------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 13 sequences from file IF5A_HYPUSINE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 13 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename IF5A_HYPUSINE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: HYPU_SULAC 135 IF51_CHICK 153 IF51_NICPL 159 IF51_YEAST 156 IF52_CHICK 101 IF52_NICPL 159 IF52_YEAST 156 IF5A_CAEEL 161 IF5A_DICDI 169 IF5A_HUMAN 153 IF5A_MEDSA 161 IF5A_NEUCR 163 IF5A_RABIT 153 Pratt run started at Thu Feb 6 20:04:52 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 33.3604 13( 13) K-T-G-K-H-G-x-A-K 2: 32.8604 13( 13) T-x(2,3)-T-G-K-H-G-x-A-K 3: 29.1904 13( 13) T-G-K-H-G-x-A-K 4: 25.0203 13( 13) G-K-H-G-x-A-K 5: 20.8503 13( 13) K-H-G-x-A-K 6: 19.3503 20( 13) T-x-K-x-G-x(0,2)-K-x(3,4)-A 7: 18.8503 13( 13) S-x(3)-T-x(0,2)-G-x(0,2)-K-x-G 8: 16.6802 13( 13) H-G-x-A-K 9: 16.1802 13( 13) F-x(2,3)-K-x(2)-E-x(4)-S 10: 16.1802 13( 13) F-x(3)-K-x(1,2)-E-x(4)-S 11: 15.6802 13( 13) P-x(2,3)-N-x(2)-V-x(3,4)-R 12: 15.6802 16( 13) A-x(0,2)-K-x(3)-V-x-I 13: 15.6802 13( 13) S-x(2)-G-x(0,2)-K-x(4)-K 14: 15.6802 13( 13) K-x(3,4)-V-x(4,5)-P-C 15: 15.1802 25( 13) G-x(0,1)-H-x(0,2)-A-K 16: 14.6802 20( 13) V-x(2,4)-I-x(0,2)-F-x(3)-K 17: 12.5102 15( 13) K-x(2)-E-x(4)-S 18: 12.5102 22( 13) T-G-K 19: 12.5102 18( 13) K-x(3)-V-x-I 20: 12.0102 13( 13) D-L-x(1,2)-P Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 101.8674 13( 13) K-x(3,4)-V-x(4,5)-P-C-[KR]-x(4)-[ST]-x-[AS]-K-T-G-K-H-G-x-A-K-[ACV]-x-[FILMV]-[TV]-[AGT]-[IL]-[DG]-[IL]-F-[NT]-[GST]-x-K-x-[ES]-x-[ILMV]-x-[PV] B 2: 85.5573 13( 13) K-T-G-K-H-G-x-A-K-[ACV]-x-[FILMV]-[TV]-[AGT]-[IL]-[DG]-[IL]-F-[NT]-[GST]-x-K-x-[ES]-x-[ILMV]-x-[PV]-x-[DST]-x(4)-[DV]-[PV] C 3: 85.0573 13( 13) T-x(2,3)-T-G-K-H-G-x-A-K-[ACV]-x-[FILMV]-[TV]-[AGT]-[IL]-[DG]-[IL]-F-[NT]-[GST]-x-K-x-[ES]-x-[ILMV]-x-[PV]-x-[DST]-x(4)-[DV]-[PV] D 4: 81.3872 13( 13) T-G-K-H-G-x-A-K-[ACV]-x-[FILMV]-[TV]-[AGT]-[IL]-[DG]-[IL]-F-[NT]-[GST]-x-K-x-[ES]-x-[ILMV]-x-[PV]-x-[DST]-x(4)-[DV]-[PV] E 5: 77.2172 13( 13) G-K-H-G-x-A-K-[ACV]-x-[FILMV]-[TV]-[AGT]-[IL]-[DG]-[IL]-F-[NT]-[GST]-x-K-x-[ES]-x-[ILMV]-x-[PV]-x-[DST]-x(4)-[DV]-[PV] F 6: 73.0471 13( 13) K-H-G-x-A-K-[ACV]-x-[FILMV]-[TV]-[AGT]-[IL]-[DG]-[IL]-F-[NT]-[GST]-x-K-x-[ES]-x-[ILMV]-x-[PV]-x-[DST]-x(4)-[DV]-[PV] G 7: 68.8771 13( 13) H-G-x-A-K-[ACV]-x-[FILMV]-[TV]-[AGT]-[IL]-[DG]-[IL]-F-[NT]-[GST]-x-K-x-[ES]-x-[ILMV]-x-[PV]-x-[DST]-x(4)-[DV]-[PV] H 8: 67.3771 25( 13) G-x(0,1)-H-x(0,2)-A-K-[ACV]-x-[FILMV]-[TV]-[AGT]-[IL]-[DG]-[IL]-F-[NT]-[GST]-x-K-x-[ES]-x-[ILMV]-x-[PV]-x-[DST]-x(4)-[DV]-[PV] I 9: 38.2195 20( 13) V-x(2,4)-I-x(0,2)-F-[NT]-[GST]-x-K-x-[ES]-x-[ILMV]-x-[PV]-x-[DST]-x(4)-[DV]-[PV] J 10: 37.3509 13( 13) F-[DNT]-x-[EK]-K-x(1,2)-E-x(3)-[PV]-S-x(2)-[NR]-x-[DEG]-[AV]-[EP] K 11: 37.0606 17( 13) T-[GS]-K-x-G-x(0,2)-K-x(3,4)-A-x-[CDGV]-x-[FL]-[TV]-[AGT]-x-[DK] L 12: 33.0693 13( 13) A-x(0,2)-K-[ACNV]-x-[FLMV]-V-[AGV]-I-x-[GIL]-x-[NPT]-[CGST]-x(3)-[DES] M 13: 31.5376 13( 13) F-x(2,3)-K-x(2)-E-x(3)-[PV]-S-x(2)-[NR]-x-[DEG]-[AV]-[EP] N 14: 29.3082 13( 13) K-[ACDGNV]-x-[FLMV]-V-[AGV]-I-x-[GIL]-x-[NPT]-[CGST]-x(3)-[DES] O 15: 27.8675 13( 13) K-x(2)-E-x(3)-[PV]-S-x(2)-[NR]-x-[DEG]-[AV]-[EP] P 16: 25.2306 13( 13) S-x(2)-G-x(0,2)-K-x-[GV]-[HR]-[AV]-K Q 17: 22.7924 13( 13) P-x(2,3)-N-x(2)-V-x(3,4)-R-x-[DEG]-x(2)-[FILV]-x(3)-[DEQS] R 18: 22.0820 13( 13) S-x-[QS]-x-T-x(0,2)-G-x(0,2)-K-x-G S 19: 17.8235 13( 13) F-[DNT]-x-[EK]-K-x(1,2)-E T 20: 16.8292 13( 13) D-L-x(1,2)-P-[EST]-[DEGT] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 101.8674 13( 13) K-x(3,4)-V-x(4,5)-P-C-[KR]-x(4)-[ST]-x-[AS]-K-T-G-K-H-G-x-A-K-[ACV]-x-[FILMV]-[TV]-[AGT]-[IL]-[DG]-[IL]-F-[NT]-[GST]-x-K-x-[ES]-x-[ILMV]-x-[PV] Occurences: 13(13) HYPU_SULAC : 16- 64: tvgdl KvgsyVmidgePCRvveiTkAKTGKHGsAKAnVVAIGLFTGqKrSlMaP vdqqv IF51_CHICK : 27- 74: csalr KngfvVlkgr-PCKivemStSKTGKHGhAKVhLVGIDIFNGkKyEdIcP sthnm IF51_CHICK : 27- 74: csalr Kngf-VvlkgrPCKivemStSKTGKHGhAKVhLVGIDIFNGkKyEdIcP sthnm IF51_NICPL : 29- 76: agtir KnghiViknr-PCKvvevStSKTGKHGhAKChFVAIDIFTGkKlEdIvP sshnc IF51_YEAST : 27- 74: csalr KngfvVikgr-PCKivdmStSKTGKHGhAKVhLVTLDIFTGkKlEdLsP sthnl IF51_YEAST : 27- 74: csalr Kngf-VvikgrPCKivdmStSKTGKHGhAKVhLVTLDIFTGkKlEdLsP sthnl IF52_CHICK : 7- 54: csalr KngfvVlkgr-PCKxxxxStSKTGKHGhAKVhLVGIDIFTGkKyEdIcP sthnm IF52_CHICK : 7- 54: csalr Kngf-VvlkgrPCKxxxxStSKTGKHGhAKVhLVGIDIFTGkKyEdIcP sthnm IF52_NICPL : 29- 76: agtir KnghiVikgr-PCKvvevStSKTGKHGhAKChFVAIDIFTGkKlEdIvP sshnc IF52_YEAST : 27- 74: csalr KngfvViksr-PCKivdmStSKTGKHGhAKVhLVAIDIFTGkKlEdLsP sthnm IF52_YEAST : 27- 74: csalr Kngf-VviksrPCKivdmStSKTGKHGhAKVhLVAIDIFTGkKlEdLsP sthnm IF5A_CAEEL : 31- 78: csalr Kneh-VmirgrPCKivemStSKTGKHGhAKVhMVAIDIFTTkKlEdIcP sthnm IF5A_DICDI : 42- 89: csalr KngfvVikgf-PCKivdmStSKTGKHGhAKVnITAIDIFTGkKyEeIcP sthni IF5A_DICDI : 42- 89: csalr Kngf-VvikgfPCKivdmStSKTGKHGhAKVnITAIDIFTGkKyEeIcP sthni IF5A_HUMAN : 26- 73: csalr KngfvVlkgr-PCKivemStSKTGKHGhAKVhLVGIDIFTGkKyEdIcP sthnm IF5A_HUMAN : 26- 73: csalr Kngf-VvlkgrPCKivemStSKTGKHGhAKVhLVGIDIFTGkKyEdIcP sthnm IF5A_MEDSA : 29- 76: agtir KngyiViknr-PCKvvevStSKTGKHGhAKChFVAIDIFTSkKlEeVyV psshn IF5A_NEUCR : 34- 81: csalr KgghvViknr-PCKivdmStSKTGKHGhAKVhLVAIDIFTGkKlEdLcP sthnm IF5A_NEUCR : 34- 81: csalr Kggh-VviknrPCKivdmStSKTGKHGhAKVhLVAIDIFTGkKlEdLcP sthnm IF5A_RABIT : 26- 73: csalr KngfvVlkgr-PCKivemStSKTGKHGhAKVhLVGIDIFTGkKyEdIcP sthnm IF5A_RABIT : 26- 73: csalr Kngf-VvlkgrPCKivemStSKTGKHGhAKVhLVGIDIFTGkKyEdIcP sthnm B 2: 85.5573 13( 13) K-T-G-K-H-G-x-A-K-[ACV]-x-[FILMV]-[TV]-[AGT]-[IL]-[DG]-[IL]-F-[NT]-[GST]-x-K-x-[ES]-x-[ILMV]-x-[PV]-x-[DST]-x(4)-[DV]-[PV] Occurences: 13(13) HYPU_SULAC : 37- 72: eitka KTGKHGsAKAnVVAIGLFTGqKrSlMaPvDqqveVP iiekh IF51_CHICK : 47- 82: emsts KTGKHGhAKVhLVGIDIFNGkKyEdIcPsThnmdVP nikrn IF51_NICPL : 49- 84: evsts KTGKHGhAKChFVAIDIFTGkKlEdIvPsShncdVP hvnrt IF51_YEAST : 47- 82: dmsts KTGKHGhAKVhLVTLDIFTGkKlEdLsPsThnleVP fvkrs IF52_CHICK : 27- 62: xxsts KTGKHGhAKVhLVGIDIFTGkKyEdIcPsThnmdVP nikrn IF52_NICPL : 49- 84: evsts KTGKHGhAKChFVAIDIFTGkKlEdIvPsShncdVP hvnrt IF52_YEAST : 47- 82: dmsts KTGKHGhAKVhLVAIDIFTGkKlEdLsPsThnmeVP vvkrn IF5A_CAEEL : 51- 86: emsts KTGKHGhAKVhMVAIDIFTTkKlEdIcPsThnmdVP vvkrr IF5A_DICDI : 62- 97: dmsts KTGKHGhAKVnITAIDIFTGkKyEeIcPsThnidVP nvsrk IF5A_HUMAN : 46- 81: emsts KTGKHGhAKVhLVGIDIFTGkKyEdIcPsThnmdVP nikrn IF5A_MEDSA : 49- 84: evsts KTGKHGhAKChFVAIDIFTSkKlEeVyVpSshncDV phvnr IF5A_NEUCR : 54- 89: dmsts KTGKHGhAKVhLVAIDIFTGkKlEdLcPsThnmdVP nvkrt IF5A_RABIT : 46- 81: emsts KTGKHGhAKVhLVGIDIFTGkKyEdIcPsThnmdVP nikrn C 3: 85.0573 13( 13) T-x(2,3)-T-G-K-H-G-x-A-K-[ACV]-x-[FILMV]-[TV]-[AGT]-[IL]-[DG]-[IL]-F-[NT]-[GST]-x-K-x-[ES]-x-[ILMV]-x-[PV]-x-[DST]-x(4)-[DV]-[PV] Occurences: 13(13) HYPU_SULAC : 34- 72: rvvei TkakTGKHGsAKAnVVAIGLFTGqKrSlMaPvDqqveVP iiekh IF51_CHICK : 45- 82: ivems Tsk-TGKHGhAKVhLVGIDIFNGkKyEdIcPsThnmdVP nikrn IF51_NICPL : 47- 84: vvevs Tsk-TGKHGhAKChFVAIDIFTGkKlEdIvPsShncdVP hvnrt IF51_YEAST : 45- 82: ivdms Tsk-TGKHGhAKVhLVTLDIFTGkKlEdLsPsThnleVP fvkrs IF52_CHICK : 25- 62: xxxxs Tsk-TGKHGhAKVhLVGIDIFTGkKyEdIcPsThnmdVP nikrn IF52_NICPL : 47- 84: vvevs Tsk-TGKHGhAKChFVAIDIFTGkKlEdIvPsShncdVP hvnrt IF52_YEAST : 45- 82: ivdms Tsk-TGKHGhAKVhLVAIDIFTGkKlEdLsPsThnmeVP vvkrn IF5A_CAEEL : 49- 86: ivems Tsk-TGKHGhAKVhMVAIDIFTTkKlEdIcPsThnmdVP vvkrr IF5A_DICDI : 60- 97: ivdms Tsk-TGKHGhAKVnITAIDIFTGkKyEeIcPsThnidVP nvsrk IF5A_HUMAN : 44- 81: ivems Tsk-TGKHGhAKVhLVGIDIFTGkKyEdIcPsThnmdVP nikrn IF5A_MEDSA : 47- 84: vvevs Tsk-TGKHGhAKChFVAIDIFTSkKlEeVyVpSshncDV phvnr IF5A_NEUCR : 52- 89: ivdms Tsk-TGKHGhAKVhLVAIDIFTGkKlEdLcPsThnmdVP nvkrt IF5A_RABIT : 44- 81: ivems Tsk-TGKHGhAKVhLVGIDIFTGkKyEdIcPsThnmdVP nikrn D 4: 81.3872 13( 13) T-G-K-H-G-x-A-K-[ACV]-x-[FILMV]-[TV]-[AGT]-[IL]-[DG]-[IL]-F-[NT]-[GST]-x-K-x-[ES]-x-[ILMV]-x-[PV]-x-[DST]-x(4)-[DV]-[PV] Occurences: 13(13) HYPU_SULAC : 38- 72: itkak TGKHGsAKAnVVAIGLFTGqKrSlMaPvDqqveVP iiekh IF51_CHICK : 48- 82: mstsk TGKHGhAKVhLVGIDIFNGkKyEdIcPsThnmdVP nikrn IF51_NICPL : 50- 84: vstsk TGKHGhAKChFVAIDIFTGkKlEdIvPsShncdVP hvnrt IF51_YEAST : 48- 82: mstsk TGKHGhAKVhLVTLDIFTGkKlEdLsPsThnleVP fvkrs IF52_CHICK : 28- 62: xstsk TGKHGhAKVhLVGIDIFTGkKyEdIcPsThnmdVP nikrn IF52_NICPL : 50- 84: vstsk TGKHGhAKChFVAIDIFTGkKlEdIvPsShncdVP hvnrt IF52_YEAST : 48- 82: mstsk TGKHGhAKVhLVAIDIFTGkKlEdLsPsThnmeVP vvkrn IF5A_CAEEL : 52- 86: mstsk TGKHGhAKVhMVAIDIFTTkKlEdIcPsThnmdVP vvkrr IF5A_DICDI : 63- 97: mstsk TGKHGhAKVnITAIDIFTGkKyEeIcPsThnidVP nvsrk IF5A_HUMAN : 47- 81: mstsk TGKHGhAKVhLVGIDIFTGkKyEdIcPsThnmdVP nikrn IF5A_MEDSA : 50- 84: vstsk TGKHGhAKChFVAIDIFTSkKlEeVyVpSshncDV phvnr IF5A_NEUCR : 55- 89: mstsk TGKHGhAKVhLVAIDIFTGkKlEdLcPsThnmdVP nvkrt IF5A_RABIT : 47- 81: mstsk TGKHGhAKVhLVGIDIFTGkKyEdIcPsThnmdVP nikrn E 5: 77.2172 13( 13) G-K-H-G-x-A-K-[ACV]-x-[FILMV]-[TV]-[AGT]-[IL]-[DG]-[IL]-F-[NT]-[GST]-x-K-x-[ES]-x-[ILMV]-x-[PV]-x-[DST]-x(4)-[DV]-[PV] Occurences: 13(13) HYPU_SULAC : 39- 72: tkakt GKHGsAKAnVVAIGLFTGqKrSlMaPvDqqveVP iiekh IF51_CHICK : 49- 82: stskt GKHGhAKVhLVGIDIFNGkKyEdIcPsThnmdVP nikrn IF51_NICPL : 51- 84: stskt GKHGhAKChFVAIDIFTGkKlEdIvPsShncdVP hvnrt IF51_YEAST : 49- 82: stskt GKHGhAKVhLVTLDIFTGkKlEdLsPsThnleVP fvkrs IF52_CHICK : 29- 62: stskt GKHGhAKVhLVGIDIFTGkKyEdIcPsThnmdVP nikrn IF52_NICPL : 51- 84: stskt GKHGhAKChFVAIDIFTGkKlEdIvPsShncdVP hvnrt IF52_YEAST : 49- 82: stskt GKHGhAKVhLVAIDIFTGkKlEdLsPsThnmeVP vvkrn IF5A_CAEEL : 53- 86: stskt GKHGhAKVhMVAIDIFTTkKlEdIcPsThnmdVP vvkrr IF5A_DICDI : 64- 97: stskt GKHGhAKVnITAIDIFTGkKyEeIcPsThnidVP nvsrk IF5A_HUMAN : 48- 81: stskt GKHGhAKVhLVGIDIFTGkKyEdIcPsThnmdVP nikrn IF5A_MEDSA : 51- 84: stskt GKHGhAKChFVAIDIFTSkKlEeVyVpSshncDV phvnr IF5A_NEUCR : 56- 89: stskt GKHGhAKVhLVAIDIFTGkKlEdLcPsThnmdVP nvkrt IF5A_RABIT : 48- 81: stskt GKHGhAKVhLVGIDIFTGkKyEdIcPsThnmdVP nikrn F 6: 73.0471 13( 13) K-H-G-x-A-K-[ACV]-x-[FILMV]-[TV]-[AGT]-[IL]-[DG]-[IL]-F-[NT]-[GST]-x-K-x-[ES]-x-[ILMV]-x-[PV]-x-[DST]-x(4)-[DV]-[PV] Occurences: 13(13) HYPU_SULAC : 40- 72: kaktg KHGsAKAnVVAIGLFTGqKrSlMaPvDqqveVP iiekh IF51_CHICK : 50- 82: tsktg KHGhAKVhLVGIDIFNGkKyEdIcPsThnmdVP nikrn IF51_NICPL : 52- 84: tsktg KHGhAKChFVAIDIFTGkKlEdIvPsShncdVP hvnrt IF51_YEAST : 50- 82: tsktg KHGhAKVhLVTLDIFTGkKlEdLsPsThnleVP fvkrs IF52_CHICK : 30- 62: tsktg KHGhAKVhLVGIDIFTGkKyEdIcPsThnmdVP nikrn IF52_NICPL : 52- 84: tsktg KHGhAKChFVAIDIFTGkKlEdIvPsShncdVP hvnrt IF52_YEAST : 50- 82: tsktg KHGhAKVhLVAIDIFTGkKlEdLsPsThnmeVP vvkrn IF5A_CAEEL : 54- 86: tsktg KHGhAKVhMVAIDIFTTkKlEdIcPsThnmdVP vvkrr IF5A_DICDI : 65- 97: tsktg KHGhAKVnITAIDIFTGkKyEeIcPsThnidVP nvsrk IF5A_HUMAN : 49- 81: tsktg KHGhAKVhLVGIDIFTGkKyEdIcPsThnmdVP nikrn IF5A_MEDSA : 52- 84: tsktg KHGhAKChFVAIDIFTSkKlEeVyVpSshncDV phvnr IF5A_NEUCR : 57- 89: tsktg KHGhAKVhLVAIDIFTGkKlEdLcPsThnmdVP nvkrt IF5A_RABIT : 49- 81: tsktg KHGhAKVhLVGIDIFTGkKyEdIcPsThnmdVP nikrn G 7: 68.8771 13( 13) H-G-x-A-K-[ACV]-x-[FILMV]-[TV]-[AGT]-[IL]-[DG]-[IL]-F-[NT]-[GST]-x-K-x-[ES]-x-[ILMV]-x-[PV]-x-[DST]-x(4)-[DV]-[PV] Occurences: 13(13) HYPU_SULAC : 41- 72: aktgk HGsAKAnVVAIGLFTGqKrSlMaPvDqqveVP iiekh IF51_CHICK : 51- 82: sktgk HGhAKVhLVGIDIFNGkKyEdIcPsThnmdVP nikrn IF51_NICPL : 53- 84: sktgk HGhAKChFVAIDIFTGkKlEdIvPsShncdVP hvnrt IF51_YEAST : 51- 82: sktgk HGhAKVhLVTLDIFTGkKlEdLsPsThnleVP fvkrs IF52_CHICK : 31- 62: sktgk HGhAKVhLVGIDIFTGkKyEdIcPsThnmdVP nikrn IF52_NICPL : 53- 84: sktgk HGhAKChFVAIDIFTGkKlEdIvPsShncdVP hvnrt IF52_YEAST : 51- 82: sktgk HGhAKVhLVAIDIFTGkKlEdLsPsThnmeVP vvkrn IF5A_CAEEL : 55- 86: sktgk HGhAKVhMVAIDIFTTkKlEdIcPsThnmdVP vvkrr IF5A_DICDI : 66- 97: sktgk HGhAKVnITAIDIFTGkKyEeIcPsThnidVP nvsrk IF5A_HUMAN : 50- 81: sktgk HGhAKVhLVGIDIFTGkKyEdIcPsThnmdVP nikrn IF5A_MEDSA : 53- 84: sktgk HGhAKChFVAIDIFTSkKlEeVyVpSshncDV phvnr IF5A_NEUCR : 58- 89: sktgk HGhAKVhLVAIDIFTGkKlEdLcPsThnmdVP nvkrt IF5A_RABIT : 50- 81: sktgk HGhAKVhLVGIDIFTGkKyEdIcPsThnmdVP nikrn H 8: 67.3771 25( 13) G-x(0,1)-H-x(0,2)-A-K-[ACV]-x-[FILMV]-[TV]-[AGT]-[IL]-[DG]-[IL]-F-[NT]-[GST]-x-K-x-[ES]-x-[ILMV]-x-[PV]-x-[DST]-x(4)-[DV]-[PV] Occurences: 25(13) HYPU_SULAC : 39- 72: tkakt GkHgsAKAnVVAIGLFTGqKrSlMaPvDqqveVP iiekh IF51_CHICK : 49- 82: stskt GkHghAKVhLVGIDIFNGkKyEdIcPsThnmdVP nikrn IF51_CHICK : 52- 82: ktgkh G-H--AKVhLVGIDIFNGkKyEdIcPsThnmdVP nikrn IF51_NICPL : 51- 84: stskt GkHghAKChFVAIDIFTGkKlEdIvPsShncdVP hvnrt IF51_NICPL : 54- 84: ktgkh G-H--AKChFVAIDIFTGkKlEdIvPsShncdVP hvnrt IF51_YEAST : 49- 82: stskt GkHghAKVhLVTLDIFTGkKlEdLsPsThnleVP fvkrs IF51_YEAST : 52- 82: ktgkh G-H--AKVhLVTLDIFTGkKlEdLsPsThnleVP fvkrs IF52_CHICK : 29- 62: stskt GkHghAKVhLVGIDIFTGkKyEdIcPsThnmdVP nikrn IF52_CHICK : 32- 62: ktgkh G-H--AKVhLVGIDIFTGkKyEdIcPsThnmdVP nikrn IF52_NICPL : 51- 84: stskt GkHghAKChFVAIDIFTGkKlEdIvPsShncdVP hvnrt IF52_NICPL : 54- 84: ktgkh G-H--AKChFVAIDIFTGkKlEdIvPsShncdVP hvnrt IF52_YEAST : 49- 82: stskt GkHghAKVhLVAIDIFTGkKlEdLsPsThnmeVP vvkrn IF52_YEAST : 52- 82: ktgkh G-H--AKVhLVAIDIFTGkKlEdLsPsThnmeVP vvkrn IF5A_CAEEL : 53- 86: stskt GkHghAKVhMVAIDIFTTkKlEdIcPsThnmdVP vvkrr IF5A_CAEEL : 56- 86: ktgkh G-H--AKVhMVAIDIFTTkKlEdIcPsThnmdVP vvkrr IF5A_DICDI : 64- 97: stskt GkHghAKVnITAIDIFTGkKyEeIcPsThnidVP nvsrk IF5A_DICDI : 67- 97: ktgkh G-H--AKVnITAIDIFTGkKyEeIcPsThnidVP nvsrk IF5A_HUMAN : 48- 81: stskt GkHghAKVhLVGIDIFTGkKyEdIcPsThnmdVP nikrn IF5A_HUMAN : 51- 81: ktgkh G-H--AKVhLVGIDIFTGkKyEdIcPsThnmdVP nikrn IF5A_MEDSA : 51- 84: stskt GkHghAKChFVAIDIFTSkKlEeVyVpSshncDV phvnr IF5A_MEDSA : 54- 84: ktgkh G-H--AKChFVAIDIFTSkKlEeVyVpSshncDV phvnr IF5A_NEUCR : 56- 89: stskt GkHghAKVhLVAIDIFTGkKlEdLcPsThnmdVP nvkrt IF5A_NEUCR : 59- 89: ktgkh G-H--AKVhLVAIDIFTGkKlEdLcPsThnmdVP nvkrt IF5A_RABIT : 48- 81: stskt GkHghAKVhLVGIDIFTGkKyEdIcPsThnmdVP nikrn IF5A_RABIT : 51- 81: ktgkh G-H--AKVhLVGIDIFTGkKyEdIcPsThnmdVP nikrn I 9: 38.2195 20( 13) V-x(2,4)-I-x(0,2)-F-[NT]-[GST]-x-K-x-[ES]-x-[ILMV]-x-[PV]-x-[DST]-x(4)-[DV]-[PV] Occurences: 20(13) HYPU_SULAC : 48- 72: sakan Vva--IglFTGqKrSlMaPvDqqveVP iiekh IF51_CHICK : 56- 82: hghak VhlvgIdiFNGkKyEdIcPsThnmdVP nikrn IF51_CHICK : 59- 82: akvhl Vgid-I--FNGkKyEdIcPsThnmdVP nikrn IF51_NICPL : 61- 84: akchf Vaid-I--FTGkKlEdIvPsShncdVP hvnrt IF51_YEAST : 59- 82: akvhl Vtld-I--FTGkKlEdLsPsThnleVP fvkrs IF52_CHICK : 36- 62: hghak VhlvgIdiFTGkKyEdIcPsThnmdVP nikrn IF52_CHICK : 39- 62: akvhl Vgid-I--FTGkKyEdIcPsThnmdVP nikrn IF52_NICPL : 61- 84: akchf Vaid-I--FTGkKlEdIvPsShncdVP hvnrt IF52_YEAST : 56- 82: hghak VhlvaIdiFTGkKlEdLsPsThnmeVP vvkrn IF52_YEAST : 59- 82: akvhl Vaid-I--FTGkKlEdLsPsThnmeVP vvkrn IF5A_CAEEL : 60- 86: hghak VhmvaIdiFTTkKlEdIcPsThnmdVP vvkrr IF5A_CAEEL : 63- 86: akvhm Vaid-I--FTTkKlEdIcPsThnmdVP vvkrr IF5A_DICDI : 71- 97: hghak VnitaIdiFTGkKyEeIcPsThnidVP nvsrk IF5A_HUMAN : 55- 81: hghak VhlvgIdiFTGkKyEdIcPsThnmdVP nikrn IF5A_HUMAN : 58- 81: akvhl Vgid-I--FTGkKyEdIcPsThnmdVP nikrn IF5A_MEDSA : 61- 84: akchf Vaid-I--FTSkKlEeVyVpSshncDV phvnr IF5A_NEUCR : 63- 89: hghak VhlvaIdiFTGkKlEdLcPsThnmdVP nvkrt IF5A_NEUCR : 66- 89: akvhl Vaid-I--FTGkKlEdLcPsThnmdVP nvkrt IF5A_RABIT : 55- 81: hghak VhlvgIdiFTGkKyEdIcPsThnmdVP nikrn IF5A_RABIT : 58- 81: akvhl Vgid-I--FTGkKyEdIcPsThnmdVP nikrn J 10: 37.3509 13( 13) F-[DNT]-x-[EK]-K-x(1,2)-E-x(3)-[PV]-S-x(2)-[NR]-x-[DEG]-[AV]-[EP] Occurences: 13(13) HYPU_SULAC : 100- 119: esyet FDlEKptEneiVSkiRpGAE ieyws IF51_CHICK : 64- 82: vgidi FNgKKy-EdicPSthNmDVP nikrn IF51_NICPL : 66- 84: vaidi FTgKKl-EdivPSshNcDVP hvnrt IF51_YEAST : 64- 82: vtldi FTgKKl-EdlsPSthNlEVP fvkrs IF52_CHICK : 44- 62: vgidi FTgKKy-EdicPSthNmDVP nikrn IF52_NICPL : 66- 84: vaidi FTgKKl-EdivPSshNcDVP hvnrt IF52_YEAST : 64- 82: vaidi FTgKKl-EdlsPSthNmEVP vvkrn IF5A_CAEEL : 68- 86: vaidi FTtKKl-EdicPSthNmDVP vvkrr IF5A_DICDI : 79- 97: taidi FTgKKy-EeicPSthNiDVP nvsrk IF5A_HUMAN : 63- 81: vgidi FTgKKy-EdicPSthNmDVP nikrn IF5A_MEDSA : 66- 85: vaidi FTsKKleEvyvPSshNcDVP hvnrt IF5A_NEUCR : 71- 89: vaidi FTgKKl-EdlcPSthNmDVP nvkrt IF5A_RABIT : 63- 81: vgidi FTgKKy-EdicPSthNmDVP nikrn K 11: 37.0606 17( 13) T-[GS]-K-x-G-x(0,2)-K-x(3,4)-A-x-[CDGV]-x-[FL]-[TV]-[AGT]-x-[DK] Occurences: 17(13) HYPU_SULAC : 38- 58: itkak TGKhGsaKanvvAiGlFTGqK rslma IF51_CHICK : 45- 62: ivems TSKtG--Khgh-AkVhLVGiD ifngk IF51_NICPL : 47- 64: vvevs TSKtG--Khgh-AkChFVAiD iftgk IF51_NICPL : 50- 70: vstsk TGKhGhaKchfvAiDiFTGkK lediv IF51_YEAST : 45- 62: ivdms TSKtG--Khgh-AkVhLVTlD iftgk IF52_CHICK : 25- 42: xxxxs TSKtG--Khgh-AkVhLVGiD iftgk IF52_NICPL : 47- 64: vvevs TSKtG--Khgh-AkChFVAiD iftgk IF52_NICPL : 50- 70: vstsk TGKhGhaKchfvAiDiFTGkK lediv IF52_YEAST : 45- 62: ivdms TSKtG--Khgh-AkVhLVAiD iftgk IF52_YEAST : 48- 68: mstsk TGKhGhaKvhlvAiDiFTGkK ledls IF5A_CAEEL : 52- 72: mstsk TGKhGhaKvhmvAiDiFTTkK ledic IF5A_DICDI : 63- 83: mstsk TGKhGhaKvnitAiDiFTGkK yeeic IF5A_HUMAN : 44- 61: ivems TSKtG--Khgh-AkVhLVGiD iftgk IF5A_MEDSA : 47- 64: vvevs TSKtG--Khgh-AkChFVAiD iftsk IF5A_NEUCR : 52- 69: ivdms TSKtG--Khgh-AkVhLVAiD iftgk IF5A_NEUCR : 55- 75: mstsk TGKhGhaKvhlvAiDiFTGkK ledlc IF5A_RABIT : 44- 61: ivems TSKtG--Khgh-AkVhLVGiD iftgk L 12: 33.0693 13( 13) A-x(0,2)-K-[ACNV]-x-[FLMV]-V-[AGV]-I-x-[GIL]-x-[NPT]-[CGST]-x(3)-[DES] Occurences: 13(13) HYPU_SULAC : 44- 60: gkhgs A--KAnVVAIgLfTGqkrS lmapv IF51_CHICK : 54- 70: gkhgh A--KVhLVGIdIfNGkkyE dicps IF51_NICPL : 56- 72: gkhgh A--KChFVAIdIfTGkklE divps IF51_YEAST : 24- 42: pmqcs AlrKNgFVVIkGrPCkivD mstsk IF52_CHICK : 34- 50: gkhgh A--KVhLVGIdIfTGkkyE dicps IF52_NICPL : 56- 72: gkhgh A--KChFVAIdIfTGkklE divps IF52_YEAST : 54- 70: gkhgh A--KVhLVAIdIfTGkklE dlsps IF5A_CAEEL : 58- 74: gkhgh A--KVhMVAIdIfTTkklE dicps IF5A_DICDI : 39- 57: piqcs AlrKNgFVVIkGfPCkivD mstsk IF5A_HUMAN : 53- 69: gkhgh A--KVhLVGIdIfTGkkyE dicps IF5A_MEDSA : 56- 72: gkhgh A--KChFVAIdIfTSkklE evyvp IF5A_NEUCR : 61- 77: gkhgh A--KVhLVAIdIfTGkklE dlcps IF5A_RABIT : 53- 69: gkhgh A--KVhLVGIdIfTGkkyE dicps M 13: 31.5376 13( 13) F-x(2,3)-K-x(2)-E-x(3)-[PV]-S-x(2)-[NR]-x-[DEG]-[AV]-[EP] Occurences: 13(13) HYPU_SULAC : 100- 119: esyet FdleKptEneiVSkiRpGAE ieyws IF51_CHICK : 64- 82: vgidi Fng-KkyEdicPSthNmDVP nikrn IF51_NICPL : 66- 84: vaidi Ftg-KklEdivPSshNcDVP hvnrt IF51_YEAST : 64- 82: vtldi Ftg-KklEdlsPSthNlEVP fvkrs IF52_CHICK : 44- 62: vgidi Ftg-KkyEdicPSthNmDVP nikrn IF52_NICPL : 66- 84: vaidi Ftg-KklEdivPSshNcDVP hvnrt IF52_YEAST : 64- 82: vaidi Ftg-KklEdlsPSthNmEVP vvkrn IF5A_CAEEL : 68- 86: vaidi Ftt-KklEdicPSthNmDVP vvkrr IF5A_DICDI : 79- 97: taidi Ftg-KkyEeicPSthNiDVP nvsrk IF5A_HUMAN : 63- 81: vgidi Ftg-KkyEdicPSthNmDVP nikrn IF5A_MEDSA : 66- 85: vaidi FtskKleEvyvPSshNcDVP hvnrt IF5A_NEUCR : 71- 89: vaidi Ftg-KklEdlcPSthNmDVP nvkrt IF5A_RABIT : 63- 81: vgidi Ftg-KkyEdicPSthNmDVP nikrn N 14: 29.3082 13( 13) K-[ACDGNV]-x-[FLMV]-V-[AGV]-I-x-[GIL]-x-[NPT]-[CGST]-x(3)-[DES] Occurences: 13(13) HYPU_SULAC : 45- 60: khgsa KAnVVAIgLfTGqkrS lmapv IF51_CHICK : 55- 70: khgha KVhLVGIdIfNGkkyE dicps IF51_NICPL : 57- 72: khgha KChFVAIdIfTGkklE divps IF51_YEAST : 27- 42: csalr KNgFVVIkGrPCkivD mstsk IF52_CHICK : 35- 50: khgha KVhLVGIdIfTGkkyE dicps IF52_NICPL : 57- 72: khgha KChFVAIdIfTGkklE divps IF52_YEAST : 55- 70: khgha KVhLVAIdIfTGkklE dlsps IF5A_CAEEL : 59- 74: khgha KVhMVAIdIfTTkklE dicps IF5A_DICDI : 42- 57: csalr KNgFVVIkGfPCkivD mstsk IF5A_HUMAN : 54- 69: khgha KVhLVGIdIfTGkkyE dicps IF5A_MEDSA : 57- 72: khgha KChFVAIdIfTSkklE evyvp IF5A_NEUCR : 62- 77: khgha KVhLVAIdIfTGkklE dlcps IF5A_RABIT : 54- 69: khgha KVhLVGIdIfTGkkyE dicps O 15: 27.8675 13( 13) K-x(2)-E-x(3)-[PV]-S-x(2)-[NR]-x-[DEG]-[AV]-[EP] Occurences: 13(13) HYPU_SULAC : 104- 119: tfdle KptEneiVSkiRpGAE ieyws IF51_CHICK : 67- 82: difng KkyEdicPSthNmDVP nikrn IF51_NICPL : 69- 84: diftg KklEdivPSshNcDVP hvnrt IF51_YEAST : 67- 82: diftg KklEdlsPSthNlEVP fvkrs IF52_CHICK : 47- 62: diftg KkyEdicPSthNmDVP nikrn IF52_NICPL : 69- 84: diftg KklEdivPSshNcDVP hvnrt IF52_YEAST : 67- 82: diftg KklEdlsPSthNmEVP vvkrn IF5A_CAEEL : 71- 86: diftt KklEdicPSthNmDVP vvkrr IF5A_DICDI : 82- 97: diftg KkyEeicPSthNiDVP nvsrk IF5A_HUMAN : 66- 81: diftg KkyEdicPSthNmDVP nikrn IF5A_MEDSA : 70- 85: iftsk KleEvyvPSshNcDVP hvnrt IF5A_NEUCR : 74- 89: diftg KklEdlcPSthNmDVP nvkrt IF5A_RABIT : 66- 81: diftg KkyEdicPSthNmDVP nikrn P 16: 25.2306 13( 13) S-x(2)-G-x(0,2)-K-x-[GV]-[HR]-[AV]-K Occurences: 13(13) HYPU_SULAC : 124- 135: eieyw SvmGrrKiVRVK IF51_CHICK : 46- 55: vemst SktG--KhGHAK vhlvg IF51_NICPL : 48- 57: vevst SktG--KhGHAK chfva IF51_YEAST : 46- 55: vdmst SktG--KhGHAK vhlvt IF52_CHICK : 26- 35: xxxst SktG--KhGHAK vhlvg IF52_NICPL : 48- 57: vevst SktG--KhGHAK chfva IF52_YEAST : 46- 55: vdmst SktG--KhGHAK vhlva IF5A_CAEEL : 50- 59: vemst SktG--KhGHAK vhmva IF5A_DICDI : 61- 70: vdmst SktG--KhGHAK vnita IF5A_HUMAN : 45- 54: vemst SktG--KhGHAK vhlvg IF5A_MEDSA : 48- 57: vevst SktG--KhGHAK chfva IF5A_NEUCR : 53- 62: vdmst SktG--KhGHAK vhlva IF5A_RABIT : 45- 54: vemst SktG--KhGHAK vhlvg Q 17: 22.7924 13( 13) P-x(2,3)-N-x(2)-V-x(3,4)-R-x-[DEG]-x(2)-[FILV]-x(3)-[DEQS] Occurences: 13(13) HYPU_SULAC : 105- 124: fdlek Pte-NeiVski-RpGaeIeywS vmgrr IF51_CHICK : 74- 95: yedic PsthNmdVpnikRnDyqLigiQ dgyls IF51_NICPL : 76- 97: lediv PsshNcdVphvnRtDyqLidiS edgfv IF51_YEAST : 74- 95: ledls PsthNleVpfvkRsEyqLldiD dgyls IF52_CHICK : 54- 75: yedic PsthNmdVpnikRnDfqLigiQ dgfls IF52_NICPL : 76- 97: lediv PsshNcdVphvnRtDyqLidiS edgfv IF52_YEAST : 74- 95: ledls PsthNmeVpvvkRnEyqLldiD dgfls IF5A_CAEEL : 78- 99: ledic PsthNmdVpvvkRrEyiLmsiE dgfcs IF5A_DICDI : 89- 110: yeeic PsthNidVpnvsRkEytVmdvQ dgyls IF5A_HUMAN : 73- 94: yedic PsthNmdVpnikRnDfqLigiQ dgyls IF5A_MEDSA : 77- 98: eevyv PsshNcdVphvnRtDyqLidiS edgfv IF5A_NEUCR : 81- 102: ledlc PsthNmdVpnvkRtDyqFsyiD edflv IF5A_RABIT : 73- 94: yedic PsthNmdVpnikRnDfqLigiQ dgyls R 18: 22.0820 13( 13) S-x-[QS]-x-T-x(0,2)-G-x(0,2)-K-x-G Occurences: 13(13) HYPU_SULAC : 6- 18: mgiqm SiQyTtvGdlKvG syvmi IF51_CHICK : 44- 52: kivem StSkT--G--KhG hakvh IF51_NICPL : 46- 54: kvvev StSkT--G--KhG hakch IF51_YEAST : 44- 52: kivdm StSkT--G--KhG hakvh IF52_CHICK : 24- 32: kxxxx StSkT--G--KhG hakvh IF52_NICPL : 46- 54: kvvev StSkT--G--KhG hakch IF52_YEAST : 44- 52: kivdm StSkT--G--KhG hakvh IF5A_CAEEL : 48- 56: kivem StSkT--G--KhG hakvh IF5A_DICDI : 59- 67: kivdm StSkT--G--KhG hakvn IF5A_HUMAN : 43- 51: kivem StSkT--G--KhG hakvh IF5A_MEDSA : 46- 54: kvvev StSkT--G--KhG hakch IF5A_NEUCR : 51- 59: kivdm StSkT--G--KhG hakvh IF5A_RABIT : 43- 51: kivem StSkT--G--KhG hakvh S 19: 17.8235 13( 13) F-[DNT]-x-[EK]-K-x(1,2)-E Occurences: 13(13) HYPU_SULAC : 100- 107: esyet FDlEKptE neivs IF51_CHICK : 64- 70: vgidi FNgKKy-E dicps IF51_NICPL : 66- 72: vaidi FTgKKl-E divps IF51_YEAST : 64- 70: vtldi FTgKKl-E dlsps IF52_CHICK : 44- 50: vgidi FTgKKy-E dicps IF52_NICPL : 66- 72: vaidi FTgKKl-E divps IF52_YEAST : 64- 70: vaidi FTgKKl-E dlsps IF5A_CAEEL : 68- 74: vaidi FTtKKl-E dicps IF5A_DICDI : 79- 85: taidi FTgKKy-E eicps IF5A_HUMAN : 63- 69: vgidi FTgKKy-E dicps IF5A_MEDSA : 66- 73: vaidi FTsKKleE vyvps IF5A_NEUCR : 71- 77: vaidi FTgKKl-E dlcps IF5A_RABIT : 63- 69: vgidi FTgKKy-E dicps T 20: 16.8292 13( 13) D-L-x(1,2)-P-[EST]-[DEGT] Occurences: 13(13) HYPU_SULAC : 101- 107: syetf DLekPTE neivs IF51_CHICK : 111- 117: gevre DLklPEG dlgke IF51_NICPL : 114- 120: gntkd DLrlPTD dnlla IF51_YEAST : 71- 76: gkkle DLs-PST hnlev IF52_CHICK : 91- 97: gevre DLrlPEG elgr IF52_NICPL : 114- 120: gntkd DLrlPTD dnllt IF52_YEAST : 71- 76: gkkle DLs-PST hnmev IF5A_CAEEL : 116- 122: celkd DLkmPEG dlgnt IF5A_DICDI : 126- 132: gevke DLalPED digke IF5A_HUMAN : 110- 116: gevre DLrlPEG dlgke IF5A_MEDSA : 115- 121: gntkd DLklPTD dsllt IF5A_NEUCR : 78- 83: gkkle DLc-PST hnmdv IF5A_RABIT : 110- 116: gevre DLrlPEG dlgke Number of patterns evaluated by Pratt:1083 Total running time: 1 seconds