------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 10 sequences from file IF3 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 10 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename IF3.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: IF3C_EUGGR 538 IF3_BACST 171 IF3_BUCAP 178 IF3_ECOLI 180 IF3_HAEIN 172 IF3_KLEPN 180 IF3_MYCFE 212 IF3_PROVU 179 IF3_SALTY 180 IF3_SERMA 183 Pratt run started at Thu Feb 6 20:04:49 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 23.5203 10( 10) Y-x-K-x(3)-E-x(2)-K-x(0,2)-K-x(1,2)-K 2: 19.8503 10( 10) K-x-R-x(3,4)-F-x(3)-G-x(3,4)-K 3: 19.8503 10( 10) P-x(0,1)-P-x(2)-R-x(3,4)-Y-G 4: 19.3503 11( 10) R-x(3,5)-K-F-x(1,2)-E-x(5)-K 5: 19.3503 12( 10) K-x-K-x(3,5)-K-x(2,3)-K-x(4)-K 6: 19.3503 10( 10) K-x(0,2)-K-x(1,2)-K-E-x(5)-K 7: 19.3503 16( 10) K-x(3)-E-x(2)-K-x(0,2)-K-x(1,2)-K 8: 19.3503 10( 10) R-x(5)-K-F-x(1,2)-E-x(3,5)-K 9: 16.6802 10( 10) A-x(5)-D-L-V 10: 16.1802 11( 10) K-F-x(1,2)-E-x(5)-K 11: 16.1802 10( 10) G-K-x(0,1)-F-x(5)-K 12: 16.1802 11( 10) R-I-x(5)-F-x(2,3)-E 13: 16.1802 10( 10) P-x(2)-R-x(3,4)-Y-G 14: 16.1802 11( 10) A-x(4,5)-D-L-V 15: 15.6802 10( 10) F-L-x(2)-G-x(1,3)-K 16: 15.6802 10( 10) K-x(2,3)-E-K-x(1,2)-K 17: 15.6802 10( 10) L-x(3,4)-K-x(2,3)-E-x(5)-K 18: 15.6802 10( 10) K-x(0,1)-L-x(4)-K-x(2,3)-E 19: 15.6802 11( 10) K-x-K-x(4,5)-K-x(0,1)-E 20: 15.6802 19( 10) K-x(4,5)-K-x-K-x(4,5)-K Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 68.6082 10( 10) F-L-x(2)-G-x(1,3)-K-[AIV]-x-[ILMV]-[EKR]-F-[KR]-G-x-[AE]-x-[AQT]-x(3)-[IL]-G-x(2)-[TV]-[LM]-x(2)-[FILV]-x(2)-[AD]-x(2)-[DE]-x(3)-[AILV]-[ADE] B 2: 49.6223 10( 10) A-x(4)-[AILV]-D-L-V-x-[IV]-[AS]-[IPV]-[DNQ]-[APT]-[DEK]-P-[IP]-[AV]-x(2)-[IL] C 3: 46.8831 11( 10) A-x(4,5)-D-L-V-x-[IV]-[AS]-[IPV]-[DNQ]-[APT]-[DEK]-P-[IP]-[AV]-x(2)-[IL] D 4: 35.9724 11( 10) K-x-K-x(3,5)-K-x(2,3)-K-[AV]-x(3)-K-[EQ]-x(2)-[FILV]-[QRS]-x(4)-[DEQR]-x-[DT] E 5: 35.7846 10( 10) Y-[GS]-K-[FL]-x-[FY]-E-x(2)-K-x(0,2)-K-x(1,2)-K-[DEK] F 6: 31.0362 10( 10) R-[IV]-x-[DNQ]-x(2)-K-F-x(1,2)-E-x(3,5)-K-x-[AQS]-x-[EK] G 7: 28.5162 10( 10) R-x(3,5)-K-F-x(1,2)-E-x(2)-[HK]-x(2)-K-x-[AQS]-x-[EK] H 8: 28.4340 10( 10) K-[FL]-x-[FY]-E-x(2)-K-x(0,2)-K-x(1,2)-K-[DEK] I 9: 27.8934 10( 10) R-I-x-[DNV]-x(2)-[EK]-F-x(2,3)-E-x-[AQS]-x(4)-[EG] J 10: 26.2890 10( 10) P-x(0,1)-P-x(2)-R-x(3,4)-Y-G-[KR]-x(3)-[ES] K 11: 25.6193 10( 10) K-[AGL]-R-x(3,4)-F-[LV]-x(2)-G-x(3,4)-K L 12: 25.3462 10( 10) K-F-x(1,2)-E-x(2)-[HK]-x(2)-K-x-[AQS]-x-[EK] M 13: 24.1526 10( 10) L-x(3,4)-K-x(2,3)-E-x(2)-[DEK]-[EK]-x-K-[ADV] N 14: 22.6190 10( 10) P-x(2)-R-x(3,4)-Y-G-[KR]-x(3)-[ES] O 15: 21.9408 10( 10) K-x(0,2)-K-x(1,2)-K-E-x(5)-K-x(2)-[DNQ] P 16: 20.5497 10( 10) K-x-K-x(4,5)-K-x(0,1)-E-x(2)-[FLV]-x(4)-[DEGS] Q 17: 19.4088 10( 10) G-K-x(0,1)-F-x(2)-[EG]-x(2)-K R 18: 18.3421 16( 10) K-x(4,5)-K-[GQS]-K-x(4,5)-K S 19: 18.3114 10( 10) K-x(0,1)-L-x(4)-K-x(2,3)-E-x(3)-[DEK] T 20: 17.5579 10( 10) K-x(2,3)-E-K-x(1,2)-K-[ADSTV] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 68.6082 10( 10) F-L-x(2)-G-x(1,3)-K-[AIV]-x-[ILMV]-[EKR]-F-[KR]-G-x-[AE]-x-[AQT]-x(3)-[IL]-G-x(2)-[TV]-[LM]-x(2)-[FILV]-x(2)-[AD]-x(2)-[DE]-x(3)-[AILV]-[ADE] Occurences: 10(10) IF3C_EUGGR : 413- 455: kqark FLegGhriKVsMEFKGrEnQfveIGraVMkrFqnDlaDmgkAD avpkk IF3_BACST : 108- 150: rnark FLekGdkvKAtIRFKGrAiThkeIGqrVLdrLseAcaDiavVE tapkm IF3_BUCAP : 116- 158: rnlir FLedGdkvKItLRFRGrEmAhqkIGidVLnrVknDliElaiIE sfpsk IF3_ECOLI : 117- 159: rslir FLeeGdkaKItLRFRGrEmAhqqIGmeVLnrVkdDlqElavVE sfptk IF3_HAEIN : 110- 152: rslir FLedGdkaKItVRFRGrEmAhqdIGldVLerVknDlaEisvVE sapgk IF3_KLEPN : 117- 159: rslir FLedGdkaKItLRFRGrEmAhqqIGmeVLnrVkdDlvElavVE afptk IF3_MYCFE : 117- 159: rkake FLldGdriKVsLKFRGrEsArpeLGhkTLekFykAveDladIA keael IF3_PROVU : 117- 159: rnlir FLedGdkaKVtLRFRGrEmAhqqIGmeVLnrIrqDldElatVE sfpnk IF3_SALTY : 117- 159: rslir FLeeGdkaKItLRFRGrEmAhqqIGmeVLnrVkdDlqElavVE sfptk IF3_SERMA : 117- 159: rnlir FLedGdkaKItLRFRGpEmAhqqIGmeVLnpLrkDlcEdmdLA vvesf B 2: 49.6223 10( 10) A-x(4)-[AILV]-D-L-V-x-[IV]-[AS]-[IPV]-[DNQ]-[APT]-[DEK]-P-[IP]-[AV]-x(2)-[IL] Occurences: 10(10) IF3C_EUGGR : 342- 363: ealel AeaedIDLVlVSIDTDPPVakL vnysk IF3_BACST : 37- 58: ealei AarrnLDLVlVAPNAKPPVcrI mdygk IF3_BUCAP : 45- 66: relrk AeelgLDLVeISPNAEPPVcrI mdygk IF3_ECOLI : 46- 67: ealek AeeagVDLVeISPNAEPPVcrI mdygk IF3_HAEIN : 39- 60: alemm AeqaeLDLVeISPNAEPPVcrI mnygk IF3_KLEPN : 46- 67: eaiek AeeagVDLVeISPNAEPPVcrI mdygk IF3_MYCFE : 47- 68: eaiem AkeqrLDLVlISVQPKPIAriL dygkf IF3_PROVU : 46- 67: ealek AeeagADLVeISPNAEPPVcrI mdygk IF3_SALTY : 46- 67: ealek AeeagVDLVeISPNAEPPVcrI mdygk IF3_SERMA : 46- 67: ealek AeeagVDLVeISPNAEPPVcrI mdygk C 3: 46.8831 11( 10) A-x(4,5)-D-L-V-x-[IV]-[AS]-[IPV]-[DNQ]-[APT]-[DEK]-P-[IP]-[AV]-x(2)-[IL] Occurences: 11(10) IF3C_EUGGR : 342- 363: ealel AeaediDLVlVSIDTDPPVakL vnysk IF3_BACST : 37- 58: ealei AarrnlDLVlVAPNAKPPVcrI mdygk IF3_BACST : 38- 58: aleia Arrnl-DLVlVAPNAKPPVcrI mdygk IF3_BUCAP : 45- 66: relrk AeelglDLVeISPNAEPPVcrI mdygk IF3_ECOLI : 46- 67: ealek AeeagvDLVeISPNAEPPVcrI mdygk IF3_HAEIN : 39- 60: alemm AeqaelDLVeISPNAEPPVcrI mnygk IF3_KLEPN : 46- 67: eaiek AeeagvDLVeISPNAEPPVcrI mdygk IF3_MYCFE : 47- 68: eaiem AkeqrlDLVlISVQPKPIAriL dygkf IF3_PROVU : 46- 67: ealek AeeagaDLVeISPNAEPPVcrI mdygk IF3_SALTY : 46- 67: ealek AeeagvDLVeISPNAEPPVcrI mdygk IF3_SERMA : 46- 67: ealek AeeagvDLVeISPNAEPPVcrI mdygk D 4: 35.9724 11( 10) K-x-K-x(3,5)-K-x(2,3)-K-[AV]-x(3)-K-[EQ]-x(2)-[FILV]-[QRS]-x(4)-[DEQR]-x-[DT] Occurences: 11(10) IF3C_EUGGR : 375- 402: kyese KkKkdsh-Kkg-KVkevKElkVShkigQhD ydvrv IF3C_EUGGR : 376- 402: yesek KkKdsh--Kkg-KVkevKElkVShkigQhD ydvrv IF3_BACST : 71- 97: feqqk KeKear--Kkq-KVinvKEvrLSptieEhD fntkl IF3_BUCAP : 76- 105: kflye KsKsskeqKkkqKViqvKEikFRpstdEgD yqvkl IF3_ECOLI : 77- 106: kflye KsKsskeqKkkqKViqvKEikFRpgtdEgD yqvkl IF3_HAEIN : 70- 99: kflye KsKtakeqKkkqKVvqvKEikFRpgtdEgD yqvkl IF3_KLEPN : 77- 106: kflye KsKsskeqKkkqKViqvKEikFRpgtdEgD yqvkl IF3_MYCFE : 72- 99: ildyg KfKyerk-Kkq-KAakeKQtvIQnrqiRlT plige IF3_MYCFE : 72- 99: ildyg KfKyer--KkkqKAakeKQtvIQnrqiRlT plige IF3_PROVU : 77- 106: kflye KsKtlkeqKkeqKViqvKEvkFRpgtdEgD yqvkl IF3_SALTY : 77- 106: kflye KsKsskeqKkkqKViqvKEikFRpgtdEgD yqvkl IF3_SERMA : 77- 106: kflye KsKstkeqKeeqKViqvKEikFRpgtdDgD yqvkl E 5: 35.7846 10( 10) Y-[GS]-K-[FL]-x-[FY]-E-x(2)-K-x(0,2)-K-x(1,2)-K-[DEK] Occurences: 10(10) IF3C_EUGGR : 366- 379: aklvn YSKLkYEseK--Kk-KD shkkg IF3_BACST : 61- 74: crimd YGKFrFEqqK--Ke-KE arkkq IF3_BUCAP : 69- 85: crimd YGKFlYEksKssKeqKK kqkvi IF3_ECOLI : 70- 86: crimd YGKFlYEksKssKeqKK kqkvi IF3_HAEIN : 63- 79: crimn YGKFlYEksKtaKeqKK kqkvv IF3_KLEPN : 70- 86: crimd YGKFlYEksKssKeqKK kqkvi IF3_MYCFE : 70- 86: arild YGKFkYErkKkqKaaKE kqtvi IF3_PROVU : 70- 86: crimd YGKFlYEksKtlKeqKK eqkvi IF3_SALTY : 70- 86: crimd YGKFlYEksKssKeqKK kqkvi IF3_SERMA : 70- 86: crimd YGKFlYEksKstKeqKE eqkvi F 6: 31.0362 10( 10) R-[IV]-x-[DNQ]-x(2)-K-F-x(1,2)-E-x(3,5)-K-x-[AQS]-x-[EK] Occurences: 10(10) IF3C_EUGGR : 406- 425: hdydv RVkQarKFl-EgghriKvSmE fkgre IF3_BACST : 57- 77: kppvc RImDygKFrfEqqkkeKeArK kqkvi IF3_BUCAP : 65- 85: eppvc RImDygKFlyEkskssKeQkK kqkvi IF3_ECOLI : 66- 86: eppvc RImDygKFlyEkskssKeQkK kqkvi IF3_HAEIN : 59- 79: eppvc RImNygKFlyEksktaKeQkK kqkvv IF3_KLEPN : 66- 86: eppvc RImDygKFlyEkskssKeQkK kqkvi IF3_MYCFE : 66- 86: pkpia RIlDygKFkyErkkkqKaAkE kqtvi IF3_PROVU : 66- 86: eppvc RImDygKFlyEksktlKeQkK eqkvi IF3_SALTY : 66- 86: eppvc RImDygKFlyEkskssKeQkK kqkvi IF3_SERMA : 66- 86: eppvc RImDygKFlyEkskstKeQkE eqkvi G 7: 28.5162 10( 10) R-x(3,5)-K-F-x(1,2)-E-x(2)-[HK]-x(2)-K-x-[AQS]-x-[EK] Occurences: 10(10) IF3C_EUGGR : 406- 425: hdydv RvkqarKFl-EggHriKvSmE fkgre IF3_BACST : 57- 77: kppvc RimdygKFrfEqqKkeKeArK kqkvi IF3_BUCAP : 65- 85: eppvc RimdygKFlyEksKssKeQkK kqkvi IF3_ECOLI : 66- 86: eppvc RimdygKFlyEksKssKeQkK kqkvi IF3_HAEIN : 59- 79: eppvc RimnygKFlyEksKtaKeQkK kqkvv IF3_KLEPN : 66- 86: eppvc RimdygKFlyEksKssKeQkK kqkvi IF3_MYCFE : 66- 86: pkpia RildygKFkyErkKkqKaAkE kqtvi IF3_PROVU : 66- 86: eppvc RimdygKFlyEksKtlKeQkK eqkvi IF3_SALTY : 66- 86: eppvc RimdygKFlyEksKssKeQkK kqkvi IF3_SERMA : 66- 86: eppvc RimdygKFlyEksKstKeQkE eqkvi H 8: 28.4340 10( 10) K-[FL]-x-[FY]-E-x(2)-K-x(0,2)-K-x(1,2)-K-[DEK] Occurences: 10(10) IF3C_EUGGR : 368- 379: lvnys KLkYEseK--Kk-KD shkkg IF3_BACST : 63- 74: imdyg KFrFEqqK--Ke-KE arkkq IF3_BUCAP : 71- 85: imdyg KFlYEksKssKeqKK kqkvi IF3_ECOLI : 72- 86: imdyg KFlYEksKssKeqKK kqkvi IF3_HAEIN : 65- 79: imnyg KFlYEksKtaKeqKK kqkvv IF3_KLEPN : 72- 86: imdyg KFlYEksKssKeqKK kqkvi IF3_MYCFE : 72- 86: ildyg KFkYErkKkqKaaKE kqtvi IF3_PROVU : 72- 86: imdyg KFlYEksKtlKeqKK eqkvi IF3_SALTY : 72- 86: imdyg KFlYEksKssKeqKK kqkvi IF3_SERMA : 72- 86: imdyg KFlYEksKstKeqKE eqkvi I 9: 27.8934 10( 10) R-I-x-[DNV]-x(2)-[EK]-F-x(2,3)-E-x-[AQS]-x(4)-[EG] Occurences: 10(10) IF3C_EUGGR : 419- 437: leggh RIkVsmEFkgrEnQfveiG ravmk IF3_BACST : 57- 74: kppvc RImDygKFrf-EqQkkekE arkkq IF3_BUCAP : 65- 82: eppvc RImDygKFly-EkSksskE qkkkq IF3_ECOLI : 66- 83: eppvc RImDygKFly-EkSksskE qkkkq IF3_HAEIN : 59- 76: eppvc RImNygKFly-EkSktakE qkkkq IF3_KLEPN : 66- 83: eppvc RImDygKFly-EkSksskE qkkkq IF3_MYCFE : 123- 141: lldgd RIkVslKFrgrEsArpelG hktle IF3_PROVU : 66- 83: eppvc RImDygKFly-EkSktlkE qkkeq IF3_SALTY : 66- 83: eppvc RImDygKFly-EkSksskE qkkkq IF3_SERMA : 66- 83: eppvc RImDygKFly-EkSkstkE qkeeq J 10: 26.2890 10( 10) P-x(0,1)-P-x(2)-R-x(3,4)-Y-G-[KR]-x(3)-[ES] Occurences: 10(10) IF3C_EUGGR : 184- 199: nifqa P-PslRtdstYGRgprS tsftd IF3_BACST : 53- 67: apnak P-PvcRimd-YGKfrfE qqkke IF3_BUCAP : 61- 75: spnae P-PvcRimd-YGKflyE kskss IF3_ECOLI : 62- 76: spnae P-PvcRimd-YGKflyE kskss IF3_HAEIN : 55- 69: spnae P-PvcRimn-YGKflyE kskta IF3_KLEPN : 62- 76: spnae P-PvcRimd-YGKflyE kskss IF3_MYCFE : 61- 76: lisvq PkPiaRild-YGKfkyE rkkkq IF3_PROVU : 62- 76: spnae P-PvcRimd-YGKflyE ksktl IF3_SALTY : 62- 76: spnae P-PvcRimd-YGKflyE kskss IF3_SERMA : 62- 76: spnae P-PvcRimd-YGKflyE kskst K 11: 25.6193 10( 10) K-[AGL]-R-x(3,4)-F-[LV]-x(2)-G-x(3,4)-K Occurences: 10(10) IF3C_EUGGR : 427- 442: vsmef KGRenq-FVeiGravmK rfqnd IF3_BACST : 101- 116: hdfnt KLRnarkFLekGdkv-K atirf IF3_BUCAP : 109- 124: gdyqv KLRnlirFLedGdkv-K itlrf IF3_ECOLI : 110- 125: gdyqv KLRslirFLeeGdka-K itlrf IF3_HAEIN : 103- 118: gdyqv KLRslirFLedGdka-K itvrf IF3_KLEPN : 110- 125: gdyqv KLRslirFLedGdka-K itlrf IF3_MYCFE : 110- 125: hdlnv KARkakeFLldGdri-K vslkf IF3_PROVU : 110- 125: gdyqv KLRnlirFLedGdka-K vtlrf IF3_SALTY : 110- 125: gdyqv KLRslirFLeeGdka-K itlrf IF3_SERMA : 110- 125: gdyqv KLRnlirFLedGdka-K itlrf L 12: 25.3462 10( 10) K-F-x(1,2)-E-x(2)-[HK]-x(2)-K-x-[AQS]-x-[EK] Occurences: 10(10) IF3C_EUGGR : 412- 425: vkqar KFl-EggHriKvSmE fkgre IF3_BACST : 63- 77: imdyg KFrfEqqKkeKeArK kqkvi IF3_BUCAP : 71- 85: imdyg KFlyEksKssKeQkK kqkvi IF3_ECOLI : 72- 86: imdyg KFlyEksKssKeQkK kqkvi IF3_HAEIN : 65- 79: imnyg KFlyEksKtaKeQkK kqkvv IF3_KLEPN : 72- 86: imdyg KFlyEksKssKeQkK kqkvi IF3_MYCFE : 72- 86: ildyg KFkyErkKkqKaAkE kqtvi IF3_PROVU : 72- 86: imdyg KFlyEksKtlKeQkK eqkvi IF3_SALTY : 72- 86: imdyg KFlyEksKssKeQkK kqkvi IF3_SERMA : 72- 86: imdyg KFlyEksKstKeQkE eqkvi M 13: 24.1526 10( 10) L-x(3,4)-K-x(2,3)-E-x(2)-[DEK]-[EK]-x-K-[ADV] Occurences: 10(10) IF3C_EUGGR : 363- 379: ppvak LvnysKlkyEseKKkKD shkkg IF3_BACST : 102- 117: dfntk LrnarKfl-EkgDKvKA tirfk IF3_BUCAP : 73- 89: dygkf LyeksKsskEqkKKqKV iqvke IF3_ECOLI : 74- 90: dygkf LyeksKsskEqkKKqKV iqvke IF3_HAEIN : 67- 83: nygkf LyeksKtakEqkKKqKV vqvke IF3_KLEPN : 74- 90: dygkf LyeksKsskEqkKKqKV iqvke IF3_MYCFE : 68- 83: piari Ldyg-KfkyErkKKqKA akekq IF3_PROVU : 74- 90: dygkf LyeksKtlkEqkKEqKV iqvke IF3_SALTY : 74- 90: dygkf LyeksKsskEqkKKqKV iqvke IF3_SERMA : 74- 90: dygkf LyeksKstkEqkEEqKV iqvke N 14: 22.6190 10( 10) P-x(2)-R-x(3,4)-Y-G-[KR]-x(3)-[ES] Occurences: 10(10) IF3C_EUGGR : 185- 199: ifqap PslRtdstYGRgprS tsftd IF3_BACST : 54- 67: pnakp PvcRimd-YGKfrfE qqkke IF3_BUCAP : 62- 75: pnaep PvcRimd-YGKflyE kskss IF3_ECOLI : 63- 76: pnaep PvcRimd-YGKflyE kskss IF3_HAEIN : 56- 69: pnaep PvcRimn-YGKflyE kskta IF3_KLEPN : 63- 76: pnaep PvcRimd-YGKflyE kskss IF3_MYCFE : 63- 76: svqpk PiaRild-YGKfkyE rkkkq IF3_PROVU : 63- 76: pnaep PvcRimd-YGKflyE ksktl IF3_SALTY : 63- 76: pnaep PvcRimd-YGKflyE kskss IF3_SERMA : 63- 76: pnaep PvcRimd-YGKflyE kskst O 15: 21.9408 10( 10) K-x(0,2)-K-x(1,2)-K-E-x(5)-K-x(2)-[DNQ] Occurences: 10(10) IF3C_EUGGR : 385- 400: shkkg Kv-KevKElkvshKigQ hdydv IF3_BACST : 70- 83: rfeqq K--Ke-KEarkkqKviN vkevr IF3_BUCAP : 76- 91: kflye Ks-KssKEqkkkqKviQ vkeik IF3_ECOLI : 77- 92: kflye Ks-KssKEqkkkqKviQ vkeik IF3_HAEIN : 70- 85: kflye Ks-KtaKEqkkkqKvvQ vkeik IF3_KLEPN : 77- 92: kflye Ks-KssKEqkkkqKviQ vkeik IF3_MYCFE : 180- 196: qpnki KvnKyrKEhnlvdKnsD sqdks IF3_PROVU : 77- 92: kflye Ks-KtlKEqkkeqKviQ vkevk IF3_SALTY : 77- 92: kflye Ks-KssKEqkkkqKviQ vkeik IF3_SERMA : 77- 92: kflye Ks-KstKEqkeeqKviQ vkeik P 16: 20.5497 10( 10) K-x-K-x(4,5)-K-x(0,1)-E-x(2)-[FLV]-x(4)-[DEGS] Occurences: 10(10) IF3C_EUGGR : 383- 399: kdshk KgKvkev-K-ElkVshkiG qhdyd IF3_BACST : 78- 94: keark KqKvinv-K-EvrLsptiE ehdfn IF3_BUCAP : 86- 102: keqkk KqKviqv-K-EikFrpstD egdyq IF3_ECOLI : 87- 103: keqkk KqKviqv-K-EikFrpgtD egdyq IF3_HAEIN : 80- 96: keqkk KqKvvqv-K-EikFrpgtD egdyq IF3_KLEPN : 87- 103: keqkk KqKviqv-K-EikFrpgtD egdyq IF3_MYCFE : 178- 195: ylqpn KiKvnkyrK-EhnLvdknS dsqdk IF3_PROVU : 77- 95: kflye KsKtlkeqKkEqkViqvkE vkfrp IF3_SALTY : 87- 103: keqkk KqKviqv-K-EikFrpgtD egdyq IF3_SERMA : 77- 95: kflye KsKstkeqKeEqkViqvkE ikfrp Q 17: 19.4088 10( 10) G-K-x(0,1)-F-x(2)-[EG]-x(2)-K Occurences: 10(10) IF3C_EUGGR : 264- 273: lglgk GKgFgkGfgK grgfp IF3_BACST : 62- 70: rimdy GK-FrfEqqK kekea IF3_BUCAP : 70- 78: rimdy GK-FlyEksK sskeq IF3_ECOLI : 71- 79: rimdy GK-FlyEksK sskeq IF3_HAEIN : 64- 72: rimny GK-FlyEksK takeq IF3_KLEPN : 71- 79: rimdy GK-FlyEksK sskeq IF3_MYCFE : 71- 79: rildy GK-FkyErkK kqkaa IF3_PROVU : 71- 79: rimdy GK-FlyEksK tlkeq IF3_SALTY : 71- 79: rimdy GK-FlyEksK sskeq IF3_SERMA : 71- 79: rimdy GK-FlyEksK stkeq R 18: 18.3421 16( 10) K-x(4,5)-K-[GQS]-K-x(4,5)-K Occurences: 16(10) IF3C_EUGGR : 377- 390: esekk KkdshkKGKvkev-K elkvs IF3C_EUGGR : 378- 390: sekkk Kdshk-KGKvkev-K elkvs IF3_BACST : 73- 85: qqkke Keark-KQKvinv-K evrls IF3_BUCAP : 71- 84: imdyg Kflye-KSKsskeqK kkqkv IF3_BUCAP : 81- 93: kskss Keqkk-KQKviqv-K eikfr IF3_ECOLI : 72- 85: imdyg Kflye-KSKsskeqK kkqkv IF3_ECOLI : 82- 94: kskss Keqkk-KQKviqv-K eikfr IF3_HAEIN : 65- 78: imnyg Kflye-KSKtakeqK kkqkv IF3_HAEIN : 75- 87: kskta Keqkk-KQKvvqv-K eikfr IF3_KLEPN : 72- 85: imdyg Kflye-KSKsskeqK kkqkv IF3_KLEPN : 82- 94: kskss Keqkk-KQKviqv-K eikfr IF3_MYCFE : 74- 87: dygkf KyerkkKQKaake-K qtviq IF3_PROVU : 72- 85: imdyg Kflye-KSKtlkeqK keqkv IF3_SALTY : 72- 85: imdyg Kflye-KSKsskeqK kkqkv IF3_SALTY : 82- 94: kskss Keqkk-KQKviqv-K eikfr IF3_SERMA : 72- 85: imdyg Kflye-KSKstkeqK eeqkv S 19: 18.3114 10( 10) K-x(0,1)-L-x(4)-K-x(2,3)-E-x(3)-[DEK] Occurences: 10(10) IF3C_EUGGR : 362- 376: dppva K-LvnysKlkyEsekK kkdsh IF3_BACST : 101- 114: hdfnt K-LrnarKfl-EkgdK vkati IF3_BUCAP : 71- 86: imdyg KfLyeksKsskEqkkK qkviq IF3_ECOLI : 72- 87: imdyg KfLyeksKsskEqkkK qkviq IF3_HAEIN : 65- 80: imnyg KfLyeksKtakEqkkK qkvvq IF3_KLEPN : 72- 87: imdyg KfLyeksKsskEqkkK qkviq IF3_MYCFE : 143- 157: pelgh KtLekfyKav-EdlaD iakea IF3_PROVU : 72- 87: imdyg KfLyeksKtlkEqkkE qkviq IF3_SALTY : 72- 87: imdyg KfLyeksKsskEqkkK qkviq IF3_SERMA : 72- 87: imdyg KfLyeksKstkEqkeE qkviq T 20: 17.5579 10( 10) K-x(2,3)-E-K-x(1,2)-K-[ADSTV] Occurences: 10(10) IF3C_EUGGR : 370- 379: nyskl KyesEKkkKD shkkg IF3_BACST : 107- 115: lrnar Kfl-EKgdKV katir IF3_BUCAP : 71- 79: imdyg KflyEKs-KS skeqk IF3_ECOLI : 72- 80: imdyg KflyEKs-KS skeqk IF3_HAEIN : 65- 73: imnyg KflyEKs-KT akeqk IF3_KLEPN : 72- 80: imdyg KflyEKs-KS skeqk IF3_MYCFE : 143- 151: pelgh Ktl-EKfyKA vedla IF3_PROVU : 72- 80: imdyg KflyEKs-KT lkeqk IF3_SALTY : 72- 80: imdyg KflyEKs-KS skeqk IF3_SERMA : 72- 80: imdyg KflyEKs-KS tkeqk Number of patterns evaluated by Pratt:3168 Total running time: 2 seconds