------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 19 sequences from file INTERLEUKIN_1 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 19 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename INTERLEUKIN_1.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: IL1A_BOVIN 268 IL1A_CERTO 271 IL1A_HUMAN 271 IL1A_MOUSE 270 IL1A_PIG 270 IL1A_RABIT 267 IL1A_RAT 270 IL1B_BOVIN 266 IL1B_CERTO 269 IL1B_FELCA 267 IL1B_HUMAN 269 IL1B_MOUSE 269 IL1B_PIG 267 IL1B_RABIT 268 IL1B_SHEEP 266 IL1X_HUMAN 177 IL1X_MOUSE 178 IL1X_RABIT 177 IL1X_RAT 178 Pratt run started at Thu Feb 6 20:07:08 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 16.1802 20( 19) E-x(2,3)-P-V-x-L 2: 12.5102 34( 19) P-V-x-L 3: 12.5102 19( 19) S-x(3)-P-x(5)-T 4: 12.0102 19( 19) E-x(0,1)-D-x-P 5: 12.0102 19( 19) P-x(4)-E-x(3,4)-P 6: 12.0102 24( 19) K-x(2,3)-K-R 7: 12.0102 33( 19) K-x(2,3)-L-S 8: 12.0102 35( 19) P-x(0,1)-V-x-L 9: 12.0102 22( 19) L-x(0,1)-A-x(2)-L 10: 11.5102 27( 19) F-x(0,1)-E-x(0,1)-D 11: 11.5102 31( 19) D-x(1,2)-P-x(2,3)-L 12: 11.5102 36( 19) D-x(2,4)-S-L 13: 11.5102 24( 19) L-S-x(1,3)-K 14: 11.5102 22( 19) L-x(2,3)-V-x(2,3)-D 15: 11.5102 24( 19) L-x(0,1)-L-x(0,1)-E 16: 11.5102 21( 19) L-x(3,4)-V-x(2,3)-D 17: 11.5102 23( 19) L-x(3,5)-K-S 18: 11.5102 27( 19) G-x(3,4)-K-x(2,3)-L 19: 11.5102 31( 19) L-x(2,3)-E-x(3,4)-P 20: 11.5102 25( 19) L-x-L-x(1,3)-S Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 18.4791 19( 19) S-x(3)-P-x(3)-[IL]-[ACS]-T B 2: 16.3362 19( 19) L-x(0,1)-L-x(0,1)-E-x-[ILPV]-[DEN] C 3: 16.1802 20( 19) E-x(2,3)-P-V-x-L D 4: 15.5771 19( 19) E-x(0,1)-D-x-P-x(2)-[LM] E 5: 15.1820 19( 19) P-[TV]-x(3)-E-x(3,4)-P F 6: 14.7419 22( 19) G-x(3,4)-K-x(2,3)-L-[QS] G 7: 14.6813 22( 19) D-x(1,2)-P-x(2,3)-L-x(3)-[DP] H 8: 13.9305 19( 19) L-x(0,1)-A-x(2)-L-x-[GNQST] I 9: 13.8998 30( 19) K-x(2,3)-L-S-x-[ANSTV] J 10: 13.7077 24( 19) D-x(2,4)-S-L-[NSTV] K 11: 13.4254 22( 19) L-S-x(1,3)-K-[DEGQS] L 12: 12.5102 34( 19) P-V-x-L M 13: 12.0102 24( 19) K-x(2,3)-K-R N 14: 12.0102 35( 19) P-x(0,1)-V-x-L O 15: 11.5102 27( 19) F-x(0,1)-E-x(0,1)-D P 16: 11.5102 22( 19) L-x(2,3)-V-x(2,3)-D Q 17: 11.5102 24( 19) L-x(0,1)-L-x(0,1)-E R 18: 11.5102 21( 19) L-x(3,4)-V-x(2,3)-D S 19: 11.5102 23( 19) L-x(3,5)-K-S T 20: 11.5102 27( 19) G-x(3,4)-K-x(2,3)-L Best patterns with alignements: fitness hits(seqs) Pattern A 1: 18.4791 19( 19) S-x(3)-P-x(3)-[IL]-[ACS]-T Occurences: 19(19) IL1A_BOVIN : 235- 245: mdyfk SvahPklfIAT kqekl IL1A_CERTO : 236- 246: knyfi SvahPnlfIAT khdnw IL1A_HUMAN : 236- 246: knyft SvahPnlfIAT kqdyw IL1A_MOUSE : 239- 249: knyft SaayPelfIAT keqsr IL1A_PIG : 235- 245: mdyfk SaahPklfIAT rqekl IL1A_RABIT : 236- 246: knyfk SaanPqlfIAT kpehl IL1A_RAT : 239- 249: knyft SaafPellIAT keqsq IL1B_BOVIN : 227- 237: tvefe SvlyPnwyIST sqiee IL1B_CERTO : 230- 240: klece SaqfPnwyIST sqaen IL1B_FELCA : 229- 239: nvefe SsqfPnwyIST sqaee IL1B_HUMAN : 230- 240: klefe SaqfPnwyIST sqaen IL1B_MOUSE : 231- 241: kvefe SaefPnwyIST sqaeh IL1B_PIG : 228- 238: rvefe SalyPnwyIST sqaeq IL1B_RABIT : 229- 239: klefe SaqfPnwyIST sqtey IL1B_SHEEP : 227- 237: tvefe SvlyPnwyIST sqiee IL1X_HUMAN : 138- 148: ttsfe SaacPgwfLCT amead IL1X_MOUSE : 139- 149: ttsfe SaacPgwfLCT tlead IL1X_RABIT : 138- 148: tttfe SascPgwfLCT alead IL1X_RAT : 139- 149: ttsfe SlacPgwfLCT tlead B 2: 16.3362 19( 19) L-x(0,1)-L-x(0,1)-E-x-[ILPV]-[DEN] Occurences: 19(19) IL1A_BOVIN : 203- 209: edepv L-LkEmPE tpkii IL1A_CERTO : 203- 209: edqpv L-LkEmPE ipktt IL1A_HUMAN : 203- 209: edqpv L-LkEmPE ipkti IL1A_MOUSE : 206- 212: edqpv L-LkElPE tpkli IL1A_PIG : 203- 209: edepv L-LkElPE tpkti IL1A_RABIT : 203- 209: edepv L-LkEmPE tprii IL1A_RAT : 206- 212: edkpv L-LkEiPE tpkli IL1B_BOVIN : 193- 199: gdtpt LqL-EeVD pkvyp IL1B_CERTO : 196- 202: ddkpt LqL-EsVD pknyp IL1B_FELCA : 195- 201: dgkpt LqL-EmLD pkvyp IL1B_HUMAN : 196- 202: ddkpt LqL-EsVD pknyp IL1B_MOUSE : 197- 203: dgtpt LqL-EsVD pkqyp IL1B_PIG : 194- 200: dntpt LqL-EdID pkryp IL1B_RABIT : 195- 201: ddkpt LqL-EsVD pnryp IL1B_SHEEP : 193- 199: gdtpt LqL-EeVD pkvyp IL1X_HUMAN : 103- 109: gdetr LqL-EaVN itdls IL1X_MOUSE : 104- 110: gddik LqL-EeVN itdls IL1X_RABIT : 103- 109: gdkmk LhL-EaVN itdlg IL1X_RAT : 104- 110: gddtk LqL-EeVN itdln C 3: 16.1802 20( 19) E-x(2,3)-P-V-x-L Occurences: 20(19) IL1A_BOVIN : 198- 204: vsaqn Ede-PVlL kempe IL1A_CERTO : 198- 204: vsaqd Edq-PVlL kempe IL1A_HUMAN : 198- 204: vtaqd Edq-PVlL kempe IL1A_MOUSE : 201- 207: vsaqg Edq-PVlL kelpe IL1A_PIG : 198- 204: vsaqn Ede-PVlL kelpe IL1A_RABIT : 198- 204: vsaqn Ede-PVlL kempe IL1A_RAT : 201- 207: vsaqg Edk-PVlL keipe IL1B_BOVIN : 241- 247: stsqi Eer-PVfL ghfra IL1B_CERTO : 99- 105: ipfif Eee-PVfL dtcnn IL1B_CERTO : 244- 250: stsqa Enm-PVfL ggtrg IL1B_FELCA : 243- 249: stsqa Eem-PVfL gntkg IL1B_HUMAN : 244- 250: stsqa Enm-PVfL ggtkg IL1B_MOUSE : 245- 251: stsqa Ehk-PVfL gnnsg IL1B_PIG : 242- 248: stsqa Eqk-PVfL gnskg IL1B_RABIT : 243- 249: stsqt Eym-PVfL gnnsg IL1B_SHEEP : 241- 247: stsqi Eek-PVfL grfrg IL1X_HUMAN : 151- 158: lctam EadqPVsL tnmpd IL1X_MOUSE : 152- 159: lcttl EadrPVsL tntpe IL1X_RABIT : 151- 158: lctal EadqPVsL tntpd IL1X_RAT : 152- 159: lcttl EadhPVsL tntpk D 4: 15.5771 19( 19) E-x(0,1)-D-x-P-x(2)-[LM] Occurences: 19(19) IL1A_BOVIN : 198- 204: vsaqn E-DePvlL kempe IL1A_CERTO : 198- 204: vsaqd E-DqPvlL kempe IL1A_HUMAN : 198- 204: vtaqd E-DqPvlL kempe IL1A_MOUSE : 201- 207: vsaqg E-DqPvlL kelpe IL1A_PIG : 198- 204: vsaqn E-DePvlL kelpe IL1A_RABIT : 198- 204: vsaqn E-DePvlL kempe IL1A_RAT : 201- 207: vsaqg E-DkPvlL keipe IL1B_BOVIN : 24- 31: nellf EaDdPkqM ksciq IL1B_CERTO : 25- 32: ddlff EvDgPkqM kcsfq IL1B_FELCA : 24- 31: ndlff EaDgPekM kgslq IL1B_HUMAN : 25- 32: ddlff EaDgPkqM kcsfq IL1B_MOUSE : 24- 31: ndlff EvDgPqkM kgcfq IL1B_PIG : 25- 32: ndllf EaDgPkeM kcctq IL1B_RABIT : 25- 32: ndlff EaDgPnyM kscfq IL1B_SHEEP : 24- 31: nellf EvDgPkqM ksctq IL1X_HUMAN : 151- 158: lctam EaDqPvsL tnmpd IL1X_MOUSE : 152- 159: lcttl EaDrPvsL tntpe IL1X_RABIT : 151- 158: lctal EaDqPvsL tntpd IL1X_RAT : 152- 159: lcttl EaDhPvsL tntpk E 5: 15.1820 19( 19) P-[TV]-x(3)-E-x(3,4)-P Occurences: 19(19) IL1A_BOVIN : 201- 211: qnede PVllkEmpetP kiikd IL1A_CERTO : 201- 211: qdedq PVllkEmpeiP ktttg IL1A_HUMAN : 201- 211: qdedq PVllkEmpeiP ktitg IL1A_MOUSE : 204- 214: qgedq PVllkElpetP klitg IL1A_PIG : 201- 211: qnede PVllkElpetP ktikd IL1A_RABIT : 201- 211: qnede PVllkEmpetP riitd IL1A_RAT : 204- 214: qgedk PVllkEipetP klitg IL1B_BOVIN : 191- 200: kkgdt PTlqlEevd-P kvypk IL1B_CERTO : 194- 203: lkddk PTlqlEsvd-P knypk IL1B_FELCA : 193- 202: mkdgk PTlqlEmld-P kvypk IL1B_HUMAN : 194- 203: lkddk PTlqlEsvd-P knypk IL1B_MOUSE : 195- 204: mkdgt PTlqlEsvd-P kqypk IL1B_PIG : 192- 201: mkdnt PTlqlEdid-P krypk IL1B_RABIT : 193- 202: mkddk PTlqlEsvd-P nrypk IL1B_SHEEP : 191- 200: kkgdt PTlqlEevd-P kvypk IL1X_HUMAN : 132- 142: rsdsg PTtsfEsaacP gwflc IL1X_MOUSE : 133- 143: rsekg PTtsfEsaacP gwflc IL1X_RABIT : 132- 142: rsnsg PTttfEsascP gwflc IL1X_RAT : 133- 143: rsetg PTtsfEslacP gwflc F 6: 14.7419 22( 19) G-x(3,4)-K-x(2,3)-L-[QS] Occurences: 22(19) IL1A_BOVIN : 78- 87: mvaas GkilkKrr-LS lnqfi IL1A_BOVIN : 78- 87: mvaas Gkil-KkrrLS lnqfi IL1A_CERTO : 78- 87: vvstn GkvlkKrr-LS lsqsi IL1A_CERTO : 78- 87: vvstn Gkvl-KkrrLS lsqsi IL1A_HUMAN : 78- 87: vvatn GkvlkKrr-LS lsqsi IL1A_HUMAN : 78- 87: vvatn Gkvl-KkrrLS lsqsi IL1A_MOUSE : 81- 90: atssn GkilkKrr-LS fsetf IL1A_MOUSE : 81- 90: atssn Gkil-KkrrLS fsetf IL1A_PIG : 45- 55: yeplp GdgmdKfmpLS tskts IL1A_PIG : 78- 87: maaan GkilkKrr-LS lnqfi IL1A_PIG : 78- 87: maaan Gkil-KkrrLS lnqfi IL1A_RABIT : 78- 87: avtas GkilkKrr-LS lnqpi IL1A_RABIT : 78- 87: avtas Gkil-KkrrLS lnqpi IL1A_RAT : 81- 90: atsnk GkilkKrr-LS fnqpf IL1A_RAT : 81- 90: atsnk Gkil-KkrrLS fnqpf IL1B_BOVIN : 174- 183: ipval Gikd-KnlyLS cvkkg IL1B_CERTO : 138- 148: slvms GpyelKalhLQ gqdve IL1B_CERTO : 177- 186: vpval Glka-KnlyLS cvlkd IL1B_FELCA : 27- 36: ffead GpekmKgs-LQ nlshs IL1B_HUMAN : 138- 148: slvms GpyelKalhLQ gqdme IL1B_HUMAN : 177- 186: ipval Glke-KnlyLS cvlkd IL1B_MOUSE : 178- 187: ipval Glkg-KnlyLS cvmkd IL1B_PIG : 175- 184: ipvtl Gikg-KnlyLS cvmkd IL1B_RABIT : 176- 185: ipval Glrg-KnlyLS cvmkd IL1B_SHEEP : 174- 183: ipval Gird-KnlyLS cvkkg IL1X_HUMAN : 84- 93: halfl GihggKmc-LS cvksg IL1X_MOUSE : 85- 94: hsvfl GihggKlc-LS caksg IL1X_RABIT : 84- 93: qllfl GiqrgKlc-LS cvksg IL1X_RAT : 85- 94: rnvfl GihggKlc-LS cvksg G 7: 14.6813 22( 19) D-x(1,2)-P-x(2,3)-L-x(3)-[DP] Occurences: 22(19) IL1A_BOVIN : 199- 208: saqne De-Pvl-LkemP etpki IL1A_CERTO : 199- 208: saqde Dq-Pvl-LkemP eipkt IL1A_HUMAN : 199- 208: taqde Dq-Pvl-LkemP eipkt IL1A_MOUSE : 202- 211: saqge Dq-Pvl-LkelP etpkl IL1A_PIG : 199- 208: saqne De-Pvl-LkelP etpkt IL1A_RABIT : 199- 208: saqne De-Pvl-LkemP etpri IL1A_RAT : 202- 211: saqge Dk-Pvl-LkeiP etpkl IL1B_BOVIN : 189- 199: cvkkg Dt-PtlqLeevD pkvyp IL1B_CERTO : 191- 202: scvlk DdkPtlqLesvD pknyp IL1B_CERTO : 192- 202: cvlkd Dk-PtlqLesvD pknyp IL1B_FELCA : 190- 201: scvmk DgkPtlqLemlD pkvyp IL1B_HUMAN : 191- 202: scvlk DdkPtlqLesvD pknyp IL1B_HUMAN : 192- 202: cvlkd Dk-PtlqLesvD pknyp IL1B_MOUSE : 192- 203: scvmk DgtPtlqLesvD pkqyp IL1B_PIG : 189- 200: scvmk DntPtlqLediD pkryp IL1B_RABIT : 190- 201: scvmk DdkPtlqLesvD pnryp IL1B_RABIT : 191- 201: cvmkd Dk-PtlqLesvD pnryp IL1B_SHEEP : 189- 199: cvkkg Dt-PtlqLeevD pkvyp IL1X_HUMAN : 153- 162: tamea Dq-Pvs-LtnmP degvm IL1X_MOUSE : 154- 163: ttlea Dr-Pvs-LtntP eepli IL1X_RABIT : 153- 162: talea Dq-Pvs-LtntP ddsiv IL1X_RAT : 154- 163: ttlea Dh-Pvs-LtntP kepct H 8: 13.9305 19( 19) L-x(0,1)-A-x(2)-L-x-[GNQST] Occurences: 19(19) IL1A_BOVIN : 153- 160: msgpy LtAttLnN leeav IL1A_CERTO : 254- 260: dnwvc L-AkgLpS itdfq IL1A_HUMAN : 152- 159: andqy LtAaaLhN ldeav IL1A_MOUSE : 257- 263: qsrvh L-ArgLpS mtdfq IL1A_PIG : 153- 160: psgqy LmAavLnN ldeav IL1A_RABIT : 153- 160: tsdqy LrAapLqN lgdav IL1A_RAT : 257- 263: qsqvh L-ArgLpS midfq IL1B_BOVIN : 139- 146: aspcv LkAlhLlS qemnr IL1B_CERTO : 142- 149: sgpye LkAlhLqG qdveq IL1B_FELCA : 141- 148: sgsye LrAlhLnG qnmnq IL1B_HUMAN : 142- 149: sgpye LkAlhLqG qdmeq IL1B_MOUSE : 143- 150: sdpye LkAlhLnG qninq IL1B_PIG : 140- 147: agphm LkAlhLlT gdlkr IL1B_RABIT : 146- 153: lkalh LnAenLnQ qvvfs IL1B_SHEEP : 139- 146: dspcv LkAlhLpS qemsr IL1X_HUMAN : 55- 62: lrnnq LvAgyLqG pnvnl IL1X_MOUSE : 56- 63: lrnnq LiAgyLqG pnikl IL1X_RABIT : 55- 62: lrnnq LvAgyLqG pnakl IL1X_RAT : 56- 63: lrnnq LiAgyLqG pntkl I 9: 13.8998 30( 19) K-x(2,3)-L-S-x-[ANSTV] Occurences: 30(19) IL1A_BOVIN : 82- 89: sgkil KkrrLSlN qfitd IL1A_BOVIN : 83- 89: gkilk Krr-LSlN qfitd IL1A_CERTO : 82- 89: ngkvl KkrrLSlS qsiad IL1A_CERTO : 83- 89: gkvlk Krr-LSlS qsiad IL1A_HUMAN : 82- 89: ngkvl KkrrLSlS qsitd IL1A_HUMAN : 83- 89: gkvlk Krr-LSlS qsitd IL1A_MOUSE : 85- 92: ngkil KkrrLSfS etfte IL1A_MOUSE : 86- 92: gkilk Krr-LSfS etfte IL1A_MOUSE : 152- 158: yqdvd Khy-LStT wlndl IL1A_PIG : 50- 57: gdgmd KfmpLStS ktskt IL1A_PIG : 82- 89: ngkil KkrrLSlN qfitd IL1A_PIG : 83- 89: gkilk Krr-LSlN qfitd IL1A_RABIT : 50- 57: edcmn KvvsLStS etsvs IL1A_RABIT : 82- 89: sgkil KkrrLSlN qpitd IL1A_RABIT : 83- 89: gkilk Krr-LSlN qpitd IL1A_RAT : 85- 92: kgkil KkrrLSfN qpfte IL1A_RAT : 86- 92: gkilk Krr-LSfN qpfte IL1B_BOVIN : 178- 185: lgikd KnlyLScV kkgdt IL1B_CERTO : 181- 188: lglka KnlyLScV lkddk IL1B_FELCA : 131- 138: rdisq KslvLSgS yelra IL1B_HUMAN : 181- 188: lglke KnlyLScV lkddk IL1B_MOUSE : 182- 189: lglkg KnlyLScV mkdgt IL1B_PIG : 179- 186: lgikg KnlyLScV mkdnt IL1B_RABIT : 131- 138: qdaqq KslvLSgT yelka IL1B_RABIT : 180- 187: lglrg KnlyLScV mkddk IL1B_SHEEP : 178- 185: lgird KnlyLScV kkgdt IL1X_HUMAN : 89- 95: gihgg Kmc-LScV ksgde IL1X_MOUSE : 90- 96: gihgg Klc-LScA ksgdd IL1X_RABIT : 89- 95: giqrg Klc-LScV ksgdk IL1X_RAT : 90- 96: gihgg Klc-LScV ksgdd J 10: 13.7077 24( 19) D-x(2,4)-S-L-[NSTV] Occurences: 24(19) IL1A_BOVIN : 26- 31: yssei Dhl--SLN qksfy IL1A_CERTO : 49- 55: hescm Dqsv-SLS iseis IL1A_HUMAN : 26- 31: dsssi Dhl--SLN qksfy IL1A_HUMAN : 49- 55: hegcm Dqsv-SLS isets IL1A_MOUSE : 26- 31: yssai Dhl--SLN qksfy IL1A_PIG : 24- 31: eeyss DidhlSLN qksfy IL1A_PIG : 26- 31: yssdi Dhl--SLN qksfy IL1A_RABIT : 26- 31: yssai Dhl--SLN qksfy IL1A_RABIT : 138- 145: eftln DalnqSLV rdtsd IL1A_RAT : 26- 31: yssai Dhl--SLN qksfy IL1B_BOVIN : 125- 132: kcklq DreqkSLV laspc IL1B_CERTO : 128- 135: hctlr DaqlkSLV msgpy IL1B_FELCA : 127- 134: dytfr DisqkSLV lsgsy IL1B_HUMAN : 116- 123: eayvh DapvrSLN ctlrd IL1B_HUMAN : 128- 135: nctlr DsqqkSLV msgpy IL1B_MOUSE : 129- 136: hyrlr DeqqkSLV lsdpy IL1B_PIG : 126- 133: ecklq DkdhkSLV lagph IL1B_PIG : 128- 133: klqdk Dhk--SLV lagph IL1B_RABIT : 127- 134: hcrlq DaqqkSLV lsgty IL1B_SHEEP : 125- 132: kcklq DreqkSLV ldspc IL1X_HUMAN : 153- 159: tamea Dqpv-SLT nmpde IL1X_MOUSE : 154- 160: ttlea Drpv-SLT ntpee IL1X_RABIT : 153- 159: talea Dqpv-SLT ntpdd IL1X_RAT : 154- 160: ttlea Dhpv-SLT ntpke K 11: 13.4254 22( 19) L-S-x(1,3)-K-[DEGQS] Occurences: 22(19) IL1A_BOVIN : 28- 34: seidh LSlnqKS fydas IL1A_BOVIN : 65- 69: sktsk LSf--KE nvvmv IL1A_CERTO : 65- 69: sktsk LSf--KQ smvvv IL1A_HUMAN : 28- 34: ssidh LSlnqKS fyhvs IL1A_MOUSE : 28- 34: saidh LSlnqKS fydas IL1A_PIG : 28- 34: sdidh LSlnqKS fydas IL1A_RABIT : 28- 34: saidh LSlnqKS fydas IL1A_RAT : 28- 34: saidh LSlnqKS fydas IL1B_BOVIN : 182- 188: dknly LScvkKG dtptl IL1B_CERTO : 185- 191: aknly LScvlKD dkptl IL1B_FELCA : 184- 190: knnly LScvmKD gkptl IL1B_HUMAN : 185- 191: eknly LScvlKD dkptl IL1B_MOUSE : 186- 192: gknly LScvmKD gtptl IL1B_PIG : 183- 189: gknly LScvmKD ntptl IL1B_RABIT : 184- 190: gknly LScvmKD dkptl IL1B_SHEEP : 182- 188: dknly LScvkKG dtptl IL1X_HUMAN : 92- 97: ggkmc LScv-KS gdetr IL1X_HUMAN : 113- 119: vnitd LSenrKQ dkrfa IL1X_MOUSE : 93- 98: ggklc LSca-KS gddik IL1X_MOUSE : 114- 119: vnitd LSkn-KE edkrf IL1X_RABIT : 92- 97: rgklc LScv-KS gdkmk IL1X_RAT : 93- 98: ggklc LScv-KS gddtk L 12: 12.5102 34( 19) P-V-x-L Occurences: 34(19) IL1A_BOVIN : 181- 184: edsql PVtL riskt IL1A_BOVIN : 201- 204: qnede PVlL kempe IL1A_CERTO : 181- 184: ddtkv PViL riskt IL1A_CERTO : 201- 204: qdedq PVlL kempe IL1A_HUMAN : 201- 204: qdedq PVlL kempe IL1A_MOUSE : 184- 187: ddsky PVtL kisds IL1A_MOUSE : 204- 207: qgedq PVlL kelpe IL1A_PIG : 181- 184: ddsql PVtL riset IL1A_PIG : 201- 204: qnede PVlL kelpe IL1A_RABIT : 181- 184: edsil PVtL risqt IL1A_RABIT : 201- 204: qnede PVlL kempe IL1A_RAT : 184- 187: ddsky PVtL kvsnt IL1A_RAT : 204- 207: qgedk PVlL keipe IL1B_BOVIN : 170- 173: rdnki PVaL gikdk IL1B_BOVIN : 244- 247: qieer PVfL ghfra IL1B_CERTO : 102- 105: ifeee PVfL dtcnn IL1B_CERTO : 173- 176: sndkv PVaL glkak IL1B_CERTO : 247- 250: qaenm PVfL ggtrg IL1B_FELCA : 172- 175: nskki PVvL cikkn IL1B_FELCA : 246- 249: qaeem PVfL gntkg IL1B_HUMAN : 173- 176: sndki PVaL glkek IL1B_HUMAN : 247- 250: qaenm PVfL ggtkg IL1B_MOUSE : 174- 177: sndki PVaL glkgk IL1B_MOUSE : 248- 251: qaehk PVfL gnnsg IL1B_PIG : 171- 174: snnki PVtL gikgk IL1B_PIG : 245- 248: qaeqk PVfL gnskg IL1B_RABIT : 172- 175: sndki PVaL glrgk IL1B_RABIT : 246- 249: qteym PVfL gnnsg IL1B_SHEEP : 170- 173: rdnki PVaL girdk IL1B_SHEEP : 244- 247: qieek PVfL grfrg IL1X_HUMAN : 155- 158: meadq PVsL tnmpd IL1X_MOUSE : 156- 159: leadr PVsL tntpe IL1X_RABIT : 155- 158: leadq PVsL tntpd IL1X_RAT : 156- 159: leadh PVsL tntpk M 13: 12.0102 24( 19) K-x(2,3)-K-R Occurences: 24(19) IL1A_BOVIN : 79- 84: vaasg KilkKR rlsln IL1A_CERTO : 79- 84: vstng KvlkKR rlsls IL1A_HUMAN : 79- 84: vatng KvlkKR rlsls IL1A_MOUSE : 82- 87: tssng KilkKR rlsfs IL1A_PIG : 79- 84: aaang KilkKR rlsln IL1A_RABIT : 79- 84: vtasg KilkKR rlsln IL1A_RAT : 82- 87: tsnkg KilkKR rlsfn IL1B_BOVIN : 201- 206: eevdp KvypKR nmekr IL1B_CERTO : 209- 214: knypk KkmeKR fvfnk IL1B_CERTO : 210- 214: nypkk Kme-KR fvfnk IL1B_FELCA : 208- 213: kvypk KkmeKR fvfnk IL1B_FELCA : 209- 213: vypkk Kme-KR fvfnk IL1B_HUMAN : 209- 214: knypk KkmeKR fvfnk IL1B_HUMAN : 210- 214: nypkk Kme-KR fvfnk IL1B_MOUSE : 210- 215: kqypk KkmeKR fvfnk IL1B_MOUSE : 211- 215: qypkk Kme-KR fvfnk IL1B_PIG : 202- 207: edidp KrypKR dmekr IL1B_RABIT : 208- 213: nrypk KkmeKR fvfnk IL1B_RABIT : 209- 213: rypkk Kme-KR fvfnk IL1B_SHEEP : 201- 206: eevdp KvypKR nmekr IL1X_HUMAN : 118- 122: lsenr Kqd-KR fafir IL1X_MOUSE : 118- 123: dlskn KeedKR ftfir IL1X_RABIT : 117- 122: dlgkn KeqdKR ftfir IL1X_RAT : 118- 123: dlnkn KeedKR ftfir N 14: 12.0102 35( 19) P-x(0,1)-V-x-L Occurences: 35(19) IL1A_BOVIN : 181- 184: edsql P-VtL riskt IL1A_BOVIN : 201- 204: qnede P-VlL kempe IL1A_CERTO : 181- 184: ddtkv P-ViL riskt IL1A_CERTO : 201- 204: qdedq P-VlL kempe IL1A_HUMAN : 201- 204: qdedq P-VlL kempe IL1A_MOUSE : 184- 187: ddsky P-VtL kisds IL1A_MOUSE : 204- 207: qgedq P-VlL kelpe IL1A_PIG : 181- 184: ddsql P-VtL riset IL1A_PIG : 201- 204: qnede P-VlL kelpe IL1A_RABIT : 181- 184: edsil P-VtL risqt IL1A_RABIT : 201- 204: qnede P-VlL kempe IL1A_RAT : 184- 187: ddsky P-VtL kvsnt IL1A_RAT : 204- 207: qgedk P-VlL keipe IL1B_BOVIN : 170- 173: rdnki P-VaL gikdk IL1B_BOVIN : 244- 247: qieer P-VfL ghfra IL1B_CERTO : 102- 105: ifeee P-VfL dtcnn IL1B_CERTO : 173- 176: sndkv P-VaL glkak IL1B_CERTO : 247- 250: qaenm P-VfL ggtrg IL1B_FELCA : 172- 175: nskki P-VvL cikkn IL1B_FELCA : 246- 249: qaeem P-VfL gntkg IL1B_HUMAN : 173- 176: sndki P-VaL glkek IL1B_HUMAN : 247- 250: qaenm P-VfL ggtkg IL1B_MOUSE : 174- 177: sndki P-VaL glkgk IL1B_MOUSE : 248- 251: qaehk P-VfL gnnsg IL1B_PIG : 171- 174: snnki P-VtL gikgk IL1B_PIG : 245- 248: qaeqk P-VfL gnskg IL1B_RABIT : 172- 175: sndki P-VaL glrgk IL1B_RABIT : 246- 249: qteym P-VfL gnnsg IL1B_SHEEP : 170- 173: rdnki P-VaL girdk IL1B_SHEEP : 244- 247: qieek P-VfL grfrg IL1X_HUMAN : 63- 67: gylqg PnVnL eekid IL1X_HUMAN : 155- 158: meadq P-VsL tnmpd IL1X_MOUSE : 156- 159: leadr P-VsL tntpe IL1X_RABIT : 155- 158: leadq P-VsL tntpd IL1X_RAT : 156- 159: leadh P-VsL tntpk O 15: 11.5102 27( 19) F-x(0,1)-E-x(0,1)-D Occurences: 27(19) IL1A_BOVIN : 8- 10: kvpdl F-E-D lkncy IL1A_CERTO : 8- 10: kvpdm F-E-D lkncy IL1A_HUMAN : 8- 10: kvpdm F-E-D lkncy IL1A_MOUSE : 8- 10: kvpdl F-E-D lkncy IL1A_MOUSE : 95- 98: sfset FtE-D dlqsi IL1A_MOUSE : 95- 99: sfset FtEdD lqsit IL1A_PIG : 8- 10: kvpdl F-E-D lkncy IL1A_RABIT : 8- 10: kvpdl F-E-D lkncf IL1A_RAT : 8- 10: kvpdl F-E-D lkncy IL1A_RAT : 95- 98: sfnqp FtE-D dleai IL1A_RAT : 95- 99: sfnqp FtEdD leaia IL1B_BOVIN : 23- 26: enell F-EaD dpkqm IL1B_CERTO : 23- 27: neddl FfEvD gpkqm IL1B_CERTO : 24- 27: eddlf F-EvD gpkqm IL1B_FELCA : 22- 26: dendl FfEaD gpekm IL1B_FELCA : 23- 26: endlf F-EaD gpekm IL1B_HUMAN : 23- 27: neddl FfEaD gpkqm IL1B_HUMAN : 24- 27: eddlf F-EaD gpkqm IL1B_HUMAN : 85- 89: pcpqt FqEnD lstff IL1B_MOUSE : 22- 26: dendl FfEvD gpqkm IL1B_MOUSE : 23- 26: endlf F-EvD gpqkm IL1B_PIG : 24- 27: nndll F-EaD gpkem IL1B_RABIT : 23- 27: nendl FfEaD gpnym IL1B_RABIT : 24- 27: endlf F-EaD gpnym IL1B_SHEEP : 23- 26: enell F-EvD gpkqm IL1X_HUMAN : 173- 176: vtkfy FqE-D e IL1X_MOUSE : 174- 177: vtkfy FqE-D q IL1X_RABIT : 173- 176: vtkfy FqE-D q IL1X_RAT : 174- 177: vtkfy FqE-D q P 16: 11.5102 22( 19) L-x(2,3)-V-x(2,3)-D Occurences: 22(19) IL1A_BOVIN : 161- 168: ttlnn LeeaVkf-D mvayv IL1A_CERTO : 160- 167: aaihn LdeaVkf-D mgayt IL1A_HUMAN : 160- 167: aalhn LdeaVkf-D mgayk IL1A_MOUSE : 163- 170: twlnd LqqeVkf-D myays IL1A_PIG : 161- 168: avlnn LdeaVkf-D maayt IL1A_RABIT : 161- 168: aplqn LgdaVkf-D mgvym IL1A_RAT : 163- 170: aslnd LqleVkf-D myays IL1B_BOVIN : 182- 189: dknly Lsc-VkkgD tptlq IL1B_CERTO : 185- 191: aknly Lsc-Vlk-D dkptl IL1B_CERTO : 185- 192: aknly Lsc-VlkdD kptlq IL1B_FELCA : 184- 190: knnly Lsc-Vmk-D gkptl IL1B_HUMAN : 185- 191: eknly Lsc-Vlk-D dkptl IL1B_HUMAN : 185- 192: eknly Lsc-VlkdD kptlq IL1B_MOUSE : 186- 192: gknly Lsc-Vmk-D gtptl IL1B_PIG : 183- 189: gknly Lsc-Vmk-D ntptl IL1B_RABIT : 184- 190: gknly Lsc-Vmk-D dkptl IL1B_RABIT : 184- 191: gknly Lsc-VmkdD kptlq IL1B_SHEEP : 182- 189: dknly Lsc-VkkgD tptlq IL1X_HUMAN : 92- 99: ggkmc Lsc-VksgD etrlq IL1X_HUMAN : 105- 112: etrlq Lea-VnitD lsenr IL1X_MOUSE : 106- 113: diklq Lee-VnitD lsknk IL1X_RABIT : 92- 99: rgklc Lsc-VksgD kmklh IL1X_RABIT : 105- 112: kmklh Lea-VnitD lgknk IL1X_RAT : 93- 100: ggklc Lsc-VksgD dtklq IL1X_RAT : 106- 113: dtklq Lee-VnitD lnknk Q 17: 11.5102 24( 19) L-x(0,1)-L-x(0,1)-E Occurences: 24(19) IL1A_BOVIN : 203- 206: edepv L-LkE mpetp IL1A_CERTO : 203- 206: edqpv L-LkE mpeip IL1A_HUMAN : 203- 206: edqpv L-LkE mpeip IL1A_MOUSE : 206- 209: edqpv L-LkE lpetp IL1A_PIG : 203- 206: edepv L-LkE lpetp IL1A_RABIT : 203- 206: edepv L-LkE mpetp IL1A_RAT : 163- 166: aslnd LqL-E vkfdm IL1A_RAT : 206- 209: edkpv L-LkE ipetp IL1B_BOVIN : 21- 24: sdene L-LfE addpk IL1B_BOVIN : 193- 196: gdtpt LqL-E evdpk IL1B_BOVIN : 193- 197: gdtpt LqLeE vdpkv IL1B_CERTO : 196- 199: ddkpt LqL-E svdpk IL1B_FELCA : 195- 198: dgkpt LqL-E mldpk IL1B_HUMAN : 176- 180: kipva LgLkE knlyl IL1B_HUMAN : 196- 199: ddkpt LqL-E svdpk IL1B_MOUSE : 197- 200: dgtpt LqL-E svdpk IL1B_PIG : 22- 25: dnnnd L-LfE adgpk IL1B_PIG : 194- 197: dntpt LqL-E didpk IL1B_RABIT : 195- 198: ddkpt LqL-E svdpn IL1B_SHEEP : 21- 24: sdene L-LfE vdgpk IL1B_SHEEP : 193- 196: gdtpt LqL-E evdpk IL1B_SHEEP : 193- 197: gdtpt LqLeE vdpkv IL1X_HUMAN : 103- 106: gdetr LqL-E avnit IL1X_MOUSE : 104- 107: gddik LqL-E evnit IL1X_MOUSE : 104- 108: gddik LqLeE vnitd IL1X_RABIT : 103- 106: gdkmk LhL-E avnit IL1X_RAT : 104- 107: gddtk LqL-E evnit IL1X_RAT : 104- 108: gddtk LqLeE vnitd R 18: 11.5102 21( 19) L-x(3,4)-V-x(2,3)-D Occurences: 21(19) IL1A_BOVIN : 161- 168: ttlnn Leea-Vkf-D mvayv IL1A_CERTO : 160- 167: aaihn Ldea-Vkf-D mgayt IL1A_HUMAN : 160- 167: aalhn Ldea-Vkf-D mgayk IL1A_MOUSE : 163- 170: twlnd Lqqe-Vkf-D myays IL1A_PIG : 161- 168: avlnn Ldea-Vkf-D maayt IL1A_RABIT : 161- 168: aplqn Lgda-Vkf-D mgvym IL1A_RAT : 163- 170: aslnd Lqle-Vkf-D myays IL1B_BOVIN : 180- 189: ikdkn LylscVkkgD tptlq IL1B_CERTO : 183- 191: lkakn LylscVlk-D dkptl IL1B_CERTO : 183- 192: lkakn LylscVlkdD kptlq IL1B_FELCA : 182- 190: ikknn LylscVmk-D gkptl IL1B_HUMAN : 183- 191: lkekn LylscVlk-D dkptl IL1B_HUMAN : 183- 192: lkekn LylscVlkdD kptlq IL1B_MOUSE : 184- 192: lkgkn LylscVmk-D gtptl IL1B_PIG : 181- 189: ikgkn LylscVmk-D ntptl IL1B_RABIT : 182- 190: lrgkn LylscVmk-D dkptl IL1B_RABIT : 182- 191: lrgkn LylscVmkdD kptlq IL1B_SHEEP : 180- 189: irdkn LylscVkkgD tptlq IL1X_HUMAN : 103- 112: gdetr LqleaVnitD lsenr IL1X_MOUSE : 104- 113: gddik LqleeVnitD lsknk IL1X_RABIT : 90- 99: iqrgk LclscVksgD kmklh IL1X_RABIT : 103- 112: gdkmk LhleaVnitD lgknk IL1X_RAT : 91- 100: ihggk LclscVksgD dtklq IL1X_RAT : 104- 113: gddtk LqleeVnitD lnknk S 19: 11.5102 23( 19) L-x(3,5)-K-S Occurences: 23(19) IL1A_BOVIN : 28- 34: seidh Lslnq-KS fydas IL1A_CERTO : 28- 34: ssidh Lflnq-KS fydvs IL1A_HUMAN : 28- 34: ssidh Lslnq-KS fyhvs IL1A_MOUSE : 28- 34: saidh Lslnq-KS fydas IL1A_MOUSE : 224- 230: gsetd Liffw-KS inskn IL1A_PIG : 28- 34: sdidh Lslnq-KS fydas IL1A_RABIT : 28- 34: saidh Lslnq-KS fydas IL1A_RAT : 28- 34: saidh Lslnq-KS fydas IL1B_BOVIN : 123- 130: sikck LqdreqKS lvlas IL1B_CERTO : 126- 133: slhct LrdaqlKS lvmsg IL1B_FELCA : 85- 92: acsqp LqdedlKS lfcci IL1B_HUMAN : 126- 133: slnct LrdsqqKS lvmsg IL1B_MOUSE : 127- 134: qlhyr LrdeqqKS lvlsd IL1B_PIG : 124- 131: smeck LqdkdhKS lvlag IL1B_RABIT : 125- 132: slhcr LqdaqqKS lvlsg IL1B_SHEEP : 123- 130: svkck LqdreqKS lvlds IL1X_HUMAN : 92- 97: ggkmc Lscv--KS gdetr IL1X_MOUSE : 91- 98: ihggk LclscaKS gddik IL1X_MOUSE : 93- 98: ggklc Lsca--KS gddik IL1X_RABIT : 90- 97: iqrgk LclscvKS gdkmk IL1X_RABIT : 92- 97: rgklc Lscv--KS gdkmk IL1X_RAT : 91- 98: ihggk LclscvKS gddtk IL1X_RAT : 93- 98: ggklc Lscv--KS gddtk T 20: 11.5102 27( 19) G-x(3,4)-K-x(2,3)-L Occurences: 27(19) IL1A_BOVIN : 78- 86: mvaas GkilkKrr-L slnqf IL1A_BOVIN : 78- 86: mvaas Gkil-KkrrL slnqf IL1A_CERTO : 78- 86: vvstn GkvlkKrr-L slsqs IL1A_CERTO : 78- 86: vvstn Gkvl-KkrrL slsqs IL1A_HUMAN : 78- 86: vvatn GkvlkKrr-L slsqs IL1A_HUMAN : 78- 86: vvatn Gkvl-KkrrL slsqs IL1A_MOUSE : 81- 89: atssn GkilkKrr-L sfset IL1A_MOUSE : 81- 89: atssn Gkil-KkrrL sfset IL1A_PIG : 45- 54: yeplp GdgmdKfmpL stskt IL1A_PIG : 78- 86: maaan GkilkKrr-L slnqf IL1A_PIG : 78- 86: maaan Gkil-KkrrL slnqf IL1A_RABIT : 78- 86: avtas GkilkKrr-L slnqp IL1A_RABIT : 78- 86: avtas Gkil-KkrrL slnqp IL1A_RAT : 81- 89: atsnk GkilkKrr-L sfnqp IL1A_RAT : 81- 89: atsnk Gkil-KkrrL sfnqp IL1B_BOVIN : 174- 182: ipval Gikd-KnlyL scvkk IL1B_CERTO : 138- 147: slvms GpyelKalhL qgqdv IL1B_CERTO : 177- 185: vpval Glka-KnlyL scvlk IL1B_FELCA : 27- 35: ffead GpekmKgs-L qnlsh IL1B_HUMAN : 138- 147: slvms GpyelKalhL qgqdm IL1B_HUMAN : 177- 185: ipval Glke-KnlyL scvlk IL1B_MOUSE : 178- 186: ipval Glkg-KnlyL scvmk IL1B_PIG : 136- 145: slvla GphmlKalhL ltgdl IL1B_PIG : 175- 183: ipvtl Gikg-KnlyL scvmk IL1B_RABIT : 137- 146: slvls GtyelKalhL naenl IL1B_RABIT : 176- 184: ipval Glrg-KnlyL scvmk IL1B_SHEEP : 174- 182: ipval Gird-KnlyL scvkk IL1X_HUMAN : 84- 92: halfl GihggKmc-L scvks IL1X_MOUSE : 85- 93: hsvfl GihggKlc-L scaks IL1X_MOUSE : 99- 106: scaks Gddi-Klq-L eevni IL1X_RABIT : 84- 92: qllfl GiqrgKlc-L scvks IL1X_RABIT : 98- 105: scvks Gdkm-Klh-L eavni IL1X_RAT : 85- 93: rnvfl GihggKlc-L scvks IL1X_RAT : 99- 106: scvks Gddt-Klq-L eevni Number of patterns evaluated by Pratt:1117 Total running time: 2 seconds