------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 6 sequences from file KINESIN_LIGHT PATTERN CONSERVATION: CM: min Nr of Seqs to Match 6 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename KINESIN_LIGHT.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: KNLC_CAEEL 540 KNLC_DROME 508 KNLC_HUMAN 569 KNLC_LOLPE 571 KNLC_RAT 556 KNLC_STRPU 686 Pratt run started at Thu Feb 6 20:07:46 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 200.1623 6( 6) L-V-I-Q-Y-A-S-Q-x-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-x-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L-V-Y-R-D-Q 2: 200.1623 6( 6) N-L-V-I-Q-Y-A-S-Q-x-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-x-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L-V-Y-R-D 3: 200.1623 6( 6) H-N-L-V-I-Q-Y-A-S-Q-x-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-x-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L-V-Y-R 4: 200.1623 6( 6) L-H-N-L-V-I-Q-Y-A-S-Q-x-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-x-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L-V-Y 5: 200.1623 6( 6) T-L-H-N-L-V-I-Q-Y-A-S-Q-x-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-x-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L-V 6: 200.1623 6( 6) R-T-L-H-N-L-V-I-Q-Y-A-S-Q-x-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-x-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L 7: 200.1623 6( 6) L-R-T-L-H-N-L-V-I-Q-Y-A-S-Q-x-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-x-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A 8: 200.1623 6( 6) R-L-R-T-L-H-N-L-V-I-Q-Y-A-S-Q-x-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-x-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L 9: 200.1623 6( 6) A-R-L-R-T-L-H-N-L-V-I-Q-Y-A-S-Q-x-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-x-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I 10: 200.1623 6( 6) P-A-R-L-R-T-L-H-N-L-V-I-Q-Y-A-S-Q-x-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-x-T-S-G-H-D-H-P-D-V-A-T-M-L-N 11: 200.1623 6( 6) I-P-A-R-L-R-T-L-H-N-L-V-I-Q-Y-A-S-Q-x-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-x-T-S-G-H-D-H-P-D-V-A-T-M-L 12: 200.1623 6( 6) E-I-P-A-R-L-R-T-L-H-N-L-V-I-Q-Y-A-S-Q-x-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-x-T-S-G-H-D-H-P-D-V-A-T-M 13: 195.9923 6( 6) Y-A-S-Q-x-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-x-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L-V-Y-R-D-Q-x-K-Y-K 14: 195.9923 6( 6) Q-Y-A-S-Q-x-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-x-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L-V-Y-R-D-Q-x-K-Y 15: 195.9923 6( 6) I-Q-Y-A-S-Q-x-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-x-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L-V-Y-R-D-Q-x-K 16: 195.9923 6( 6) V-I-Q-Y-A-S-Q-x-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-x-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L-V-Y-R-D-Q 17: 195.9923 6( 6) G-x-E-I-P-A-R-L-R-T-L-H-N-L-V-I-Q-Y-A-S-Q-x-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-x-T-S-G-H-D-H-P-D-V-A 18: 191.8223 6( 6) Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-x-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L-V-Y-R-D-Q-x-K-Y-K-x-A-x-N-L-L 19: 191.8223 6( 6) R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-x-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L-V-Y-R-D-Q-x-K-Y-K-x-A-x-N-L 20: 191.8223 6( 6) S-Q-x-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-x-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L-V-Y-R-D-Q-x-K-Y-K-x-A Warning: upper limit on pattern length (components) reached -- to check if longer patterns may be conserved. -- rerun Pratt with increased C and L values Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 206.5910 6( 6) L-V-I-Q-Y-A-S-Q-[GS]-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L-V-Y-R-D-Q B 2: 206.5910 6( 6) N-L-V-I-Q-Y-A-S-Q-[GS]-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L-V-Y-R-D C 3: 206.5910 6( 6) H-N-L-V-I-Q-Y-A-S-Q-[GS]-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L-V-Y-R D 4: 206.5910 6( 6) L-H-N-L-V-I-Q-Y-A-S-Q-[GS]-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L-V-Y E 5: 206.5910 6( 6) T-L-H-N-L-V-I-Q-Y-A-S-Q-[GS]-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L-V F 6: 206.5910 6( 6) R-T-L-H-N-L-V-I-Q-Y-A-S-Q-[GS]-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L G 7: 206.5910 6( 6) L-R-T-L-H-N-L-V-I-Q-Y-A-S-Q-[GS]-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A H 8: 206.5910 6( 6) R-L-R-T-L-H-N-L-V-I-Q-Y-A-S-Q-[GS]-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L I 9: 206.5910 6( 6) A-R-L-R-T-L-H-N-L-V-I-Q-Y-A-S-Q-[GS]-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I J 10: 206.5910 6( 6) P-A-R-L-R-T-L-H-N-L-V-I-Q-Y-A-S-Q-[GS]-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M-L-N K 11: 206.5910 6( 6) I-P-A-R-L-R-T-L-H-N-L-V-I-Q-Y-A-S-Q-[GS]-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M-L L 12: 206.5910 6( 6) E-I-P-A-R-L-R-T-L-H-N-L-V-I-Q-Y-A-S-Q-[GS]-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M M 13: 205.6941 6( 6) Y-A-S-Q-[GS]-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L-V-Y-R-D-Q-[GN]-K-Y-K N 14: 205.6941 6( 6) Q-Y-A-S-Q-[GS]-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L-V-Y-R-D-Q-[GN]-K-Y O 15: 205.6941 6( 6) I-Q-Y-A-S-Q-[GS]-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L-V-Y-R-D-Q-[GN]-K P 16: 205.6941 6( 6) V-I-Q-Y-A-S-Q-[GS]-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L-V-Y-R-D-Q-[GN] Q 17: 204.6946 6( 6) S-Q-[GS]-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L-V-Y-R-D-Q-[GN]-K-Y-K-[DE]-A R 18: 204.6842 6( 6) Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L-V-Y-R-D-Q-[GN]-K-Y-K-[DE]-A-[AG]-N-L-L S 19: 204.6842 6( 6) R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L-V-Y-R-D-Q-[GN]-K-Y-K-[DE]-A-[AG]-N-L T 20: 202.4210 6( 6) G-x-E-I-P-A-R-L-R-T-L-H-N-L-V-I-Q-Y-A-S-Q-[GS]-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A Best patterns with alignements: fitness hits(seqs) Pattern A 1: 206.5910 6( 6) L-V-I-Q-Y-A-S-Q-[GS]-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L-V-Y-R-D-Q Occurences: 6(6) KNLC_CAEEL : 212- 261: rtlhn LVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ nkyke KNLC_DROME : 192- 241: rtlhn LVIQYASQGRYEVAVPLCKQALEDLERTSGHDHPDVATMLNILALVYRDQ nkyke KNLC_HUMAN : 215- 264: rtlhn LVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ nkykd KNLC_LOLPE : 226- 275: rtlhn LVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ gkyke KNLC_RAT : 215- 264: rtlhn LVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ nkykd KNLC_STRPU : 221- 270: rtlhn LVIQYASQSRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ nkyke B 2: 206.5910 6( 6) N-L-V-I-Q-Y-A-S-Q-[GS]-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L-V-Y-R-D Occurences: 6(6) KNLC_CAEEL : 211- 260: lrtlh NLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD qnkyk KNLC_DROME : 191- 240: lrtlh NLVIQYASQGRYEVAVPLCKQALEDLERTSGHDHPDVATMLNILALVYRD qnkyk KNLC_HUMAN : 214- 263: lrtlh NLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD qnkyk KNLC_LOLPE : 225- 274: lrtlh NLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD qgkyk KNLC_RAT : 214- 263: lrtlh NLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD qnkyk KNLC_STRPU : 220- 269: lrtlh NLVIQYASQSRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD qnkyk C 3: 206.5910 6( 6) H-N-L-V-I-Q-Y-A-S-Q-[GS]-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L-V-Y-R Occurences: 6(6) KNLC_CAEEL : 210- 259: rlrtl HNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR dqnky KNLC_DROME : 190- 239: rlrtl HNLVIQYASQGRYEVAVPLCKQALEDLERTSGHDHPDVATMLNILALVYR dqnky KNLC_HUMAN : 213- 262: rlrtl HNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR dqnky KNLC_LOLPE : 224- 273: rlrtl HNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR dqgky KNLC_RAT : 213- 262: rlrtl HNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR dqnky KNLC_STRPU : 219- 268: rlrtl HNLVIQYASQSRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR dqnky D 4: 206.5910 6( 6) L-H-N-L-V-I-Q-Y-A-S-Q-[GS]-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L-V-Y Occurences: 6(6) KNLC_CAEEL : 209- 258: arlrt LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVY rdqnk KNLC_DROME : 189- 238: arlrt LHNLVIQYASQGRYEVAVPLCKQALEDLERTSGHDHPDVATMLNILALVY rdqnk KNLC_HUMAN : 212- 261: arlrt LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVY rdqnk KNLC_LOLPE : 223- 272: arlrt LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVY rdqgk KNLC_RAT : 212- 261: arlrt LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVY rdqnk KNLC_STRPU : 218- 267: arlrt LHNLVIQYASQSRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVY rdqnk E 5: 206.5910 6( 6) T-L-H-N-L-V-I-Q-Y-A-S-Q-[GS]-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L-V Occurences: 6(6) KNLC_CAEEL : 208- 257: parlr TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALV yrdqn KNLC_DROME : 188- 237: parlr TLHNLVIQYASQGRYEVAVPLCKQALEDLERTSGHDHPDVATMLNILALV yrdqn KNLC_HUMAN : 211- 260: parlr TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALV yrdqn KNLC_LOLPE : 222- 271: parlr TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALV yrdqg KNLC_RAT : 211- 260: parlr TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALV yrdqn KNLC_STRPU : 217- 266: parlr TLHNLVIQYASQSRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALV yrdqn F 6: 206.5910 6( 6) R-T-L-H-N-L-V-I-Q-Y-A-S-Q-[GS]-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L Occurences: 6(6) KNLC_CAEEL : 207- 256: iparl RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILAL vyrdq KNLC_DROME : 187- 236: iparl RTLHNLVIQYASQGRYEVAVPLCKQALEDLERTSGHDHPDVATMLNILAL vyrdq KNLC_HUMAN : 210- 259: iparl RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILAL vyrdq KNLC_LOLPE : 221- 270: iparl RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILAL vyrdq KNLC_RAT : 210- 259: iparl RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILAL vyrdq KNLC_STRPU : 216- 265: iparl RTLHNLVIQYASQSRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILAL vyrdq G 7: 206.5910 6( 6) L-R-T-L-H-N-L-V-I-Q-Y-A-S-Q-[GS]-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A Occurences: 6(6) KNLC_CAEEL : 206- 255: eipar LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILA lvyrd KNLC_DROME : 186- 235: eipar LRTLHNLVIQYASQGRYEVAVPLCKQALEDLERTSGHDHPDVATMLNILA lvyrd KNLC_HUMAN : 209- 258: eipar LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILA lvyrd KNLC_LOLPE : 220- 269: eipar LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILA lvyrd KNLC_RAT : 209- 258: eipar LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILA lvyrd KNLC_STRPU : 215- 264: eipar LRTLHNLVIQYASQSRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILA lvyrd H 8: 206.5910 6( 6) R-L-R-T-L-H-N-L-V-I-Q-Y-A-S-Q-[GS]-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L Occurences: 6(6) KNLC_CAEEL : 205- 254: yeipa RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNIL alvyr KNLC_DROME : 185- 234: yeipa RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLERTSGHDHPDVATMLNIL alvyr KNLC_HUMAN : 208- 257: yeipa RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNIL alvyr KNLC_LOLPE : 219- 268: ceipa RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNIL alvyr KNLC_RAT : 208- 257: yeipa RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNIL alvyr KNLC_STRPU : 214- 263: yeipa RLRTLHNLVIQYASQSRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNIL alvyr I 9: 206.5910 6( 6) A-R-L-R-T-L-H-N-L-V-I-Q-Y-A-S-Q-[GS]-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I Occurences: 6(6) KNLC_CAEEL : 204- 253: gyeip ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNI lalvy KNLC_DROME : 184- 233: gyeip ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLERTSGHDHPDVATMLNI lalvy KNLC_HUMAN : 207- 256: gyeip ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNI lalvy KNLC_LOLPE : 218- 267: gceip ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNI lalvy KNLC_RAT : 207- 256: gyeip ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNI lalvy KNLC_STRPU : 213- 262: gyeip ARLRTLHNLVIQYASQSRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNI lalvy J 10: 206.5910 6( 6) P-A-R-L-R-T-L-H-N-L-V-I-Q-Y-A-S-Q-[GS]-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M-L-N Occurences: 6(6) KNLC_CAEEL : 203- 252: vgyei PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLN ilalv KNLC_DROME : 183- 232: sgyei PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLERTSGHDHPDVATMLN ilalv KNLC_HUMAN : 206- 255: ggyei PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLN ilalv KNLC_LOLPE : 217- 266: ggcei PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLN ilalv KNLC_RAT : 206- 255: ggyei PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLN ilalv KNLC_STRPU : 212- 261: ggyei PARLRTLHNLVIQYASQSRYEVAVPLCKQALEDLEKTSGHDHPDVATMLN ilalv K 11: 206.5910 6( 6) I-P-A-R-L-R-T-L-H-N-L-V-I-Q-Y-A-S-Q-[GS]-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M-L Occurences: 6(6) KNLC_CAEEL : 202- 251: nvgye IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATML nilal KNLC_DROME : 182- 231: tsgye IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLERTSGHDHPDVATML nilal KNLC_HUMAN : 205- 254: qggye IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATML nilal KNLC_LOLPE : 216- 265: sggce IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATML nilal KNLC_RAT : 205- 254: qggye IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATML nilal KNLC_STRPU : 211- 260: aggye IPARLRTLHNLVIQYASQSRYEVAVPLCKQALEDLEKTSGHDHPDVATML nilal L 12: 206.5910 6( 6) E-I-P-A-R-L-R-T-L-H-N-L-V-I-Q-Y-A-S-Q-[GS]-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M Occurences: 6(6) KNLC_CAEEL : 201- 250: anvgy EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATM lnila KNLC_DROME : 181- 230: qtsgy EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLERTSGHDHPDVATM lnila KNLC_HUMAN : 204- 253: qqggy EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATM lnila KNLC_LOLPE : 215- 264: asggc EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATM lnila KNLC_RAT : 204- 253: qqggy EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATM lnila KNLC_STRPU : 210- 259: aaggy EIPARLRTLHNLVIQYASQSRYEVAVPLCKQALEDLEKTSGHDHPDVATM lnila M 13: 205.6941 6( 6) Y-A-S-Q-[GS]-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L-V-Y-R-D-Q-[GN]-K-Y-K Occurences: 6(6) KNLC_CAEEL : 216- 265: nlviq YASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK eaanl KNLC_DROME : 196- 245: nlviq YASQGRYEVAVPLCKQALEDLERTSGHDHPDVATMLNILALVYRDQNKYK eaanl KNLC_HUMAN : 219- 268: nlviq YASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK daanl KNLC_LOLPE : 230- 279: nlviq YASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQGKYK eaanl KNLC_RAT : 219- 268: nlviq YASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK daanl KNLC_STRPU : 225- 274: nlviq YASQSRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK eagnl N 14: 205.6941 6( 6) Q-Y-A-S-Q-[GS]-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L-V-Y-R-D-Q-[GN]-K-Y Occurences: 6(6) KNLC_CAEEL : 215- 264: hnlvi QYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKY keaan KNLC_DROME : 195- 244: hnlvi QYASQGRYEVAVPLCKQALEDLERTSGHDHPDVATMLNILALVYRDQNKY keaan KNLC_HUMAN : 218- 267: hnlvi QYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKY kdaan KNLC_LOLPE : 229- 278: hnlvi QYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQGKY keaan KNLC_RAT : 218- 267: hnlvi QYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKY kdaan KNLC_STRPU : 224- 273: hnlvi QYASQSRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKY keagn O 15: 205.6941 6( 6) I-Q-Y-A-S-Q-[GS]-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L-V-Y-R-D-Q-[GN]-K Occurences: 6(6) KNLC_CAEEL : 214- 263: lhnlv IQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK ykeaa KNLC_DROME : 194- 243: lhnlv IQYASQGRYEVAVPLCKQALEDLERTSGHDHPDVATMLNILALVYRDQNK ykeaa KNLC_HUMAN : 217- 266: lhnlv IQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK ykdaa KNLC_LOLPE : 228- 277: lhnlv IQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQGK ykeaa KNLC_RAT : 217- 266: lhnlv IQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK ykdaa KNLC_STRPU : 223- 272: lhnlv IQYASQSRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK ykeag P 16: 205.6941 6( 6) V-I-Q-Y-A-S-Q-[GS]-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L-V-Y-R-D-Q-[GN] Occurences: 6(6) KNLC_CAEEL : 213- 262: tlhnl VIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN kykea KNLC_DROME : 193- 242: tlhnl VIQYASQGRYEVAVPLCKQALEDLERTSGHDHPDVATMLNILALVYRDQN kykea KNLC_HUMAN : 216- 265: tlhnl VIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN kykda KNLC_LOLPE : 227- 276: tlhnl VIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQG kykea KNLC_RAT : 216- 265: tlhnl VIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN kykda KNLC_STRPU : 222- 271: tlhnl VIQYASQSRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN kykea Q 17: 204.6946 6( 6) S-Q-[GS]-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L-V-Y-R-D-Q-[GN]-K-Y-K-[DE]-A Occurences: 6(6) KNLC_CAEEL : 218- 267: viqya SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEA anlln KNLC_DROME : 198- 247: viqya SQGRYEVAVPLCKQALEDLERTSGHDHPDVATMLNILALVYRDQNKYKEA anlln KNLC_HUMAN : 221- 270: viqya SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDA anlln KNLC_LOLPE : 232- 281: viqya SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQGKYKEA anlln KNLC_RAT : 221- 270: viqya SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDA anlln KNLC_STRPU : 227- 276: viqya SQSRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEA gnllh R 18: 204.6842 6( 6) Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L-V-Y-R-D-Q-[GN]-K-Y-K-[DE]-A-[AG]-N-L-L Occurences: 6(6) KNLC_CAEEL : 222- 271: asqgr YEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAANLL neals KNLC_DROME : 202- 251: asqgr YEVAVPLCKQALEDLERTSGHDHPDVATMLNILALVYRDQNKYKEAANLL ndals KNLC_HUMAN : 225- 274: asqgr YEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLL ndala KNLC_LOLPE : 236- 285: asqgr YEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQGKYKEAANLL ndalg KNLC_RAT : 225- 274: asqgr YEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLL ndala KNLC_STRPU : 231- 280: asqsr YEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAGNLL hdala S 19: 204.6842 6( 6) R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A-T-M-L-N-I-L-A-L-V-Y-R-D-Q-[GN]-K-Y-K-[DE]-A-[AG]-N-L Occurences: 6(6) KNLC_CAEEL : 221- 270: yasqg RYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAANL lneal KNLC_DROME : 201- 250: yasqg RYEVAVPLCKQALEDLERTSGHDHPDVATMLNILALVYRDQNKYKEAANL lndal KNLC_HUMAN : 224- 273: yasqg RYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANL lndal KNLC_LOLPE : 235- 284: yasqg RYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQGKYKEAANL lndal KNLC_RAT : 224- 273: yasqg RYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANL lndal KNLC_STRPU : 230- 279: yasqs RYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAGNL lhdal T 20: 202.4210 6( 6) G-x-E-I-P-A-R-L-R-T-L-H-N-L-V-I-Q-Y-A-S-Q-[GS]-R-Y-E-V-A-V-P-L-C-K-Q-A-L-E-D-L-E-[KR]-T-S-G-H-D-H-P-D-V-A Occurences: 6(6) KNLC_CAEEL : 199- 248: asanv GyEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVA tmlni KNLC_DROME : 179- 228: anqts GyEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLERTSGHDHPDVA tmlni KNLC_HUMAN : 202- 251: aaqqg GyEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVA tmlni KNLC_LOLPE : 213- 262: qaasg GcEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVA tmlni KNLC_RAT : 202- 251: aaqqg GyEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVA tmlni KNLC_STRPU : 208- 257: saaag GyEIPARLRTLHNLVIQYASQSRYEVAVPLCKQALEDLEKTSGHDHPDVA tmlni Number of patterns evaluated by Pratt:504263 Total running time: 110 seconds