll Lpl-Ii-GLVLLGLLtLVLIAFcItrRRqsT yqpl LMP1_BOVIN : 374- 403: densm Lip-IavGGALAGLVlIVLLAYlIgrKRshA gyqti LMP1_CHICK : 380- 409: dennm LipiIv-GAALAGLVlIVLIAYlIgrKRshA gyqti LMP1_CHICK : 380- 409: dennm Lip-IivGAALAGLVlIVLIAYlIgrKRshA gyqti LMP1_HUMAN : 382- 411: denst Lip-IavGGALAGLVlIVLIAYlVgrKRshA gyqti LMP1_MOUSE : 372- 401: dgnnm Lip-IavGGALAGLVlIVLIAYlIgrKRshA gyqti LMP1_RAT : 373- 402: dgnnm Lip-IavGGALAGLVlIVLIAYlIgrKRshA gyqti LMP2_HUMAN : 374- 403: dddnf Lvp-IavGAALAGVLiLVLLAYfIglKHhhA gyeqf LMP2_MOUSE : 381- 410: dednf Lvp-IavGAALGGVLiLVLLAYfIglKRhhT gyeqf LMP2_RAT : 377- 406: dednf Lvp-IavGAALGGVLiLVLLAYfIglKRhhT gyeqf K 11: 69.1696 10( 10) L-x(1,2)-I-x(1,2)-G-[AGL]-[AIV]-L-[AGL]-G-[LV]-[LV]-x-[IL]-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] Occurences: 10(10) CD68_HUMAN : 322- 350: drsil LplIi-GLILLGLLaLVLIAFcIirRRpsA yqal CD68_MOUSE : 294- 322: dqsll LplIi-GLVLLGLLtLVLIAFcItrRRqsT yqpl LMP1_BOVIN : 374- 403: densm LipIavGGALAGLVlIVLLAYlIgrKRshA gyqti LMP1_CHICK : 380- 409: dennm LipIivGAALAGLVlIVLIAYlIgrKRshA gyqti LMP1_HUMAN : 382- 411: denst LipIavGGALAGLVlIVLIAYlVgrKRshA gyqti LMP1_MOUSE : 372- 401: dgnnm LipIavGGALAGLVlIVLIAYlIgrKRshA gyqti LMP1_RAT : 373- 402: dgnnm LipIavGGALAGLVlIVLIAYlIgrKRshA gyqti LMP2_HUMAN : 374- 403: dddnf LvpIavGAALAGVLiLVLLAYfIglKHhhA gyeqf LMP2_MOUSE : 381- 410: dednf LvpIavGAALGGVLiLVLLAYfIglKRhhT gyeqf LMP2_RAT : 377- 406: dednf LvpIavGAALGGVLiLVLLAYfIglKRhhT gyeqf L 12: 68.8189 12( 10) L-x(0,1)-P-[IL]-[AI]-[IV]-G-[AGL]-[AIV]-L-[AGL]-G-x(2,4)-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] Occurences: 12(10) CD68_HUMAN : 321- 350: sdrsi LlPLIIGLILLGllalVLIAFcIirRRpsA yqal CD68_HUMAN : 322- 350: drsil L-PLIIGLILLGllalVLIAFcIirRRpsA yqal CD68_MOUSE : 293- 322: rdqsl LlPLIIGLVLLGlltlVLIAFcItrRRqsT yqpl CD68_MOUSE : 294- 322: dqsll L-PLIIGLVLLGlltlVLIAFcItrRRqsT yqpl LMP1_BOVIN : 374- 403: densm LiPIAVGGALAGlvliVLLAYlIgrKRshA gyqti LMP1_CHICK : 380- 409: dennm LiPIIVGAALAGlvliVLIAYlIgrKRshA gyqti LMP1_HUMAN : 382- 411: denst LiPIAVGGALAGlvliVLIAYlVgrKRshA gyqti LMP1_MOUSE : 372- 401: dgnnm LiPIAVGGALAGlvliVLIAYlIgrKRshA gyqti LMP1_RAT : 373- 402: dgnnm LiPIAVGGALAGlvliVLIAYlIgrKRshA gyqti LMP2_HUMAN : 374- 403: dddnf LvPIAVGAALAGvlilVLLAYfIglKHhhA gyeqf LMP2_MOUSE : 381- 410: dednf LvPIAVGAALGGvlilVLLAYfIglKRhhT gyeqf LMP2_RAT : 377- 406: dednf LvPIAVGAALGGvlilVLLAYfIglKRhhT gyeqf M 13: 68.6696 12( 10) L-x(0,2)-I-x(1,2)-G-[AGL]-[AIV]-L-[AGL]-G-[LV]-[LV]-x-[IL]-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] Occurences: 12(10) CD68_HUMAN : 322- 350: drsil LplIi-GLILLGLLaLVLIAFcIirRRpsA yqal CD68_HUMAN : 324- 350: sillp L--Ii-GLILLGLLaLVLIAFcIirRRpsA yqal CD68_MOUSE : 294- 322: dqsll LplIi-GLVLLGLLtLVLIAFcItrRRqsT yqpl CD68_MOUSE : 296- 322: slllp L--Ii-GLVLLGLLtLVLIAFcItrRRqsT yqpl LMP1_BOVIN : 374- 403: densm LipIavGGALAGLVlIVLLAYlIgrKRshA gyqti LMP1_CHICK : 380- 409: dennm LipIivGAALAGLVlIVLIAYlIgrKRshA gyqti LMP1_HUMAN : 382- 411: denst LipIavGGALAGLVlIVLIAYlVgrKRshA gyqti LMP1_MOUSE : 372- 401: dgnnm LipIavGGALAGLVlIVLIAYlIgrKRshA gyqti LMP1_RAT : 373- 402: dgnnm LipIavGGALAGLVlIVLIAYlIgrKRshA gyqti LMP2_HUMAN : 374- 403: dddnf LvpIavGAALAGVLiLVLLAYfIglKHhhA gyeqf LMP2_MOUSE : 381- 410: dednf LvpIavGAALGGVLiLVLLAYfIglKRhhT gyeqf LMP2_RAT : 377- 406: dednf LvpIavGAALGGVLiLVLLAYfIglKRhhT gyeqf N 14: 68.6696 12( 10) L-x(1,2)-I-x(0,2)-G-[AGL]-[AIV]-L-[AGL]-G-[LV]-[LV]-x-[IL]-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] Occurences: 12(10) CD68_HUMAN : 322- 350: drsil LplIi-GLILLGLLaLVLIAFcIirRRpsA yqal CD68_HUMAN : 324- 350: sillp Li-I--GLILLGLLaLVLIAFcIirRRpsA yqal CD68_MOUSE : 294- 322: dqsll LplIi-GLVLLGLLtLVLIAFcItrRRqsT yqpl CD68_MOUSE : 296- 322: slllp Li-I--GLVLLGLLtLVLIAFcItrRRqsT yqpl LMP1_BOVIN : 374- 403: densm LipIavGGALAGLVlIVLLAYlIgrKRshA gyqti LMP1_CHICK : 380- 409: dennm LipIivGAALAGLVlIVLIAYlIgrKRshA gyqti LMP1_HUMAN : 382- 411: denst LipIavGGALAGLVlIVLIAYlVgrKRshA gyqti LMP1_MOUSE : 372- 401: dgnnm LipIavGGALAGLVlIVLIAYlIgrKRshA gyqti LMP1_RAT : 373- 402: dgnnm LipIavGGALAGLVlIVLIAYlIgrKRshA gyqti LMP2_HUMAN : 374- 403: dddnf LvpIavGAALAGVLiLVLLAYfIglKHhhA gyeqf LMP2_MOUSE : 381- 410: dednf LvpIavGAALGGVLiLVLLAYfIglKRhhT gyeqf LMP2_RAT : 377- 406: dednf LvpIavGAALGGVLiLVLLAYfIglKRhhT gyeqf O 15: 52.9935 10( 10) G-x(2,3)-L-x(0,1)-G-[LV]-[LV]-x-[IL]-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] Occurences: 10(10) CD68_HUMAN : 327- 350: lplii GlilL-GLLaLVLIAFcIirRRpsA yqal CD68_HUMAN : 327- 350: lplii Gli-LlGLLaLVLIAFcIirRRpsA yqal CD68_MOUSE : 299- 322: lplii GlvlL-GLLtLVLIAFcItrRRqsT yqpl CD68_MOUSE : 299- 322: lplii Glv-LlGLLtLVLIAFcItrRRqsT yqpl LMP1_BOVIN : 380- 403: ipiav Gga-LaGLVlIVLLAYlIgrKRshA gyqti LMP1_CHICK : 386- 409: ipiiv Gaa-LaGLVlIVLIAYlIgrKRshA gyqti LMP1_HUMAN : 388- 411: ipiav Gga-LaGLVlIVLIAYlVgrKRshA gyqti LMP1_MOUSE : 378- 401: ipiav Gga-LaGLVlIVLIAYlIgrKRshA gyqti LMP1_RAT : 379- 402: ipiav Gga-LaGLVlIVLIAYlIgrKRshA gyqti LMP2_HUMAN : 380- 403: vpiav Gaa-LaGVLiLVLLAYfIglKHhhA gyeqf LMP2_MOUSE : 387- 410: vpiav Gaa-LgGVLiLVLLAYfIglKRhhT gyeqf LMP2_RAT : 383- 406: vpiav Gaa-LgGVLiLVLLAYfIglKRhhT gyeqf P 16: 52.9935 13( 10) I-x(4,5)-L-x(0,1)-G-[LV]-[LV]-x-[IL]-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] Occurences: 13(10) CD68_HUMAN : 325- 350: illpl IiglilL-GLLaLVLIAFcIirRRpsA yqal CD68_HUMAN : 325- 350: illpl Iigli-LlGLLaLVLIAFcIirRRpsA yqal CD68_HUMAN : 326- 350: llpli Iglil-L-GLLaLVLIAFcIirRRpsA yqal CD68_MOUSE : 297- 322: lllpl IiglvlL-GLLtLVLIAFcItrRRqsT yqpl CD68_MOUSE : 297- 322: lllpl Iiglv-LlGLLtLVLIAFcItrRRqsT yqpl CD68_MOUSE : 298- 322: llpli Iglvl-L-GLLtLVLIAFcItrRRqsT yqpl LMP1_BOVIN : 377- 403: smlip IavggaLaGLVlIVLLAYlIgrKRshA gyqti LMP1_CHICK : 383- 409: nmlip IivgaaLaGLVlIVLIAYlIgrKRshA gyqti LMP1_CHICK : 384- 409: mlipi Ivgaa-LaGLVlIVLIAYlIgrKRshA gyqti LMP1_HUMAN : 385- 411: stlip IavggaLaGLVlIVLIAYlVgrKRshA gyqti LMP1_MOUSE : 375- 401: nmlip IavggaLaGLVlIVLIAYlIgrKRshA gyqti LMP1_RAT : 376- 402: nmlip IavggaLaGLVlIVLIAYlIgrKRshA gyqti LMP2_HUMAN : 377- 403: nflvp IavgaaLaGVLiLVLLAYfIglKHhhA gyeqf LMP2_MOUSE : 384- 410: nflvp IavgaaLgGVLiLVLLAYfIglKRhhT gyeqf LMP2_RAT : 380- 406: nflvp IavgaaLgGVLiLVLLAYfIglKRhhT gyeqf Q 17: 43.3394 10( 10) G-x(0,1)-L-x-L-x(0,1)-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] Occurences: 10(10) CD68_HUMAN : 332- 350: glill GlLaL-VLIAFcIirRRpsA yqal CD68_MOUSE : 304- 322: glvll GlLtL-VLIAFcItrRRqsT yqpl LMP1_BOVIN : 385- 403: ggala G-LvLiVLLAYlIgrKRshA gyqti LMP1_CHICK : 391- 409: gaala G-LvLiVLIAYlIgrKRshA gyqti LMP1_HUMAN : 393- 411: ggala G-LvLiVLIAYlVgrKRshA gyqti LMP1_MOUSE : 383- 401: ggala G-LvLiVLIAYlIgrKRshA gyqti LMP1_RAT : 384- 402: ggala G-LvLiVLIAYlIgrKRshA gyqti LMP2_HUMAN : 385- 403: gaala GvLiL-VLLAYfIglKHhhA gyeqf LMP2_MOUSE : 392- 410: gaalg GvLiL-VLLAYfIglKRhhT gyeqf LMP2_RAT : 388- 406: gaalg GvLiL-VLLAYfIglKRhhT gyeqf R 18: 43.3394 12( 10) L-x(2,3)-L-x-L-x(0,1)-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] Occurences: 12(10) CD68_HUMAN : 330- 350: iigli LlglLaL-VLIAFcIirRRpsA yqal CD68_HUMAN : 331- 350: iglil Lgl-LaL-VLIAFcIirRRpsA yqal CD68_MOUSE : 302- 322: iiglv LlglLtL-VLIAFcItrRRqsT yqpl CD68_MOUSE : 303- 322: iglvl Lgl-LtL-VLIAFcItrRRqsT yqpl LMP1_BOVIN : 383- 403: avgga Lag-LvLiVLLAYlIgrKRshA gyqti LMP1_CHICK : 389- 409: ivgaa Lag-LvLiVLIAYlIgrKRshA gyqti LMP1_HUMAN : 391- 411: avgga Lag-LvLiVLIAYlVgrKRshA gyqti LMP1_MOUSE : 381- 401: avgga Lag-LvLiVLIAYlIgrKRshA gyqti LMP1_RAT : 382- 402: avgga Lag-LvLiVLIAYlIgrKRshA gyqti LMP2_HUMAN : 383- 403: avgaa LagvLiL-VLLAYfIglKHhhA gyeqf LMP2_MOUSE : 390- 410: avgaa LggvLiL-VLLAYfIglKRhhT gyeqf LMP2_RAT : 386- 406: avgaa LggvLiL-VLLAYfIglKRhhT gyeqf S 19: 41.1597 12( 10) L-x(0,1)-P-[IL]-[AI]-[IV]-G-[AGL]-[AIV]-L-[AGL]-G-x(2,4)-V Occurences: 12(10) CD68_HUMAN : 321- 337: sdrsi LlPLIIGLILLGllalV liafc CD68_HUMAN : 322- 337: drsil L-PLIIGLILLGllalV liafc CD68_MOUSE : 293- 309: rdqsl LlPLIIGLVLLGlltlV liafc CD68_MOUSE : 294- 309: dqsll L-PLIIGLVLLGlltlV liafc LMP1_BOVIN : 374- 390: densm LiPIAVGGALAGlvliV llayl LMP1_CHICK : 380- 396: dennm LiPIIVGAALAGlvliV liayl LMP1_HUMAN : 382- 398: denst LiPIAVGGALAGlvliV liayl LMP1_MOUSE : 372- 388: dgnnm LiPIAVGGALAGlvliV liayl LMP1_RAT : 373- 389: dgnnm LiPIAVGGALAGlvliV liayl LMP2_HUMAN : 374- 390: dddnf LvPIAVGAALAGvlilV llayf LMP2_MOUSE : 381- 397: dednf LvPIAVGAALGGvlilV llayf LMP2_RAT : 377- 393: dednf LvPIAVGAALGGvlilV llayf T 20: 39.6694 10( 10) L-x-L-x(0,1)-V-L-[IL]-A-[FY]-x-[IV]-x(2)-[KR]-[HR]-x(2)-[AT] Occurences: 10(10) CD68_HUMAN : 334- 350: illgl LaL-VLIAFcIirRRpsA yqal CD68_MOUSE : 306- 322: vllgl LtL-VLIAFcItrRRqsT yqpl LMP1_BOVIN : 386- 403: galag LvLiVLLAYlIgrKRshA gyqti LMP1_CHICK : 392- 409: aalag LvLiVLIAYlIgrKRshA gyqti LMP1_HUMAN : 394- 411: galag LvLiVLIAYlVgrKRshA gyqti LMP1_MOUSE : 384- 401: galag LvLiVLIAYlIgrKRshA gyqti LMP1_RAT : 385- 402: galag LvLiVLIAYlIgrKRshA gyqti LMP2_HUMAN : 387- 403: alagv LiL-VLLAYfIglKHhhA gyeqf LMP2_MOUSE : 394- 410: alggv LiL-VLLAYfIglKRhhT gyeqf LMP2_RAT : 390- 406: alggv LiL-VLLAYfIglKRhhT gyeqf Number of patterns evaluated by Pratt:7997 Total running time: 6 seconds