------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 17 sequences from file IMP_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 17 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename IMP_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CYSQ_ECOLI 246 CYSQ_HAEIN 228 CYSQ_MYCLE 289 CYSQ_SALTY 98 HAL2_CANAL 105 HAL2_YEAST 357 INPP_BOVIN 400 MYOP_BOVIN 277 MYOP_HUMAN 277 MYOP_XENLA 285 QAX_NEUCR 340 QUTG_EMENI 330 SUHB_ECOLI 267 SUHB_HAEIN 267 SUHB_MYCLE 291 YHK6_YEAST 295 YPSS_RHILP 95 Pratt run started at Thu Feb 6 20:05:09 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 11.0102 28( 17) A-x(0,1)-G-x(0,2)-D 2: 10.5102 45( 17) G-x(3,5)-V-x(1,3)-G 3: 10.5102 39( 17) L-x(0,2)-A-x(1,3)-G 4: 8.3401 38( 17) D-x-A 5: 8.3401 42( 17) L-x(5)-G 6: 8.3401 36( 17) D-x-T 7: 8.3401 63( 17) A-G 8: 8.3401 38( 17) D-x(3)-G 9: 7.8401 80( 17) V-x(2,3)-A 10: 7.8401 44( 17) R-x(1,2)-L 11: 7.8401 38( 17) R-x(0,1)-L 12: 7.8401 63( 17) G-x(3,4)-L 13: 7.8401 75( 17) G-x(4,5)-V 14: 7.8401 54( 17) I-x(3,4)-G 15: 7.8401 45( 17) D-x(3,4)-A 16: 7.8401 59( 17) A-x(0,1)-D 17: 7.8401 50( 17) A-x(3,4)-D 18: 7.8401 58( 17) T-x(0,1)-A 19: 7.8401 58( 17) T-x(1,2)-A 20: 7.8401 50( 17) G-x(0,1)-T Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 13.1091 25( 17) L-x(0,2)-A-x(1,3)-G-x-[AGV] B 2: 12.8652 25( 17) A-x(0,1)-G-x(0,2)-D-x(3)-[DENQR] C 3: 12.6008 28( 17) D-x(2)-[ADGT]-G-x(3)-[FILMV] D 4: 11.0086 26( 17) D-[GIV]-T E 5: 10.5102 45( 17) G-x(3,5)-V-x(1,3)-G F 6: 9.7607 26( 17) D-x-A-x(2)-[ADEGNST] G 7: 9.6952 24( 17) A-x(3,4)-D-x(3)-[DENQR] H 8: 9.4590 34( 17) T-x(1,2)-A-x(2)-[ADGSTV] I 9: 9.0818 39( 17) G-x(3,4)-L-[ACDGNSTV] J 10: 9.0786 33( 17) G-x(0,1)-T-x-[ADEGNQST] K 11: 8.3401 42( 17) L-x(5)-G L 12: 8.3401 63( 17) A-G M 13: 7.8401 80( 17) V-x(2,3)-A N 14: 7.8401 44( 17) R-x(1,2)-L O 15: 7.8401 38( 17) R-x(0,1)-L P 16: 7.8401 75( 17) G-x(4,5)-V Q 17: 7.8401 54( 17) I-x(3,4)-G R 18: 7.8401 45( 17) D-x(3,4)-A S 19: 7.8401 59( 17) A-x(0,1)-D T 20: 7.8401 58( 17) T-x(0,1)-A Best patterns with alignements: fitness hits(seqs) Pattern A 1: 13.1091 25( 17) L-x(0,2)-A-x(1,3)-G-x-[AGV] Occurences: 25(17) CYSQ_ECOLI : 8- 15: dqvcq L--ArnaGdA imqvy CYSQ_ECOLI : 186- 192: slkfc Lv-Ae--GqA hvypr CYSQ_HAEIN : 156- 162: slksg Lv-Ae--GaV dcyvr CYSQ_MYCLE : 79- 87: lllsr Lr-AerpGdA vlsee CYSQ_SALTY : 8- 15: eqvcq L--ArnaGdA imqvy HAL2_CANAL : 20- 25: vkycv L--As--GqA diylr HAL2_YEAST : 270- 276: qakyc Ll-Al--GlA dvylr HAL2_YEAST : 271- 276: akycl L--Al--GlA dvylr INPP_BOVIN : 325- 331: aahai Lr-Am--GgG mvdlk INPP_BOVIN : 325- 333: aahai Lr-AmggGmV dlkec MYOP_BOVIN : 15- 22: dyavt L--AgqaGeV vreal MYOP_BOVIN : 202- 208: alnmc Lv-Aa--GaA dayye MYOP_HUMAN : 15- 22: dyavt L--ArqaGeV vceai MYOP_HUMAN : 202- 208: avnmc Lv-At--GgA dayye MYOP_XENLA : 206- 212: avnmc Lv-At--GgA dayye QAX_NEUCR : 155- 163: pmlgq LftAck-GrG awlne QUTG_EMENI : 259- 266: agiai LleAg--GlV taanp QUTG_EMENI : 260- 266: giail Le-Ag--GlV taanp SUHB_ECOLI : 124- 132: pmrne LftAtr-GqG aqlng SUHB_HAEIN : 124- 132: pirne LftAvr-GeG aklne SUHB_MYCLE : 38- 44: vfgtd Lg-Aa--GgG avrak SUHB_MYCLE : 38- 45: vfgtd LgaAg--GgA vraks SUHB_MYCLE : 38- 45: vfgtd Lg-Aag-GgA vraks SUHB_MYCLE : 38- 46: vfgtd LgaAgg-GaV rakst SUHB_MYCLE : 38- 46: vfgtd Lg-AaggGaV rakst SUHB_MYCLE : 172- 180: savdd LsmAll-GtG faysv SUHB_MYCLE : 264- 273: vggag LvvAaapGiA dalla YHK6_YEAST : 132- 140: phinl LvsAsk-GnG mrvnn YPSS_RHILP : 22- 28: slkfc Ll-Ae--GkA dvypr YPSS_RHILP : 23- 28: lkfcl L--Ae--GkA dvypr B 2: 12.8652 25( 17) A-x(0,1)-G-x(0,2)-D-x(3)-[DENQR] Occurences: 25(17) CYSQ_ECOLI : 12- 18: qlarn A-G--DaimQ vydgt CYSQ_HAEIN : 158- 167: ksglv AeGavDcyvR lgqtg CYSQ_MYCLE : 62- 69: fdqpr AlG--DagdR lansl CYSQ_MYCLE : 66- 72: ralgd A-G--DrlaN sllls CYSQ_SALTY : 12- 18: qlarn A-G--DaimQ vydga HAL2_CANAL : 21- 30: kycvl AsGqaDiylR lpvsd HAL2_YEAST : 272- 281: kycll AlGlaDvylR lpikl INPP_BOVIN : 361- 369: vgneg AaGv-DqwaN kggli INPP_BOVIN : 362- 369: gnega A-Gv-DqwaN kggli MYOP_BOVIN : 204- 213: nmclv AaGaaDayyE mgihc MYOP_BOVIN : 205- 213: mclva A-GaaDayyE mgihc MYOP_HUMAN : 204- 213: nmclv AtGgaDayyE mgihc MYOP_XENLA : 208- 217: nmclv AtGgaDayyE mglhc QAX_NEUCR : 246- 255: dlayt AmGsfDiwwE ggcwe QUTG_EMENI : 235- 244: dlayt AmGsvDiwwE ggcwe SUHB_ECOLI : 196- 205: dlayv AaGrvDgffE iglrp SUHB_ECOLI : 197- 205: layva A-GrvDgffE iglrp SUHB_HAEIN : 214- 221: kawdc AaG--DlivR eaggl SUHB_HAEIN : 215- 221: awdca A-G--DlivR eaggl SUHB_MYCLE : 219- 228: dlcmv AaGqlDayyE hevqv SUHB_MYCLE : 220- 228: lcmva A-GqlDayyE hevqv YHK6_YEAST : 215- 224: tmayi AmGylDsywD ggcys YPSS_RHILP : 24- 33: kfcll AeGkaDvypR ftrtm YPSS_RHILP : 43- 50: mewdt AaG--DavlR aaggs YPSS_RHILP : 44- 50: ewdta A-G--DavlR aaggs C 3: 12.6008 28( 17) D-x(2)-[ADGT]-G-x(3)-[FILMV] Occurences: 28(17) CYSQ_ECOLI : 83- 91: rywlv DplDGtkeF ikrng CYSQ_HAEIN : 48- 56: eywli DplDGtqqF inrtd CYSQ_MYCLE : 109- 117: rvwii DplDGtreF stagr CYSQ_SALTY : 83- 91: rywlv DplDGtkeF ikrng HAL2_CANAL : 43- 51: rekiw DhaAGnilI yesgg HAL2_YEAST : 142- 150: rfwcl DpiDGtkgF lrgeq HAL2_YEAST : 294- 302: qekiw DhaAGnviV heagg INPP_BOVIN : 190- 198: ligvy DiqTGvplM gvinq MYOP_BOVIN : 90- 98: ptwii DpiDGttnF vhgfp MYOP_BOVIN : 237- 245: ggvll DvtGGpfdL msrrv MYOP_HUMAN : 90- 98: ptwii DpiDGttnF vhrfp MYOP_HUMAN : 237- 245: ggvlm DvtGGpfdL msrrv MYOP_XENLA : 93- 101: ptwii DpiDGttnF vhrfp MYOP_XENLA : 241- 249: ggtil DatGGlfdL mscri QAX_NEUCR : 262- 270: gcwew DvaAGiaiL qeagg QUTG_EMENI : 100- 108: ptwcv DplDGtvnF thafp QUTG_EMENI : 251- 259: gcwew DvaAGiaiL leagg SUHB_ECOLI : 84- 92: vqwvi DplDGttnF ikrlp SUHB_ECOLI : 212- 220: glrpw DfaAGellV reagg SUHB_ECOLI : 229- 237: ggivs DftGGhnyM ltgni SUHB_HAEIN : 84- 92: vqwii DplDGtrnF mtglp SUHB_HAEIN : 212- 220: glkaw DcaAGdliV reagg SUHB_HAEIN : 229- 237: gglvc DfdAGnsyL rsgni SUHB_MYCLE : 104- 112: vtwvl DpiDGtvnF vygip YHK6_YEAST : 35- 43: tqkdy DlkTGsrsV divta YHK6_YEAST : 92- 100: ptfii DpiDGttnF vhdfp YHK6_YEAST : 231- 239: gcysw DvcAGwciL kevgg YPSS_RHILP : 41- 49: rtmew DtaAGdavL raagg D 4: 11.0086 26( 17) D-[GIV]-T Occurences: 26(17) CYSQ_ECOLI : 21- 23: imqvy DGT kpmdv CYSQ_ECOLI : 86- 88: lvdpl DGT kefik CYSQ_HAEIN : 51- 53: lidpl DGT qqfin CYSQ_MYCLE : 112- 114: iidpl DGT refst CYSQ_SALTY : 86- 88: lvdpl DGT kefik HAL2_CANAL : 60- 62: ggqvg DVT gapln HAL2_YEAST : 145- 147: cldpi DGT kgflr INPP_BOVIN : 167- 169: ikgsa DIT pnqgi MYOP_BOVIN : 93- 95: iidpi DGT tnfvh MYOP_BOVIN : 153- 155: vshqe DIT ksllv MYOP_BOVIN : 237- 239: ggvll DVT ggpfd MYOP_HUMAN : 93- 95: iidpi DGT tnfvh MYOP_HUMAN : 153- 155: vsqqe DIT ksllv MYOP_HUMAN : 237- 239: ggvlm DVT ggpfd MYOP_XENLA : 96- 98: iidpi DGT tnfvh MYOP_XENLA : 156- 158: vsgqk DIT ksmii QAX_NEUCR : 118- 120: vvdpl DGT vnyth QAX_NEUCR : 139- 141: iaflv DGT pvigv QUTG_EMENI : 103- 105: cvdpl DGT vnfth QUTG_EMENI : 191- 193: rrdip DGT lqrki SUHB_ECOLI : 87- 89: vidpl DGT tnfik SUHB_ECOLI : 149- 151: tardl DGT ilatg SUHB_HAEIN : 87- 89: iidpl DGT rnfmt SUHB_MYCLE : 107- 109: vldpi DGT vnfvy YHK6_YEAST : 95- 97: iidpi DGT tnfvh YPSS_RHILP : 60- 62: stvtl DGT pltyg E 5: 10.5102 45( 17) G-x(3,5)-V-x(1,3)-G Occurences: 45(17) CYSQ_ECOLI : 13- 22: larna GdaimqVyd-G tkpmd CYSQ_HAEIN : 160- 169: glvae GavdcyVrl-G qtgew CYSQ_MYCLE : 210- 219: aigsa GakamaVvd-G dvday CYSQ_SALTY : 13- 22: larna GdaimqVyd-G akpme HAL2_CANAL : 55- 63: liyes GgqvgdVt--G aplnf HAL2_CANAL : 56- 63: iyesg Gqvgd-Vt--G aplnf HAL2_YEAST : 77- 85: eesss GlsdafVs--G ilnei HAL2_YEAST : 195- 203: ghesf GyifraVr--G lgafy HAL2_YEAST : 195- 205: ghesf GyifraVrglG afysp HAL2_YEAST : 298- 306: wdhaa Gnvi--VheaG gihtd INPP_BOVIN : 178- 187: gifps GlqcvtVli-G vydiq INPP_BOVIN : 275- 282: ketik Galsh-Vc--G erifr INPP_BOVIN : 292- 301: raaga GykslcVil-G ladiy MYOP_BOVIN : 69- 76: shsfi Gees--Vaa-G eksil MYOP_BOVIN : 94- 101: idpid Gttnf-Vh--G fpfva MYOP_BOVIN : 101- 110: tnfvh GfpfvaVsi-G fvvnk MYOP_BOVIN : 215- 223: ayyem GihcwdVa--G agiiv MYOP_BOVIN : 215- 225: ayyem GihcwdVagaG iivte MYOP_BOVIN : 223- 232: cwdva Gagii-VteaG gvlld MYOP_BOVIN : 232- 240: ivtea GgvlldVt--G gpfdl MYOP_BOVIN : 232- 241: ivtea GgvlldVtg-G pfdlm MYOP_BOVIN : 233- 240: vteag Gvlld-Vt--G gpfdl MYOP_BOVIN : 233- 241: vteag Gvlld-Vtg-G pfdlm MYOP_HUMAN : 69- 76: shsfi Gees--Vaa-G eksil MYOP_HUMAN : 120- 128: kkief GvvyscVe--G kmyta MYOP_HUMAN : 215- 223: ayyem GihcwdVa--G agiiv MYOP_HUMAN : 215- 225: ayyem GihcwdVagaG iivte MYOP_HUMAN : 223- 232: cwdva Gagii-VteaG gvlmd MYOP_HUMAN : 232- 240: ivtea GgvlmdVt--G gpfdl MYOP_HUMAN : 232- 241: ivtea GgvlmdVtg-G pfdlm MYOP_HUMAN : 233- 240: vteag Gvlmd-Vt--G gpfdl MYOP_HUMAN : 233- 241: vteag Gvlmd-Vtg-G pfdlm MYOP_XENLA : 72- 79: shsfi Gees--Vaa-G agstl MYOP_XENLA : 146- 153: gsfcn Gqklq-Vs--G qkdit QAX_NEUCR : 223- 231: evggr GgkggmVh--G vrslg QAX_NEUCR : 224- 231: vggrg Gkggm-Vh--G vrslg QAX_NEUCR : 226- 236: grggk GgmvhgVrslG satld QAX_NEUCR : 227- 236: rggkg Gmvhg-VrslG satld QAX_NEUCR : 257- 266: iwweg GcwewdVaa-G iailq QUTG_EMENI : 212- 220: ergsr GgkggmVh--G vrslg QUTG_EMENI : 213- 220: rgsrg Gkggm-Vh--G vrslg QUTG_EMENI : 215- 225: srggk GgmvhgVrslG satmd QUTG_EMENI : 216- 225: rggkg Gmvhg-VrslG satmd QUTG_EMENI : 246- 255: iwweg GcwewdVaa-G iaill QUTG_EMENI : 277- 285: pedie Gpiep-Vkl-G srlyl SUHB_ECOLI : 216- 224: wdfaa Gell--VreaG givsd SUHB_HAEIN : 216- 224: wdcaa Gdli--VreaG glvcd SUHB_MYCLE : 108- 115: ldpid Gtvnf-Vy--G ipaya SUHB_MYCLE : 134- 142: gvsva GavaevVa--G rvhsa SUHB_MYCLE : 134- 142: gvsva Gavae-Vva-G rvhsa YHK6_YEAST : 72- 79: tfkfi Geesy-Vk--G etvit YHK6_YEAST : 226- 235: sywdg GcyswdVca-G wcilk YPSS_RHILP : 53- 61: vlraa Ggst--VtldG tplty F 6: 9.7607 26( 17) D-x-A-x(2)-[ADEGNST] Occurences: 26(17) CYSQ_ECOLI : 41- 46: pvtaa DiAahT vimdg CYSQ_HAEIN : 175- 180: qtgew DtAgaE vllge CYSQ_MYCLE : 33- 38: qaelt DaAlaA dlata CYSQ_MYCLE : 39- 44: aalaa DlAtaA gelll CYSQ_MYCLE : 234- 239: gqwew DsAapA gvvla CYSQ_SALTY : 41- 46: pvtaa DiAahT vileg HAL2_CANAL : 43- 48: rekiw DhAagN iliye HAL2_YEAST : 49- 54: pvttg DyAaqT iiina HAL2_YEAST : 294- 299: qekiw DhAagN vivhe INPP_BOVIN : 133- 138: dvffs DpAldS veini MYOP_BOVIN : 220- 225: gihcw DvAgaG iivte MYOP_HUMAN : 220- 225: gihcw DvAgaG iivte MYOP_XENLA : 224- 229: glhcw DmAaaS vivte QAX_NEUCR : 241- 246: gsatl DlAytA mgsfd QAX_NEUCR : 285- 290: anppe DwAtaE ipdvk QUTG_EMENI : 19- 24: yafat DlArkA gqlll QUTG_EMENI : 230- 235: gsatm DlAytA mgsvd SUHB_ECOLI : 44- 49: fvtnv DkAaeA viidt SUHB_ECOLI : 191- 196: gsaal DlAyvA agrvd SUHB_ECOLI : 212- 217: glrpw DfAagE llvre SUHB_HAEIN : 44- 49: yvtnv DkAseA eiiev SUHB_HAEIN : 212- 217: glkaw DcAagD livre SUHB_MYCLE : 235- 240: evqvw DcAagA liaae YHK6_YEAST : 4- 9: mti DlAsiE kflce YPSS_RHILP : 41- 46: rtmew DtAagD avlra YPSS_RHILP : 76- 81: taadf DfAnpN fiswg G 7: 9.6952 24( 17) A-x(3,4)-D-x(3)-[DENQR] Occurences: 24(17) CYSQ_ECOLI : 9- 18: qvcql ArnagDaimQ vydgt CYSQ_HAEIN : 158- 167: ksglv AegavDcyvR lgqtg CYSQ_MYCLE : 213- 222: sagak AmavvDgdvD aylhv CYSQ_SALTY : 9- 18: qvcql ArnagDaimQ vydga HAL2_CANAL : 21- 30: kycvl AsgqaDiylR lpvsd HAL2_YEAST : 161- 169: favcl Aliv-DgvvQ lgcig HAL2_YEAST : 272- 281: kycll AlglaDvylR lpikl INPP_BOVIN : 361- 369: vgneg Aagv-DqwaN kggli MYOP_BOVIN : 204- 213: nmclv AagaaDayyE mgihc MYOP_BOVIN : 205- 213: mclva Agaa-DayyE mgihc MYOP_HUMAN : 204- 213: nmclv AtggaDayyE mgihc MYOP_XENLA : 208- 217: nmclv AtggaDayyE mglhc QAX_NEUCR : 246- 255: dlayt AmgsfDiwwE ggcwe QUTG_EMENI : 235- 244: dlayt AmgsvDiwwE ggcwe SUHB_ECOLI : 114- 122: grtev Avvy-DpmrN elfta SUHB_ECOLI : 196- 205: dlayv AagrvDgffE iglrp SUHB_ECOLI : 197- 205: layva Agrv-DgffE iglrp SUHB_ECOLI : 255- 263: vkaml Anmr-DelsD alkr SUHB_HAEIN : 71- 80: teetg AiegkDsdvQ wiidp SUHB_HAEIN : 196- 205: dlcyv AsnriDgyfE mglka SUHB_MYCLE : 219- 228: dlcmv AagqlDayyE hevqv SUHB_MYCLE : 220- 228: lcmva Agql-DayyE hevqv YHK6_YEAST : 215- 224: tmayi AmgylDsywD ggcys YPSS_RHILP : 24- 33: kfcll AegkaDvypR ftrtm H 8: 9.4590 34( 17) T-x(1,2)-A-x(2)-[ADGSTV] Occurences: 34(17) CYSQ_ECOLI : 38- 43: dnspv Ta-AdiA ahtvi CYSQ_ECOLI : 206- 211: tniwd Ta-AghA vaaaa CYSQ_HAEIN : 88- 94: pilst TyyAmcD fgtfk CYSQ_HAEIN : 186- 192: vllge ThgAifD shfep CYSQ_MYCLE : 7- 13: agilr TscAlgD teavn CYSQ_MYCLE : 32- 37: yqael Td-AalA adlat CYSQ_MYCLE : 32- 38: yqael TdaAlaA dlata CYSQ_MYCLE : 147- 152: grrei Td-AavA lparg CYSQ_MYCLE : 165- 171: vyrsd TvtAgaV tggvp CYSQ_MYCLE : 167- 173: rsdtv TagAvtG gvpni CYSQ_SALTY : 38- 43: ddspv Ta-AdiA ahtvi HAL2_CANAL : 2- 8: p TtvAkqT vnlds HAL2_CANAL : 3- 8: pt Tv-AkqT vnlds HAL2_YEAST : 310- 315: aggih Td-AmeD vpldf HAL2_YEAST : 325- 330: fgngr Tl-AtkG viass INPP_BOVIN : 103- 108: pteee Tv-AllS kvlng MYOP_BOVIN : 14- 19: mdyav Tl-AgqA gevvr MYOP_BOVIN : 229- 234: agiiv Te-AggV lldvt MYOP_HUMAN : 14- 19: mdyav Tl-ArqA gevvc MYOP_HUMAN : 229- 234: agiiv Te-AggV lmdvt MYOP_XENLA : 38- 44: simvk TslApaD lvtat MYOP_XENLA : 233- 238: asviv Te-AggT ildat QAX_NEUCR : 92- 97: figee Ty-AksS qstrp QUTG_EMENI : 18- 24: iyafa TdlArkA gqlll SUHB_ECOLI : 25- 31: aknye TpdAveA sqkgs SUHB_ECOLI : 185- 191: adfrr TgsAalD layva SUHB_HAEIN : 69- 74: iitee Tg-AieG kdsdv SUHB_HAEIN : 185- 191: adfrr TgsAalD lcyva SUHB_MYCLE : 20- 26: aesla TeaAafV rcrra SUHB_MYCLE : 94- 99: adlta Tp-AdtV twvld SUHB_MYCLE : 179- 185: mallg TgfAysV vrraa YHK6_YEAST : 210- 215: gssam Tm-AyiA mgyld YHK6_YEAST : 262- 268: dvdnr TylAvrG tinne YPSS_RHILP : 42- 47: tmewd Ta-AgdA vlraa YPSS_RHILP : 71- 76: ygktg Ta-AdfD fanpn I 9: 9.0818 39( 17) G-x(3,4)-L-[ACDGNSTV] Occurences: 39(17) CYSQ_ECOLI : 51- 56: tvimd Glrt-LT pdvpv CYSQ_ECOLI : 108- 113: alidh Gkpi-LG vvyap CYSQ_HAEIN : 178- 184: ewdta GaevlLG ethga CYSQ_MYCLE : 85- 90: raerp Gdav-LS eeahd CYSQ_SALTY : 51- 56: tvile Glrt-LT pdipv HAL2_CANAL : 69- 75: aplnf GngrtLD skgvi HAL2_YEAST : 136- 142: eggrk GrfwcLD pidgt HAL2_YEAST : 166- 171: alivd Gvvq-LG cigcp HAL2_YEAST : 174- 179: qlgci Gcpn-LV lssyg HAL2_YEAST : 321- 327: vpldf GngrtLA tkgvi INPP_BOVIN : 222- 227: gqcyw Glsy-LG tnihs INPP_BOVIN : 292- 297: raaga Gyks-LC vilgl MYOP_BOVIN : 76- 82: esvaa GeksiLT dnptw MYOP_BOVIN : 194- 199: girgv Gtaa-LN mclva MYOP_BOVIN : 232- 237: ivtea Ggvl-LD vtggp MYOP_HUMAN : 76- 82: esvaa GeksiLT dnptw MYOP_XENLA : 79- 85: esvaa GagstLT dnptw MYOP_XENLA : 236- 241: ivtea Ggti-LD atggl QAX_NEUCR : 161- 167: ftack GrgawLN etqrl QAX_NEUCR : 231- 236: ggmvh Gvrs-LG satld QAX_NEUCR : 236- 241: gvrsl Gsat-LD layta QAX_NEUCR : 297- 303: pdvkl GsrlyLV vrpag QUTG_EMENI : 220- 225: ggmvh Gvrs-LG satmd QUTG_EMENI : 285- 291: epvkl GsrlyLA irpag SUHB_ECOLI : 130- 136: ftatr GqgaqLN gyrll SUHB_ECOLI : 137- 142: gaqln Gyrl-LG stard SUHB_ECOLI : 186- 191: dfrrt Gsaa-LD layva SUHB_ECOLI : 233- 239: sdftg GhnymLT gniva SUHB_HAEIN : 130- 136: ftavr GegakLN evrlr SUHB_HAEIN : 186- 191: dfrrt Gsaa-LD lcyva SUHB_MYCLE : 77- 82: aqlrp Gdsi-LG eeggg SUHB_MYCLE : 86- 92: lgeeg GgpadLT atpad SUHB_MYCLE : 87- 92: geegg Gpad-LT atpad SUHB_MYCLE : 209- 214: dvrri Gsaa-LD lcmva SUHB_MYCLE : 260- 265: rngpv Ggag-LV vaaap SUHB_MYCLE : 285- 291: lqrfn GlapiLD YHK6_YEAST : 158- 163: klesm Gsli-LN ksvva YHK6_YEAST : 200- 205: ygfvh Gfrn-LG ssamt YPSS_RHILP : 54- 60: lraag GstvtLD gtplt J 10: 9.0786 33( 17) G-x(0,1)-T-x-[ADEGNQST] Occurences: 33(17) CYSQ_ECOLI : 87- 90: vdpld G-TkE fikrn CYSQ_HAEIN : 52- 55: idpld G-TqQ finrt CYSQ_HAEIN : 124- 128: lriav GaTtS qekvr CYSQ_HAEIN : 169- 173: cyvrl GqTgE wdtag CYSQ_HAEIN : 184- 188: aevll GeThG aifds CYSQ_MYCLE : 12- 16: tscal GdTeA vnmas CYSQ_MYCLE : 113- 116: idpld G-TrE fstag CYSQ_SALTY : 87- 90: vdpld G-TkE fikrn HAL2_CANAL : 71- 75: lnfgn GrTlD skgvi HAL2_YEAST : 146- 149: ldpid G-TkG flrge HAL2_YEAST : 323- 327: ldfgn GrTlA tkgvi INPP_BOVIN : 97- 101: iimrl GpTeE etval INPP_BOVIN : 249- 252: eaqsq G-TqN psseg MYOP_BOVIN : 94- 97: idpid G-TtN fvhgf MYOP_BOVIN : 194- 197: girgv G-TaA lnmcl MYOP_HUMAN : 94- 97: idpid G-TtN fvhrf MYOP_HUMAN : 194- 197: girsv G-TaA vnmcl MYOP_XENLA : 81- 85: vaaga GsTlT dnptw MYOP_XENLA : 97- 100: idpid G-TtN fvhrf MYOP_XENLA : 198- 201: girav G-TaA vnmcl QAX_NEUCR : 119- 122: vdpld G-TvN ythlf QUTG_EMENI : 104- 107: vdpld G-TvN fthaf QUTG_EMENI : 192- 195: rdipd G-TlQ rkies SUHB_ECOLI : 74- 77: sgele G-TdQ dvqwv SUHB_ECOLI : 88- 91: idpld G-TtN fikrl SUHB_HAEIN : 88- 91: idpld G-TrN fmtgl SUHB_MYCLE : 108- 111: ldpid G-TvN fvygi YHK6_YEAST : 96- 99: idpid G-TtN fvhdf YHK6_YEAST : 112- 116: sctsl GlTvN kepvv YHK6_YEAST : 268- 271: ylavr G-TiN nesde YPSS_RHILP : 54- 58: lraag GsTvT ldgtp YPSS_RHILP : 67- 71: tplty GkTgT aadfd YPSS_RHILP : 70- 73: tygkt G-TaA dfdfa K 11: 8.3401 42( 17) L-x(5)-G Occurences: 42(17) CYSQ_ECOLI : 81- 87: wqryw LvdpldG tkefi CYSQ_HAEIN : 46- 52: wkeyw LidpldG tqqfi CYSQ_HAEIN : 182- 188: agaev LlgethG aifds CYSQ_MYCLE : 79- 85: lllsr LraerpG davls CYSQ_MYCLE : 131- 137: avhia LwqrttG gvadg CYSQ_SALTY : 81- 87: wqryw LvdpldG tkefi HAL2_CANAL : 50- 56: aagni LiyesgG qvgdv HAL2_YEAST : 160- 166: qfavc LalivdG vvqlg HAL2_YEAST : 178- 184: igcpn LvlssyG aqdlk HAL2_YEAST : 234- 240: kdmit LegvekG hsshd INPP_BOVIN : 72- 78: nkfpg LgkkifG eesne INPP_BOVIN : 107- 113: etval LskvlnG nklas INPP_BOVIN : 325- 331: aahai LramggG mvdlk MYOP_BOVIN : 158- 164: ditks LlvtelG ssrtp MYOP_BOVIN : 183- 189: nierl LclpihG irgvg MYOP_BOVIN : 235- 241: eaggv LldvtgG pfdlm MYOP_HUMAN : 158- 164: ditks LlvtelG ssrtp MYOP_HUMAN : 235- 241: eaggv LmdvtgG pfdlm MYOP_XENLA : 187- 193: nmerl LcipihG iravg QAX_NEUCR : 155- 161: pmlgq LftackG rgawl QAX_NEUCR : 242- 248: satld LaytamG sfdiw QAX_NEUCR : 302- 308: gsrly LvvrpaG psege QAX_NEUCR : 333- 339: rrvra LdytrpG a QUTG_EMENI : 231- 237: satmd LaytamG svdiw QUTG_EMENI : 290- 296: gsrly LairpaG psete SUHB_ECOLI : 124- 130: pmrne LftatrG qgaql SUHB_ECOLI : 192- 198: saald LayvaaG rvdgf SUHB_ECOLI : 218- 224: faage LlvreaG givsd SUHB_ECOLI : 219- 225: aagel LvreagG ivsdf SUHB_HAEIN : 124- 130: pirne LftavrG egakl SUHB_HAEIN : 218- 224: caagd LivreaG glvcd SUHB_MYCLE : 38- 44: vfgtd LgaaggG avrak SUHB_MYCLE : 71- 77: llrdr LaqlrpG dsilg SUHB_MYCLE : 81- 87: pgdsi LgeeggG padlt SUHB_MYCLE : 172- 178: savdd LsmallG tgfay SUHB_MYCLE : 215- 221: saald LcmvaaG qlday SUHB_MYCLE : 241- 247: caaga LiaaeaG acvql YHK6_YEAST : 15- 21: kflce LatekvG piiks YHK6_YEAST : 132- 138: phinl LvsaskG ngmrv YHK6_YEAST : 190- 196: atyek LlscdyG fvhgf YHK6_YEAST : 219- 225: iamgy LdsywdG gcysw YPSS_RHILP : 64- 70: ldgtp LtygktG taadf L 12: 8.3401 63( 17) A-G Occurences: 63(17) CYSQ_ECOLI : 12- 13: qlarn AG daimq CYSQ_ECOLI : 208- 209: iwdta AG havaa CYSQ_ECOLI : 216- 217: avaaa AG ahvhd CYSQ_HAEIN : 177- 178: gewdt AG aevll CYSQ_MYCLE : 2- 3: m AG ilrts CYSQ_MYCLE : 44- 45: dlata AG ellle CYSQ_MYCLE : 66- 67: ralgd AG drlan CYSQ_MYCLE : 102- 103: rvrlq AG rvwii CYSQ_MYCLE : 120- 121: refst AG rtdwa CYSQ_MYCLE : 168- 169: sdtvt AG avtgg CYSQ_MYCLE : 209- 210: vaigs AG akama CYSQ_MYCLE : 239- 240: dsaap AG vvlaa CYSQ_MYCLE : 245- 246: gvvla AG mhasr CYSQ_SALTY : 12- 13: qlarn AG daimq HAL2_CANAL : 46- 47: iwdha AG niliy HAL2_YEAST : 297- 298: iwdha AG nvivh HAL2_YEAST : 305- 306: vivhe AG gihtd INPP_BOVIN : 289- 290: rifra AG agyks INPP_BOVIN : 291- 292: fraag AG ykslc INPP_BOVIN : 362- 363: gnega AG vdqwa MYOP_BOVIN : 16- 17: yavtl AG qagev MYOP_BOVIN : 19- 20: tlagq AG evvre MYOP_BOVIN : 75- 76: eesva AG eksil MYOP_BOVIN : 205- 206: mclva AG aaday MYOP_BOVIN : 222- 223: hcwdv AG agiiv MYOP_BOVIN : 224- 225: wdvag AG iivte MYOP_BOVIN : 231- 232: iivte AG gvlld MYOP_HUMAN : 19- 20: tlarq AG evvce MYOP_HUMAN : 75- 76: eesva AG eksil MYOP_HUMAN : 222- 223: hcwdv AG agiiv MYOP_HUMAN : 224- 225: wdvag AG iivte MYOP_HUMAN : 231- 232: iivte AG gvlmd MYOP_XENLA : 20- 21: siark AG svvca MYOP_XENLA : 78- 79: eesva AG agstl MYOP_XENLA : 80- 81: svaag AG stltd MYOP_XENLA : 235- 236: vivte AG gtild QAX_NEUCR : 25- 26: qlgkd AG nllme QAX_NEUCR : 265- 266: ewdva AG iailq QAX_NEUCR : 273- 274: ailqe AG glits QAX_NEUCR : 307- 308: lvvrp AG psege QUTG_EMENI : 24- 25: dlark AG qllle QUTG_EMENI : 254- 255: ewdva AG iaill QUTG_EMENI : 262- 263: aille AG glvta QUTG_EMENI : 295- 296: lairp AG psete SUHB_ECOLI : 15- 16: raark AG nliak SUHB_ECOLI : 197- 198: layva AG rvdgf SUHB_ECOLI : 215- 216: pwdfa AG ellvr SUHB_ECOLI : 223- 224: llvre AG givsd SUHB_ECOLI : 244- 245: tgniv AG nprvv SUHB_HAEIN : 15- 16: raark AG nviak SUHB_HAEIN : 215- 216: awdca AG dlivr SUHB_HAEIN : 223- 224: livre AG glvcd SUHB_HAEIN : 232- 233: vcdfd AG nsylr SUHB_MYCLE : 41- 42: tdlga AG ggavr SUHB_MYCLE : 133- 134: dgvsv AG avaev SUHB_MYCLE : 141- 142: vaevv AG rvhsa SUHB_MYCLE : 220- 221: lcmva AG qlday SUHB_MYCLE : 238- 239: vwdca AG aliaa SUHB_MYCLE : 246- 247: liaae AG acvql SUHB_MYCLE : 262- 263: gpvgg AG lvvaa YHK6_YEAST : 234- 235: swdvc AG wcilk YPSS_RHILP : 44- 45: ewdta AG davlr YPSS_RHILP : 52- 53: avlra AG gstvt M 13: 7.8401 80( 17) V-x(2,3)-A Occurences: 80(17) CYSQ_ECOLI : 5- 9: mldq VcqlA rnagd CYSQ_ECOLI : 28- 32: tkpmd VvskA dnspv CYSQ_ECOLI : 29- 32: kpmdv Vsk-A dnspv CYSQ_ECOLI : 37- 40: adnsp Vta-A diaah CYSQ_ECOLI : 100- 103: ngeft Vni-A lidhg CYSQ_ECOLI : 114- 117: kpilg Vvy-A pvmnv CYSQ_ECOLI : 122- 126: apvmn VmysA aegka CYSQ_ECOLI : 144- 147: rkqiq Vrd-A rpplv CYSQ_ECOLI : 212- 215: aagha Vaa-A agahv CYSQ_ECOLI : 212- 216: aagha VaaaA gahvh CYSQ_HAEIN : 79- 82: kpvls Vih-A pilst CYSQ_HAEIN : 157- 161: lksgl VaegA vdcyv CYSQ_MYCLE : 17- 20: gdtea Vnm-A shdkr CYSQ_MYCLE : 98- 102: ahddr VrlqA grvwi CYSQ_MYCLE : 127- 130: rtdwa Vhi-A lwqrt CYSQ_MYCLE : 151- 155: itdaa ValpA rgnrv CYSQ_MYCLE : 166- 170: yrsdt VtagA vtggv CYSQ_MYCLE : 241- 244: aapag Vvl-A agmha CYSQ_MYCLE : 241- 245: aapag VvlaA gmhas CYSQ_MYCLE : 242- 245: apagv Vla-A gmhas CYSQ_MYCLE : 270- 274: ylpdf VmcrA diapi CYSQ_SALTY : 5- 9: mleq VcqlA rnagd CYSQ_SALTY : 19- 23: daimq VydgA kpmey CYSQ_SALTY : 37- 40: qddsp Vta-A diaah HAL2_CANAL : 61- 64: gqvgd Vtg-A plnfg HAL2_CANAL : 79- 82: ldskg Via-A nkeif HAL2_CANAL : 90- 93: eifdk Vid-A vteir HAL2_YEAST : 9- 13: erell VatqA vrkas HAL2_YEAST : 14- 17: vatqa Vrk-A slltk HAL2_YEAST : 158- 161: geqfa Vcl-A livdg HAL2_YEAST : 302- 305: agnvi Vhe-A ggiht INPP_BOVIN : 11- 15: qellr VsekA aniar INPP_BOVIN : 364- 368: egaag VdqwA nkggl MYOP_BOVIN : 13- 16: cmdya Vtl-A gqage MYOP_BOVIN : 22- 26: gqage VvreA lknem MYOP_BOVIN : 23- 26: qagev Vre-A lknem MYOP_BOVIN : 193- 196: hgirg Vgt-A alnmc MYOP_BOVIN : 193- 197: hgirg VgtaA lnmcl MYOP_BOVIN : 203- 207: lnmcl VaagA adayy MYOP_BOVIN : 221- 224: ihcwd Vag-A giivt MYOP_BOVIN : 228- 231: gagii Vte-A ggvll MYOP_HUMAN : 13- 16: cmdya Vtl-A rqage MYOP_HUMAN : 22- 26: rqage VvceA iknem MYOP_HUMAN : 23- 26: qagev Vce-A iknem MYOP_HUMAN : 193- 196: hgirs Vgt-A avnmc MYOP_HUMAN : 193- 197: hgirs VgtaA vnmcl MYOP_HUMAN : 221- 224: ihcwd Vag-A giivt MYOP_HUMAN : 228- 231: gagii Vte-A ggvlm MYOP_HUMAN : 250- 253: lmsrr Via-A nnril MYOP_XENLA : 14- 17: mdfla Vsi-A rkags MYOP_XENLA : 23- 26: rkags Vvc-A alked MYOP_XENLA : 23- 27: rkags VvcaA lkedv MYOP_XENLA : 24- 27: kagsv Vca-A lkedv MYOP_XENLA : 76- 80: igees VaagA gstlt MYOP_XENLA : 197- 200: hgira Vgt-A avnmc MYOP_XENLA : 197- 201: hgira VgtaA vnmcl MYOP_XENLA : 232- 235: aasvi Vte-A ggtil QAX_NEUCR : 132- 135: fpmfc Vsi-A flvdg QAX_NEUCR : 146- 149: tpvig Vic-A pmlgq QAX_NEUCR : 213- 216: kvesf Vnm-A aevgg QAX_NEUCR : 213- 217: kvesf VnmaA evggr QAX_NEUCR : 303- 307: srlyl VvrpA gpseg QAX_NEUCR : 304- 307: rlylv Vrp-A gpseg QUTG_EMENI : 131- 134: ypvig Viy-A pmlnq QUTG_EMENI : 202- 205: kiesf Vnm-A aergs QUTG_EMENI : 202- 206: kiesf VnmaA ergsr QUTG_EMENI : 266- 269: eaggl Vta-A npped SUHB_ECOLI : 9- 12: mlnia Vra-A rkagn SUHB_ECOLI : 43- 46: dfvtn Vdk-A aeavi SUHB_ECOLI : 43- 47: dfvtn VdkaA eavii SUHB_ECOLI : 101- 104: lphfa Vsi-A vrikg SUHB_ECOLI : 220- 223: agell Vre-A ggivs SUHB_ECOLI : 249- 252: agnpr Vvk-A mlanm SUHB_HAEIN : 43- 46: dyvtn Vdk-A seaei SUHB_HAEIN : 101- 104: lphfs Vsi-A vrvkn SUHB_HAEIN : 220- 223: agdli Vre-A gglvc SUHB_MYCLE : 121- 124: ipaya Vsv-A aqvdg SUHB_MYCLE : 121- 125: ipaya VsvaA qvdgv SUHB_MYCLE : 130- 133: aqvdg Vsv-A gavae SUHB_MYCLE : 132- 135: vdgvs Vag-A vaevv SUHB_MYCLE : 144- 147: vvagr Vhs-A asglg SUHB_MYCLE : 144- 148: vvagr VhsaA sglga SUHB_MYCLE : 185- 189: gfays VvrrA aqaal SUHB_MYCLE : 186- 189: faysv Vrr-A aqaal SUHB_MYCLE : 186- 190: faysv VrraA qaall SUHB_MYCLE : 233- 237: ehevq VwdcA agali SUHB_MYCLE : 259- 262: krngp Vgg-A glvva SUHB_MYCLE : 265- 268: ggagl Vva-A apgia SUHB_MYCLE : 265- 269: ggagl VvaaA pgiad SUHB_MYCLE : 266- 269: gaglv Vaa-A pgiad YHK6_YEAST : 246- 249: evggr Vvg-A npgew YPSS_RHILP : 48- 51: aagda Vlr-A aggst YPSS_RHILP : 48- 52: aagda VlraA ggstv YPSS_RHILP : 91- 95: ggrkr VlepA N 14: 7.8401 44( 17) R-x(1,2)-L Occurences: 44(17) CYSQ_ECOLI : 53- 55: imdgl Rt-L tpdvp CYSQ_ECOLI : 78- 81: rqhwq RywL vdpld CYSQ_ECOLI : 148- 151: qvrda RppL vvisr CYSQ_HAEIN : 117- 119: ttnfd Rp-L riavg CYSQ_HAEIN : 133- 136: sqekv RsiL pkdfp CYSQ_HAEIN : 203- 206: ltynq RetL inphf CYSQ_MYCLE : 61- 63: gfdqp Ra-L gdagd CYSQ_MYCLE : 97- 100: eahdd RvrL qagrv CYSQ_MYCLE : 196- 199: ilhri RqkL aiepv CYSQ_SALTY : 53- 55: ilegl Rt-L tpdip CYSQ_SALTY : 78- 81: rqhwq RywL vdpld HAL2_CANAL : 72- 74: nfgng Rt-L dskgv HAL2_YEAST : 5- 7: male Re-L lvatq HAL2_YEAST : 5- 8: male RelL vatqa HAL2_YEAST : 202- 204: ifrav Rg-L gafys HAL2_YEAST : 223- 225: tkihv Rh-L kdtkd HAL2_YEAST : 324- 326: dfgng Rt-L atkgv HAL2_YEAST : 338- 340: assgp Re-L hdlvv INPP_BOVIN : 388- 390: etfls Rl-L qhlap MYOP_BOVIN : 24- 27: agevv ReaL knemn MYOP_BOVIN : 173- 176: tpetv RiiL snier MYOP_BOVIN : 181- 183: lsnie Rl-L clpih MYOP_HUMAN : 173- 176: tpetv RmvL snmek MYOP_HUMAN : 256- 258: iaann Ri-L aeria MYOP_XENLA : 185- 187: lsnme Rl-L cipih QAX_NEUCR : 101- 104: ssqst RpyL vthtt QAX_NEUCR : 171- 174: lnetq RlpL vrqpm QAX_NEUCR : 233- 235: mvhgv Rs-L gsatl QAX_NEUCR : 299- 302: vklgs RlyL vvrpa QAX_NEUCR : 331- 333: vwrrv Ra-L dytrp QUTG_EMENI : 87- 90: akges ReyL ideqp QUTG_EMENI : 222- 224: mvhgv Rs-L gsatm QUTG_EMENI : 287- 290: vklgs RlyL airpa QUTG_EMENI : 319- 321: vwrrv Rq-L dyerp SUHB_ECOLI : 121- 124: vydpm RneL ftatr SUHB_ECOLI : 139- 141: qlngy Rl-L gstar SUHB_ECOLI : 146- 148: lgsta Rd-L dgtil SUHB_ECOLI : 258- 261: mlanm RdeL sdalk SUHB_HAEIN : 121- 124: vydpi RneL ftavr SUHB_HAEIN : 258- 261: mlnki RpcL gaefn SUHB_MYCLE : 65- 67: dtete Rl-L rdrla SUHB_MYCLE : 68- 71: terll RdrL aqlrp YHK6_YEAST : 202- 204: fvhgf Rn-L gssam YHK6_YEAST : 261- 264: idvdn RtyL avrgt YPSS_RHILP : 90- 92: wggrk Rv-L epa O 15: 7.8401 38( 17) R-x(0,1)-L Occurences: 38(17) CYSQ_ECOLI : 53- 55: imdgl RtL tpdvp CYSQ_HAEIN : 117- 119: ttnfd RpL riavg CYSQ_HAEIN : 167- 168: vdcyv R-L gqtge CYSQ_MYCLE : 61- 63: gfdqp RaL gdagd CYSQ_MYCLE : 69- 70: gdagd R-L ansll CYSQ_MYCLE : 78- 79: sllls R-L raerp CYSQ_MYCLE : 99- 100: hddrv R-L qagrv CYSQ_MYCLE : 251- 252: gmhas R-L dgspl CYSQ_SALTY : 53- 55: ilegl RtL tpdip HAL2_CANAL : 30- 31: adiyl R-L pvsdt HAL2_CANAL : 72- 74: nfgng RtL dskgv HAL2_YEAST : 5- 7: male ReL lvatq HAL2_YEAST : 202- 204: ifrav RgL gafys HAL2_YEAST : 223- 225: tkihv RhL kdtkd HAL2_YEAST : 281- 282: advyl R-L pikls HAL2_YEAST : 324- 326: dfgng RtL atkgv HAL2_YEAST : 338- 340: assgp ReL hdlvv INPP_BOVIN : 95- 96: ekiim R-L gptee INPP_BOVIN : 388- 389: etfls R-L lqhla INPP_BOVIN : 388- 390: etfls RlL qhlap MYOP_BOVIN : 181- 182: lsnie R-L lclpi MYOP_BOVIN : 181- 183: lsnie RlL clpih MYOP_HUMAN : 256- 258: iaann RiL aeria MYOP_XENLA : 185- 186: lsnme R-L lcipi MYOP_XENLA : 185- 187: lsnme RlL cipih QAX_NEUCR : 34- 35: lmeaa R-L rfsnn QAX_NEUCR : 171- 172: lnetq R-L plvrq QAX_NEUCR : 233- 235: mvhgv RsL gsatl QAX_NEUCR : 299- 300: vklgs R-L ylvvr QAX_NEUCR : 331- 333: vwrrv RaL dytrp QUTG_EMENI : 222- 224: mvhgv RsL gsatm QUTG_EMENI : 287- 288: vklgs R-L ylair QUTG_EMENI : 319- 321: vwrrv RqL dyerp SUHB_ECOLI : 95- 96: tnfik R-L phfav SUHB_ECOLI : 139- 140: qlngy R-L lgsta SUHB_ECOLI : 139- 141: qlngy RlL gstar SUHB_ECOLI : 146- 148: lgsta RdL dgtil SUHB_HAEIN : 139- 140: klnev R-L rvdsk SUHB_MYCLE : 65- 66: dtete R-L lrdrl SUHB_MYCLE : 65- 67: dtete RlL rdrla SUHB_MYCLE : 70- 71: rllrd R-L aqlrp YHK6_YEAST : 202- 204: fvhgf RnL gssam YPSS_RHILP : 90- 92: wggrk RvL epa P 16: 7.8401 75( 17) G-x(4,5)-V Occurences: 75(17) CYSQ_ECOLI : 13- 19: larna GdaimqV ydgtk CYSQ_ECOLI : 22- 28: mqvyd GtkpmdV vskad CYSQ_ECOLI : 108- 114: alidh GkpilgV vyapv CYSQ_ECOLI : 113- 119: gkpil GvvyapV mnvmy CYSQ_HAEIN : 160- 166: glvae GavdcyV rlgqt CYSQ_MYCLE : 12- 17: tscal Gdtea-V nmash CYSQ_MYCLE : 121- 127: efsta GrtdwaV hialw CYSQ_MYCLE : 169- 175: dtvta GavtggV pnilr CYSQ_MYCLE : 210- 216: aigsa GakamaV vdgdv CYSQ_MYCLE : 282- 287: apill Gvire-V wq CYSQ_SALTY : 13- 19: larna GdaimqV ydgak HAL2_CANAL : 55- 61: liyes GgqvgdV tgapl HAL2_CANAL : 56- 61: iyesg Gqvgd-V tgapl HAL2_YEAST : 77- 83: eesss GlsdafV sgiln HAL2_YEAST : 153- 158: kgflr Geqfa-V clali HAL2_YEAST : 174- 179: qlgci Gcpnl-V lssyg HAL2_YEAST : 195- 201: ghesf GyifraV rglga INPP_BOVIN : 178- 184: gifps GlqcvtV ligvy INPP_BOVIN : 194- 200: ydiqt GvplmgV inqpf INPP_BOVIN : 257- 263: npsse GscrfsV vists INPP_BOVIN : 275- 280: ketik Galsh-V cgeri INPP_BOVIN : 292- 298: raaga GykslcV ilgla MYOP_BOVIN : 17- 22: avtla Gqage-V vreal MYOP_BOVIN : 17- 23: avtla GqagevV realk MYOP_BOVIN : 94- 99: idpid Gttnf-V hgfpf MYOP_BOVIN : 101- 107: tnfvh GfpfvaV sigfv MYOP_BOVIN : 143- 148: gafcn Gqklq-V shqed MYOP_BOVIN : 215- 221: ayyem GihcwdV agagi MYOP_BOVIN : 223- 228: cwdva Gagii-V teagg MYOP_BOVIN : 232- 238: ivtea GgvlldV tggpf MYOP_BOVIN : 233- 238: vteag Gvlld-V tggpf MYOP_HUMAN : 94- 99: idpid Gttnf-V hrfpf MYOP_HUMAN : 120- 126: kkief GvvyscV egkmy MYOP_HUMAN : 143- 148: gafcn Gqklq-V sqqed MYOP_HUMAN : 215- 221: ayyem GihcwdV agagi MYOP_HUMAN : 223- 228: cwdva Gagii-V teagg MYOP_HUMAN : 232- 238: ivtea GgvlmdV tggpf MYOP_HUMAN : 233- 238: vteag Gvlmd-V tggpf MYOP_XENLA : 97- 102: idpid Gttnf-V hrfpf MYOP_XENLA : 123- 129: kqvef GvvyscV edkmy MYOP_XENLA : 146- 151: gsfcn Gqklq-V sgqkd QAX_NEUCR : 140- 146: aflvd GtpvigV icapm QAX_NEUCR : 203- 209: kdrpe GnlyrkV esfvn QAX_NEUCR : 223- 229: evggr GgkggmV hgvrs QAX_NEUCR : 224- 229: vggrg Gkggm-V hgvrs QAX_NEUCR : 226- 232: grggk GgmvhgV rslgs QAX_NEUCR : 227- 232: rggkg Gmvhg-V rslgs QAX_NEUCR : 257- 263: iwweg GcwewdV aagia QAX_NEUCR : 297- 303: pdvkl GsrlylV vrpag QUTG_EMENI : 212- 218: ergsr GgkggmV hgvrs QUTG_EMENI : 213- 218: rgsrg Gkggm-V hgvrs QUTG_EMENI : 215- 221: srggk GgmvhgV rslgs QUTG_EMENI : 216- 221: rggkg Gmvhg-V rslgs QUTG_EMENI : 246- 252: iwweg GcwewdV aagia QUTG_EMENI : 277- 282: pedie Gpiep-V klgsr SUHB_ECOLI : 35- 40: easqk Gsndf-V tnvdk SUHB_ECOLI : 74- 79: sgele Gtdqd-V qwvid SUHB_ECOLI : 109- 115: avrik GrtevaV vydpm SUHB_ECOLI : 245- 250: gniva Gnprv-V kamla SUHB_HAEIN : 35- 40: estqk Gindy-V tnvdk SUHB_HAEIN : 74- 79: tgaie Gkdsd-V qwiid SUHB_HAEIN : 95- 101: rnfmt GlphfsV siavr SUHB_HAEIN : 132- 138: avrge GaklneV rlrvd SUHB_MYCLE : 108- 113: ldpid Gtvnf-V ygipa SUHB_MYCLE : 115- 121: vnfvy GipayaV svaaq SUHB_MYCLE : 134- 139: gvsva Gavae-V vagrv SUHB_MYCLE : 134- 140: gvsva GavaevV agrvh SUHB_MYCLE : 150- 155: hsaas Glgah-V tdeyg SUHB_MYCLE : 180- 185: allgt Gfays-V vrraa SUHB_MYCLE : 180- 186: allgt GfaysvV rraaq SUHB_MYCLE : 260- 265: rngpv Ggagl-V vaaap SUHB_MYCLE : 260- 266: rngpv GgaglvV aaapg SUHB_MYCLE : 261- 266: ngpvg Gaglv-V aaapg YHK6_YEAST : 72- 77: tfkfi Geesy-V kgetv YHK6_YEAST : 96- 101: idpid Gttnf-V hdfpf YHK6_YEAST : 138- 143: vsask Gngmr-V nnkdy YHK6_YEAST : 226- 232: sywdg GcyswdV cagwc YHK6_YEAST : 252- 258: vganp GewsidV dnrty YPSS_RHILP : 86- 91: nfisw Ggrkr-V lepa Q 17: 7.8401 54( 17) I-x(3,4)-G Occurences: 54(17) CYSQ_ECOLI : 92- 96: gtkef Ikrn-G eftvn CYSQ_HAEIN : 47- 52: keywl IdpldG tqqfi CYSQ_MYCLE : 51- 56: ellle IreeiG fdqpr CYSQ_MYCLE : 108- 113: grvwi IdpldG trefs CYSQ_MYCLE : 206- 210: iepva Igsa-G akama CYSQ_SALTY : 92- 96: gtkef Ikrn-G ef HAL2_CANAL : 51- 55: agnil Iyes-G gqvgd HAL2_CANAL : 51- 56: agnil IyesgG qvgdv HAL2_YEAST : 124- 128: edvrq Iidf-G nyegg HAL2_YEAST : 144- 149: wcldp IdgtkG flrge HAL2_YEAST : 232- 236: dtkdm Itle-G vekgh HAL2_YEAST : 301- 306: aagnv IvheaG gihtd HAL2_YEAST : 332- 336: atkgv Iass-G prelh INPP_BOVIN : 92- 97: dlgek IimrlG pteee INPP_BOVIN : 93- 97: lgeki Imrl-G pteee INPP_BOVIN : 168- 173: kgsad ItpnqG ifpsg INPP_BOVIN : 174- 178: tpnqg Ifps-G lqcvt INPP_BOVIN : 285- 290: vcger IfraaG agyks INPP_BOVIN : 324- 329: caaha IlramG ggmvd MYOP_BOVIN : 89- 94: nptwi IdpidG ttnfv MYOP_BOVIN : 187- 192: llclp IhgirG vgtaa MYOP_BOVIN : 190- 194: lpihg Irgv-G taaln MYOP_BOVIN : 227- 232: agagi IvteaG gvlld MYOP_HUMAN : 89- 94: nptwi IdpidG ttnfv MYOP_HUMAN : 185- 189: eklfc Ipvh-G irsvg MYOP_HUMAN : 190- 194: ipvhg Irsv-G taavn MYOP_HUMAN : 227- 232: agagi IvteaG gvlmd MYOP_XENLA : 16- 21: flavs IarkaG svvca MYOP_XENLA : 92- 97: nptwi IdpidG ttnfv MYOP_XENLA : 162- 167: itksm IitelG snrnp MYOP_XENLA : 163- 167: tksmi Itel-G snrnp MYOP_XENLA : 189- 193: erllc Ipih-G iravg MYOP_XENLA : 194- 198: ipihg Irav-G taavn MYOP_XENLA : 231- 236: aaasv IvteaG gtild MYOP_XENLA : 239- 244: eaggt IldatG glfdl QAX_NEUCR : 252- 256: mgsfd Iwwe-G gcwew QAX_NEUCR : 252- 257: mgsfd IwwegG cwewd QAX_NEUCR : 269- 274: aagia IlqeaG glits QUTG_EMENI : 241- 245: mgsvd Iwwe-G gcwew QUTG_EMENI : 241- 246: mgsvd IwwegG cwewd QUTG_EMENI : 258- 263: aagia IlleaG glvta QUTG_EMENI : 292- 296: rlyla Irpa-G psete SUHB_ECOLI : 65- 70: pqhti IteesG elegt SUHB_ECOLI : 83- 88: dvqwv IdpldG ttnfi SUHB_ECOLI : 152- 156: dldgt Ilat-G fpfka SUHB_ECOLI : 169- 173: yatty Iniv-G klfne SUHB_HAEIN : 65- 70: pdhti IteetG aiegk SUHB_HAEIN : 83- 88: dvqwi IdpldG trnfm SUHB_HAEIN : 152- 156: eiqgs Ilat-G fpfkq SUHB_HAEIN : 219- 224: aagdl IvreaG glvcd SUHB_HAEIN : 257- 262: emlnk IrpclG aefnh SUHB_MYCLE : 80- 85: rpgds IlgeeG ggpad SUHB_MYCLE : 242- 247: aagal IaaeaG acvql YHK6_YEAST : 24- 29: kvgpi IksksG tqkdy YHK6_YEAST : 91- 96: dptfi IdpidG ttnfv YHK6_YEAST : 238- 243: cagwc IlkevG grvvg YPSS_RHILP : 83- 87: anpnf Iswg-G rkrvl R 18: 7.8401 45( 17) D-x(3,4)-A Occurences: 45(17) CYSQ_ECOLI : 27- 32: gtkpm DvvskA dnspv CYSQ_HAEIN : 175- 179: qtgew Dtag-A evllg CYSQ_MYCLE : 33- 37: qaelt Daal-A adlat CYSQ_MYCLE : 33- 38: qaelt DaalaA dlata CYSQ_MYCLE : 39- 43: aalaa Dlat-A agell CYSQ_MYCLE : 39- 44: aalaa DlataA gelll CYSQ_MYCLE : 58- 62: eeigf Dqpr-A lgdag CYSQ_MYCLE : 148- 152: rreit Daav-A lparg CYSQ_MYCLE : 164- 168: rvyrs Dtvt-A gavtg CYSQ_MYCLE : 218- 223: amavv DgdvdA ylhvg CYSQ_MYCLE : 234- 239: gqwew DsaapA gvvla CYSQ_SALTY : 34- 39: arkqd DspvtA adiaa HAL2_CANAL : 60- 64: ggqvg Dvtg-A plnfg HAL2_CANAL : 88- 93: nkeif DkvidA vteir HAL2_YEAST : 245- 249: ghssh Deqt-A iknkl INPP_BOVIN : 48- 53: kkfav DfktlA dvlvq INPP_BOVIN : 317- 321: ttfkw Dsca-A hailr MYOP_BOVIN : 41- 45: ksspa Dlvt-A tdqkv MYOP_BOVIN : 220- 224: gihcw Dvag-A giivt MYOP_HUMAN : 41- 45: ksspv Dlvt-A tdqkv MYOP_HUMAN : 220- 224: gihcw Dvag-A giivt MYOP_XENLA : 44- 48: slapa Dlvt-A tdqkv MYOP_XENLA : 224- 228: glhcw Dmaa-A svivt QAX_NEUCR : 67- 72: ivtqt DedveA fiksa QAX_NEUCR : 241- 246: gsatl DlaytA mgsfd QAX_NEUCR : 285- 289: anppe Dwat-A eipdv QUTG_EMENI : 11- 15: pqtel Deiy-A fatdl QUTG_EMENI : 19- 24: yafat DlarkA gqlll QUTG_EMENI : 230- 235: gsatm DlaytA mgsvd QUTG_EMENI : 322- 327: rvrql DyerpA rqs SUHB_ECOLI : 27- 31: nyetp Dave-A sqkgs SUHB_ECOLI : 44- 49: fvtnv DkaaeA viidt SUHB_ECOLI : 149- 154: tardl DgtilA tgfpf SUHB_ECOLI : 191- 196: gsaal DlayvA agrvd SUHB_ECOLI : 259- 264: lanmr DelsdA lkr SUHB_HAEIN : 44- 49: yvtnv DkaseA eiiev SUHB_HAEIN : 191- 196: gsaal DlcyvA snrid SUHB_MYCLE : 37- 41: evfgt Dlga-A gggav SUHB_MYCLE : 128- 133: vaaqv DgvsvA gavae SUHB_MYCLE : 170- 175: rcsav DdlsmA llgtg SUHB_MYCLE : 171- 175: csavd Dlsm-A llgtg SUHB_MYCLE : 214- 219: gsaal DlcmvA agqld SUHB_MYCLE : 235- 240: evqvw DcaagA liaae SUHB_MYCLE : 274- 278: apgia Dall-A alqrf SUHB_MYCLE : 274- 279: apgia DallaA lqrfn YHK6_YEAST : 44- 48: gsrsv Divt-A idkqv YPSS_RHILP : 46- 51: dtaag DavlrA aggst YPSS_RHILP : 74- 78: tgtaa Dfdf-A npnfi S 19: 7.8401 59( 17) A-x(0,1)-D Occurences: 59(17) CYSQ_ECOLI : 12- 14: qlarn AgD aimqv CYSQ_ECOLI : 32- 33: dvvsk A-D nspvt CYSQ_ECOLI : 39- 41: nspvt AaD iaaht CYSQ_ECOLI : 40- 41: spvta A-D iaaht CYSQ_ECOLI : 159- 160: isrsh A-D aelke CYSQ_HAEIN : 4- 5: mte A-D lfvsq CYSQ_HAEIN : 161- 163: lvaeg AvD cyvrl CYSQ_MYCLE : 37- 39: tdaal AaD lataa CYSQ_MYCLE : 38- 39: daala A-D lataa CYSQ_MYCLE : 66- 68: ralgd AgD rlans CYSQ_MYCLE : 93- 95: vlsee AhD drvrl CYSQ_MYCLE : 140- 141: ttggv A-D grrei CYSQ_MYCLE : 274- 275: fvmcr A-D iapil CYSQ_SALTY : 12- 14: qlarn AgD aimqv CYSQ_SALTY : 39- 41: dspvt AaD iaaht CYSQ_SALTY : 40- 41: spvta A-D iaaht HAL2_CANAL : 25- 26: lasgq A-D iylrl HAL2_YEAST : 92- 94: lneik AnD evynk HAL2_YEAST : 185- 187: lssyg AqD lkghe HAL2_YEAST : 276- 277: lalgl A-D vylrl INPP_BOVIN : 46- 48: knkkf AvD fktla INPP_BOVIN : 53- 54: dfktl A-D vlvqe INPP_BOVIN : 135- 137: ffsdp AlD svein INPP_BOVIN : 166- 167: yikgs A-D itpnq INPP_BOVIN : 303- 304: vilgl A-D iyifs MYOP_BOVIN : 2- 3: m A-D pwqec MYOP_BOVIN : 40- 41: vkssp A-D lvtat MYOP_BOVIN : 45- 47: adlvt AtD qkvek MYOP_BOVIN : 207- 209: lvaag AaD ayyem MYOP_BOVIN : 208- 209: vaaga A-D ayyem MYOP_HUMAN : 2- 3: m A-D pwqec MYOP_HUMAN : 45- 47: vdlvt AtD qkvek MYOP_HUMAN : 208- 209: vatgg A-D ayyem MYOP_XENLA : 43- 44: tslap A-D lvtat MYOP_XENLA : 48- 50: adlvt AtD qkvee MYOP_XENLA : 212- 213: vatgg A-D ayyem QAX_NEUCR : 59- 61: tekds AvD ivtqt QAX_NEUCR : 332- 334: wrrvr AlD ytrpg QUTG_EMENI : 17- 19: eiyaf AtD larka QUTG_EMENI : 47- 49: aeken AvD lvtqt SUHB_ECOLI : 145- 147: llgst ArD ldgti SUHB_ECOLI : 180- 181: lfnec A-D frrtg SUHB_ECOLI : 189- 191: rtgsa AlD layva SUHB_HAEIN : 179- 181: alied AaD frrtg SUHB_HAEIN : 180- 181: lieda A-D frrtg SUHB_HAEIN : 189- 191: rtgsa AlD lcyva SUHB_HAEIN : 210- 212: emglk AwD caagd SUHB_HAEIN : 215- 217: awdca AgD livre SUHB_MYCLE : 89- 90: egggp A-D ltatp SUHB_MYCLE : 96- 97: ltatp A-D tvtwv SUHB_MYCLE : 168- 170: vlrcs AvD dlsma SUHB_MYCLE : 212- 214: rigsa AlD lcmva SUHB_MYCLE : 273- 274: aapgi A-D allaa YHK6_YEAST : 48- 50: vdivt AiD kqvek YPSS_RHILP : 4- 5: sfl A-D haifk YPSS_RHILP : 28- 29: laegk A-D vyprf YPSS_RHILP : 44- 46: ewdta AgD avlra YPSS_RHILP : 72- 74: gktgt AaD fdfan YPSS_RHILP : 73- 74: ktgta A-D fdfan T 20: 7.8401 58( 17) T-x(0,1)-A Occurences: 58(17) CYSQ_ECOLI : 38- 39: dnspv T-A adiaa CYSQ_ECOLI : 38- 40: dnspv TaA diaah CYSQ_ECOLI : 206- 207: tniwd T-A aghav CYSQ_ECOLI : 206- 208: tniwd TaA ghava CYSQ_HAEIN : 2- 4: m TeA dlfvs CYSQ_HAEIN : 17- 18: ltekl T-A lfpnv CYSQ_HAEIN : 176- 177: tgewd T-A gaevl CYSQ_MYCLE : 14- 16: calgd TeA vnmas CYSQ_MYCLE : 32- 34: yqael TdA alaad CYSQ_MYCLE : 42- 43: aadla T-A agell CYSQ_MYCLE : 42- 44: aadla TaA gelll CYSQ_MYCLE : 119- 120: trefs T-A grtdw CYSQ_MYCLE : 147- 149: grrei TdA avalp CYSQ_MYCLE : 167- 168: rsdtv T-A gavtg CYSQ_SALTY : 38- 39: ddspv T-A adiaa CYSQ_SALTY : 38- 40: ddspv TaA diaah HAL2_CANAL : 3- 5: pt TvA kqtvn HAL2_CANAL : 62- 64: qvgdv TgA plnfg HAL2_YEAST : 11- 13: ellva TqA vrkas HAL2_YEAST : 248- 249: shdeq T-A iknkl HAL2_YEAST : 310- 312: aggih TdA medvp HAL2_YEAST : 325- 327: fgngr TlA tkgvi INPP_BOVIN : 51- 53: avdfk TlA dvlvq INPP_BOVIN : 103- 105: pteee TvA llskv MYOP_BOVIN : 14- 16: mdyav TlA gqage MYOP_BOVIN : 44- 45: padlv T-A tdqkv MYOP_BOVIN : 195- 196: irgvg T-A alnmc MYOP_BOVIN : 195- 197: irgvg TaA lnmcl MYOP_BOVIN : 229- 231: agiiv TeA ggvll MYOP_BOVIN : 257- 259: assnk TlA eriak MYOP_HUMAN : 14- 16: mdyav TlA rqage MYOP_HUMAN : 44- 45: pvdlv T-A tdqkv MYOP_HUMAN : 132- 133: egkmy T-A rkgkg MYOP_HUMAN : 195- 196: irsvg T-A avnmc MYOP_HUMAN : 195- 197: irsvg TaA vnmcl MYOP_HUMAN : 229- 231: agiiv TeA ggvlm MYOP_XENLA : 47- 48: padlv T-A tdqkv MYOP_XENLA : 199- 200: iravg T-A avnmc MYOP_XENLA : 199- 201: iravg TaA vnmcl MYOP_XENLA : 233- 235: asviv TeA ggtil QAX_NEUCR : 6- 8: mtsrt TtA telde QAX_NEUCR : 7- 8: tsrtt T-A telde QAX_NEUCR : 16- 18: ldeiy TfA vqlgk QAX_NEUCR : 92- 94: figee TyA kssqs QAX_NEUCR : 157- 158: lgqlf T-A ckgrg QAX_NEUCR : 245- 246: ldlay T-A mgsfd QAX_NEUCR : 278- 280: aggli TsA npped QAX_NEUCR : 288- 289: pedwa T-A eipdv QAX_NEUCR : 314- 315: psege T-A regqe QUTG_EMENI : 64- 65: eslik T-A iqtky QUTG_EMENI : 109- 111: gtvnf ThA fpmfc QUTG_EMENI : 171- 172: pplpa T-A pskci QUTG_EMENI : 234- 235: mdlay T-A mgsvd QUTG_EMENI : 267- 268: agglv T-A anppe QUTG_EMENI : 267- 269: agglv TaA npped SUHB_ECOLI : 126- 127: rnelf T-A trgqg SUHB_ECOLI : 144- 145: rllgs T-A rdldg SUHB_HAEIN : 69- 71: iitee TgA iegkd SUHB_HAEIN : 126- 127: rnelf T-A vrgeg SUHB_MYCLE : 20- 22: aesla TeA aafvr SUHB_MYCLE : 92- 93: gpadl T-A tpadt SUHB_MYCLE : 94- 96: adlta TpA dtvtw YHK6_YEAST : 47- 48: svdiv T-A idkqv YHK6_YEAST : 210- 212: gssam TmA yiamg YPSS_RHILP : 42- 43: tmewd T-A agdav YPSS_RHILP : 42- 44: tmewd TaA gdavl YPSS_RHILP : 71- 72: ygktg T-A adfdf YPSS_RHILP : 71- 73: ygktg TaA dfdfa Number of patterns evaluated by Pratt:339 Total running time: 1 seconds