------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 12 sequences from file INTERLEUKIN_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 12 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename INTERLEUKIN_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: IL2_BOVIN 155 IL2_CAPHI 155 IL2_CERTO 154 IL2_FELCA 154 IL2_HORSE 149 IL2_HUMAN 153 IL2_MERUN 155 IL2_MOUSE 169 IL2_MUSSP 60 IL2_PIG 154 IL2_RAT 155 IL2_SHEEP 155 Pratt run started at Thu Feb 6 20:07:14 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 44.8706 12( 12) M-Y-x(2)-Q-x(0,1)-L-x(1,2)-C-x(2)-L-x-L-x(4)-N-x-A-P-x-S 2: 40.7005 12( 12) Y-x(2)-Q-x(0,1)-L-x(1,2)-C-x(2)-L-x-L-x(4)-N-x-A-P-x-S 3: 36.5305 12( 12) Q-x(0,1)-L-x(1,2)-C-x(2)-L-x-L-x(4)-N-x-A-P-x-S 4: 36.5305 12( 12) Q-x(3)-C-x(2)-L-x-L-x(1,2)-L-x(1,2)-N-x-A-P-x-S 5: 32.3604 12( 12) C-x(2)-L-x-L-x(1,2)-L-x(1,2)-N-x-A-P-x-S 6: 24.5203 12( 12) L-x(4)-N-x-A-P-x-S-x(0,1)-S 7: 24.0203 16( 12) L-x(1,2)-N-x-A-P-x-S-x(0,1)-S 8: 24.0203 16( 12) L-x(2,3)-L-x(1,2)-N-x-A-P-x-S 9: 24.0203 12( 12) L-x(3,4)-L-x(1,2)-N-x-A-P-x-S 10: 20.8503 13( 12) H-L-x(2)-L-x(3)-L-x(2)-L 11: 20.3503 12( 12) N-x-A-P-x-S-x(0,1)-S 12: 19.8503 13( 12) E-x(2,3)-L-x(2)-L-x(1,2)-E-L 13: 19.8503 12( 12) V-L-x(0,1)-L-x(2)-S-x(1,2)-T 14: 19.8503 19( 12) L-x(1,2)-C-x(2)-L-x-L-x(1,2)-L 15: 19.3503 13( 12) L-x(2)-L-x(1,2)-E-L-x(0,2)-L 16: 16.6802 16( 12) L-x(2)-L-Q-x-L 17: 16.1802 12( 12) L-x(2)-D-L-x(2,3)-L 18: 16.1802 22( 12) L-x(3)-L-x(2)-L-x(2,3)-L 19: 16.1802 12( 12) A-P-x-S-x(0,1)-S 20: 15.6802 24( 12) L-x(1,2)-D-L-x(2,3)-L Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 80.5809 12( 12) M-Y-x(2)-Q-x(0,1)-L-x(1,2)-C-[IV]-[AT]-L-[AST]-L-[AIV]-[LV]-[LMV]-[ATV]-N-[GS]-A-P-[AT]-S-[RS]-[PS]-x(3)-[AST] B 2: 76.4108 12( 12) Y-x(2)-Q-x(0,1)-L-x(1,2)-C-[IV]-[AT]-L-[AST]-L-[AIV]-[LV]-[LMV]-[ATV]-N-[GS]-A-P-[AT]-S-[RS]-[PS]-x(3)-[AST] C 3: 72.2408 12( 12) Q-x(0,1)-L-x(1,2)-C-[IV]-[AT]-L-[AST]-L-[AIV]-[LV]-[LMV]-[ATV]-N-[GS]-A-P-[AT]-S-[RS]-[PS]-x(3)-[AST] D 4: 70.5958 12( 12) Q-[LP]-[AL]-[CS]-C-[IV]-[AT]-L-[AST]-L-x(1,2)-L-x(1,2)-N-[GS]-A-P-[AT]-S-[RS]-[PS]-x(3)-[AST] E 5: 56.7777 12( 12) C-[IV]-[AT]-L-[AST]-L-x(1,2)-L-x(1,2)-N-[GS]-A-P-[AT]-S-[RS]-[PS]-x(3)-[AST] F 6: 50.0830 19( 12) L-x(1,2)-C-[IV]-[AT]-L-[AST]-L-x(1,2)-L-x-[ANTV]-[NS]-[AGS]-[AP]-[PT]-[AST]-S G 7: 49.2161 12( 12) L-[AIV]-[LV]-[LMV]-[ATV]-N-[GS]-A-P-[AT]-S-x(0,1)-S-[PST]-x(2)-[ENST]-[AQST] H 8: 42.6956 12( 12) Q-[LP]-[AL]-[CS]-C-[IV]-[AT]-L-[AST]-L-x(1,2)-L-x(1,2)-N I 9: 39.4104 16( 12) L-x(2,3)-L-x(1,2)-N-[GS]-A-P-[AT]-S-[RS]-[PS]-x(3)-[AST] J 10: 39.4104 12( 12) L-x(3,4)-L-x(1,2)-N-[GS]-A-P-[AT]-S-[RS]-[PS]-x(3)-[AST] K 11: 37.4230 16( 12) L-x(1,2)-N-[GS]-A-P-[AT]-S-x(0,1)-S-[PST]-x(2)-[ENST]-[AQST] L 12: 33.7530 12( 12) N-[GS]-A-P-[AT]-S-x(0,1)-S-[PST]-x(2)-[ENST]-[AQST] M 13: 32.4439 12( 12) V-L-x(0,1)-L-x-[GN]-S-x(1,2)-T-x(3)-[ACT]-x(2)-[ADST]-[DNQT]-[AEQS] N 14: 28.8775 12( 12) C-[IV]-[AT]-L-[AST]-L-x(1,2)-L-x(1,2)-N O 15: 27.5878 12( 12) H-L-x(2)-L-x(2)-[DE]-L-x(2)-L-x(3)-[LM] P 16: 26.4024 12( 12) A-P-[AT]-S-x(0,1)-S-[PST]-x(2)-[ENST]-[AQST] Q 17: 26.0183 13( 12) L-x-[CD]-L-x(1,2)-E-L-x(0,2)-L-x(2)-[MV] R 18: 24.8854 13( 12) L-x-[DH]-L-Q-x-L-x-[ERS]-x-[ILMV] S 19: 24.1782 16( 12) L-[EK]-x(2)-L-x-[DEP]-L-x(2,3)-L-x(4)-[DENS] T 20: 23.0405 13( 12) E-x(2,3)-L-x-[CD]-L-x(1,2)-E-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 80.5809 12( 12) M-Y-x(2)-Q-x(0,1)-L-x(1,2)-C-[IV]-[AT]-L-[AST]-L-[AIV]-[LV]-[LMV]-[ATV]-N-[GS]-A-P-[AT]-S-[RS]-[PS]-x(3)-[AST] Occurences: 12(12) IL2_BOVIN : 1- 30: MYkiQlLs-CIALTLALVANGAPTSSStgnT mkevk IL2_BOVIN : 1- 30: MYkiQ-LlsCIALTLALVANGAPTSSStgnT mkevk IL2_CAPHI : 1- 30: MYrmQlLs-CIALTLALVANGAPTSSStgnT mkevk IL2_CAPHI : 1- 30: MYrmQ-LlsCIALTLALVANGAPTSSStgnT mkevk IL2_CERTO : 1- 30: MYrmQlLs-CIALSLALVTNSAPTSRStkkT qlqle IL2_CERTO : 1- 30: MYrmQ-LlsCIALSLALVTNSAPTSRStkkT qlqle IL2_FELCA : 1- 30: MYkiQlLs-CIALTLILVTNSAPASSStkeT qqqle IL2_FELCA : 1- 30: MYkiQ-LlsCIALTLILVTNSAPASSStkeT qqqle IL2_HORSE : 1- 30: MYrmQlLs-CIALTLAVLANSAPTSSSkreT qqqlk IL2_HORSE : 1- 30: MYrmQ-LlsCIALTLAVLANSAPTSSSkreT qqqlk IL2_HUMAN : 1- 30: MYrmQlLs-CIALSLALVTNSAPTSSStkkT qlqle IL2_HUMAN : 1- 30: MYrmQ-LlsCIALSLALVTNSAPTSSStkkT qlqle IL2_MERUN : 1- 30: MYsrQ-LasCVALALVLLANSAPTSSPakeA qqyle IL2_MOUSE : 1- 30: MYsmQ-LasCVTLTLVLLVNSAPTSSStssS taeaq IL2_MUSSP : 1- 30: MYsmQ-LasCVTLTLVLLVNSAPTSSPtssS tssst IL2_PIG : 1- 30: MYkmQlLc-CIALTLALMANGAPTSSStknT kkqle IL2_PIG : 1- 30: MYkmQ-LlcCIALTLALMANGAPTSSStknT kkqle IL2_RAT : 1- 30: MYsmQ-LasCVALTLVLLVNSAPTSSPakeT qqhle IL2_SHEEP : 1- 30: MYkiQpLs-CIALTLALVANGAPTSSStgnT mkevk B 2: 76.4108 12( 12) Y-x(2)-Q-x(0,1)-L-x(1,2)-C-[IV]-[AT]-L-[AST]-L-[AIV]-[LV]-[LMV]-[ATV]-N-[GS]-A-P-[AT]-S-[RS]-[PS]-x(3)-[AST] Occurences: 12(12) IL2_BOVIN : 2- 30: m YkiQlLs-CIALTLALVANGAPTSSStgnT mkevk IL2_BOVIN : 2- 30: m YkiQ-LlsCIALTLALVANGAPTSSStgnT mkevk IL2_CAPHI : 2- 30: m YrmQlLs-CIALTLALVANGAPTSSStgnT mkevk IL2_CAPHI : 2- 30: m YrmQ-LlsCIALTLALVANGAPTSSStgnT mkevk IL2_CERTO : 2- 30: m YrmQlLs-CIALSLALVTNSAPTSRStkkT qlqle IL2_CERTO : 2- 30: m YrmQ-LlsCIALSLALVTNSAPTSRStkkT qlqle IL2_FELCA : 2- 30: m YkiQlLs-CIALTLILVTNSAPASSStkeT qqqle IL2_FELCA : 2- 30: m YkiQ-LlsCIALTLILVTNSAPASSStkeT qqqle IL2_HORSE : 2- 30: m YrmQlLs-CIALTLAVLANSAPTSSSkreT qqqlk IL2_HORSE : 2- 30: m YrmQ-LlsCIALTLAVLANSAPTSSSkreT qqqlk IL2_HUMAN : 2- 30: m YrmQlLs-CIALSLALVTNSAPTSSStkkT qlqle IL2_HUMAN : 2- 30: m YrmQ-LlsCIALSLALVTNSAPTSSStkkT qlqle IL2_MERUN : 2- 30: m YsrQ-LasCVALALVLLANSAPTSSPakeA qqyle IL2_MOUSE : 2- 30: m YsmQ-LasCVTLTLVLLVNSAPTSSStssS taeaq IL2_MUSSP : 2- 30: m YsmQ-LasCVTLTLVLLVNSAPTSSPtssS tssst IL2_PIG : 2- 30: m YkmQlLc-CIALTLALMANGAPTSSStknT kkqle IL2_PIG : 2- 30: m YkmQ-LlcCIALTLALMANGAPTSSStknT kkqle IL2_RAT : 2- 30: m YsmQ-LasCVALTLVLLVNSAPTSSPakeT qqhle IL2_SHEEP : 2- 30: m YkiQpLs-CIALTLALVANGAPTSSStgnT mkevk C 3: 72.2408 12( 12) Q-x(0,1)-L-x(1,2)-C-[IV]-[AT]-L-[AST]-L-[AIV]-[LV]-[LMV]-[ATV]-N-[GS]-A-P-[AT]-S-[RS]-[PS]-x(3)-[AST] Occurences: 12(12) IL2_BOVIN : 5- 30: myki QlLs-CIALTLALVANGAPTSSStgnT mkevk IL2_BOVIN : 5- 30: myki Q-LlsCIALTLALVANGAPTSSStgnT mkevk IL2_CAPHI : 5- 30: myrm QlLs-CIALTLALVANGAPTSSStgnT mkevk IL2_CAPHI : 5- 30: myrm Q-LlsCIALTLALVANGAPTSSStgnT mkevk IL2_CERTO : 5- 30: myrm QlLs-CIALSLALVTNSAPTSRStkkT qlqle IL2_CERTO : 5- 30: myrm Q-LlsCIALSLALVTNSAPTSRStkkT qlqle IL2_FELCA : 5- 30: myki QlLs-CIALTLILVTNSAPASSStkeT qqqle IL2_FELCA : 5- 30: myki Q-LlsCIALTLILVTNSAPASSStkeT qqqle IL2_HORSE : 5- 30: myrm QlLs-CIALTLAVLANSAPTSSSkreT qqqlk IL2_HORSE : 5- 30: myrm Q-LlsCIALTLAVLANSAPTSSSkreT qqqlk IL2_HUMAN : 5- 30: myrm QlLs-CIALSLALVTNSAPTSSStkkT qlqle IL2_HUMAN : 5- 30: myrm Q-LlsCIALSLALVTNSAPTSSStkkT qlqle IL2_MERUN : 5- 30: mysr Q-LasCVALALVLLANSAPTSSPakeA qqyle IL2_MOUSE : 5- 30: mysm Q-LasCVTLTLVLLVNSAPTSSStssS taeaq IL2_MUSSP : 5- 30: mysm Q-LasCVTLTLVLLVNSAPTSSPtssS tssst IL2_PIG : 5- 30: mykm QlLc-CIALTLALMANGAPTSSStknT kkqle IL2_PIG : 5- 30: mykm Q-LlcCIALTLALMANGAPTSSStknT kkqle IL2_RAT : 5- 30: mysm Q-LasCVALTLVLLVNSAPTSSPakeT qqhle IL2_SHEEP : 5- 30: myki QpLs-CIALTLALVANGAPTSSStgnT mkevk D 4: 70.5958 12( 12) Q-[LP]-[AL]-[CS]-C-[IV]-[AT]-L-[AST]-L-x(1,2)-L-x(1,2)-N-[GS]-A-P-[AT]-S-[RS]-[PS]-x(3)-[AST] Occurences: 12(12) IL2_BOVIN : 5- 30: myki QLLSCIALTLa-LvaNGAPTSSStgnT mkevk IL2_CAPHI : 5- 30: myrm QLLSCIALTLa-LvaNGAPTSSStgnT mkevk IL2_CERTO : 5- 30: myrm QLLSCIALSLa-LvtNSAPTSRStkkT qlqle IL2_FELCA : 5- 30: myki QLLSCIALTLi-LvtNSAPASSStkeT qqqle IL2_HORSE : 5- 30: myrm QLLSCIALTLavLa-NSAPTSSSkreT qqqlk IL2_HUMAN : 5- 30: myrm QLLSCIALSLa-LvtNSAPTSSStkkT qlqle IL2_MERUN : 5- 30: mysr QLASCVALALvlLa-NSAPTSSPakeA qqyle IL2_MERUN : 5- 30: mysr QLASCVALALv-LlaNSAPTSSPakeA qqyle IL2_MOUSE : 5- 30: mysm QLASCVTLTLvlLv-NSAPTSSStssS taeaq IL2_MOUSE : 5- 30: mysm QLASCVTLTLv-LlvNSAPTSSStssS taeaq IL2_MUSSP : 5- 30: mysm QLASCVTLTLvlLv-NSAPTSSPtssS tssst IL2_MUSSP : 5- 30: mysm QLASCVTLTLv-LlvNSAPTSSPtssS tssst IL2_PIG : 5- 30: mykm QLLCCIALTLa-LmaNGAPTSSStknT kkqle IL2_RAT : 5- 30: mysm QLASCVALTLvlLv-NSAPTSSPakeT qqhle IL2_RAT : 5- 30: mysm QLASCVALTLv-LlvNSAPTSSPakeT qqhle IL2_SHEEP : 5- 30: myki QPLSCIALTLa-LvaNGAPTSSStgnT mkevk E 5: 56.7777 12( 12) C-[IV]-[AT]-L-[AST]-L-x(1,2)-L-x(1,2)-N-[GS]-A-P-[AT]-S-[RS]-[PS]-x(3)-[AST] Occurences: 12(12) IL2_BOVIN : 9- 30: iqlls CIALTLa-LvaNGAPTSSStgnT mkevk IL2_CAPHI : 9- 30: mqlls CIALTLa-LvaNGAPTSSStgnT mkevk IL2_CERTO : 9- 30: mqlls CIALSLa-LvtNSAPTSRStkkT qlqle IL2_FELCA : 9- 30: iqlls CIALTLi-LvtNSAPASSStkeT qqqle IL2_HORSE : 9- 30: mqlls CIALTLavLa-NSAPTSSSkreT qqqlk IL2_HUMAN : 9- 30: mqlls CIALSLa-LvtNSAPTSSStkkT qlqle IL2_MERUN : 9- 30: rqlas CVALALvlLa-NSAPTSSPakeA qqyle IL2_MERUN : 9- 30: rqlas CVALALv-LlaNSAPTSSPakeA qqyle IL2_MOUSE : 9- 30: mqlas CVTLTLvlLv-NSAPTSSStssS taeaq IL2_MOUSE : 9- 30: mqlas CVTLTLv-LlvNSAPTSSStssS taeaq IL2_MUSSP : 9- 30: mqlas CVTLTLvlLv-NSAPTSSPtssS tssst IL2_MUSSP : 9- 30: mqlas CVTLTLv-LlvNSAPTSSPtssS tssst IL2_PIG : 9- 30: mqllc CIALTLa-LmaNGAPTSSStknT kkqle IL2_RAT : 9- 30: mqlas CVALTLvlLv-NSAPTSSPakeT qqhle IL2_RAT : 9- 30: mqlas CVALTLv-LlvNSAPTSSPakeT qqhle IL2_SHEEP : 9- 30: iqpls CIALTLa-LvaNGAPTSSStgnT mkevk F 6: 50.0830 19( 12) L-x(1,2)-C-[IV]-[AT]-L-[AST]-L-x(1,2)-L-x-[ANTV]-[NS]-[AGS]-[AP]-[PT]-[AST]-S Occurences: 19(12) IL2_BOVIN : 6- 24: mykiq LlsCIALTLa-LvANGAPTS sstgn IL2_BOVIN : 7- 24: ykiql Ls-CIALTLa-LvANGAPTS sstgn IL2_CAPHI : 6- 24: myrmq LlsCIALTLa-LvANGAPTS sstgn IL2_CAPHI : 7- 24: yrmql Ls-CIALTLa-LvANGAPTS sstgn IL2_CERTO : 6- 24: myrmq LlsCIALSLa-LvTNSAPTS rstkk IL2_CERTO : 7- 24: yrmql Ls-CIALSLa-LvTNSAPTS rstkk IL2_FELCA : 6- 24: mykiq LlsCIALTLi-LvTNSAPAS sstke IL2_FELCA : 7- 24: ykiql Ls-CIALTLi-LvTNSAPAS sstke IL2_HORSE : 6- 25: myrmq LlsCIALTLavLaNSAPTSS skret IL2_HORSE : 7- 25: yrmql Ls-CIALTLavLaNSAPTSS skret IL2_HUMAN : 6- 24: myrmq LlsCIALSLa-LvTNSAPTS sstkk IL2_HUMAN : 7- 24: yrmql Ls-CIALSLa-LvTNSAPTS sstkk IL2_MERUN : 6- 24: mysrq LasCVALALv-LlANSAPTS spake IL2_MERUN : 6- 25: mysrq LasCVALALvlLaNSAPTSS pakea IL2_MOUSE : 6- 24: mysmq LasCVTLTLv-LlVNSAPTS sstss IL2_MOUSE : 6- 25: mysmq LasCVTLTLvlLvNSAPTSS stsss IL2_MUSSP : 6- 24: mysmq LasCVTLTLv-LlVNSAPTS sptss IL2_MUSSP : 6- 25: mysmq LasCVTLTLvlLvNSAPTSS ptsss IL2_PIG : 6- 24: mykmq LlcCIALTLa-LmANGAPTS sstkn IL2_PIG : 7- 24: ykmql Lc-CIALTLa-LmANGAPTS sstkn IL2_RAT : 6- 24: mysmq LasCVALTLv-LlVNSAPTS spake IL2_RAT : 6- 25: mysmq LasCVALTLvlLvNSAPTSS paket IL2_SHEEP : 7- 24: ykiqp Ls-CIALTLa-LvANGAPTS sstgn G 7: 49.2161 12( 12) L-[AIV]-[LV]-[LMV]-[ATV]-N-[GS]-A-P-[AT]-S-x(0,1)-S-[PST]-x(2)-[ENST]-[AQST] Occurences: 12(12) IL2_BOVIN : 14- 30: cialt LALVANGAPTS-SStgNT mkevk IL2_CAPHI : 14- 30: cialt LALVANGAPTS-SStgNT mkevk IL2_CERTO : 14- 31: cials LALVTNSAPTSrSTkkTQ lqleh IL2_FELCA : 14- 30: cialt LILVTNSAPAS-SStkET qqqle IL2_FELCA : 14- 31: cialt LILVTNSAPASsSTkeTQ qqleq IL2_HORSE : 14- 30: cialt LAVLANSAPTS-SSkrET qqqlk IL2_HUMAN : 14- 31: cials LALVTNSAPTSsSTkkTQ lqleh IL2_MERUN : 14- 30: cvala LVLLANSAPTS-SPakEA qqyle IL2_MOUSE : 14- 30: cvtlt LVLLVNSAPTS-SStsSS taeaq IL2_MOUSE : 14- 31: cvtlt LVLLVNSAPTSsSTssST aeaqq IL2_MUSSP : 14- 30: cvtlt LVLLVNSAPTS-SPtsSS tssst IL2_PIG : 14- 30: cialt LALMANGAPTS-SStkNT kkqle IL2_RAT : 14- 30: cvalt LVLLVNSAPTS-SPakET qqhle IL2_SHEEP : 14- 30: cialt LALVANGAPTS-SStgNT mkevk H 8: 42.6956 12( 12) Q-[LP]-[AL]-[CS]-C-[IV]-[AT]-L-[AST]-L-x(1,2)-L-x(1,2)-N Occurences: 12(12) IL2_BOVIN : 5- 19: myki QLLSCIALTLa-LvaN gapts IL2_CAPHI : 5- 19: myrm QLLSCIALTLa-LvaN gapts IL2_CERTO : 5- 19: myrm QLLSCIALSLa-LvtN sapts IL2_FELCA : 5- 19: myki QLLSCIALTLi-LvtN sapas IL2_HORSE : 5- 19: myrm QLLSCIALTLavLa-N sapts IL2_HUMAN : 5- 19: myrm QLLSCIALSLa-LvtN sapts IL2_MERUN : 5- 19: mysr QLASCVALALvlLa-N sapts IL2_MERUN : 5- 19: mysr QLASCVALALv-LlaN sapts IL2_MOUSE : 5- 19: mysm QLASCVTLTLvlLv-N sapts IL2_MOUSE : 5- 19: mysm QLASCVTLTLv-LlvN sapts IL2_MUSSP : 5- 19: mysm QLASCVTLTLvlLv-N sapts IL2_MUSSP : 5- 19: mysm QLASCVTLTLv-LlvN sapts IL2_PIG : 5- 19: mykm QLLCCIALTLa-LmaN gapts IL2_RAT : 5- 19: mysm QLASCVALTLvlLv-N sapts IL2_RAT : 5- 19: mysm QLASCVALTLv-LlvN sapts IL2_SHEEP : 5- 19: myki QPLSCIALTLa-LvaN gapts I 9: 39.4104 16( 12) L-x(2,3)-L-x(1,2)-N-[GS]-A-P-[AT]-S-[RS]-[PS]-x(3)-[AST] Occurences: 16(12) IL2_BOVIN : 12- 30: lscia LtlaLvaNGAPTSSStgnT mkevk IL2_CAPHI : 12- 30: lscia LtlaLvaNGAPTSSStgnT mkevk IL2_CERTO : 12- 30: lscia LslaLvtNSAPTSRStkkT qlqle IL2_FELCA : 12- 30: lscia LtliLvtNSAPASSStkeT qqqle IL2_HORSE : 14- 30: cialt Lav-La-NSAPTSSSkreT qqqlk IL2_HUMAN : 12- 30: lscia LslaLvtNSAPTSSStkkT qlqle IL2_MERUN : 12- 30: ascva LalvLlaNSAPTSSPakeA qqyle IL2_MERUN : 14- 30: cvala Lvl-La-NSAPTSSPakeA qqyle IL2_MOUSE : 12- 30: ascvt LtlvLlvNSAPTSSStssS taeaq IL2_MOUSE : 14- 30: cvtlt Lvl-Lv-NSAPTSSStssS taeaq IL2_MUSSP : 12- 30: ascvt LtlvLlvNSAPTSSPtssS tssst IL2_MUSSP : 14- 30: cvtlt Lvl-Lv-NSAPTSSPtssS tssst IL2_PIG : 12- 30: lccia LtlaLmaNGAPTSSStknT kkqle IL2_RAT : 12- 30: ascva LtlvLlvNSAPTSSPakeT qqhle IL2_RAT : 14- 30: cvalt Lvl-Lv-NSAPTSSPakeT qqhle IL2_SHEEP : 12- 30: lscia LtlaLvaNGAPTSSStgnT mkevk J 10: 39.4104 12( 12) L-x(3,4)-L-x(1,2)-N-[GS]-A-P-[AT]-S-[RS]-[PS]-x(3)-[AST] Occurences: 12(12) IL2_BOVIN : 12- 30: lscia Ltla-LvaNGAPTSSStgnT mkevk IL2_CAPHI : 12- 30: lscia Ltla-LvaNGAPTSSStgnT mkevk IL2_CERTO : 12- 30: lscia Lsla-LvtNSAPTSRStkkT qlqle IL2_FELCA : 12- 30: lscia Ltli-LvtNSAPASSStkeT qqqle IL2_HORSE : 12- 30: lscia LtlavLa-NSAPTSSSkreT qqqlk IL2_HUMAN : 12- 30: lscia Lsla-LvtNSAPTSSStkkT qlqle IL2_MERUN : 12- 30: ascva LalvlLa-NSAPTSSPakeA qqyle IL2_MERUN : 12- 30: ascva Lalv-LlaNSAPTSSPakeA qqyle IL2_MOUSE : 12- 30: ascvt LtlvlLv-NSAPTSSStssS taeaq IL2_MOUSE : 12- 30: ascvt Ltlv-LlvNSAPTSSStssS taeaq IL2_MUSSP : 12- 30: ascvt LtlvlLv-NSAPTSSPtssS tssst IL2_MUSSP : 12- 30: ascvt Ltlv-LlvNSAPTSSPtssS tssst IL2_PIG : 12- 30: lccia Ltla-LmaNGAPTSSStknT kkqle IL2_RAT : 12- 30: ascva LtlvlLv-NSAPTSSPakeT qqhle IL2_RAT : 12- 30: ascva Ltlv-LlvNSAPTSSPakeT qqhle IL2_SHEEP : 12- 30: lscia Ltla-LvaNGAPTSSStgnT mkevk K 11: 37.4230 16( 12) L-x(1,2)-N-[GS]-A-P-[AT]-S-x(0,1)-S-[PST]-x(2)-[ENST]-[AQST] Occurences: 16(12) IL2_BOVIN : 16- 30: altla LvaNGAPTS-SStgNT mkevk IL2_CAPHI : 16- 30: altla LvaNGAPTS-SStgNT mkevk IL2_CERTO : 16- 31: alsla LvtNSAPTSrSTkkTQ lqleh IL2_FELCA : 16- 30: altli LvtNSAPAS-SStkET qqqle IL2_FELCA : 16- 31: altli LvtNSAPASsSTkeTQ qqleq IL2_HORSE : 17- 30: ltlav La-NSAPTS-SSkrET qqqlk IL2_HUMAN : 16- 31: alsla LvtNSAPTSsSTkkTQ lqleh IL2_MERUN : 16- 30: alalv LlaNSAPTS-SPakEA qqyle IL2_MERUN : 17- 30: lalvl La-NSAPTS-SPakEA qqyle IL2_MOUSE : 16- 30: tltlv LlvNSAPTS-SStsSS taeaq IL2_MOUSE : 16- 31: tltlv LlvNSAPTSsSTssST aeaqq IL2_MOUSE : 17- 30: ltlvl Lv-NSAPTS-SStsSS taeaq IL2_MOUSE : 17- 31: ltlvl Lv-NSAPTSsSTssST aeaqq IL2_MUSSP : 16- 30: tltlv LlvNSAPTS-SPtsSS tssst IL2_MUSSP : 17- 30: ltlvl Lv-NSAPTS-SPtsSS tssst IL2_PIG : 16- 30: altla LmaNGAPTS-SStkNT kkqle IL2_RAT : 16- 30: altlv LlvNSAPTS-SPakET qqhle IL2_RAT : 17- 30: ltlvl Lv-NSAPTS-SPakET qqhle IL2_SHEEP : 16- 30: altla LvaNGAPTS-SStgNT mkevk L 12: 33.7530 12( 12) N-[GS]-A-P-[AT]-S-x(0,1)-S-[PST]-x(2)-[ENST]-[AQST] Occurences: 12(12) IL2_BOVIN : 19- 30: lalva NGAPTS-SStgNT mkevk IL2_CAPHI : 19- 30: lalva NGAPTS-SStgNT mkevk IL2_CERTO : 19- 31: lalvt NSAPTSrSTkkTQ lqleh IL2_FELCA : 19- 30: lilvt NSAPAS-SStkET qqqle IL2_FELCA : 19- 31: lilvt NSAPASsSTkeTQ qqleq IL2_HORSE : 19- 30: lavla NSAPTS-SSkrET qqqlk IL2_HUMAN : 19- 31: lalvt NSAPTSsSTkkTQ lqleh IL2_MERUN : 19- 30: lvlla NSAPTS-SPakEA qqyle IL2_MOUSE : 19- 30: lvllv NSAPTS-SStsSS taeaq IL2_MOUSE : 19- 31: lvllv NSAPTSsSTssST aeaqq IL2_MUSSP : 19- 30: lvllv NSAPTS-SPtsSS tssst IL2_PIG : 19- 30: lalma NGAPTS-SStkNT kkqle IL2_RAT : 19- 30: lvllv NSAPTS-SPakET qqhle IL2_SHEEP : 19- 30: lalva NGAPTS-SStgNT mkevk M 13: 32.4439 12( 12) V-L-x(0,1)-L-x-[GN]-S-x(1,2)-T-x(3)-[ACT]-x(2)-[ADST]-[DNQT]-[AEQS] Occurences: 12(12) IL2_BOVIN : 115- 132: nikri VLeLqGSe-TrftCeyDDA tvnav IL2_CAPHI : 115- 132: slkgi VLeLqGSe-TrftCeyDDA tvkav IL2_CERTO : 114- 131: ninvi VLeLkGSe-TtlmCeyADE tativ IL2_FELCA : 114- 131: ninvt VLkLkGSe-TrftCnyDDE tativ IL2_HORSE : 109- 126: ninvt VLgLkGSe-TrftCeyDNE tetiv IL2_HUMAN : 113- 130: ninvi VLeLkGSe-TtfmCeyADE tativ IL2_MERUN : 15- 32: valal VL-LaNSapTsspAkeAQQ yleql IL2_MOUSE : 15- 32: vtltl VL-LvNSapTsssTssSTA eaqqq IL2_MUSSP : 15- 32: vtltl VL-LvNSapTsspTssSTS sstae IL2_PIG : 114- 131: ninvt VLeLkGSe-TsfkCeyDDE tvtav IL2_RAT : 15- 32: valtl VL-LvNSapTsspAkeTQQ hleql IL2_SHEEP : 115- 132: nikri VLeLqGSe-TrftCeyDDA tvkav N 14: 28.8775 12( 12) C-[IV]-[AT]-L-[AST]-L-x(1,2)-L-x(1,2)-N Occurences: 12(12) IL2_BOVIN : 9- 19: iqlls CIALTLa-LvaN gapts IL2_CAPHI : 9- 19: mqlls CIALTLa-LvaN gapts IL2_CERTO : 9- 19: mqlls CIALSLa-LvtN sapts IL2_FELCA : 9- 19: iqlls CIALTLi-LvtN sapas IL2_HORSE : 9- 19: mqlls CIALTLavLa-N sapts IL2_HUMAN : 9- 19: mqlls CIALSLa-LvtN sapts IL2_MERUN : 9- 19: rqlas CVALALvlLa-N sapts IL2_MERUN : 9- 19: rqlas CVALALv-LlaN sapts IL2_MOUSE : 9- 19: mqlas CVTLTLvlLv-N sapts IL2_MOUSE : 9- 19: mqlas CVTLTLv-LlvN sapts IL2_MUSSP : 9- 19: mqlas CVTLTLvlLv-N sapts IL2_MUSSP : 9- 19: mqlas CVTLTLv-LlvN sapts IL2_PIG : 9- 19: mqllc CIALTLa-LmaN gapts IL2_RAT : 9- 19: mqlas CVALTLvlLv-N sapts IL2_RAT : 9- 19: mqlas CVALTLv-LlvN sapts IL2_SHEEP : 9- 19: iqpls CIALTLa-LvaN gapts O 15: 27.5878 12( 12) H-L-x(2)-L-x(2)-[DE]-L-x(2)-L-x(3)-[LM] Occurences: 12(12) IL2_BOVIN : 76- 91: atelk HLkcLleELklLeevL nlaps IL2_CAPHI : 76- 91: dtelk HLkcLleELklLedvL dlaps IL2_CERTO : 75- 90: atelk HLqcLeeELkpLeevL nlaqs IL2_FELCA : 75- 90: atelt HLqcLveELkpLeevL ylaqs IL2_HORSE : 75- 90: atelk HLqcLeeELkpLeemL knfls IL2_HUMAN : 75- 90: atelk HLqcLeeELkpLeevL nlaqs IL2_MERUN : 75- 90: atelk HLqcLeeELgpLhdvL nlvqs IL2_MOUSE : 47- 62: qqqqq HLeqLlmDLqeLlsrM enyrn IL2_MUSSP : 44- 59: qqqqq HLeqLlmDLqeLlsrM e IL2_PIG : 75- 90: atelk HLqcLveELkaLegvL nlgqs IL2_RAT : 75- 90: atelk HLqcLenELgaLqrvL dltqs IL2_SHEEP : 76- 91: atelk HLkcLleELklLeevL dlaps P 16: 26.4024 12( 12) A-P-[AT]-S-x(0,1)-S-[PST]-x(2)-[ENST]-[AQST] Occurences: 12(12) IL2_BOVIN : 21- 30: lvang APTS-SStgNT mkevk IL2_CAPHI : 21- 30: lvang APTS-SStgNT mkevk IL2_CERTO : 21- 31: lvtns APTSrSTkkTQ lqleh IL2_FELCA : 21- 30: lvtns APAS-SStkET qqqle IL2_FELCA : 21- 31: lvtns APASsSTkeTQ qqleq IL2_HORSE : 21- 30: vlans APTS-SSkrET qqqlk IL2_HUMAN : 21- 31: lvtns APTSsSTkkTQ lqleh IL2_MERUN : 21- 30: llans APTS-SPakEA qqyle IL2_MOUSE : 21- 30: llvns APTS-SStsSS taeaq IL2_MOUSE : 21- 31: llvns APTSsSTssST aeaqq IL2_MUSSP : 21- 30: llvns APTS-SPtsSS tssst IL2_PIG : 21- 30: lmang APTS-SStkNT kkqle IL2_RAT : 21- 30: llvns APTS-SPakET qqhle IL2_SHEEP : 21- 30: lvang APTS-SStgNT mkevk Q 17: 26.0183 13( 12) L-x-[CD]-L-x(1,2)-E-L-x(0,2)-L-x(2)-[MV] Occurences: 13(12) IL2_BOVIN : 77- 90: telkh LkCLleELklLeeV lnlap IL2_CAPHI : 77- 90: telkh LkCLleELklLedV ldlap IL2_CERTO : 76- 89: telkh LqCLeeELkpLeeV lnlaq IL2_FELCA : 76- 89: telth LqCLveELkpLeeV lylaq IL2_HORSE : 76- 89: telkh LqCLeeELkpLeeM lknfl IL2_HUMAN : 76- 89: telkh LqCLeeELkpLeeV lnlaq IL2_MERUN : 76- 89: telkh LqCLeeELgpLhdV lnlvq IL2_MOUSE : 52- 62: hleql LmDLq-EL--LsrM enyrn IL2_MOUSE : 90- 103: telkd LqCLedELgpLrhV ldltq IL2_MUSSP : 49- 59: hleql LmDLq-EL--LsrM e IL2_PIG : 76- 89: telkh LqCLveELkaLegV lnlgq IL2_RAT : 76- 89: telkh LqCLenELgaLqrV ldltq IL2_SHEEP : 77- 90: telkh LkCLleELklLeeV ldlap R 18: 24.8854 13( 12) L-x-[DH]-L-Q-x-L-x-[ERS]-x-[ILMV] Occurences: 13(12) IL2_BOVIN : 38- 48: evksl LlDLQlLlEkV knpen IL2_CAPHI : 38- 48: evksl LlDLQlLlEkV knlen IL2_CERTO : 73- 83: kkate LkHLQcLeEeL kplee IL2_FELCA : 73- 83: kkate LtHLQcLvEeL kplee IL2_HORSE : 73- 83: kkate LkHLQcLeEeL kplee IL2_HUMAN : 73- 83: kkate LkHLQcLeEeL kplee IL2_MERUN : 38- 48: yleql LlDLQqLlRgI nnykn IL2_MERUN : 73- 83: rkate LkHLQcLeEeL gplhd IL2_MOUSE : 52- 62: hleql LmDLQeLlSrM enyrn IL2_MUSSP : 49- 59: hleql LmDLQeLlSrM e IL2_PIG : 73- 83: kqate LkHLQcLvEeL kaleg IL2_RAT : 38- 48: hleql LlDLQvLlRgI dnykn IL2_SHEEP : 38- 48: evksl LlDLQlLlEkV knpen S 19: 24.1782 16( 12) L-[EK]-x(2)-L-x-[DEP]-L-x(2,3)-L-x(4)-[DENS] Occurences: 16(12) IL2_BOVIN : 77- 92: telkh LKclLeELkl-LeevlN lapsk IL2_CAPHI : 77- 92: telkh LKclLeELkl-LedvlD lapsk IL2_CERTO : 34- 50: ktqlq LEhlLlDLqmiLnginN yknpk IL2_CERTO : 79- 95: khlqc LEeeLkPLeevLnlaqS knfhl IL2_FELCA : 34- 49: etqqq LEqlLlDLrl-LlngvN npenp IL2_FELCA : 34- 50: etqqq LEqlLlDLrllLngvnN penpk IL2_HORSE : 79- 95: khlqc LEeeLkPLeemLknflS kdike IL2_HUMAN : 34- 50: ktqlq LEhlLlDLqmiLnginN yknpk IL2_HUMAN : 79- 95: khlqc LEeeLkPLeevLnlaqS knfhl IL2_MERUN : 34- 49: eaqqy LEqlLlDLqq-LlrgiN nyknp IL2_MERUN : 34- 50: eaqqy LEqlLlDLqqlLrginN yknpk IL2_MERUN : 79- 95: khlqc LEeeLgPLhdvLnlvqS knlyl IL2_MOUSE : 48- 63: qqqqh LEqlLmDLqe-LlsrmE nyrnl IL2_MOUSE : 48- 64: qqqqh LEqlLmDLqelLsrmeN yrnlk IL2_MOUSE : 93- 109: kdlqc LEdeLgPLrhvLdltqS ksfql IL2_MUSSP : 45- 60: qqqqh LEqlLmDLqe-LlsrmE IL2_PIG : 34- 50: ntkkq LEplLlDLqllLkevkN yenad IL2_RAT : 34- 49: etqqh LEqlLlDLqv-LlrgiD nyknl IL2_RAT : 34- 50: etqqh LEqlLlDLqvlLrgidN yknlk IL2_SHEEP : 77- 92: telkh LKclLeELkl-LeevlD lapsk T 20: 23.0405 13( 12) E-x(2,3)-L-x-[CD]-L-x(1,2)-E-L Occurences: 13(12) IL2_BOVIN : 73- 84: kvnat ElkhLkCLleEL kllee IL2_CAPHI : 73- 84: kvndt ElkhLkCLleEL klled IL2_CERTO : 72- 83: pkkat ElkhLqCLeeEL kplee IL2_FELCA : 72- 83: pkkat ElthLqCLveEL kplee IL2_HORSE : 72- 83: pkkat ElkhLqCLeeEL kplee IL2_HUMAN : 72- 83: pkkat ElkhLqCLeeEL kplee IL2_MERUN : 72- 83: prkat ElkhLqCLeeEL gplhd IL2_MOUSE : 49- 58: qqqhl Eql-LmDLq-EL lsrme IL2_MOUSE : 86- 97: pkqat ElkdLqCLedEL gplrh IL2_MUSSP : 46- 55: qqqhl Eql-LmDLq-EL lsrme IL2_PIG : 72- 83: pkqat ElkhLqCLveEL kaleg IL2_RAT : 72- 83: pkqat ElkhLqCLenEL galqr IL2_SHEEP : 73- 84: kvnat ElkhLkCLleEL kllee Number of patterns evaluated by Pratt:1124 Total running time: 0 seconds