------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 8 sequences from file IRF PATTERN CONSERVATION: CM: min Nr of Seqs to Match 8 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename IRF.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: ICSB_HUMAN 425 ICSB_MOUSE 424 IRF1_HUMAN 325 IRF1_MOUSE 329 IRF1_RAT 328 IRF2_HUMAN 349 IRF2_MOUSE 349 IRTF_HUMAN 393 Pratt run started at Thu Feb 6 20:07:39 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 40.7005 8( 8) P-x(2)-W-K-x(3)-R-C-A-x-N-x(0,1)-S-x(4)-E-x(0,1)-V 2: 32.8604 9( 8) R-x(1,2)-R-x-W-x(3)-Q-x(2)-S-x(3)-P-G-x(2)-W 3: 32.3604 8( 8) K-x(3)-R-C-A-x-N-x(0,1)-S-x(4)-E-x(0,1)-V 4: 32.3604 8( 8) W-x(4)-R-C-A-x-N-x(0,1)-S-x(4)-E-x(0,1)-V 5: 32.3604 8( 8) R-x-W-x(1,2)-E-x(0,1)-Q-x(2)-S-x(3)-P-G-x(2)-W 6: 31.8604 8( 8) G-x(1,2)-D-x(3,5)-D-A-x(2)-F-x(3)-A-x(3)-G-x(4)-G 7: 31.8604 8( 8) A-x(3,4)-D-x(3,5)-D-A-x(2)-F-x(3)-A-x(3)-G-x(4)-G 8: 31.8604 8( 8) W-x(3)-Q-x(2)-S-x(3)-P-G-x(2)-W-x(2,4)-K-x(3,4)-I 9: 31.3604 8( 8) H-x(2,4)-D-x(3,5)-D-A-x(2)-F-x(3)-A-x(3)-G-x(4)-G 10: 28.1904 8( 8) R-C-A-x-N-x(0,1)-S-x(4)-E-x(0,1)-V 11: 28.1904 8( 8) D-x(3,5)-D-A-x(2)-F-x(3)-A-x(3)-G-x(4)-G 12: 28.1904 8( 8) W-x(1,2)-E-x(0,1)-Q-x(2)-S-x(3)-P-G-x(2)-W 13: 27.6904 8( 8) Q-x(2)-S-x(3)-P-G-x(2)-W-x(2,4)-K-x(3,4)-I 14: 27.6904 10( 8) E-x(0,1)-Q-x(2)-S-x(3)-P-G-x(2)-W-x(2,4)-K 15: 27.1904 8( 8) D-A-x(2)-F-x(3)-A-x(3)-G-x(0,2)-K-x(1,3)-G 16: 27.1904 8( 8) D-x(3,5)-D-A-x(2)-F-x(3)-A-x(3)-G-x(0,2)-K 17: 24.0203 8( 8) C-A-x-N-x(0,1)-S-x(4)-E-x(0,1)-V 18: 24.0203 8( 8) P-x-T-x-K-x(3,4)-R-x(4,5)-S-x(4)-E 19: 23.5203 8( 8) S-x(3)-P-G-x(2)-W-x(2,4)-K-x(3,4)-I 20: 23.0203 8( 8) A-x(2)-F-x(3)-A-x(3)-G-x(0,2)-K-x(1,3)-G Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 121.6887 8( 8) R-[NPQ]-W-x(1,2)-E-x(0,1)-Q-[IV]-[DEN]-S-[GNS]-x(2)-P-G-[LV]-x-W-x-[DN]-x-[AE]-[EK]-x-[IM]-[FL]-[EQR]-I-P-W-x-H-A-[AG]-x(2)-[DG]-[FWY]-[DNR]-x-[DEN]-x-D-A-x-[FIL]-F-[KR]-[ANS] B 2: 119.0925 8( 8) W-x(1,2)-E-x(0,1)-Q-[IV]-[DEN]-S-[GNS]-x(2)-P-G-[LV]-x-W-x-[DN]-x-[AE]-[EK]-x-[IM]-[FL]-[EQR]-I-P-W-x-H-A-[AG]-x(2)-[DG]-[FWY]-[DNR]-x-[DEN]-x-D-A-x-[FIL]-F-[KR]-[ANS]-x-A C 3: 112.7077 9( 8) R-x(1,2)-R-x-W-[LV]-x(2)-Q-[IV]-[DEN]-S-[GNS]-x(2)-P-G-[LV]-x-W-x-[DN]-x-[AE]-[EK]-x-[IM]-[FL]-[EQR]-I-P-W-x-H-A-[AG]-x(2)-[DG]-[FWY]-[DNR]-x-[DEN]-x-D-A-x-[FIL] D 4: 105.3973 8( 8) P-x-[TV]-W-K-[AT]-[NR]-[FL]-R-C-A-[LM]-N-x(0,1)-S-x-[DEP]-x(2)-E-x(0,1)-V-x-[DE]-x-[GS]-x(2)-[DK]-[GIV]-[ANS]-[ENS]-[AP]-x-[KR]-V-Y-[QR]-[ILM]-[LV]-P E 5: 98.0554 8( 8) W-K-[AT]-[NR]-[FL]-R-C-A-[LM]-N-x(0,1)-S-x-[DEP]-x(2)-E-x(0,1)-V-x-[DE]-x-[GS]-x(2)-[DK]-[GIV]-[ANS]-[ENS]-[AP]-x-[KR]-V-Y-[QR]-[ILM]-[LV]-P F 6: 93.8853 8( 8) K-[AT]-[NR]-[FL]-R-C-A-[LM]-N-x(0,1)-S-x-[DEP]-x(2)-E-x(0,1)-V-x-[DE]-x-[GS]-x(2)-[DK]-[GIV]-[ANS]-[ENS]-[AP]-x-[KR]-V-Y-[QR]-[ILM]-[LV]-P G 7: 80.0791 8( 8) R-C-A-[LM]-N-x(0,1)-S-x-[DEP]-x(2)-E-x(0,1)-V-x-[DE]-x-[GS]-x(2)-[DK]-[GIV]-[ANS]-[ENS]-[AP]-x-[KR]-V-Y-[QR]-[ILM]-[LV]-P H 8: 75.9091 8( 8) C-A-[LM]-N-x(0,1)-S-x-[DEP]-x(2)-E-x(0,1)-V-x-[DE]-x-[GS]-x(2)-[DK]-[GIV]-[ANS]-[ENS]-[AP]-x-[KR]-V-Y-[QR]-[ILM]-[LV]-P I 9: 59.0939 8( 8) G-x(1,2)-D-x(3,5)-D-A-x-[FIL]-F-[KR]-[ANS]-x-A-[IV]-[FH]-x-G-[KR]-[FHY]-x(2)-G-x(4)-[DP]-[AP] J 10: 59.0939 8( 8) A-x(3,4)-D-x(3,5)-D-A-x-[FIL]-F-[KR]-[ANS]-x-A-[IV]-[FH]-x-G-[KR]-[FHY]-x(2)-G-x(4)-[DP]-[AP] K 11: 58.5939 8( 8) H-x(2,4)-D-x(3,5)-D-A-x-[FIL]-F-[KR]-[ANS]-x-A-[IV]-[FH]-x-G-[KR]-[FHY]-x(2)-G-x(4)-[DP]-[AP] L 12: 55.4238 8( 8) D-x(3,5)-D-A-x-[FIL]-F-[KR]-[ANS]-x-A-[IV]-[FH]-x-G-[KR]-[FHY]-x(2)-G-x(4)-[DP]-[AP] M 13: 51.3441 10( 8) E-x(0,1)-Q-[IV]-[DEN]-S-[GNS]-x(2)-P-G-[LV]-x-W-x(2,4)-K-x(2)-[FM]-x-[FIL]-[EPQ]-x(2)-[HW] N 14: 51.2822 8( 8) D-x(3,5)-D-A-x-[FIL]-F-[KR]-[ANS]-x-A-[IV]-[FH]-x-G-x(0,2)-K-x-[GQ]-[DEP]-x(4)-[AP] O 15: 49.2353 3( 3) P-x-[TV]-W-K-[AT]-[NR]-[FL]-R-C-A-[LM]-N-x(0,1)-S P 16: 48.5806 8( 8) D-A-x-[FIL]-F-[KR]-[ANS]-x-A-[IV]-[FH]-x-G-x(0,2)-K-x(1,3)-G-x(4)-[DP]-[AP] Q 17: 46.6959 8( 8) W-[LV]-x(2)-Q-[IV]-[DEN]-S-[GNS]-x(2)-P-G-[LV]-x-W-x(2,4)-K-x(3,4)-I R 18: 44.4106 8( 8) A-x-[FIL]-F-[KR]-[ANS]-x-A-[IV]-[FH]-x-G-x(0,2)-K-x(1,3)-G-x(4)-[DP]-[AP] S 19: 41.8934 3( 3) W-K-[AT]-[NR]-[FL]-R-C-A-[LM]-N-x(0,1)-S T 20: 39.3421 8( 8) Q-[IV]-[DEN]-S-[GNS]-x(2)-P-G-[LV]-x-W-x(2,4)-K-x(3,4)-I Best patterns with alignements: fitness hits(seqs) Pattern A 1: 121.6887 8( 8) R-[NPQ]-W-x(1,2)-E-x(0,1)-Q-[IV]-[DEN]-S-[GNS]-x(2)-P-G-[LV]-x-W-x-[DN]-x-[AE]-[EK]-x-[IM]-[FL]-[EQR]-I-P-W-x-H-A-[AG]-x(2)-[DG]-[FWY]-[DNR]-x-[DEN]-x-D-A-x-[FIL]-F-[KR]-[ANS] Occurences: 8(8) ICSB_HUMAN : 11- 59: gggrl RQWliE-QIDSSmyPGLiWeNeEKsMFRIPWkHAGkqDYNqEvDAsIFKA wavfk ICSB_MOUSE : 11- 59: ggrrl RQWliE-QIDSSmyPGLiWeNdEKtMFRIPWkHAGkqDYNqEvDAsIFKA wavfk IRF1_HUMAN : 9- 57: twmrm RPWl-EmQINSNqiPGLiWiNkEEmILEIPWkHAAkhGWDiNkDAcLFRS waiht IRF1_MOUSE : 9- 57: trmrm RPWl-EmQINSNqiPGLiWiNkEEmIFQIPWkHAAkhGWDiNkDAcLFRS waiht IRF1_RAT : 9- 57: trmrm RPWl-EmQINSNqiPGLsWiNkEEmIFQIPWkHAAlhGWDiNkDAcLFRS waiht IRF2_HUMAN : 9- 57: ermrm RPWleE-QINSNtiPGLkWlNkEKkIFQIPWmHAArhGWDvEkDApLFRN raiht IRF2_HUMAN : 9- 57: ermrm RPWl-EeQINSNtiPGLkWlNkEKkIFQIPWmHAArhGWDvEkDApLFRN raiht IRF2_MOUSE : 9- 57: ermrm RPWleE-QINSNtiPGLkWlNkEKkIFQIPWmHAArhGWDvEkDApLFRN waiht IRF2_MOUSE : 9- 57: ermrm RPWl-EeQINSNtiPGLkWlNkEKkIFQIPWmHAArhGWDvEkDApLFRN waiht IRTF_HUMAN : 13- 61: ctrkl RNWvvE-QVESGqfPGVcWdDtAKtMFRIPWkHAGkqDFReDqDAaFFKA waifk B 2: 119.0925 8( 8) W-x(1,2)-E-x(0,1)-Q-[IV]-[DEN]-S-[GNS]-x(2)-P-G-[LV]-x-W-x-[DN]-x-[AE]-[EK]-x-[IM]-[FL]-[EQR]-I-P-W-x-H-A-[AG]-x(2)-[DG]-[FWY]-[DNR]-x-[DEN]-x-D-A-x-[FIL]-F-[KR]-[ANS]-x-A Occurences: 8(8) ICSB_HUMAN : 13- 61: grlrq WliE-QIDSSmyPGLiWeNeEKsMFRIPWkHAGkqDYNqEvDAsIFKAwA vfkgk ICSB_MOUSE : 13- 61: rrlrq WliE-QIDSSmyPGLiWeNdEKtMFRIPWkHAGkqDYNqEvDAsIFKAwA vfkgk IRF1_HUMAN : 11- 59: mrmrp Wl-EmQINSNqiPGLiWiNkEEmILEIPWkHAAkhGWDiNkDAcLFRSwA ihtgr IRF1_MOUSE : 11- 59: mrmrp Wl-EmQINSNqiPGLiWiNkEEmIFQIPWkHAAkhGWDiNkDAcLFRSwA ihtgr IRF1_RAT : 11- 59: mrmrp Wl-EmQINSNqiPGLsWiNkEEmIFQIPWkHAAlhGWDiNkDAcLFRSwA ihtgr IRF2_HUMAN : 11- 59: mrmrp WleE-QINSNtiPGLkWlNkEKkIFQIPWmHAArhGWDvEkDApLFRNrA ihtgk IRF2_HUMAN : 11- 59: mrmrp Wl-EeQINSNtiPGLkWlNkEKkIFQIPWmHAArhGWDvEkDApLFRNrA ihtgk IRF2_MOUSE : 11- 59: mrmrp WleE-QINSNtiPGLkWlNkEKkIFQIPWmHAArhGWDvEkDApLFRNwA ihtgk IRF2_MOUSE : 11- 59: mrmrp Wl-EeQINSNtiPGLkWlNkEKkIFQIPWmHAArhGWDvEkDApLFRNwA ihtgk IRTF_HUMAN : 15- 63: rklrn WvvE-QVESGqfPGVcWdDtAKtMFRIPWkHAGkqDFReDqDAaFFKAwA ifkgk C 3: 112.7077 9( 8) R-x(1,2)-R-x-W-[LV]-x(2)-Q-[IV]-[DEN]-S-[GNS]-x(2)-P-G-[LV]-x-W-x-[DN]-x-[AE]-[EK]-x-[IM]-[FL]-[EQR]-I-P-W-x-H-A-[AG]-x(2)-[DG]-[FWY]-[DNR]-x-[DEN]-x-D-A-x-[FIL] Occurences: 9(8) ICSB_HUMAN : 9- 56: rnggg Rl-RqWLieQIDSSmyPGLiWeNeEKsMFRIPWkHAGkqDYNqEvDAsI fkawa ICSB_MOUSE : 8- 56: drngg RrlRqWLieQIDSSmyPGLiWeNdEKtMFRIPWkHAGkqDYNqEvDAsI fkawa ICSB_MOUSE : 9- 56: rnggr Rl-RqWLieQIDSSmyPGLiWeNdEKtMFRIPWkHAGkqDYNqEvDAsI fkawa IRF1_HUMAN : 7- 54: pitwm Rm-RpWLemQINSNqiPGLiWiNkEEmILEIPWkHAAkhGWDiNkDAcL frswa IRF1_MOUSE : 7- 54: pitrm Rm-RpWLemQINSNqiPGLiWiNkEEmIFQIPWkHAAkhGWDiNkDAcL frswa IRF1_RAT : 7- 54: pitrm Rm-RpWLemQINSNqiPGLsWiNkEEmIFQIPWkHAAlhGWDiNkDAcL frswa IRF2_HUMAN : 7- 54: pverm Rm-RpWLeeQINSNtiPGLkWlNkEKkIFQIPWmHAArhGWDvEkDApL frnra IRF2_MOUSE : 7- 54: pverm Rm-RpWLeeQINSNtiPGLkWlNkEKkIFQIPWmHAArhGWDvEkDApL frnwa IRTF_HUMAN : 10- 58: rarct RklRnWVveQVESGqfPGVcWdDtAKtMFRIPWkHAGkqDFReDqDAaF fkawa D 4: 105.3973 8( 8) P-x-[TV]-W-K-[AT]-[NR]-[FL]-R-C-A-[LM]-N-x(0,1)-S-x-[DEP]-x(2)-E-x(0,1)-V-x-[DE]-x-[GS]-x(2)-[DK]-[GIV]-[ANS]-[ENS]-[AP]-x-[KR]-V-Y-[QR]-[ILM]-[LV]-P Occurences: 8(8) ICSB_HUMAN : 75- 114: gdkae PaTWKTRLRCALNkSpDfeE-VtDrSqlDISEPyKVYRIVP eedqk ICSB_MOUSE : 75- 114: gdkae PaTWKTRLRCALNkSpDfeE-VtDrSqlDISEPyKVYRIVP eeeqk IRF1_HUMAN : 74- 113: ekepd PkTWKANFRCAMN-SlPdiEeVkDqSrnKGSSAvRVYRMLP pltkn IRF1_MOUSE : 74- 113: ekepd PkTWKANFRCAMN-SlPdiEeVkDqSrnKGSSAvRVYRMLP pltrn IRF1_RAT : 74- 113: ekepd PkTWKANFRCAMN-SlPdiEeVkDqSrnKGSSAvRVYRMLP pltkn IRF2_HUMAN : 74- 113: vdkpd PkTWKANFRCAMN-SlPdiEeVkDkSikKGNNAfRVYRMLP lserp IRF2_MOUSE : 74- 113: idkpd PkTWKANFRCAMN-SlPdiEeVkDrSikKGNNAfRVYRMLP lserp IRTF_HUMAN : 77- 116: gdtgg PaVWKTRLRCALNkSsEfkE-VpErGrmDVAEPyKVYQLLP pgivs E 5: 98.0554 8( 8) W-K-[AT]-[NR]-[FL]-R-C-A-[LM]-N-x(0,1)-S-x-[DEP]-x(2)-E-x(0,1)-V-x-[DE]-x-[GS]-x(2)-[DK]-[GIV]-[ANS]-[ENS]-[AP]-x-[KR]-V-Y-[QR]-[ILM]-[LV]-P Occurences: 8(8) ICSB_HUMAN : 78- 114: aepat WKTRLRCALNkSpDfeE-VtDrSqlDISEPyKVYRIVP eedqk ICSB_MOUSE : 78- 114: aepat WKTRLRCALNkSpDfeE-VtDrSqlDISEPyKVYRIVP eeeqk IRF1_HUMAN : 77- 113: pdpkt WKANFRCAMN-SlPdiEeVkDqSrnKGSSAvRVYRMLP pltkn IRF1_MOUSE : 77- 113: pdpkt WKANFRCAMN-SlPdiEeVkDqSrnKGSSAvRVYRMLP pltrn IRF1_RAT : 77- 113: pdpkt WKANFRCAMN-SlPdiEeVkDqSrnKGSSAvRVYRMLP pltkn IRF2_HUMAN : 77- 113: pdpkt WKANFRCAMN-SlPdiEeVkDkSikKGNNAfRVYRMLP lserp IRF2_MOUSE : 77- 113: pdpkt WKANFRCAMN-SlPdiEeVkDrSikKGNNAfRVYRMLP lserp IRTF_HUMAN : 80- 116: ggpav WKTRLRCALNkSsEfkE-VpErGrmDVAEPyKVYQLLP pgivs F 6: 93.8853 8( 8) K-[AT]-[NR]-[FL]-R-C-A-[LM]-N-x(0,1)-S-x-[DEP]-x(2)-E-x(0,1)-V-x-[DE]-x-[GS]-x(2)-[DK]-[GIV]-[ANS]-[ENS]-[AP]-x-[KR]-V-Y-[QR]-[ILM]-[LV]-P Occurences: 8(8) ICSB_HUMAN : 79- 114: epatw KTRLRCALNkSpDfeE-VtDrSqlDISEPyKVYRIVP eedqk ICSB_MOUSE : 79- 114: epatw KTRLRCALNkSpDfeE-VtDrSqlDISEPyKVYRIVP eeeqk IRF1_HUMAN : 78- 113: dpktw KANFRCAMN-SlPdiEeVkDqSrnKGSSAvRVYRMLP pltkn IRF1_MOUSE : 78- 113: dpktw KANFRCAMN-SlPdiEeVkDqSrnKGSSAvRVYRMLP pltrn IRF1_RAT : 78- 113: dpktw KANFRCAMN-SlPdiEeVkDqSrnKGSSAvRVYRMLP pltkn IRF2_HUMAN : 78- 113: dpktw KANFRCAMN-SlPdiEeVkDkSikKGNNAfRVYRMLP lserp IRF2_MOUSE : 78- 113: dpktw KANFRCAMN-SlPdiEeVkDrSikKGNNAfRVYRMLP lserp IRTF_HUMAN : 81- 116: gpavw KTRLRCALNkSsEfkE-VpErGrmDVAEPyKVYQLLP pgivs G 7: 80.0791 8( 8) R-C-A-[LM]-N-x(0,1)-S-x-[DEP]-x(2)-E-x(0,1)-V-x-[DE]-x-[GS]-x(2)-[DK]-[GIV]-[ANS]-[ENS]-[AP]-x-[KR]-V-Y-[QR]-[ILM]-[LV]-P Occurences: 8(8) ICSB_HUMAN : 83- 114: wktrl RCALNkSpDfeE-VtDrSqlDISEPyKVYRIVP eedqk ICSB_MOUSE : 83- 114: wktrl RCALNkSpDfeE-VtDrSqlDISEPyKVYRIVP eeeqk IRF1_HUMAN : 82- 113: wkanf RCAMN-SlPdiEeVkDqSrnKGSSAvRVYRMLP pltkn IRF1_MOUSE : 82- 113: wkanf RCAMN-SlPdiEeVkDqSrnKGSSAvRVYRMLP pltrn IRF1_RAT : 82- 113: wkanf RCAMN-SlPdiEeVkDqSrnKGSSAvRVYRMLP pltkn IRF2_HUMAN : 82- 113: wkanf RCAMN-SlPdiEeVkDkSikKGNNAfRVYRMLP lserp IRF2_MOUSE : 82- 113: wkanf RCAMN-SlPdiEeVkDrSikKGNNAfRVYRMLP lserp IRTF_HUMAN : 85- 116: wktrl RCALNkSsEfkE-VpErGrmDVAEPyKVYQLLP pgivs H 8: 75.9091 8( 8) C-A-[LM]-N-x(0,1)-S-x-[DEP]-x(2)-E-x(0,1)-V-x-[DE]-x-[GS]-x(2)-[DK]-[GIV]-[ANS]-[ENS]-[AP]-x-[KR]-V-Y-[QR]-[ILM]-[LV]-P Occurences: 8(8) ICSB_HUMAN : 84- 114: ktrlr CALNkSpDfeE-VtDrSqlDISEPyKVYRIVP eedqk ICSB_MOUSE : 84- 114: ktrlr CALNkSpDfeE-VtDrSqlDISEPyKVYRIVP eeeqk IRF1_HUMAN : 83- 113: kanfr CAMN-SlPdiEeVkDqSrnKGSSAvRVYRMLP pltkn IRF1_MOUSE : 83- 113: kanfr CAMN-SlPdiEeVkDqSrnKGSSAvRVYRMLP pltrn IRF1_RAT : 83- 113: kanfr CAMN-SlPdiEeVkDqSrnKGSSAvRVYRMLP pltkn IRF2_HUMAN : 83- 113: kanfr CAMN-SlPdiEeVkDkSikKGNNAfRVYRMLP lserp IRF2_MOUSE : 83- 113: kanfr CAMN-SlPdiEeVkDrSikKGNNAfRVYRMLP lserp IRTF_HUMAN : 86- 116: ktrlr CALNkSsEfkE-VpErGrmDVAEPyKVYQLLP pgivs I 9: 59.0939 8( 8) G-x(1,2)-D-x(3,5)-D-A-x-[FIL]-F-[KR]-[ANS]-x-A-[IV]-[FH]-x-G-[KR]-[FHY]-x(2)-G-x(4)-[DP]-[AP] Occurences: 8(8) ICSB_HUMAN : 44- 76: pwkha GkqDynqevDAsIFKAwAVFkGKFkeGdkaePA twktr ICSB_MOUSE : 44- 76: pwkha GkqDynqevDAsIFKAwAVFkGKFkeGdkaePA twktr IRF1_HUMAN : 45- 74: haakh Gw-Dink--DAcLFRSwAIHtGRYkaGekepDP ktwka IRF1_MOUSE : 45- 74: haakh Gw-Dink--DAcLFRSwAIHtGRYkaGekepDP ktwka IRF1_RAT : 45- 74: haalh Gw-Dink--DAcLFRSwAIHtGRYkaGekepDP ktwka IRF2_HUMAN : 45- 74: haarh Gw-Dvek--DApLFRNrAIHtGKHqpGvdkpDP ktwka IRF2_MOUSE : 45- 74: haarh Gw-Dvek--DApLFRNwAIHtGKHqpGidkpDP ktwka IRTF_HUMAN : 46- 78: pwkha GkqDfredqDAaFFKAwAIFkGKYkeGdtggPA vwktr J 10: 59.0939 8( 8) A-x(3,4)-D-x(3,5)-D-A-x-[FIL]-F-[KR]-[ANS]-x-A-[IV]-[FH]-x-G-[KR]-[FHY]-x(2)-G-x(4)-[DP]-[AP] Occurences: 8(8) ICSB_HUMAN : 43- 76: ipwkh Agkq-DynqevDAsIFKAwAVFkGKFkeGdkaePA twktr ICSB_MOUSE : 43- 76: ipwkh Agkq-DynqevDAsIFKAwAVFkGKFkeGdkaePA twktr IRF1_HUMAN : 42- 74: pwkha AkhgwDink--DAcLFRSwAIHtGRYkaGekepDP ktwka IRF1_MOUSE : 42- 74: pwkha AkhgwDink--DAcLFRSwAIHtGRYkaGekepDP ktwka IRF1_RAT : 42- 74: pwkha AlhgwDink--DAcLFRSwAIHtGRYkaGekepDP ktwka IRF2_HUMAN : 42- 74: pwmha ArhgwDvek--DApLFRNrAIHtGKHqpGvdkpDP ktwka IRF2_MOUSE : 42- 74: pwmha ArhgwDvek--DApLFRNwAIHtGKHqpGidkpDP ktwka IRTF_HUMAN : 45- 78: ipwkh Agkq-DfredqDAaFFKAwAIFkGKYkeGdtggPA vwktr K 11: 58.5939 8( 8) H-x(2,4)-D-x(3,5)-D-A-x-[FIL]-F-[KR]-[ANS]-x-A-[IV]-[FH]-x-G-[KR]-[FHY]-x(2)-G-x(4)-[DP]-[AP] Occurences: 8(8) ICSB_HUMAN : 42- 76: ripwk HagkqDynqevDAsIFKAwAVFkGKFkeGdkaePA twktr ICSB_MOUSE : 42- 76: ripwk HagkqDynqevDAsIFKAwAVFkGKFkeGdkaePA twktr IRF1_HUMAN : 44- 74: khaak Hgw--Dink--DAcLFRSwAIHtGRYkaGekepDP ktwka IRF1_MOUSE : 44- 74: khaak Hgw--Dink--DAcLFRSwAIHtGRYkaGekepDP ktwka IRF1_RAT : 44- 74: khaal Hgw--Dink--DAcLFRSwAIHtGRYkaGekepDP ktwka IRF2_HUMAN : 44- 74: mhaar Hgw--Dvek--DApLFRNrAIHtGKHqpGvdkpDP ktwka IRF2_MOUSE : 44- 74: mhaar Hgw--Dvek--DApLFRNwAIHtGKHqpGidkpDP ktwka IRTF_HUMAN : 44- 78: ripwk HagkqDfredqDAaFFKAwAIFkGKYkeGdtggPA vwktr L 12: 55.4238 8( 8) D-x(3,5)-D-A-x-[FIL]-F-[KR]-[ANS]-x-A-[IV]-[FH]-x-G-[KR]-[FHY]-x(2)-G-x(4)-[DP]-[AP] Occurences: 8(8) ICSB_HUMAN : 47- 76: hagkq DynqevDAsIFKAwAVFkGKFkeGdkaePA twktr ICSB_MOUSE : 47- 76: hagkq DynqevDAsIFKAwAVFkGKFkeGdkaePA twktr IRF1_HUMAN : 47- 74: akhgw Dink--DAcLFRSwAIHtGRYkaGekepDP ktwka IRF1_MOUSE : 47- 74: akhgw Dink--DAcLFRSwAIHtGRYkaGekepDP ktwka IRF1_RAT : 47- 74: alhgw Dink--DAcLFRSwAIHtGRYkaGekepDP ktwka IRF2_HUMAN : 47- 74: arhgw Dvek--DApLFRNrAIHtGKHqpGvdkpDP ktwka IRF2_MOUSE : 47- 74: arhgw Dvek--DApLFRNwAIHtGKHqpGidkpDP ktwka IRTF_HUMAN : 49- 78: hagkq DfredqDAaFFKAwAIFkGKYkeGdtggPA vwktr M 13: 51.3441 10( 8) E-x(0,1)-Q-[IV]-[DEN]-S-[GNS]-x(2)-P-G-[LV]-x-W-x(2,4)-K-x(2)-[FM]-x-[FIL]-[EPQ]-x(2)-[HW] Occurences: 10(8) ICSB_HUMAN : 16- 42: rqwli E-QIDSSmyPGLiWeneeKsmFrIPwkH agkqd ICSB_MOUSE : 16- 42: rqwli E-QIDSSmyPGLiWendeKtmFrIPwkH agkqd IRF1_HUMAN : 13- 38: mrpwl EmQINSNqiPGLiWin--KeeMiLEipW khaak IRF1_MOUSE : 13- 38: mrpwl EmQINSNqiPGLiWin--KeeMiFQipW khaak IRF1_RAT : 13- 38: mrpwl EmQINSNqiPGLsWin--KeeMiFQipW khaal IRF2_HUMAN : 13- 40: mrpwl EeQINSNtiPGLkWlnkeKkiFqIPwmH aarhg IRF2_HUMAN : 14- 40: rpwle E-QINSNtiPGLkWlnkeKkiFqIPwmH aarhg IRF2_MOUSE : 13- 40: mrpwl EeQINSNtiPGLkWlnkeKkiFqIPwmH aarhg IRF2_MOUSE : 14- 40: rpwle E-QINSNtiPGLkWlnkeKkiFqIPwmH aarhg IRTF_HUMAN : 18- 44: rnwvv E-QVESGqfPGVcWddtaKtmFrIPwkH agkqd N 14: 51.2822 8( 8) D-x(3,5)-D-A-x-[FIL]-F-[KR]-[ANS]-x-A-[IV]-[FH]-x-G-x(0,2)-K-x-[GQ]-[DEP]-x(4)-[AP] Occurences: 8(8) ICSB_HUMAN : 47- 76: hagkq DynqevDAsIFKAwAVFkGkfKeGDkaepA twktr ICSB_MOUSE : 47- 76: hagkq DynqevDAsIFKAwAVFkGkfKeGDkaepA twktr IRF1_HUMAN : 47- 74: akhgw Dink--DAcLFRSwAIHtGryKaGEkepdP ktwka IRF1_MOUSE : 47- 74: akhgw Dink--DAcLFRSwAIHtGryKaGEkepdP ktwka IRF1_RAT : 47- 74: alhgw Dink--DAcLFRSwAIHtGryKaGEkepdP ktwka IRF2_HUMAN : 47- 72: arhgw Dvek--DApLFRNrAIHtG--KhQPgvdkP dpktw IRF2_MOUSE : 47- 72: arhgw Dvek--DApLFRNwAIHtG--KhQPgidkP dpktw IRTF_HUMAN : 49- 78: hagkq DfredqDAaFFKAwAIFkGkyKeGDtggpA vwktr O 15: 49.2353 3( 3) P-x-[TV]-W-K-[AT]-[NR]-[FL]-R-C-A-[LM]-N-x(0,1)-S Occurences: 3(3) ICSB_HUMAN : 75- 89: gdkae PaTWKTRLRCALNkS pdfee ICSB_MOUSE : 75- 89: gdkae PaTWKTRLRCALNkS pdfee IRTF_HUMAN : 77- 91: gdtgg PaVWKTRLRCALNkS sefke P 16: 48.5806 8( 8) D-A-x-[FIL]-F-[KR]-[ANS]-x-A-[IV]-[FH]-x-G-x(0,2)-K-x(1,3)-G-x(4)-[DP]-[AP] Occurences: 8(8) ICSB_HUMAN : 53- 76: ynqev DAsIFKAwAVFkGkfKe--GdkaePA twktr ICSB_HUMAN : 53- 76: ynqev DAsIFKAwAVFkG--KfkeGdkaePA twktr ICSB_MOUSE : 53- 76: ynqev DAsIFKAwAVFkGkfKe--GdkaePA twktr ICSB_MOUSE : 53- 76: ynqev DAsIFKAwAVFkG--KfkeGdkaePA twktr IRF1_HUMAN : 51- 74: wdink DAcLFRSwAIHtGryKa--GekepDP ktwka IRF1_MOUSE : 51- 74: wdink DAcLFRSwAIHtGryKa--GekepDP ktwka IRF1_RAT : 51- 74: wdink DAcLFRSwAIHtGryKa--GekepDP ktwka IRF2_HUMAN : 51- 74: wdvek DApLFRNrAIHtG--KhqpGvdkpDP ktwka IRF2_MOUSE : 51- 74: wdvek DApLFRNwAIHtG--KhqpGidkpDP ktwka IRTF_HUMAN : 55- 78: fredq DAaFFKAwAIFkGkyKe--GdtggPA vwktr IRTF_HUMAN : 55- 78: fredq DAaFFKAwAIFkG--KykeGdtggPA vwktr Q 17: 46.6959 8( 8) W-[LV]-x(2)-Q-[IV]-[DEN]-S-[GNS]-x(2)-P-G-[LV]-x-W-x(2,4)-K-x(3,4)-I Occurences: 8(8) ICSB_HUMAN : 13- 38: grlrq WLieQIDSSmyPGLiWeneeKsmfrI pwkha ICSB_MOUSE : 13- 38: rrlrq WLieQIDSSmyPGLiWendeKtmfrI pwkha IRF1_HUMAN : 11- 33: mrmrp WLemQINSNqiPGLiWin--Keem-I leipw IRF1_MOUSE : 11- 33: mrmrp WLemQINSNqiPGLiWin--Keem-I fqipw IRF1_RAT : 11- 33: mrmrp WLemQINSNqiPGLsWin--Keem-I fqipw IRF2_HUMAN : 11- 33: mrmrp WLeeQINSNtiPGLkWln--Kekk-I fqipw IRF2_HUMAN : 11- 36: mrmrp WLeeQINSNtiPGLkWlnkeKkifqI pwmha IRF2_MOUSE : 11- 33: mrmrp WLeeQINSNtiPGLkWln--Kekk-I fqipw IRF2_MOUSE : 11- 36: mrmrp WLeeQINSNtiPGLkWlnkeKkifqI pwmha IRTF_HUMAN : 15- 40: rklrn WVveQVESGqfPGVcWddtaKtmfrI pwkha R 18: 44.4106 8( 8) A-x-[FIL]-F-[KR]-[ANS]-x-A-[IV]-[FH]-x-G-x(0,2)-K-x(1,3)-G-x(4)-[DP]-[AP] Occurences: 8(8) ICSB_HUMAN : 54- 76: nqevd AsIFKAwAVFkGkfKe--GdkaePA twktr ICSB_HUMAN : 54- 76: nqevd AsIFKAwAVFkG--KfkeGdkaePA twktr ICSB_MOUSE : 54- 76: nqevd AsIFKAwAVFkGkfKe--GdkaePA twktr ICSB_MOUSE : 54- 76: nqevd AsIFKAwAVFkG--KfkeGdkaePA twktr IRF1_HUMAN : 52- 74: dinkd AcLFRSwAIHtGryKa--GekepDP ktwka IRF1_MOUSE : 52- 74: dinkd AcLFRSwAIHtGryKa--GekepDP ktwka IRF1_RAT : 52- 74: dinkd AcLFRSwAIHtGryKa--GekepDP ktwka IRF2_HUMAN : 52- 74: dvekd ApLFRNrAIHtG--KhqpGvdkpDP ktwka IRF2_MOUSE : 52- 74: dvekd ApLFRNwAIHtG--KhqpGidkpDP ktwka IRTF_HUMAN : 56- 78: redqd AaFFKAwAIFkGkyKe--GdtggPA vwktr IRTF_HUMAN : 56- 78: redqd AaFFKAwAIFkG--KykeGdtggPA vwktr S 19: 41.8934 3( 3) W-K-[AT]-[NR]-[FL]-R-C-A-[LM]-N-x(0,1)-S Occurences: 3(3) ICSB_HUMAN : 78- 89: aepat WKTRLRCALNkS pdfee ICSB_MOUSE : 78- 89: aepat WKTRLRCALNkS pdfee IRTF_HUMAN : 80- 91: ggpav WKTRLRCALNkS sefke T 20: 39.3421 8( 8) Q-[IV]-[DEN]-S-[GNS]-x(2)-P-G-[LV]-x-W-x(2,4)-K-x(3,4)-I Occurences: 8(8) ICSB_HUMAN : 17- 38: qwlie QIDSSmyPGLiWeneeKsmfrI pwkha ICSB_MOUSE : 17- 38: qwlie QIDSSmyPGLiWendeKtmfrI pwkha IRF1_HUMAN : 15- 33: pwlem QINSNqiPGLiWin--Keem-I leipw IRF1_MOUSE : 15- 33: pwlem QINSNqiPGLiWin--Keem-I fqipw IRF1_RAT : 15- 33: pwlem QINSNqiPGLsWin--Keem-I fqipw IRF2_HUMAN : 15- 33: pwlee QINSNtiPGLkWln--Kekk-I fqipw IRF2_HUMAN : 15- 36: pwlee QINSNtiPGLkWlnkeKkifqI pwmha IRF2_MOUSE : 15- 33: pwlee QINSNtiPGLkWln--Kekk-I fqipw IRF2_MOUSE : 15- 36: pwlee QINSNtiPGLkWlnkeKkifqI pwmha IRTF_HUMAN : 19- 40: nwvve QVESGqfPGVcWddtaKtmfrI pwkha Number of patterns evaluated by Pratt:8560 Total running time: 5 seconds