------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 4 sequences from file LACY_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 4 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename LACY_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CSCB_ECOLI 415 LACY_ECOLI 417 LACY_KLEPN 416 RAFB_ECOLI 425 Pratt run started at Thu Feb 6 20:10:00 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 69.8909 4( 4) K-x-L-H-x(2)-E-x-P-x(0,1)-L-x-V-x(2,3)-F-K-Y-x(4)-F-x(4)-S-x-T-x(2)-L-x(2)-F-x(5)-L-x(5)-S 2: 65.7208 4( 4) H-x(2)-E-x-P-x(0,1)-L-x-V-x(2,3)-F-K-Y-x(4)-F-x(4)-S-x-T-x(2)-L-x(2)-F-x(5)-L-x(5)-S-x(3)-G 3: 65.7208 4( 4) L-x(3)-E-x-P-x(0,1)-L-x-V-x(2,3)-F-K-Y-x(4)-F-x(4)-S-x-T-x(2)-L-x(2)-F-x(5)-L-x(5)-S-x(3)-G 4: 61.5508 4( 4) E-x-P-x(0,1)-L-x-V-x(2,3)-F-K-Y-x(4)-F-x(4)-S-x-T-x(2)-L-x(2)-F-x(5)-L-x(5)-S-x(3)-G 5: 57.3807 4( 4) P-x(0,1)-L-x-V-x(2,3)-F-K-Y-x(4)-F-x(4)-S-x-T-x(2)-L-x(2)-F-x(5)-L-x(5)-S-x(3)-G 6: 57.3807 4( 4) M-x(3)-P-x(3)-N-R-x-G-x-K-N-x-L-L-x(1,2)-G-x(1,2)-I-M-x(2)-R-I 7: 53.2107 7( 4) L-x(0,1)-V-x(2,3)-F-K-Y-x(4)-F-x(4)-S-x-T-x(2)-L-x(2)-F-x(5)-L-x(5)-S-x(3)-G 8: 53.2107 4( 4) P-x(3)-N-R-x-G-x-K-N-x-L-L-x(1,2)-G-x(1,2)-I-M-x(2)-R-I 9: 52.2107 4( 4) E-x(3)-R-x(1,3)-F-x(0,2)-E-x-G-x(2)-R-x(2)-G-x(2)-G-x-A-x(2)-A-x(3)-G-I-x-F 10: 50.0406 4( 4) F-x(4)-G-x(3)-D-x-L-G-L-x-K-x-L-x-W-x(5)-L-x(4)-P-F 11: 49.5406 4( 4) V-x(2,3)-F-K-Y-x(4)-F-x(4)-S-x-T-x(2)-L-x(2)-F-x(5)-L-x(5)-S-x(3)-G 12: 49.5406 4( 4) R-x(3)-F-E-x-G-x(2)-R-x(2)-G-x(2)-G-x-A-x(2)-A-x(3)-G-I-x(0,1)-F 13: 49.5406 4( 4) F-x(4)-G-x(2,3)-D-x-L-G-L-x-K-x-L-x-W-x(5)-L-x(4)-P-F 14: 49.5406 4( 4) F-x(3,4)-G-x(3)-D-x-L-G-L-x-K-x-L-x-W-x(5)-L-x(4)-P-F 15: 49.0406 4( 4) V-x(0,2)-F-K-Y-x(4)-F-x(4)-S-x-T-x(2)-L-x(2)-F-x(5)-L-x(5)-S-x(3)-G 16: 49.0406 4( 4) N-R-x-G-x-K-N-x-L-L-x(1,2)-G-x(1,2)-I-M-x(2)-R-I 17: 49.0406 4( 4) F-x(3,4)-G-x(2,3)-D-x-L-G-L-x-K-x-L-x-W-x(5)-L-x(4)-P-F 18: 45.8706 4( 4) F-K-Y-x(4)-F-x(4)-S-x-T-x(2)-L-x(2)-F-x(5)-L-x(5)-S-x(3)-G 19: 45.8706 4( 4) G-x(3)-D-x-L-G-L-x-K-x-L-x-W-x(5)-L-x(4)-P-F 20: 45.3706 4( 4) F-E-x-G-x(2)-R-x(2)-G-x(2)-G-x-A-x(2)-A-x(3)-G-I-x(0,1)-F Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 133.8263 4( 4) E-[KR]-[MV]-[AS]-R-x(1,3)-F-x(0,2)-E-[FY]-G-x-[AV]-R-x(2)-G-[CS]-[FLV]-G-[WY]-A-[IL]-[CG]-A-x-[FIM]-[ATV]-G-I-[FLM]-F-[NST]-[IV]-[DNS]-[NP]-x-[FIL]-[NTV]-F-W-[ILM]-[AGV]-S-[GL]-x-[AG] B 2: 133.5979 4( 4) R-x(3)-F-E-[FY]-G-x-[AV]-R-x(2)-G-[CS]-[FLV]-G-[WY]-A-[IL]-[CG]-A-x-[FIM]-[ATV]-G-I-x(0,1)-F-[NST]-[IV]-[DNS]-[NP]-x-[FIL]-[NTV]-F-W-[ILM]-[AGV]-S-[GL]-x-[AG]-[AL]-[ILV]-[FL]-x-[LMV]-[IL] C 3: 132.3396 4( 4) P-x-[FI]-[IV]-N-R-[IV]-G-[AGP]-K-N-[AT]-L-L-x(1,2)-G-x(1,2)-I-M-[AST]-[ILV]-R-I-x-[GS]-[CS]-[AS]-[FL]-x-[TV]-[NST]-x(3)-[IV]-x-[IL]-[LV]-K-x-L-H-x-[FIL]-E-[IV]-P-[FL] D 4: 131.3627 4( 4) N-R-[IV]-G-[AGP]-K-N-[AT]-L-L-x(1,2)-G-x(1,2)-I-M-[AST]-[ILV]-R-I-x-[GS]-[CS]-[AS]-[FL]-x-[TV]-[NST]-x(3)-[IV]-x-[IL]-[LV]-K-x-L-H-x-[FIL]-E-[IV]-P-[FL]-x-[LV]-[IV]-[GS] E 5: 129.4278 4( 4) F-E-[FY]-G-x-[AV]-R-x(2)-G-[CS]-[FLV]-G-[WY]-A-[IL]-[CG]-A-x-[FIM]-[ATV]-G-I-x(0,1)-F-[NST]-[IV]-[DNS]-[NP]-x-[FIL]-[NTV]-F-W-[ILM]-[AGV]-S-[GL]-x-[AG]-[AL]-[ILV]-[FL]-x-[LMV]-[IL] F 6: 128.8972 4( 4) L-H-x-[FIL]-E-[IV]-P-x(0,1)-L-x-V-x(2,3)-F-K-Y-x-[STV]-[AGS]-x-F-[DEK]-x-[KR]-[FL]-S-[AS]-T-[ILV]-[FY]-L-[IV]-[CG]-F-x-[FIL]-x(2)-[QS]-L-[AGS]-x-[IV]-[FLV]-[LM]-S-[ATV]-x-[ATV]-G G 7: 127.5456 4( 4) F-K-Y-x-[STV]-[AGS]-x-F-[DEK]-x-[KR]-[FL]-S-[AS]-T-[ILV]-[FY]-L-[IV]-[CG]-F-x-[FIL]-x(2)-[QS]-L-[AGS]-x-[IV]-[FLV]-[LM]-S-[ATV]-x-[ATV]-G-x-[LM]-[FY]-[DE]-x(2)-G-[FY]-x-[GNQT]-[ATV]-[FY]-[FL] H 8: 126.3743 4( 4) F-x(3,4)-G-x(2,3)-D-[KR]-L-G-L-[KR]-K-x-L-[IL]-W-x-[IM]-[ST]-x-[ILM]-L-[IV]-[FLM]-x-[AG]-P-F-[FM]-[IL]-[FY]-[IV]-[FY]-[AEGS]-P-L-L-x(2)-N-[FI]-x-[AV]-G-x-[IL] I 9: 126.2905 4( 4) K-x-L-H-x-[FIL]-E-[IV]-P-x(0,1)-L-x-V-x(2,3)-F-K-Y-x-[STV]-[AGS]-x-F-[DEK]-x-[KR]-[FL]-S-[AS]-T-[ILV]-[FY]-L-[IV]-[CG]-F-x-[FIL]-x(2)-[QS]-L-[AGS]-x-[IV]-[FLV]-[LM]-S-[ATV] J 10: 124.7271 4( 4) H-x-[FIL]-E-[IV]-P-x(0,1)-L-x-V-x(2,3)-F-K-Y-x-[STV]-[AGS]-x-F-[DEK]-x-[KR]-[FL]-S-[AS]-T-[ILV]-[FY]-L-[IV]-[CG]-F-x-[FIL]-x(2)-[QS]-L-[AGS]-x-[IV]-[FLV]-[LM]-S-[ATV]-x-[ATV]-G K 11: 124.6090 4( 4) E-[IV]-P-x(0,1)-L-x-V-x(2,3)-F-K-Y-x-[STV]-[AGS]-x-F-[DEK]-x-[KR]-[FL]-S-[AS]-T-[ILV]-[FY]-L-[IV]-[CG]-F-x-[FIL]-x(2)-[QS]-L-[AGS]-x-[IV]-[FLV]-[LM]-S-[ATV]-x-[ATV]-G-x-[LM]-[FY] L 12: 124.1261 4( 4) G-x(3)-D-x-L-G-L-[KR]-K-x-L-[IL]-W-x-[IM]-[ST]-x-[ILM]-L-[IV]-[FLM]-x-[AG]-P-F-[FM]-[IL]-[FY]-[IV]-[FY]-[AEGS]-P-L-L-x(2)-N-[FI]-x-[AV]-G-x-[IL]-x-G M 13: 124.0877 4( 4) F-x(4)-G-x(3)-D-[KR]-L-G-L-[KR]-K-x-L-[IL]-W-x-[IM]-[ST]-x-[ILM]-L-[IV]-[FLM]-x-[AG]-P-F-[FM]-[IL]-[FY]-[IV]-[FY]-[AEGS]-P-L-L-x(2)-N-[FI]-x-[AV]-G N 14: 123.5877 4( 4) F-x(4)-G-x(2,3)-D-[KR]-L-G-L-[KR]-K-x-L-[IL]-W-x-[IM]-[ST]-x-[ILM]-L-[IV]-[FLM]-x-[AG]-P-F-[FM]-[IL]-[FY]-[IV]-[FY]-[AEGS]-P-L-L-x(2)-N-[FI]-x-[AV]-G O 15: 123.5877 4( 4) F-x(3,4)-G-x(3)-D-[KR]-L-G-L-[KR]-K-x-L-[IL]-W-x-[IM]-[ST]-x-[ILM]-L-[IV]-[FLM]-x-[AG]-P-F-[FM]-[IL]-[FY]-[IV]-[FY]-[AEGS]-P-L-L-x(2)-N-[FI]-x-[AV]-G P 16: 121.6766 4( 4) M-x(3)-P-x-[FI]-[IV]-N-R-[IV]-G-[AGP]-K-N-[AT]-L-L-x(1,2)-G-x(1,2)-I-M-[AST]-[ILV]-R-I-x-[GS]-[CS]-[AS]-[FL]-x-[TV]-[NST]-x(3)-[IV]-x-[IL]-[LV]-K-x-L-H-x-[FIL] Q 17: 121.6565 4( 4) V-x(0,2)-F-K-Y-x-[STV]-[AGS]-x-F-[DEK]-x-[KR]-[FL]-S-[AS]-T-[ILV]-[FY]-L-[IV]-[CG]-F-x-[FIL]-x(2)-[QS]-L-[AGS]-x-[IV]-[FLV]-[LM]-S-[ATV]-x-[ATV]-G-x-[LM]-[FY]-[DE]-x(2)-G-[FY]-x-[GNQT] R 18: 120.3847 7( 4) L-x(0,1)-V-x(2,3)-F-K-Y-x-[STV]-[AGS]-x-F-[DEK]-x-[KR]-[FL]-S-[AS]-T-[ILV]-[FY]-L-[IV]-[CG]-F-x-[FIL]-x(2)-[QS]-L-[AGS]-x-[IV]-[FLV]-[LM]-S-[ATV]-x-[ATV]-G-x-[LM]-[FY]-[DE]-x(2)-G S 19: 120.3847 4( 4) P-x(0,1)-L-x-V-x(2,3)-F-K-Y-x-[STV]-[AGS]-x-F-[DEK]-x-[KR]-[FL]-S-[AS]-T-[ILV]-[FY]-L-[IV]-[CG]-F-x-[FIL]-x(2)-[QS]-L-[AGS]-x-[IV]-[FLV]-[LM]-S-[ATV]-x-[ATV]-G-x-[LM]-[FY]-[DE] T 20: 119.8992 4( 4) V-x(2,3)-F-K-Y-x-[STV]-[AGS]-x-F-[DEK]-x-[KR]-[FL]-S-[AS]-T-[ILV]-[FY]-L-[IV]-[CG]-F-x-[FIL]-x(2)-[QS]-L-[AGS]-x-[IV]-[FLV]-[LM]-S-[ATV]-x-[ATV]-G-x-[LM]-[FY]-[DE]-x(2)-G-[FY] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 133.8263 4( 4) E-[KR]-[MV]-[AS]-R-x(1,3)-F-x(0,2)-E-[FY]-G-x-[AV]-R-x(2)-G-[CS]-[FLV]-G-[WY]-A-[IL]-[CG]-A-x-[FIM]-[ATV]-G-I-[FLM]-F-[NST]-[IV]-[DNS]-[NP]-x-[FIL]-[NTV]-F-W-[ILM]-[AGV]-S-[GL]-x-[AG] Occurences: 4(4) CSCB_ECOLI : 133- 180: ldsft EKMARnfhF--EYGtARawGSFGYAIGAfFAGIFFSISPhINFWLVSLfG avfmm CSCB_ECOLI : 133- 180: ldsft EKMARn--FhfEYGtARawGSFGYAIGAfFAGIFFSISPhINFWLVSLfG avfmm LACY_ECOLI : 130- 177: veafi EKVSRrsnF--EFGrARmfGCVGWALCAsIVGIMFTINNqFVFWLGSGcA lilav LACY_KLEPN : 135- 182: veayi ERVSRanrF--EYGkVRvsGCVGWALCAsITGILFSIDPnITFWIASGfA lilgv RAFB_ECOLI : 133- 180: ieayi ERVSRssgF--EYGkARmfGCLGWALCAtMAGILFNVDPsLVFWMGSGgA lllll B 2: 133.5979 4( 4) R-x(3)-F-E-[FY]-G-x-[AV]-R-x(2)-G-[CS]-[FLV]-G-[WY]-A-[IL]-[CG]-A-x-[FIM]-[ATV]-G-I-x(0,1)-F-[NST]-[IV]-[DNS]-[NP]-x-[FIL]-[NTV]-F-W-[ILM]-[AGV]-S-[GL]-x-[AG]-[AL]-[ILV]-[FL]-x-[LMV]-[IL] Occurences: 4(4) CSCB_ECOLI : 137- 186: tekma RnfhFEYGtARawGSFGYAIGAfFAGIfFSISPhINFWLVSLfGAVFmMI nmrfk LACY_ECOLI : 134- 183: iekvs RrsnFEFGrARmfGCVGWALCAsIVGImFTINNqFVFWLGSGcALILaVL lffak LACY_KLEPN : 139- 188: iervs RanrFEYGkVRvsGCVGWALCAsITGIlFSIDPnITFWIASGfALILgVL lwvsk RAFB_ECOLI : 137- 186: iervs RssgFEYGkARmfGCLGWALCAtMAGIlFNVDPsLVFWMGSGgALLLlLL lylar C 3: 132.3396 4( 4) P-x-[FI]-[IV]-N-R-[IV]-G-[AGP]-K-N-[AT]-L-L-x(1,2)-G-x(1,2)-I-M-[AST]-[ILV]-R-I-x-[GS]-[CS]-[AS]-[FL]-x-[TV]-[NST]-x(3)-[IV]-x-[IL]-[LV]-K-x-L-H-x-[FIL]-E-[IV]-P-[FL] Occurences: 4(4) CSCB_ECOLI : 278- 326: cmaii PfFVNRVGPKNALLi-GvvIMALRIlSCALfVNpwiIsLVKlLHaIEVPL cvisv LACY_ECOLI : 280- 328: imffa PlIINRIGGKNALLlaGt-IMSVRIiGSSFaTSaleVvILKtLHmFEVPF llvgc LACY_KLEPN : 285- 333: imfca PaIINRIGAKNALLiaGl-IMSVRIlGSSFaTSaveViILKmLHmFEIPF llvgt RAFB_ECOLI : 283- 331: imfct PwIINRIGAKNTLLvaGg-IMTIRItGSAFaTTmteVvILKmLHaLEVPF llvga D 4: 131.3627 4( 4) N-R-[IV]-G-[AGP]-K-N-[AT]-L-L-x(1,2)-G-x(1,2)-I-M-[AST]-[ILV]-R-I-x-[GS]-[CS]-[AS]-[FL]-x-[TV]-[NST]-x(3)-[IV]-x-[IL]-[LV]-K-x-L-H-x-[FIL]-E-[IV]-P-[FL]-x-[LV]-[IV]-[GS] Occurences: 4(4) CSCB_ECOLI : 282- 330: ipffv NRVGPKNALLi-GvvIMALRIlSCALfVNpwiIsLVKlLHaIEVPLcVIS vfkys LACY_ECOLI : 284- 332: aplii NRIGGKNALLlaGt-IMSVRIiGSSFaTSaleVvILKtLHmFEVPFlLVG cfkyi LACY_KLEPN : 289- 337: apaii NRIGAKNALLiaGl-IMSVRIlGSSFaTSaveViILKmLHmFEIPFlLVG tfkyi RAFB_ECOLI : 287- 335: tpwii NRIGAKNTLLvaGg-IMTIRItGSAFaTTmteVvILKmLHaLEVPFlLVG afkyi E 5: 129.4278 4( 4) F-E-[FY]-G-x-[AV]-R-x(2)-G-[CS]-[FLV]-G-[WY]-A-[IL]-[CG]-A-x-[FIM]-[ATV]-G-I-x(0,1)-F-[NST]-[IV]-[DNS]-[NP]-x-[FIL]-[NTV]-F-W-[ILM]-[AGV]-S-[GL]-x-[AG]-[AL]-[ILV]-[FL]-x-[LMV]-[IL] Occurences: 4(4) CSCB_ECOLI : 141- 186: arnfh FEYGtARawGSFGYAIGAfFAGIfFSISPhINFWLVSLfGAVFmMI nmrfk LACY_ECOLI : 138- 183: srrsn FEFGrARmfGCVGWALCAsIVGImFTINNqFVFWLGSGcALILaVL lffak LACY_KLEPN : 143- 188: sranr FEYGkVRvsGCVGWALCAsITGIlFSIDPnITFWIASGfALILgVL lwvsk RAFB_ECOLI : 141- 186: srssg FEYGkARmfGCLGWALCAtMAGIlFNVDPsLVFWMGSGgALLLlLL lylar F 6: 128.8972 4( 4) L-H-x-[FIL]-E-[IV]-P-x(0,1)-L-x-V-x(2,3)-F-K-Y-x-[STV]-[AGS]-x-F-[DEK]-x-[KR]-[FL]-S-[AS]-T-[ILV]-[FY]-L-[IV]-[CG]-F-x-[FIL]-x(2)-[QS]-L-[AGS]-x-[IV]-[FLV]-[LM]-S-[ATV]-x-[ATV]-G Occurences: 4(4) CSCB_ECOLI : 319- 368: slvkl LHaIEVP-LcVisvFKYsVAnFDkRLSSTIFLIGFqIasSLGiVLLSTpTG ilfdh LACY_ECOLI : 321- 370: vilkt LHmFEVPfLlVgc-FKYiTSqFEvRFSATIYLVCFcFfkQLAmIFMSVlAG nmyes LACY_KLEPN : 326- 375: iilkm LHmFEIPfLlVgt-FKYiSSaFKgKLSATLFLIGFnLskQLSsVVLSAwVG rmydt RAFB_ECOLI : 324- 373: vilkm LHaLEVPfLlVga-FKYiTGvFDtRLSATVYLIGFqFskQLAaILLSTfAG hlydr G 7: 127.5456 4( 4) F-K-Y-x-[STV]-[AGS]-x-F-[DEK]-x-[KR]-[FL]-S-[AS]-T-[ILV]-[FY]-L-[IV]-[CG]-F-x-[FIL]-x(2)-[QS]-L-[AGS]-x-[IV]-[FLV]-[LM]-S-[ATV]-x-[ATV]-G-x-[LM]-[FY]-[DE]-x(2)-G-[FY]-x-[GNQT]-[ATV]-[FY]-[FL] Occurences: 4(4) CSCB_ECOLI : 332- 381: cvisv FKYsVAnFDkRLSSTIFLIGFqIasSLGiVLLSTpTGiLFDhaGYqTVFF aisgi LACY_ECOLI : 334- 383: llvgc FKYiTSqFEvRFSATIYLVCFcFfkQLAmIFMSVlAGnMYEsiGFqGAYL vlglv LACY_KLEPN : 339- 388: llvgt FKYiSSaFKgKLSATLFLIGFnLskQLSsVVLSAwVGrMYDtvGFhQAYL ilgci RAFB_ECOLI : 337- 386: llvga FKYiTGvFDtRLSATVYLIGFqFskQLAaILLSTfAGhLYDrmGFqNTYF vlgmi H 8: 126.3743 4( 4) F-x(3,4)-G-x(2,3)-D-[KR]-L-G-L-[KR]-K-x-L-[IL]-W-x-[IM]-[ST]-x-[ILM]-L-[IV]-[FLM]-x-[AG]-P-F-[FM]-[IL]-[FY]-[IV]-[FY]-[AEGS]-P-L-L-x(2)-N-[FI]-x-[AV]-G-x-[IL] Occurences: 4(4) CSCB_ECOLI : 62- 111: ftsil FmmfyGivqDKLGLKKpLIWcMSfILVLtGPFMIYVYEPLLqsNFsVGlI lgalf LACY_ECOLI : 59- 108: lfsll FqplfGllsDKLGLRKyLLWiITgMLVMfAPFFIFIFGPLLqyNIlVGsI vggiy LACY_KLEPN : 64- 113: lfaii FqpvfGlisDKLGLRKhLLWtITiLLILfAPFFIFVFSPLLqmNImAGaL vggvy RAFB_ECOLI : 62- 111: lfais FqpllGvisDRLGLKKnLIWsISlLLVFfAPFFLYVFAPLLhlNIwAGaL tggvf I 9: 126.2905 4( 4) K-x-L-H-x-[FIL]-E-[IV]-P-x(0,1)-L-x-V-x(2,3)-F-K-Y-x-[STV]-[AGS]-x-F-[DEK]-x-[KR]-[FL]-S-[AS]-T-[ILV]-[FY]-L-[IV]-[CG]-F-x-[FIL]-x(2)-[QS]-L-[AGS]-x-[IV]-[FLV]-[LM]-S-[ATV] Occurences: 4(4) CSCB_ECOLI : 317- 365: iislv KlLHaIEVP-LcVisvFKYsVAnFDkRLSSTIFLIGFqIasSLGiVLLST ptgil LACY_ECOLI : 319- 367: evvil KtLHmFEVPfLlVgc-FKYiTSqFEvRFSATIYLVCFcFfkQLAmIFMSV lagnm LACY_KLEPN : 324- 372: eviil KmLHmFEIPfLlVgt-FKYiSSaFKgKLSATLFLIGFnLskQLSsVVLSA wvgrm RAFB_ECOLI : 322- 370: evvil KmLHaLEVPfLlVga-FKYiTGvFDtRLSATVYLIGFqFskQLAaILLST faghl J 10: 124.7271 4( 4) H-x-[FIL]-E-[IV]-P-x(0,1)-L-x-V-x(2,3)-F-K-Y-x-[STV]-[AGS]-x-F-[DEK]-x-[KR]-[FL]-S-[AS]-T-[ILV]-[FY]-L-[IV]-[CG]-F-x-[FIL]-x(2)-[QS]-L-[AGS]-x-[IV]-[FLV]-[LM]-S-[ATV]-x-[ATV]-G Occurences: 4(4) CSCB_ECOLI : 320- 368: lvkll HaIEVP-LcVisvFKYsVAnFDkRLSSTIFLIGFqIasSLGiVLLSTpTG ilfdh LACY_ECOLI : 322- 370: ilktl HmFEVPfLlVgc-FKYiTSqFEvRFSATIYLVCFcFfkQLAmIFMSVlAG nmyes LACY_KLEPN : 327- 375: ilkml HmFEIPfLlVgt-FKYiSSaFKgKLSATLFLIGFnLskQLSsVVLSAwVG rmydt RAFB_ECOLI : 325- 373: ilkml HaLEVPfLlVga-FKYiTGvFDtRLSATVYLIGFqFskQLAaILLSTfAG hlydr K 11: 124.6090 4( 4) E-[IV]-P-x(0,1)-L-x-V-x(2,3)-F-K-Y-x-[STV]-[AGS]-x-F-[DEK]-x-[KR]-[FL]-S-[AS]-T-[ILV]-[FY]-L-[IV]-[CG]-F-x-[FIL]-x(2)-[QS]-L-[AGS]-x-[IV]-[FLV]-[LM]-S-[ATV]-x-[ATV]-G-x-[LM]-[FY] Occurences: 4(4) CSCB_ECOLI : 323- 371: llhai EVP-LcVisvFKYsVAnFDkRLSSTIFLIGFqIasSLGiVLLSTpTGiLF dhagy LACY_ECOLI : 325- 373: tlhmf EVPfLlVgc-FKYiTSqFEvRFSATIYLVCFcFfkQLAmIFMSVlAGnMY esigf LACY_KLEPN : 330- 378: mlhmf EIPfLlVgt-FKYiSSaFKgKLSATLFLIGFnLskQLSsVVLSAwVGrMY dtvgf RAFB_ECOLI : 328- 376: mlhal EVPfLlVga-FKYiTGvFDtRLSATVYLIGFqFskQLAaILLSTfAGhLY drmgf L 12: 124.1261 4( 4) G-x(3)-D-x-L-G-L-[KR]-K-x-L-[IL]-W-x-[IM]-[ST]-x-[ILM]-L-[IV]-[FLM]-x-[AG]-P-F-[FM]-[IL]-[FY]-[IV]-[FY]-[AEGS]-P-L-L-x(2)-N-[FI]-x-[AV]-G-x-[IL]-x-G Occurences: 4(4) CSCB_ECOLI : 67- 113: fmmfy GivqDkLGLKKpLIWcMSfILVLtGPFMIYVYEPLLqsNFsVGlIlG alffg LACY_ECOLI : 64- 110: fqplf GllsDkLGLRKyLLWiITgMLVMfAPFFIFIFGPLLqyNIlVGsIvG giylg LACY_KLEPN : 69- 115: fqpvf GlisDkLGLRKhLLWtITiLLILfAPFFIFVFSPLLqmNImAGaLvG gvylg RAFB_ECOLI : 67- 113: fqpll GvisDrLGLKKnLIWsISlLLVFfAPFFLYVFAPLLhlNIwAGaLtG gvfig M 13: 124.0877 4( 4) F-x(4)-G-x(3)-D-[KR]-L-G-L-[KR]-K-x-L-[IL]-W-x-[IM]-[ST]-x-[ILM]-L-[IV]-[FLM]-x-[AG]-P-F-[FM]-[IL]-[FY]-[IV]-[FY]-[AEGS]-P-L-L-x(2)-N-[FI]-x-[AV]-G Occurences: 4(4) CSCB_ECOLI : 62- 109: ftsil FmmfyGivqDKLGLKKpLIWcMSfILVLtGPFMIYVYEPLLqsNFsVG lilga LACY_ECOLI : 59- 106: lfsll FqplfGllsDKLGLRKyLLWiITgMLVMfAPFFIFIFGPLLqyNIlVG sivgg LACY_KLEPN : 64- 111: lfaii FqpvfGlisDKLGLRKhLLWtITiLLILfAPFFIFVFSPLLqmNImAG alvgg RAFB_ECOLI : 62- 109: lfais FqpllGvisDRLGLKKnLIWsISlLLVFfAPFFLYVFAPLLhlNIwAG altgg N 14: 123.5877 4( 4) F-x(4)-G-x(2,3)-D-[KR]-L-G-L-[KR]-K-x-L-[IL]-W-x-[IM]-[ST]-x-[ILM]-L-[IV]-[FLM]-x-[AG]-P-F-[FM]-[IL]-[FY]-[IV]-[FY]-[AEGS]-P-L-L-x(2)-N-[FI]-x-[AV]-G Occurences: 4(4) CSCB_ECOLI : 62- 109: ftsil FmmfyGivqDKLGLKKpLIWcMSfILVLtGPFMIYVYEPLLqsNFsVG lilga LACY_ECOLI : 59- 106: lfsll FqplfGllsDKLGLRKyLLWiITgMLVMfAPFFIFIFGPLLqyNIlVG sivgg LACY_KLEPN : 64- 111: lfaii FqpvfGlisDKLGLRKhLLWtITiLLILfAPFFIFVFSPLLqmNImAG alvgg RAFB_ECOLI : 62- 109: lfais FqpllGvisDRLGLKKnLIWsISlLLVFfAPFFLYVFAPLLhlNIwAG altgg O 15: 123.5877 4( 4) F-x(3,4)-G-x(3)-D-[KR]-L-G-L-[KR]-K-x-L-[IL]-W-x-[IM]-[ST]-x-[ILM]-L-[IV]-[FLM]-x-[AG]-P-F-[FM]-[IL]-[FY]-[IV]-[FY]-[AEGS]-P-L-L-x(2)-N-[FI]-x-[AV]-G Occurences: 4(4) CSCB_ECOLI : 62- 109: ftsil FmmfyGivqDKLGLKKpLIWcMSfILVLtGPFMIYVYEPLLqsNFsVG lilga LACY_ECOLI : 59- 106: lfsll FqplfGllsDKLGLRKyLLWiITgMLVMfAPFFIFIFGPLLqyNIlVG sivgg LACY_KLEPN : 64- 111: lfaii FqpvfGlisDKLGLRKhLLWtITiLLILfAPFFIFVFSPLLqmNImAG alvgg RAFB_ECOLI : 62- 109: lfais FqpllGvisDRLGLKKnLIWsISlLLVFfAPFFLYVFAPLLhlNIwAG altgg P 16: 121.6766 4( 4) M-x(3)-P-x-[FI]-[IV]-N-R-[IV]-G-[AGP]-K-N-[AT]-L-L-x(1,2)-G-x(1,2)-I-M-[AST]-[ILV]-R-I-x-[GS]-[CS]-[AS]-[FL]-x-[TV]-[NST]-x(3)-[IV]-x-[IL]-[LV]-K-x-L-H-x-[FIL] Occurences: 4(4) CSCB_ECOLI : 274- 322: lealc MaiiPfFVNRVGPKNALLi-GvvIMALRIlSCALfVNpwiIsLVKlLHaI evplc LACY_ECOLI : 276- 324: lnasi MffaPlIINRIGGKNALLlaGt-IMSVRIiGSSFaTSaleVvILKtLHmF evpfl LACY_KLEPN : 281- 329: lnali MfcaPaIINRIGAKNALLiaGl-IMSVRIlGSSFaTSaveViILKmLHmF eipfl RAFB_ECOLI : 279- 327: cnaii MfctPwIINRIGAKNTLLvaGg-IMTIRItGSAFaTTmteVvILKmLHaL evpfl Q 17: 121.6565 4( 4) V-x(0,2)-F-K-Y-x-[STV]-[AGS]-x-F-[DEK]-x-[KR]-[FL]-S-[AS]-T-[ILV]-[FY]-L-[IV]-[CG]-F-x-[FIL]-x(2)-[QS]-L-[AGS]-x-[IV]-[FLV]-[LM]-S-[ATV]-x-[ATV]-G-x-[LM]-[FY]-[DE]-x(2)-G-[FY]-x-[GNQT] Occurences: 4(4) CSCB_ECOLI : 331- 378: lcvis V--FKYsVAnFDkRLSSTIFLIGFqIasSLGiVLLSTpTGiLFDhaGYqT vffai LACY_ECOLI : 331- 380: vpfll VgcFKYiTSqFEvRFSATIYLVCFcFfkQLAmIFMSVlAGnMYEsiGFqG aylvl LACY_KLEPN : 336- 385: ipfll VgtFKYiSSaFKgKLSATLFLIGFnLskQLSsVVLSAwVGrMYDtvGFhQ aylil RAFB_ECOLI : 334- 383: vpfll VgaFKYiTGvFDtRLSATVYLIGFqFskQLAaILLSTfAGhLYDrmGFqN tyfvl R 18: 120.3847 7( 4) L-x(0,1)-V-x(2,3)-F-K-Y-x-[STV]-[AGS]-x-F-[DEK]-x-[KR]-[FL]-S-[AS]-T-[ILV]-[FY]-L-[IV]-[CG]-F-x-[FIL]-x(2)-[QS]-L-[AGS]-x-[IV]-[FLV]-[LM]-S-[ATV]-x-[ATV]-G-x-[LM]-[FY]-[DE]-x(2)-G Occurences: 7(4) CSCB_ECOLI : 326- 375: aievp LcVisvFKYsVAnFDkRLSSTIFLIGFqIasSLGiVLLSTpTGiLFDhaG yqtvf LACY_ECOLI : 329- 377: fevpf LlVgc-FKYiTSqFEvRFSATIYLVCFcFfkQLAmIFMSVlAGnMYEsiG fqgay LACY_ECOLI : 330- 377: evpfl L-Vgc-FKYiTSqFEvRFSATIYLVCFcFfkQLAmIFMSVlAGnMYEsiG fqgay LACY_KLEPN : 334- 382: feipf LlVgt-FKYiSSaFKgKLSATLFLIGFnLskQLSsVVLSAwVGrMYDtvG fhqay LACY_KLEPN : 335- 382: eipfl L-Vgt-FKYiSSaFKgKLSATLFLIGFnLskQLSsVVLSAwVGrMYDtvG fhqay RAFB_ECOLI : 332- 380: levpf LlVga-FKYiTGvFDtRLSATVYLIGFqFskQLAaILLSTfAGhLYDrmG fqnty RAFB_ECOLI : 333- 380: evpfl L-Vga-FKYiTGvFDtRLSATVYLIGFqFskQLAaILLSTfAGhLYDrmG fqnty S 19: 120.3847 4( 4) P-x(0,1)-L-x-V-x(2,3)-F-K-Y-x-[STV]-[AGS]-x-F-[DEK]-x-[KR]-[FL]-S-[AS]-T-[ILV]-[FY]-L-[IV]-[CG]-F-x-[FIL]-x(2)-[QS]-L-[AGS]-x-[IV]-[FLV]-[LM]-S-[ATV]-x-[ATV]-G-x-[LM]-[FY]-[DE] Occurences: 4(4) CSCB_ECOLI : 325- 372: haiev P-LcVisvFKYsVAnFDkRLSSTIFLIGFqIasSLGiVLLSTpTGiLFD hagyq LACY_ECOLI : 327- 374: hmfev PfLlVgc-FKYiTSqFEvRFSATIYLVCFcFfkQLAmIFMSVlAGnMYE sigfq LACY_KLEPN : 332- 379: hmfei PfLlVgt-FKYiSSaFKgKLSATLFLIGFnLskQLSsVVLSAwVGrMYD tvgfh RAFB_ECOLI : 330- 377: halev PfLlVga-FKYiTGvFDtRLSATVYLIGFqFskQLAaILLSTfAGhLYD rmgfq T 20: 119.8992 4( 4) V-x(2,3)-F-K-Y-x-[STV]-[AGS]-x-F-[DEK]-x-[KR]-[FL]-S-[AS]-T-[ILV]-[FY]-L-[IV]-[CG]-F-x-[FIL]-x(2)-[QS]-L-[AGS]-x-[IV]-[FLV]-[LM]-S-[ATV]-x-[ATV]-G-x-[LM]-[FY]-[DE]-x(2)-G-[FY] Occurences: 4(4) CSCB_ECOLI : 328- 376: evplc VisvFKYsVAnFDkRLSSTIFLIGFqIasSLGiVLLSTpTGiLFDhaGY qtvff LACY_ECOLI : 331- 378: vpfll Vgc-FKYiTSqFEvRFSATIYLVCFcFfkQLAmIFMSVlAGnMYEsiGF qgayl LACY_KLEPN : 336- 383: ipfll Vgt-FKYiSSaFKgKLSATLFLIGFnLskQLSsVVLSAwVGrMYDtvGF hqayl RAFB_ECOLI : 334- 381: vpfll Vga-FKYiTGvFDtRLSATVYLIGFqFskQLAaILLSTfAGhLYDrmGF qntyf Number of patterns evaluated by Pratt:27788 Total running time: 9 seconds