------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 15 sequences from file INTERLEUKIN_6 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 15 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename INTERLEUKIN_6.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CSF3_BOVIN 174 CSF3_CANFA 175 CSF3_HUMAN 207 CSF3_MOUSE 208 IL6_BOVIN 208 IL6_CANFA 207 IL6_CERTO 212 IL6_FELCA 208 IL6_HUMAN 212 IL6_MOUSE 211 IL6_MUSVI 125 IL6_PIG 212 IL6_RAT 211 IL6_SHEEP 208 MGF_CHICK 201 Pratt run started at Thu Feb 6 20:07:15 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 12.5102 19( 15) F-L-x(3)-L 2: 12.0102 27( 15) L-x(3)-L-x(3,4)-R 3: 12.0102 21( 15) L-x(2)-L-x(2,3)-L 4: 12.0102 16( 15) L-x(3)-E-x(2,3)-L 5: 12.0102 16( 15) L-x(3,4)-E-x(2)-L 6: 12.0102 18( 15) Q-x(2)-L-x(2,3)-L 7: 12.0102 18( 15) E-x(2)-L-x(0,1)-L 8: 12.0102 19( 15) E-x(1,2)-L-x-L 9: 11.5102 22( 15) F-x(0,1)-L-x(3,4)-R 10: 11.5102 28( 15) L-x(0,1)-E-x(1,2)-L 11: 11.5102 22( 15) L-x(2,3)-F-x(3,4)-L 12: 11.5102 30( 15) L-x(3)-L-x(0,2)-Q 13: 11.5102 41( 15) L-x(3,4)-L-x(2,3)-L 14: 11.5102 23( 15) L-x(4,5)-Q-x(1,2)-L 15: 11.5102 22( 15) S-x(4)-L-x(2,4)-L 16: 11.5102 19( 15) I-x(4,5)-E-x(1,2)-L 17: 11.5102 35( 15) L-x-L-x(1,3)-L 18: 11.5102 43( 15) L-x(1,2)-L-x(2,3)-L 19: 11.5102 44( 15) L-x(0,1)-L-x(1,2)-L 20: 11.5102 34( 15) L-x(4)-L-x(1,3)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 16.5404 16( 15) E-x(1,2)-L-x-L-[LPV]-x(2)-[ADEQS] B 2: 15.9366 22( 15) L-x(4)-L-x(1,3)-L-[EPQS]-x(3)-[DEKR] C 3: 15.9131 21( 15) L-x(1,2)-L-x(2,3)-L-x(2)-[APST]-x(2)-[AGPS] D 4: 14.6868 15( 15) L-x(2,3)-F-x(3,4)-L-[ER] E 5: 14.1076 17( 15) L-x-L-x(1,3)-L-[ALV] F 6: 13.7224 30( 15) L-x(3,4)-L-x(2,3)-L-[EQRS] G 7: 12.9499 25( 15) L-x-[ADEGNQT]-x-L-x(0,2)-Q H 8: 12.5102 19( 15) F-L-x(3)-L I 9: 12.0102 27( 15) L-x(3)-L-x(3,4)-R J 10: 12.0102 21( 15) L-x(2)-L-x(2,3)-L K 11: 12.0102 16( 15) L-x(3)-E-x(2,3)-L L 12: 12.0102 16( 15) L-x(3,4)-E-x(2)-L M 13: 12.0102 18( 15) Q-x(2)-L-x(2,3)-L N 14: 12.0102 18( 15) E-x(2)-L-x(0,1)-L O 15: 11.5102 22( 15) F-x(0,1)-L-x(3,4)-R P 16: 11.5102 28( 15) L-x(0,1)-E-x(1,2)-L Q 17: 11.5102 23( 15) L-x(4,5)-Q-x(1,2)-L R 18: 11.5102 22( 15) S-x(4)-L-x(2,4)-L S 19: 11.5102 19( 15) I-x(4,5)-E-x(1,2)-L T 20: 11.5102 44( 15) L-x(0,1)-L-x(1,2)-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 16.5404 16( 15) E-x(1,2)-L-x-L-[LPV]-x(2)-[ADEQS] Occurences: 16(15) CSF3_BOVIN : 45- 53: klchp Ee-LmLLrhS lgipq CSF3_CANFA : 46- 54: qlchp Ee-LvLLghA lgipq CSF3_HUMAN : 78- 86: klchp Ee-LvLLghS lgipw CSF3_MOUSE : 81- 89: klchp Ee-LvLLghS lgipk IL6_BOVIN : 87- 96: ketla EnkLnLPkmE ekdgc IL6_CANFA : 82- 91: keala EnnLhLPklE gkdgc IL6_CERTO : 87- 96: keala EnnLnLPkmA ekdgc IL6_FELCA : 83- 92: keala EnnLnLPklA ekdgc IL6_HUMAN : 87- 96: keala EnnLnLPkmA ekdgc IL6_MOUSE : 85- 94: ddala EnnLkLPeiQ rndgc IL6_MUSVI : 2- 11: a EnnLkLPklA ekdkc IL6_PIG : 87- 96: kevla EnnLnLPkmA ekdgc IL6_RAT : 85- 94: ddals EnnLkLPeiQ rndgc IL6_SHEEP : 87- 96: ketla EnkLkLPkmE ekdgc MGF_CHICK : 69- 78: fqlct EeeLqLVqpD phlvq MGF_CHICK : 70- 78: qlcte Ee-LqLVqpD phlvq B 2: 15.9366 22( 15) L-x(4)-L-x(1,3)-L-[EPQS]-x(3)-[DEKR] Occurences: 22(15) CSF3_BOVIN : 9- 23: gpars LpqsfLlkcLEqvrK iqadg CSF3_BOVIN : 152- 166: raggv LvasqLhrfLElayR glryl CSF3_CANFA : 10- 24: gptgp LpqsfLlkcLEqmrK vqadg CSF3_CANFA : 153- 167: raggv LvasnLqsfLElayR alrhf CSF3_HUMAN : 39- 53: gpass LpqsfLlkcLEqvrK iqgdg CSF3_HUMAN : 185- 199: raggv LvashLqsfLEvsyR vlrhl CSF3_MOUSE : 45- 59: ppslp LprsfLlksLEqvrK iqasg IL6_BOVIN : 85- 97: ssket LaenkLn--LPkmeE kdgcf IL6_BOVIN : 189- 203: nakii LilrnLenfLQfslR airmk IL6_CANFA : 188- 202: httih LilrsLedfLQfslR avrim IL6_CERTO : 85- 97: stkea LaennLn--LPkmaE kdgcf IL6_FELCA : 81- 93: dskea LaennLn--LPklaE kdgcf IL6_FELCA : 189- 203: httih LtlrrLedfLQfslR avrim IL6_HUMAN : 85- 97: sskea LaennLn--LPkmaE kdgcf IL6_MOUSE : 83- 95: nndda LaennLk--LPeiqR ndgcy IL6_MUSVI : 106- 120: hvtih LilrsLedfLQfslR airim IL6_PIG : 85- 97: nskev LaennLn--LPkmaE kdgcf IL6_PIG : 193- 207: ntkii LilrsLedfLQfslR airim IL6_RAT : 54- 68: sqvgg LityvLreiLEmrkE lcngn IL6_RAT : 83- 95: nsdda LsennLk--LPeiqR ndgcf IL6_SHEEP : 85- 97: nsket LaenkLk--LPkmeE kdgcf MGF_CHICK : 21- 34: apwqa LhgapLae-LSgdhD fqlfl C 3: 15.9131 21( 15) L-x(1,2)-L-x(2,3)-L-x(2)-[APST]-x(2)-[AGPS] Occurences: 21(15) CSF3_BOVIN : 47- 60: chpee LmlLrhsLgiPqaP lsscs CSF3_BOVIN : 82- 94: qlhgg Lf-LyqgLlqAlaG ispel CSF3_CANFA : 48- 61: chpee LvlLghaLgiPqpP lsscs CSF3_CANFA : 83- 95: qlhsg Lf-LyqgLlqAlaG ispel CSF3_HUMAN : 80- 93: chpee LvlLghsLgiPwaP lsscp CSF3_HUMAN : 115- 127: qlhsg Lf-LyqgLlqAleG ispel CSF3_MOUSE : 83- 96: chpee LvlLghsLgiPkaS lsgcs CSF3_MOUSE : 118- 130: qlhsg Lc-LyqgLlqAlsG ispal CSF3_MOUSE : 139- 150: alapt Ld-Llq-LdvAnfA ttiwq IL6_BOVIN : 191- 204: kiili LrnLenfLqfSlrA irmk IL6_CANFA : 190- 203: tihli LrsLedfLqfSlrA vrim IL6_CERTO : 16- 28: pvafs LglLlv-LpaAfpA pvlpg IL6_CERTO : 16- 28: pvafs Lg-LllvLpaAfpA pvlpg IL6_FELCA : 191- 204: tihlt LrrLedfLqfSlrA vrim IL6_HUMAN : 16- 28: pvafs LglLlv-LpaAfpA pvppg IL6_HUMAN : 16- 28: pvafs Lg-LllvLpaAfpA pvppg IL6_MOUSE : 194- 207: tiqfi LksLeefLkvTlrS trqt IL6_MUSVI : 108- 121: tihli LrsLedfLqfSlrA irim IL6_PIG : 195- 208: kiili LrsLedfLqfSlrA irim IL6_RAT : 15- 26: qpvaf Lg-Lml-LtaTafP tsqvr IL6_RAT : 194- 207: tiqli LkaLeefLkvTmrS trqt IL6_SHEEP : 191- 204: kviii LrsLenfLqfSlrA irmk MGF_CHICK : 8- 20: cltpv La-LalvLgaPwqA lhgap D 4: 14.6868 15( 15) L-x(2,3)-F-x(3,4)-L-[ER] Occurences: 15(15) CSF3_BOVIN : 9- 19: gpars LpqsFllkcLE qvrki CSF3_CANFA : 10- 20: gptgp LpqsFllkcLE qmrkv CSF3_HUMAN : 39- 49: gpass LpqsFllkcLE qvrki CSF3_MOUSE : 45- 55: ppslp LprsFllksLE qvrki IL6_BOVIN : 194- 203: lilrn Len-FlqfsLR airmk IL6_CANFA : 193- 202: lilrs Led-FlqfsLR avrim IL6_CERTO : 119- 127: kiitg Lle-Fevy-LE ylqnr IL6_FELCA : 194- 203: ltlrr Led-FlqfsLR avrim IL6_HUMAN : 119- 127: kiitg Lle-Fevy-LE ylqnr IL6_MOUSE : 197- 206: filks Lee-FlkvtLR strqt IL6_MUSVI : 111- 120: lilrs Led-FlqfsLR airim IL6_PIG : 198- 207: lilrs Led-FlqfsLR airim IL6_RAT : 117- 125: kicsg Lle-Frfy-LE fvknn IL6_SHEEP : 194- 203: iilrs Len-FlqfsLR airmk MGF_CHICK : 181- 189: ggffi Lan-Fqrf-LE tayra E 5: 14.1076 17( 15) L-x-L-x(1,3)-L-[ALV] Occurences: 17(15) CSF3_BOVIN : 82- 89: qlhgg LfLyqgLL qalag CSF3_CANFA : 83- 90: qlhsg LfLyqgLL qalag CSF3_HUMAN : 115- 122: qlhsg LfLyqgLL qaleg CSF3_MOUSE : 118- 125: qlhsg LcLyqgLL qalsg CSF3_MOUSE : 202- 208: letar LaLhh-LA IL6_BOVIN : 16- 21: pfavs LgLl--LV mtsaf IL6_CANFA : 11- 16: tsafs LgLl--LV mataf IL6_CERTO : 16- 21: pvafs LgLl--LV lpaaf IL6_FELCA : 16- 21: plafs LgLl--LV vataf IL6_FELCA : 86- 92: laenn LnLpk-LA ekdgc IL6_HUMAN : 16- 21: pvafs LgLl--LV lpaaf IL6_MOUSE : 15- 20: hpvaf LgLm--LV tttaf IL6_MUSVI : 5- 11: aenn LkLpk-LA ekdkc IL6_PIG : 16- 21: pvafs LgLl--LV mataf IL6_RAT : 15- 20: qpvaf LgLm--LL tataf IL6_SHEEP : 16- 21: plavs LgLl--LV mtsaf MGF_CHICK : 8- 13: cltpv LaLa--LV lgapw F 6: 13.7224 30( 15) L-x(3,4)-L-x(2,3)-L-[EQRS] Occurences: 30(15) CSF3_BOVIN : 9- 19: gpars LpqsfLlkcLE qvrki CSF3_BOVIN : 99- 107: gispe Lapt-Ldt-LQ ldvtd CSF3_BOVIN : 152- 162: raggv LvasqLhrfLE layrg CSF3_CANFA : 10- 20: gptgp LpqsfLlkcLE qmrkv CSF3_CANFA : 100- 108: gispe Lapt-Ldt-LQ ldttd CSF3_CANFA : 153- 163: raggv LvasnLqsfLE layra CSF3_HUMAN : 39- 49: gpass LpqsfLlkcLE qvrki CSF3_HUMAN : 117- 126: hsglf LyqglLqa-LE gispe CSF3_HUMAN : 117- 126: hsglf Lyqg-LlqaLE gispe CSF3_HUMAN : 132- 140: gispe Lgpt-Ldt-LQ ldvad CSF3_HUMAN : 185- 195: raggv LvashLqsfLE vsyrv CSF3_MOUSE : 45- 55: ppslp LprsfLlksLE qvrki CSF3_MOUSE : 120- 129: hsglc LyqglLqa-LS gispa CSF3_MOUSE : 120- 129: hsglc Lyqg-LlqaLS gispa CSF3_MOUSE : 135- 143: gispa Lapt-Ldl-LQ ldvan CSF3_MOUSE : 188- 198: raggv LaisyLqgfLE tarla IL6_BOVIN : 189- 199: nakii LilrnLenfLQ fslra IL6_BOVIN : 194- 203: lilrn Lenf-LqfsLR airmk IL6_CANFA : 188- 198: httih LilrsLedfLQ fslra IL6_CANFA : 193- 202: lilrs Ledf-LqfsLR avrim IL6_CERTO : 202- 210: sfkef Lqss-Lra-LR qm IL6_FELCA : 189- 199: httih LtlrrLedfLQ fslra IL6_FELCA : 194- 203: ltlrr Ledf-LqfsLR avrim IL6_HUMAN : 202- 210: sfkef Lqss-Lra-LR qm IL6_MOUSE : 197- 206: filks Leef-LkvtLR strqt IL6_MUSVI : 106- 116: hvtih LilrsLedfLQ fslra IL6_MUSVI : 111- 120: lilrs Ledf-LqfsLR airim IL6_PIG : 193- 203: ntkii LilrsLedfLQ fslra IL6_PIG : 198- 207: lilrs Ledf-LqfsLR airim IL6_RAT : 54- 64: sqvgg LityvLreiLE mrkel IL6_SHEEP : 194- 203: iilrs Lenf-LqfsLR airmk MGF_CHICK : 21- 30: apwqa LhgapLae-LS gdhdf G 7: 12.9499 25( 15) L-x-[ADEGNQT]-x-L-x(0,2)-Q Occurences: 25(15) CSF3_BOVIN : 71- 77: sqslq LrGcLn-Q lhggl CSF3_BOVIN : 84- 90: hgglf LyQgLl-Q alagi CSF3_CANFA : 72- 78: sqalq LmGcLr-Q lhsgl CSF3_CANFA : 85- 91: hsglf LyQgLl-Q alagi CSF3_HUMAN : 104- 110: sqalq LaGcLs-Q lhsgl CSF3_HUMAN : 117- 123: hsglf LyQgLl-Q alegi CSF3_MOUSE : 120- 126: hsglc LyQgLl-Q alsgi IL6_BOVIN : 150- 156: knirt LiQiLk-Q kiadl IL6_BOVIN : 194- 199: lilrn LeNfL--Q fslra IL6_CANFA : 170- 175: ttdas LqAiL--Q sqdec IL6_CANFA : 170- 177: ttdas LqAiLqsQ decvk IL6_CANFA : 193- 198: lilrs LeDfL--Q fslra IL6_CERTO : 150- 155: mstkv LiQlL--Q kkakn IL6_CERTO : 175- 180: ttnas LlTkL--Q aqnqw IL6_CERTO : 175- 182: ttnas LlTkLqaQ nqwlq IL6_FELCA : 171- 176: tvevg LqAkL--Q sqeew IL6_FELCA : 171- 178: tvevg LqAkLqsQ eewlr IL6_FELCA : 194- 199: ltlrr LeDfL--Q fslra IL6_HUMAN : 150- 155: mstkv LiQfL--Q kkakn IL6_HUMAN : 175- 180: ttnas LlTkL--Q aqnqw IL6_HUMAN : 175- 182: ttnas LlTkLqaQ nqwlq IL6_MOUSE : 174- 181: isnal LtDkLesQ kewlr IL6_MUSVI : 111- 116: lilrs LeDfL--Q fslra IL6_PIG : 150- 156: istka LiQtLr-Q kgknp IL6_PIG : 175- 180: ttnag LlDkL--Q sqnew IL6_PIG : 175- 182: ttnag LlDkLqsQ newmk IL6_PIG : 198- 203: lilrs LeDfL--Q fslra IL6_RAT : 174- 181: tsnal LmEkLesQ kewlr IL6_SHEEP : 194- 199: iilrs LeNfL--Q fslra MGF_CHICK : 127- 132: pnhtt LvEtL--Q ldaan H 8: 12.5102 19( 15) F-L-x(3)-L Occurences: 19(15) CSF3_BOVIN : 13- 18: slpqs FLlkcL eqvrk CSF3_BOVIN : 83- 88: lhggl FLyqgL lqala CSF3_CANFA : 14- 19: plpqs FLlkcL eqmrk CSF3_CANFA : 84- 89: lhsgl FLyqgL lqala CSF3_HUMAN : 43- 48: slpqs FLlkcL eqvrk CSF3_HUMAN : 116- 121: lhsgl FLyqgL lqale CSF3_MOUSE : 49- 54: plprs FLlksL eqvrk IL6_BOVIN : 197- 202: rnlen FLqfsL rairm IL6_CANFA : 196- 201: rsled FLqfsL ravri IL6_CERTO : 201- 206: rsfke FLqssL ralrq IL6_FELCA : 197- 202: rrled FLqfsL ravri IL6_HUMAN : 201- 206: rsfke FLqssL ralrq IL6_MOUSE : 14- 19: fhpva FLglmL vttta IL6_MOUSE : 200- 205: kslee FLkvtL rstrq IL6_MUSVI : 114- 119: rsled FLqfsL rairi IL6_PIG : 201- 206: rsled FLqfsL rairi IL6_RAT : 14- 19: fqpva FLglmL ltata IL6_SHEEP : 197- 202: rslen FLqfsL rairm MGF_CHICK : 38- 43: hdfql FLhknL eftrk I 9: 12.0102 27( 15) L-x(3)-L-x(3,4)-R Occurences: 27(15) CSF3_BOVIN : 14- 22: lpqsf LlkcLeqv-R kiqad CSF3_BOVIN : 157- 166: lvasq LhrfLelayR glryl CSF3_CANFA : 15- 23: lpqsf LlkcLeqm-R kvqad CSF3_CANFA : 158- 167: lvasn LqsfLelayR alrhf CSF3_HUMAN : 44- 52: lpqsf LlkcLeqv-R kiqgd CSF3_HUMAN : 190- 199: lvash LqsfLevsyR vlrhl CSF3_MOUSE : 39- 47: vtvsa LppsLplp-R sfllk CSF3_MOUSE : 50- 58: lprsf LlksLeqv-R kiqas CSF3_MOUSE : 193- 201: laisy LqgfLeta-R lalhh IL6_BOVIN : 194- 203: lilrn LenfLqfslR airmk IL6_BOVIN : 198- 206: nlenf LqfsLrai-R mk IL6_CANFA : 193- 202: lilrs LedfLqfslR avrim IL6_CANFA : 197- 205: sledf LqfsLrav-R im IL6_CERTO : 202- 210: sfkef LqssLral-R qm IL6_FELCA : 194- 203: ltlrr LedfLqfslR avrim IL6_FELCA : 198- 206: rledf LqfsLrav-R im IL6_HUMAN : 202- 210: sfkef LqssLral-R qm IL6_MOUSE : 197- 206: filks LeefLkvtlR strqt IL6_MOUSE : 201- 209: sleef LkvtLrst-R qt IL6_MUSVI : 111- 120: lilrs LedfLqfslR airim IL6_MUSVI : 115- 123: sledf LqfsLrai-R im IL6_PIG : 198- 207: lilrs LedfLqfslR airim IL6_PIG : 202- 210: sledf LqfsLrai-R im IL6_RAT : 197- 206: lilka LeefLkvtmR strqt IL6_SHEEP : 194- 203: iilrs LenfLqfslR airmk IL6_SHEEP : 198- 206: slenf LqfsLrai-R mk MGF_CHICK : 39- 47: dfqlf LhknLeft-R kirgd J 10: 12.0102 21( 15) L-x(2)-L-x(2,3)-L Occurences: 21(15) CSF3_BOVIN : 47- 54: chpee LmlLrhsL gipqa CSF3_BOVIN : 75- 82: qlrgc LnqLhggL flyqg CSF3_CANFA : 48- 55: chpee LvlLghaL gipqp CSF3_CANFA : 76- 83: qlmgc LrqLhsgL flyqg CSF3_HUMAN : 12- 18: qspmk LmaLql-L lwhsa CSF3_HUMAN : 12- 19: qspmk LmaLqllL whsal CSF3_HUMAN : 80- 87: chpee LvlLghsL gipwa CSF3_HUMAN : 108- 115: qlagc LsqLhsgL flyqg CSF3_MOUSE : 12- 18: qrrmk LmaLql-L lwqsa CSF3_MOUSE : 12- 19: qrrmk LmaLqllL wqsal CSF3_MOUSE : 83- 90: chpee LvlLghsL gipka CSF3_MOUSE : 111- 118: qqtqc LsqLhsgL clyqg IL6_BOVIN : 191- 198: kiili LrnLenfL qfslr IL6_CANFA : 190- 197: tihli LrsLedfL qfslr IL6_CERTO : 16- 22: pvafs LglLlv-L paafp IL6_FELCA : 191- 198: tihlt LrrLedfL qfslr IL6_HUMAN : 16- 22: pvafs LglLlv-L paafp IL6_MOUSE : 194- 201: tiqfi LksLeefL kvtlr IL6_MUSVI : 108- 115: tihli LrsLedfL qfslr IL6_PIG : 195- 202: kiili LrsLedfL qfslr IL6_RAT : 194- 201: tiqli LkaLeefL kvtmr IL6_SHEEP : 191- 198: kviii LrsLenfL qfslr MGF_CHICK : 195- 201: tayra LrhLar-L K 11: 12.0102 16( 15) L-x(3)-E-x(2,3)-L Occurences: 16(15) CSF3_BOVIN : 41- 49: caahk LchpEelmL lrhsl CSF3_CANFA : 42- 50: cathq LchpEelvL lghal CSF3_HUMAN : 74- 82: catyk LchpEelvL lghsl CSF3_MOUSE : 77- 85: catyk LchpEelvL lghsl IL6_BOVIN : 191- 198: kiili LrnlEnf-L qfslr IL6_CANFA : 190- 197: tihli LrslEdf-L qfslr IL6_CERTO : 119- 126: kiitg LlefEvy-L eylqn IL6_FELCA : 175- 182: glqak LqsqEew-L rhtti IL6_FELCA : 191- 198: tihlt LrrlEdf-L qfslr IL6_HUMAN : 119- 126: kiitg LlefEvy-L eylqn IL6_MOUSE : 194- 201: tiqfi LkslEef-L kvtlr IL6_MUSVI : 108- 115: tihli LrslEdf-L qfslr IL6_PIG : 195- 202: kiili LrslEdf-L qfslr IL6_RAT : 194- 201: tiqli LkalEef-L kvtmr IL6_SHEEP : 191- 198: kviii LrslEnf-L qfslr MGF_CHICK : 66- 74: cdtfq LcteEelqL vqpdp L 12: 12.0102 16( 15) L-x(3,4)-E-x(2)-L Occurences: 16(15) CSF3_BOVIN : 41- 49: caahk LchpeElmL lrhsl CSF3_CANFA : 42- 50: cathq LchpeElvL lghal CSF3_HUMAN : 74- 82: catyk LchpeElvL lghsl CSF3_MOUSE : 77- 85: catyk LchpeElvL lghsl IL6_BOVIN : 191- 198: kiili Lrnl-EnfL qfslr IL6_CANFA : 190- 197: tihli Lrsl-EdfL qfslr IL6_CERTO : 119- 126: kiitg Llef-EvyL eylqn IL6_FELCA : 175- 182: glqak Lqsq-EewL rhtti IL6_FELCA : 191- 198: tihlt Lrrl-EdfL qfslr IL6_HUMAN : 119- 126: kiitg Llef-EvyL eylqn IL6_MOUSE : 194- 201: tiqfi Lksl-EefL kvtlr IL6_MUSVI : 108- 115: tihli Lrsl-EdfL qfslr IL6_PIG : 195- 202: kiili Lrsl-EdfL qfslr IL6_RAT : 194- 201: tiqli Lkal-EefL kvtmr IL6_SHEEP : 191- 198: kviii Lrsl-EnfL qfslr MGF_CHICK : 66- 74: cdtfq LcteeElqL vqpdp M 13: 12.0102 18( 15) Q-x(2)-L-x(2,3)-L Occurences: 18(15) CSF3_BOVIN : 11- 18: arslp QsfLlkcL eqvrk CSF3_BOVIN : 86- 92: glfly QglLqa-L agisp CSF3_CANFA : 12- 19: tgplp QsfLlkcL eqmrk CSF3_CANFA : 87- 93: glfly QglLqa-L agisp CSF3_HUMAN : 41- 48: asslp QsfLlkcL eqvrk CSF3_HUMAN : 119- 125: glfly QglLqa-L egisp CSF3_MOUSE : 122- 128: glcly QglLqa-L sgisp IL6_BOVIN : 123- 129: glley QiyLdy-L qneye IL6_CANFA : 118- 124: glvef QlhLni-L qnnye IL6_CERTO : 203- 209: fkefl QssLra-L rqm IL6_FELCA : 119- 125: glqef QiyLkf-L qdkye IL6_HUMAN : 203- 209: fkefl QssLra-L rqm IL6_MOUSE : 191- 197: rtkti QfiLks-L eeflk IL6_MUSVI : 38- 44: glqef QihLky-L eanye IL6_PIG : 123- 129: glvef QiyLdy-L qkeye IL6_RAT : 191- 197: rtkti QliLka-L eeflk IL6_SHEEP : 123- 129: glley QiyLdf-L qnefe MGF_CHICK : 36- 43: gdhdf QlfLhknL eftrk N 14: 12.0102 18( 15) E-x(2)-L-x(0,1)-L Occurences: 18(15) CSF3_BOVIN : 46- 50: lchpe ElmL-L rhslg CSF3_CANFA : 47- 51: lchpe ElvL-L ghalg CSF3_HUMAN : 79- 83: lchpe ElvL-L ghslg CSF3_MOUSE : 82- 86: lchpe ElvL-L ghslg IL6_BOVIN : 87- 92: ketla EnkLnL pkmee IL6_CANFA : 82- 87: keala EnnLhL pkleg IL6_CANFA : 116- 121: ttglv EfqLhL nilqn IL6_CERTO : 87- 92: keala EnnLnL pkmae IL6_FELCA : 83- 88: keala EnnLnL pklae IL6_HUMAN : 87- 92: keala EnnLnL pkmae IL6_MOUSE : 85- 90: ddala EnnLkL peiqr IL6_MOUSE : 107- 111: tgynq EicL-L kissg IL6_MUSVI : 2- 7: a EnnLkL pklae IL6_PIG : 87- 92: kevla EnnLnL pkmae IL6_RAT : 85- 90: ddals EnnLkL peiqr IL6_RAT : 107- 111: tgynq EicL-L kicsg IL6_SHEEP : 87- 92: ketla EnkLkL pkmee MGF_CHICK : 69- 74: fqlct EeeLqL vqpdp O 15: 11.5102 22( 15) F-x(0,1)-L-x(3,4)-R Occurences: 22(15) CSF3_BOVIN : 160- 166: sqlhr F-LelayR glryl CSF3_CANFA : 161- 167: snlqs F-LelayR alrhf CSF3_HUMAN : 193- 199: shlqs F-LevsyR vlrhl CSF3_MOUSE : 196- 201: sylqg F-Leta-R lalhh IL6_BOVIN : 197- 203: rnlen F-LqfslR airmk IL6_BOVIN : 200- 206: enflq FsLrai-R mk IL6_CANFA : 196- 202: rsled F-LqfslR avrim IL6_CANFA : 199- 205: edflq FsLrav-R im IL6_CERTO : 201- 207: rsfke F-LqsslR alrqm IL6_FELCA : 197- 203: rrled F-LqfslR avrim IL6_FELCA : 200- 206: edflq FsLrav-R im IL6_HUMAN : 201- 207: rsfke F-LqsslR alrqm IL6_MOUSE : 200- 206: kslee F-LkvtlR strqt IL6_MUSVI : 114- 120: rsled F-LqfslR airim IL6_MUSVI : 117- 123: edflq FsLrai-R im IL6_PIG : 201- 207: rsled F-LqfslR airim IL6_PIG : 204- 210: edflq FsLrai-R im IL6_RAT : 200- 206: kalee F-LkvtmR strqt IL6_SHEEP : 197- 203: rslen F-LqfslR airmk IL6_SHEEP : 200- 206: enflq FsLrai-R mk MGF_CHICK : 179- 186: qvggf FiLanfqR fleta MGF_CHICK : 187- 193: anfqr F-LetayR alrhl P 16: 11.5102 28( 15) L-x(0,1)-E-x(1,2)-L Occurences: 28(15) CSF3_BOVIN : 31- 35: adgae LqEr-L caahk CSF3_CANFA : 32- 36: adgta LqEt-L cathq CSF3_HUMAN : 61- 65: gdgaa LqEk-L vseca CSF3_MOUSE : 67- 71: asgsv LlEq-L catyk CSF3_MOUSE : 68- 71: sgsvl L-Eq-L catyk IL6_BOVIN : 85- 90: ssket LaEnkL nlpkm IL6_BOVIN : 194- 198: lilrn L-EnfL qfslr IL6_CANFA : 80- 85: dskea LaEnnL hlpkl IL6_CANFA : 114- 119: rittg LvEfqL hlnil IL6_CANFA : 193- 197: lilrs L-EdfL qfslr IL6_CERTO : 85- 90: stkea LaEnnL nlpkm IL6_CERTO : 126- 129: efevy L-Ey-L qnrfe IL6_FELCA : 81- 86: dskea LaEnnL nlpkl IL6_FELCA : 194- 198: ltlrr L-EdfL qfslr IL6_HUMAN : 85- 90: sskea LaEnnL nlpkm IL6_HUMAN : 126- 129: efevy L-Ey-L qnrfe IL6_MOUSE : 83- 88: nndda LaEnnL klpei IL6_MOUSE : 197- 201: filks LeEf-L kvtlr IL6_MOUSE : 197- 201: filks L-EefL kvtlr IL6_MUSVI : 111- 115: lilrs L-EdfL qfslr IL6_PIG : 85- 90: nskev LaEnnL nlpkm IL6_PIG : 198- 202: lilrs L-EdfL qfslr IL6_RAT : 59- 63: lityv LrEi-L emrke IL6_RAT : 83- 88: nsdda LsEnnL klpei IL6_RAT : 174- 178: tsnal LmEk-L esqke IL6_RAT : 197- 201: lilka LeEf-L kvtmr IL6_RAT : 197- 201: lilka L-EefL kvtmr IL6_SHEEP : 85- 90: nsket LaEnkL klpkm IL6_SHEEP : 194- 198: iilrs L-EnfL qfslr MGF_CHICK : 127- 131: pnhtt LvEt-L qldaa Q 17: 11.5102 23( 15) L-x(4,5)-Q-x(1,2)-L Occurences: 23(15) CSF3_BOVIN : 61- 69: ipqap LsscssQs-L qlrgc CSF3_BOVIN : 84- 92: hgglf LyqgllQa-L agisp CSF3_CANFA : 62- 70: ipqpp LsscssQa-L qlmgc CSF3_CANFA : 85- 93: hsglf LyqgllQa-L agisp CSF3_CANFA : 153- 162: raggv LvasnlQsfL elayr CSF3_HUMAN : 94- 102: ipwap LsscpsQa-L qlagc CSF3_HUMAN : 117- 125: hsglf LyqgllQa-L egisp CSF3_HUMAN : 185- 194: raggv LvashlQsfL evsyr CSF3_MOUSE : 15- 24: mklma LqlllwQsaL wsgre CSF3_MOUSE : 97- 105: ipkas LsgcssQa-L qqtqc CSF3_MOUSE : 120- 128: hsglc LyqgllQa-L sgisp CSF3_MOUSE : 188- 197: raggv LaisylQgfL etarl IL6_BOVIN : 194- 202: lilrn Lenfl-QfsL rairm IL6_CANFA : 193- 201: lilrs Ledfl-QfsL ravri IL6_CERTO : 179- 186: slltk Lqaqn-Qw-L qdmtt IL6_FELCA : 194- 202: ltlrr Ledfl-QfsL ravri IL6_HUMAN : 179- 186: slltk Lqaqn-Qw-L qdmtt IL6_MOUSE : 185- 194: sqkew LrtktiQfiL kslee IL6_MUSVI : 111- 119: lilrs Ledfl-QfsL rairi IL6_PIG : 198- 206: lilrs Ledfl-QfsL rairi IL6_RAT : 185- 194: sqkew LrtktiQliL kalee IL6_SHEEP : 194- 202: iilrs Lenfl-QfsL rairm MGF_CHICK : 14- 21: alalv Lgapw-Qa-L hgapl R 18: 11.5102 22( 15) S-x(4)-L-x(2,4)-L Occurences: 22(15) CSF3_BOVIN : 66- 75: lsscs SqslqLrgc-L nqlhg CSF3_CANFA : 67- 76: lsscs SqalqLmgc-L rqlhs CSF3_HUMAN : 99- 108: lsscp SqalqLagc-L sqlhs CSF3_MOUSE : 63- 71: rkiqa SgsvlLeq--L catyk IL6_BOVIN : 80- 90: ndece SsketLaenkL nlpkm IL6_CANFA : 192- 201: hlilr SledfLqfs-L ravri IL6_CERTO : 80- 90: snmcd StkeaLaennL nlpkm IL6_CERTO : 197- 206: hlilr SfkefLqss-L ralrq IL6_FELCA : 7- 16: tflst SafspLafs-L glllv IL6_FELCA : 142- 150: ksvyt StnvlLqm--L krkgk IL6_HUMAN : 80- 90: snmce SskeaLaennL nlpkm IL6_HUMAN : 197- 206: hlilr SfkefLqss-L ralrq IL6_MOUSE : 49- 59: pvytt SqvggLithvL weive IL6_MOUSE : 196- 205: qfilk SleefLkvt-L rstrq IL6_MUSVI : 61- 69: hsvyi StkhlLqk--L rpmnq IL6_MUSVI : 110- 119: hlilr SledfLqfs-L rairi IL6_PIG : 197- 206: ililr SledfLqfs-L rairi IL6_RAT : 49- 59: pvytt SqvggLityvL reile IL6_SHEEP : 7- 16: nslft SafspLavs-L glllv IL6_SHEEP : 145- 154: vmelq SsirtLiqi-L kekia IL6_SHEEP : 193- 202: iiilr SlenfLqfs-L rairm MGF_CHICK : 113- 121: hayhd SlgavLrl--L pnhtt S 19: 11.5102 19( 15) I-x(4,5)-E-x(1,2)-L Occurences: 19(15) CSF3_BOVIN : 117- 124: dfatn Iwlqm-Ed-L gaapa CSF3_CANFA : 118- 125: dfain Iwqqm-Ed-L gmapa CSF3_HUMAN : 150- 157: dfatt Iwqqm-Ee-L gmapa CSF3_MOUSE : 153- 160: nfatt Iwqqm-En-L gvapt IL6_BOVIN : 190- 198: akiil Ilrnl-EnfL qfslr IL6_CANFA : 110- 119: tcltr IttglvEfqL hlnil IL6_CANFA : 189- 197: ttihl Ilrsl-EdfL qfslr IL6_CERTO : 194- 202: mtthl IlrsfkEf-L qsslr IL6_FELCA : 162- 171: qdevt IpvptvEvgL qaklq IL6_HUMAN : 194- 202: mtthl IlrsfkEf-L qsslr IL6_MOUSE : 193- 201: ktiqf IlksleEf-L kvtlr IL6_MOUSE : 193- 201: ktiqf Ilksl-EefL kvtlr IL6_MUSVI : 107- 115: vtihl Ilrsl-EdfL qfslr IL6_PIG : 194- 202: tkiil Ilrsl-EdfL qfslr IL6_RAT : 55- 63: qvggl ItyvlrEi-L emrke IL6_RAT : 142- 149: dkarv Iqsnt-Et-L vhifk IL6_RAT : 193- 201: ktiql IlkaleEf-L kvtmr IL6_RAT : 193- 201: ktiql Ilkal-EefL kvtmr IL6_SHEEP : 189- 198: nakvi IilrslEnfL qfslr IL6_SHEEP : 190- 198: akvii Ilrsl-EnfL qfslr MGF_CHICK : 142- 149: nlssn Iqqqm-Ed-L gldtv T 20: 11.5102 44( 15) L-x(0,1)-L-x(1,2)-L Occurences: 44(15) CSF3_BOVIN : 14- 18: lpqsf L-LkcL eqvrk CSF3_BOVIN : 88- 92: flyqg L-LqaL agisp CSF3_CANFA : 15- 19: lpqsf L-LkcL eqmrk CSF3_CANFA : 89- 93: flyqg L-LqaL agisp CSF3_HUMAN : 15- 19: mklma LqLl-L whsal CSF3_HUMAN : 44- 48: lpqsf L-LkcL eqvrk CSF3_HUMAN : 121- 125: flyqg L-LqaL egisp CSF3_MOUSE : 15- 19: mklma LqLl-L wqsal CSF3_MOUSE : 50- 54: lprsf L-LksL eqvrk CSF3_MOUSE : 67- 71: asgsv L-LeqL catyk CSF3_MOUSE : 124- 128: clyqg L-LqaL sgisp CSF3_MOUSE : 139- 144: alapt LdLlqL dvanf CSF3_MOUSE : 141- 144: aptld L-Lq-L dvanf CSF3_MOUSE : 202- 207: letar LaLhhL a IL6_BOVIN : 16- 20: pfavs LgLl-L vmtsa IL6_BOVIN : 189- 194: nakii LiLrnL enflq IL6_CANFA : 11- 15: tsafs LgLl-L vmata IL6_CANFA : 85- 90: laenn LhLpkL egkdg IL6_CANFA : 119- 124: lvefq LhLniL qnnye IL6_CANFA : 188- 193: httih LiLrsL edflq IL6_CERTO : 16- 20: pvafs LgLl-L vlpaa IL6_CERTO : 18- 22: afslg LlLv-L paafp IL6_CERTO : 18- 22: afslg L-LlvL paafp IL6_CERTO : 19- 22: fslgl L-Lv-L paafp IL6_CERTO : 175- 179: ttnas L-LtkL qaqnq IL6_FELCA : 16- 20: plafs LgLl-L vvata IL6_FELCA : 86- 91: laenn LnLpkL aekdg IL6_FELCA : 146- 150: tstnv L-LqmL krkgk IL6_FELCA : 189- 194: httih LtLrrL edflq IL6_HUMAN : 16- 20: pvafs LgLl-L vlpaa IL6_HUMAN : 18- 22: afslg LlLv-L paafp IL6_HUMAN : 18- 22: afslg L-LlvL paafp IL6_HUMAN : 19- 22: fslgl L-Lv-L paafp IL6_HUMAN : 175- 179: ttnas L-LtkL qaqnq IL6_MOUSE : 15- 19: hpvaf LgLm-L vttta IL6_MUSVI : 5- 10: aenn LkLpkL aekdk IL6_MUSVI : 65- 69: istkh L-LqkL rpmnq IL6_MUSVI : 106- 111: hvtih LiLrsL edflq IL6_PIG : 16- 20: pvafs LgLl-L vmata IL6_PIG : 175- 179: ttnag L-LdkL qsqne IL6_PIG : 193- 198: ntkii LiLrsL edflq IL6_RAT : 15- 19: qpvaf LgLm-L ltata IL6_RAT : 15- 20: qpvaf LgLmlL tataf IL6_RAT : 192- 197: tktiq LiLkaL eeflk IL6_SHEEP : 16- 20: plavs LgLl-L vmtsa MGF_CHICK : 8- 12: cltpv LaLa-L vlgap MGF_CHICK : 10- 14: tpvla LaLv-L gapwq Number of patterns evaluated by Pratt:610 Total running time: 1 seconds