------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 4 sequences from file IDO_2 PATTERN CONSERVATION: CM: min Nr of Seqs to Match 4 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename IDO_2.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: I23O_HUMAN 403 I23O_MOUSE 407 MYG_SULDI 377 YJ48_YEAST 453 Pratt run started at Thu Feb 6 20:04:40 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 49.0406 4( 4) G-G-S-x(0,1)-A-x(0,1)-Q-S-S-x(2)-Q-x(2)-D-x-L-L-G 2: 41.7005 4( 4) L-x(2)-A-Y-x(2)-C-x(3)-L-x(3)-R-x(2)-H-x(3)-V-x(2)-Y-I 3: 41.2005 4( 4) L-x(1,2)-A-Y-x(2)-C-x(3)-L-x(3)-R-x(2)-H-x(3)-V-x(2)-Y-I 4: 41.2005 5( 4) G-x(2)-A-x(0,1)-Q-S-S-x(2)-Q-x(2)-D-x-L-L-G 5: 40.7005 4( 4) S-x(0,1)-A-x(0,1)-Q-S-S-x(2)-Q-x(2)-D-x-L-L-G 6: 40.7005 7( 4) G-x(1,2)-A-x(0,1)-Q-S-S-x(2)-Q-x(2)-D-x-L-L-G 7: 37.5305 4( 4) A-Y-x(2)-C-x(3)-L-x(3)-R-x(2)-H-x(3)-V-x(2)-Y-I 8: 37.0305 4( 4) A-Y-x(1,2)-C-x(3)-L-x(3)-R-x(2)-H-x(3)-V-x(2)-Y-I 9: 37.0305 5( 4) A-x(0,1)-Q-S-S-x(2)-Q-x(2)-D-x-L-L-G 10: 36.0305 4( 4) L-x(2)-A-Y-x(2)-C-x(3)-L-x(3)-R-x(2)-H-x(0,2)-I-x(0,1)-V 11: 33.3604 4( 4) Q-S-S-x(2)-Q-x(2)-D-x-L-L-G 12: 31.8604 4( 4) A-Y-x(2)-C-x(3)-L-x(3)-R-x(2)-H-x(0,2)-I-x(0,1)-V 13: 29.1904 4( 4) S-S-x(2)-Q-x(2)-D-x-L-L-G 14: 28.1904 4( 4) L-x(5)-Y-M-x(0,1)-P-x(1,2)-H-x(3)-L-x(2)-L 15: 27.6904 4( 4) Y-x(2)-C-x(3)-L-x(3)-R-x(2)-H-x(0,2)-I-x(0,1)-V 16: 25.0203 4( 4) L-x(3)-R-x(2)-H-x(3)-V-x(2)-Y-I 17: 25.0203 4( 4) S-x(2)-Q-x(2)-D-x-L-L-G 18: 24.5203 4( 4) L-x(3)-R-x(1,2)-H-x(3)-V-x(2)-Y-I 19: 24.5203 4( 4) L-x(2,3)-R-x(2)-H-x(3)-V-x(2)-Y-I 20: 24.0203 4( 4) L-x(2,3)-R-x(1,2)-H-x(3)-V-x(2)-Y-I Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 77.0445 4( 4) G-G-S-x(0,1)-A-x(0,1)-Q-S-S-[AILV]-[FIM]-Q-x-[FL]-D-x-L-L-G-[IV]-x(2)-[EST]-[AP]-[DGN]-x-[AEGQ]-x(3)-[DEQ]-x(2)-[QS] B 2: 75.6063 4( 4) G-[GS]-[NS]-A-x(0,1)-Q-S-S-[AILV]-[FIM]-Q-x-[FL]-D-x-L-L-G-[IV]-x(2)-[EST]-[AP]-[DGN]-x-[AEGQ]-x(3)-[DEQ]-x(2)-[QS] C 3: 74.2131 4( 4) L-x(2)-A-Y-[DGNS]-x-C-[IV]-x(2)-L-x(3)-R-x(2)-H-[IL]-[AQ]-[IV]-V-[DT]-x-Y-I-[ILMV]-x-[AP]-[AS]-x(3)-[PQS]-x(2)-[GNS] D 4: 73.7131 4( 4) L-x(1,2)-A-Y-[DGNS]-x-C-[IV]-x(2)-L-x(3)-R-x(2)-H-[IL]-[AQ]-[IV]-V-[DT]-x-Y-I-[ILMV]-x-[AP]-[AS]-x(3)-[PQS]-x(2)-[GNS] E 5: 68.7044 4( 4) S-x(0,1)-A-x(0,1)-Q-S-S-[AILV]-[FIM]-Q-x-[FL]-D-x-L-L-G-[IV]-x(2)-[EST]-[AP]-[DGN]-x-[AEGQ]-x(3)-[DEQ]-x(2)-[QS] F 6: 68.7044 7( 4) G-x(1,2)-A-x(0,1)-Q-S-S-[AILV]-[FIM]-Q-x-[FL]-D-x-L-L-G-[IV]-x(2)-[EST]-[AP]-[DGN]-x-[AEGQ]-x(3)-[DEQ]-x(2)-[QS] G 7: 67.8038 4( 4) A-Y-x(2)-C-[IV]-x(2)-L-x(3)-R-x(2)-H-[IL]-[AQ]-[IV]-V-[DT]-x-Y-I-[ILMV]-x-[AP]-[AS]-x(3)-[PQS]-x(2)-[GNS] H 8: 67.3038 4( 4) A-Y-x(1,2)-C-[IV]-x(2)-L-x(3)-R-x(2)-H-[IL]-[AQ]-[IV]-V-[DT]-x-Y-I-[ILMV]-x-[AP]-[AS]-x(3)-[PQS]-x(2)-[GNS] I 9: 65.0344 5( 4) A-x(0,1)-Q-S-S-[AILV]-[FIM]-Q-x-[FL]-D-x-L-L-G-[IV]-x(2)-[EST]-[AP]-[DGN]-x-[AEGQ]-x(3)-[DEQ]-x(2)-[QS] J 10: 61.3643 4( 4) Q-S-S-[AILV]-[FIM]-Q-x-[FL]-D-x-L-L-G-[IV]-x(2)-[EST]-[AP]-[DGN]-x-[AEGQ]-x(3)-[DEQ]-x(2)-[QS] K 11: 59.7265 4( 4) L-[DQ]-[DE]-[IM]-x(2)-Y-M-x(0,1)-P-x(1,2)-H-[KR]-[ENQ]-[FL]-L-x(2)-L-[ET]-x(2)-[CP]-x(3)-[EP]-x-[IV] L 12: 59.1401 4( 4) L-x-[EK]-A-Y-[DGNS]-x-C-[IV]-x(2)-L-x(3)-R-x(2)-H-x(0,2)-I-x(0,1)-V-[DTV]-x(3)-[ILM]-x-[PT]-[AS]-x(3)-[DPQ] M 13: 57.1943 4( 4) S-S-[AILV]-[FIM]-Q-x-[FL]-D-x-L-L-G-[IV]-x(2)-[EST]-[AP]-[DGN]-x-[AEGQ]-x(3)-[DEQ]-x(2)-[QS] N 14: 53.0242 4( 4) S-[AILV]-[FIM]-Q-x-[FL]-D-x-L-L-G-[IV]-x(2)-[EST]-[AP]-[DGN]-x-[AEGQ]-x(3)-[DEQ]-x(2)-[QS] O 15: 52.0688 4( 4) L-x(3)-R-x(2)-H-[IL]-[AQ]-[IV]-V-[DT]-x-Y-I-[ILMV]-x-[AP]-[AS]-x(3)-[PQS]-x(2)-[GNS] P 16: 51.7587 4( 4) A-Y-[DGNS]-x-C-[IV]-x(2)-L-x(3)-R-x(2)-H-x(0,2)-I-x(0,1)-V-[DTV]-x(3)-[ILM]-x-[PT]-[AS]-x(3)-[DPQ] Q 17: 51.5688 4( 4) L-x(3)-R-x(1,2)-H-[IL]-[AQ]-[IV]-V-[DT]-x-Y-I-[ILMV]-x-[AP]-[AS]-x(3)-[PQS]-x(2)-[GNS] R 18: 51.5688 4( 4) L-x(2,3)-R-x(2)-H-[IL]-[AQ]-[IV]-V-[DT]-x-Y-I-[ILMV]-x-[AP]-[AS]-x(3)-[PQS]-x(2)-[GNS] S 19: 51.0688 4( 4) L-x(2,3)-R-x(1,2)-H-[IL]-[AQ]-[IV]-V-[DT]-x-Y-I-[ILMV]-x-[AP]-[AS]-x(3)-[PQS]-x(2)-[GNS] T 20: 47.5886 4( 4) Y-[DGNS]-x-C-[IV]-x(2)-L-x(3)-R-x(2)-H-x(0,2)-I-x(0,1)-V-[DTV]-x(3)-[ILM]-x-[PT]-[AS]-x(3)-[DPQ] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 77.0445 4( 4) G-G-S-x(0,1)-A-x(0,1)-Q-S-S-[AILV]-[FIM]-Q-x-[FL]-D-x-L-L-G-[IV]-x(2)-[EST]-[AP]-[DGN]-x-[AEGQ]-x(3)-[DEQ]-x(2)-[QS] Occurences: 4(4) I23O_HUMAN : 261- 293: pkefa GGS-AgQSSVFQcFDvLLGIqqTAGgGhaaQflQ dmrry I23O_MOUSE : 265- 297: pkmfs GGS-AgQSSIFQsLDvLLGIkhEAGkEspaEflQ emrey MYG_SULDI : 248- 280: pvtmi GGSaA-QSSAMQlLDnLLGVthSPDkQaflDeiS nymip MYG_SULDI : 248- 280: pvtmi GGS-AaQSSAMQlLDnLLGVthSPDkQaflDeiS nymip YJ48_YEAST : 283- 315: yrifs GGSnA-QSSLIQtLDiLLGVkhTANaAhssQgdS kinyl B 2: 75.6063 4( 4) G-[GS]-[NS]-A-x(0,1)-Q-S-S-[AILV]-[FIM]-Q-x-[FL]-D-x-L-L-G-[IV]-x(2)-[EST]-[AP]-[DGN]-x-[AEGQ]-x(3)-[DEQ]-x(2)-[QS] Occurences: 4(4) I23O_HUMAN : 261- 293: pkefa GGSAgQSSVFQcFDvLLGIqqTAGgGhaaQflQ dmrry I23O_MOUSE : 265- 297: pkmfs GGSAgQSSIFQsLDvLLGIkhEAGkEspaEflQ emrey MYG_SULDI : 248- 280: pvtmi GGSAaQSSAMQlLDnLLGVthSPDkQaflDeiS nymip YJ48_YEAST : 284- 315: rifsg GSNA-QSSLIQtLDiLLGVkhTANaAhssQgdS kinyl C 3: 74.2131 4( 4) L-x(2)-A-Y-[DGNS]-x-C-[IV]-x(2)-L-x(3)-R-x(2)-H-[IL]-[AQ]-[IV]-V-[DT]-x-Y-I-[ILMV]-x-[AP]-[AS]-x(3)-[PQS]-x(2)-[GNS] Occurences: 4(4) I23O_HUMAN : 328- 365: kgdag LreAYDaCVkaLvslRsyHLQIVTkYILiPAsqqPkeN ktsed I23O_MOUSE : 332- 369: rhned LtkAYNeCVngLvsvRkfHLAIVDtYIMkPSkkkPtdG dksee MYG_SULDI : 313- 350: akdan LskAYSgCVaaLtqyRtyHIQVVTkYIVtASksdSpkS laykd YJ48_YEAST : 357- 394: asnra LqeAYGrCIsmLkifRdnHIQIVTkYIIlPSnskQhgS nkpnv D 4: 73.7131 4( 4) L-x(1,2)-A-Y-[DGNS]-x-C-[IV]-x(2)-L-x(3)-R-x(2)-H-[IL]-[AQ]-[IV]-V-[DT]-x-Y-I-[ILMV]-x-[AP]-[AS]-x(3)-[PQS]-x(2)-[GNS] Occurences: 4(4) I23O_HUMAN : 328- 365: kgdag LreAYDaCVkaLvslRsyHLQIVTkYILiPAsqqPkeN ktsed I23O_MOUSE : 332- 369: rhned LtkAYNeCVngLvsvRkfHLAIVDtYIMkPSkkkPtdG dksee MYG_SULDI : 313- 350: akdan LskAYSgCVaaLtqyRtyHIQVVTkYIVtASksdSpkS laykd YJ48_YEAST : 357- 394: asnra LqeAYGrCIsmLkifRdnHIQIVTkYIIlPSnskQhgS nkpnv E 5: 68.7044 4( 4) S-x(0,1)-A-x(0,1)-Q-S-S-[AILV]-[FIM]-Q-x-[FL]-D-x-L-L-G-[IV]-x(2)-[EST]-[AP]-[DGN]-x-[AEGQ]-x(3)-[DEQ]-x(2)-[QS] Occurences: 4(4) I23O_HUMAN : 263- 293: efagg S-AgQSSVFQcFDvLLGIqqTAGgGhaaQflQ dmrry I23O_MOUSE : 267- 297: mfsgg S-AgQSSIFQsLDvLLGIkhEAGkEspaEflQ emrey MYG_SULDI : 250- 280: tmigg SaA-QSSAMQlLDnLLGVthSPDkQaflDeiS nymip MYG_SULDI : 250- 280: tmigg S-AaQSSAMQlLDnLLGVthSPDkQaflDeiS nymip YJ48_YEAST : 285- 315: ifsgg SnA-QSSLIQtLDiLLGVkhTANaAhssQgdS kinyl F 6: 68.7044 7( 4) G-x(1,2)-A-x(0,1)-Q-S-S-[AILV]-[FIM]-Q-x-[FL]-D-x-L-L-G-[IV]-x(2)-[EST]-[AP]-[DGN]-x-[AEGQ]-x(3)-[DEQ]-x(2)-[QS] Occurences: 7(4) I23O_HUMAN : 261- 293: pkefa GgsAgQSSVFQcFDvLLGIqqTAGgGhaaQflQ dmrry I23O_HUMAN : 262- 293: kefag Gs-AgQSSVFQcFDvLLGIqqTAGgGhaaQflQ dmrry I23O_MOUSE : 265- 297: pkmfs GgsAgQSSIFQsLDvLLGIkhEAGkEspaEflQ emrey I23O_MOUSE : 266- 297: kmfsg Gs-AgQSSIFQsLDvLLGIkhEAGkEspaEflQ emrey MYG_SULDI : 248- 280: pvtmi GgsAaQSSAMQlLDnLLGVthSPDkQaflDeiS nymip MYG_SULDI : 249- 280: vtmig GsaA-QSSAMQlLDnLLGVthSPDkQaflDeiS nymip MYG_SULDI : 249- 280: vtmig Gs-AaQSSAMQlLDnLLGVthSPDkQaflDeiS nymip YJ48_YEAST : 284- 315: rifsg GsnA-QSSLIQtLDiLLGVkhTANaAhssQgdS kinyl G 7: 67.8038 4( 4) A-Y-x(2)-C-[IV]-x(2)-L-x(3)-R-x(2)-H-[IL]-[AQ]-[IV]-V-[DT]-x-Y-I-[ILMV]-x-[AP]-[AS]-x(3)-[PQS]-x(2)-[GNS] Occurences: 4(4) I23O_HUMAN : 331- 365: aglre AYdaCVkaLvslRsyHLQIVTkYILiPAsqqPkeN ktsed I23O_MOUSE : 335- 369: edltk AYneCVngLvsvRkfHLAIVDtYIMkPSkkkPtdG dksee MYG_SULDI : 316- 350: anlsk AYsgCVaaLtqyRtyHIQVVTkYIVtASksdSpkS laykd YJ48_YEAST : 360- 394: ralqe AYgrCIsmLkifRdnHIQIVTkYIIlPSnskQhgS nkpnv H 8: 67.3038 4( 4) A-Y-x(1,2)-C-[IV]-x(2)-L-x(3)-R-x(2)-H-[IL]-[AQ]-[IV]-V-[DT]-x-Y-I-[ILMV]-x-[AP]-[AS]-x(3)-[PQS]-x(2)-[GNS] Occurences: 4(4) I23O_HUMAN : 331- 365: aglre AYdaCVkaLvslRsyHLQIVTkYILiPAsqqPkeN ktsed I23O_MOUSE : 335- 369: edltk AYneCVngLvsvRkfHLAIVDtYIMkPSkkkPtdG dksee MYG_SULDI : 316- 350: anlsk AYsgCVaaLtqyRtyHIQVVTkYIVtASksdSpkS laykd YJ48_YEAST : 360- 394: ralqe AYgrCIsmLkifRdnHIQIVTkYIIlPSnskQhgS nkpnv I 9: 65.0344 5( 4) A-x(0,1)-Q-S-S-[AILV]-[FIM]-Q-x-[FL]-D-x-L-L-G-[IV]-x(2)-[EST]-[AP]-[DGN]-x-[AEGQ]-x(3)-[DEQ]-x(2)-[QS] Occurences: 5(4) I23O_HUMAN : 264- 293: faggs AgQSSVFQcFDvLLGIqqTAGgGhaaQflQ dmrry I23O_MOUSE : 268- 297: fsggs AgQSSIFQsLDvLLGIkhEAGkEspaEflQ emrey MYG_SULDI : 251- 280: miggs AaQSSAMQlLDnLLGVthSPDkQaflDeiS nymip MYG_SULDI : 252- 280: iggsa A-QSSAMQlLDnLLGVthSPDkQaflDeiS nymip YJ48_YEAST : 287- 315: sggsn A-QSSLIQtLDiLLGVkhTANaAhssQgdS kinyl J 10: 61.3643 4( 4) Q-S-S-[AILV]-[FIM]-Q-x-[FL]-D-x-L-L-G-[IV]-x(2)-[EST]-[AP]-[DGN]-x-[AEGQ]-x(3)-[DEQ]-x(2)-[QS] Occurences: 4(4) I23O_HUMAN : 266- 293: ggsag QSSVFQcFDvLLGIqqTAGgGhaaQflQ dmrry I23O_MOUSE : 270- 297: ggsag QSSIFQsLDvLLGIkhEAGkEspaEflQ emrey MYG_SULDI : 253- 280: ggsaa QSSAMQlLDnLLGVthSPDkQaflDeiS nymip YJ48_YEAST : 288- 315: ggsna QSSLIQtLDiLLGVkhTANaAhssQgdS kinyl K 11: 59.7265 4( 4) L-[DQ]-[DE]-[IM]-x(2)-Y-M-x(0,1)-P-x(1,2)-H-[KR]-[ENQ]-[FL]-L-x(2)-L-[ET]-x(2)-[CP]-x(3)-[EP]-x-[IV] Occurences: 4(4) I23O_HUMAN : 292- 320: haaqf LQDMrrYMpPa-HRNFLcsLEsnPsvrEfV lskgd I23O_HUMAN : 292- 320: haaqf LQDMrrYM-PpaHRNFLcsLEsnPsvrEfV lskgd I23O_MOUSE : 296- 324: spaef LQEMreYMpPa-HRNFLffLEsaPpvrEfV isrhn I23O_MOUSE : 296- 324: spaef LQEMreYM-PpaHRNFLffLEsaPpvrEfV isrhn MYG_SULDI : 276- 304: dkqaf LDEIsnYMiPa-HKQLLadLTkmPrkvPqI vaeak YJ48_YEAST : 320- 348: skiny LDEMkkYM-PreHREFLyhLEsvCnirEyV srnas L 12: 59.1401 4( 4) L-x-[EK]-A-Y-[DGNS]-x-C-[IV]-x(2)-L-x(3)-R-x(2)-H-x(0,2)-I-x(0,1)-V-[DTV]-x(3)-[ILM]-x-[PT]-[AS]-x(3)-[DPQ] Occurences: 4(4) I23O_HUMAN : 328- 362: kgdag LrEAYDaCVkaLvslRsyHlqI-VTkyiLiPAsqqP kenkt I23O_MOUSE : 332- 366: rhned LtKAYNeCVngLvsvRkfHlaI-VDtyiMkPSkkkP tdgdk MYG_SULDI : 313- 346: akdan LsKAYSgCVaaLtqyRtyH--IqVVtkyIvTAsksD spksl YJ48_YEAST : 357- 391: asnra LqEAYGrCIsmLkifRdnHiqI-VTkyiIlPSnskQ hgsnk M 13: 57.1943 4( 4) S-S-[AILV]-[FIM]-Q-x-[FL]-D-x-L-L-G-[IV]-x(2)-[EST]-[AP]-[DGN]-x-[AEGQ]-x(3)-[DEQ]-x(2)-[QS] Occurences: 4(4) I23O_HUMAN : 267- 293: gsagq SSVFQcFDvLLGIqqTAGgGhaaQflQ dmrry I23O_MOUSE : 271- 297: gsagq SSIFQsLDvLLGIkhEAGkEspaEflQ emrey MYG_SULDI : 254- 280: gsaaq SSAMQlLDnLLGVthSPDkQaflDeiS nymip YJ48_YEAST : 289- 315: gsnaq SSLIQtLDiLLGVkhTANaAhssQgdS kinyl N 14: 53.0242 4( 4) S-[AILV]-[FIM]-Q-x-[FL]-D-x-L-L-G-[IV]-x(2)-[EST]-[AP]-[DGN]-x-[AEGQ]-x(3)-[DEQ]-x(2)-[QS] Occurences: 4(4) I23O_HUMAN : 268- 293: sagqs SVFQcFDvLLGIqqTAGgGhaaQflQ dmrry I23O_MOUSE : 272- 297: sagqs SIFQsLDvLLGIkhEAGkEspaEflQ emrey MYG_SULDI : 255- 280: saaqs SAMQlLDnLLGVthSPDkQaflDeiS nymip YJ48_YEAST : 290- 315: snaqs SLIQtLDiLLGVkhTANaAhssQgdS kinyl O 15: 52.0688 4( 4) L-x(3)-R-x(2)-H-[IL]-[AQ]-[IV]-V-[DT]-x-Y-I-[ILMV]-x-[AP]-[AS]-x(3)-[PQS]-x(2)-[GNS] Occurences: 4(4) I23O_HUMAN : 339- 365: acvka LvslRsyHLQIVTkYILiPAsqqPkeN ktsed I23O_MOUSE : 343- 369: ecvng LvsvRkfHLAIVDtYIMkPSkkkPtdG dksee MYG_SULDI : 324- 350: gcvaa LtqyRtyHIQVVTkYIVtASksdSpkS laykd YJ48_YEAST : 368- 394: rcism LkifRdnHIQIVTkYIIlPSnskQhgS nkpnv P 16: 51.7587 4( 4) A-Y-[DGNS]-x-C-[IV]-x(2)-L-x(3)-R-x(2)-H-x(0,2)-I-x(0,1)-V-[DTV]-x(3)-[ILM]-x-[PT]-[AS]-x(3)-[DPQ] Occurences: 4(4) I23O_HUMAN : 331- 362: aglre AYDaCVkaLvslRsyHlqI-VTkyiLiPAsqqP kenkt I23O_MOUSE : 335- 366: edltk AYNeCVngLvsvRkfHlaI-VDtyiMkPSkkkP tdgdk MYG_SULDI : 316- 346: anlsk AYSgCVaaLtqyRtyH--IqVVtkyIvTAsksD spksl YJ48_YEAST : 360- 391: ralqe AYGrCIsmLkifRdnHiqI-VTkyiIlPSnskQ hgsnk Q 17: 51.5688 4( 4) L-x(3)-R-x(1,2)-H-[IL]-[AQ]-[IV]-V-[DT]-x-Y-I-[ILMV]-x-[AP]-[AS]-x(3)-[PQS]-x(2)-[GNS] Occurences: 4(4) I23O_HUMAN : 339- 365: acvka LvslRsyHLQIVTkYILiPAsqqPkeN ktsed I23O_MOUSE : 343- 369: ecvng LvsvRkfHLAIVDtYIMkPSkkkPtdG dksee MYG_SULDI : 324- 350: gcvaa LtqyRtyHIQVVTkYIVtASksdSpkS laykd YJ48_YEAST : 368- 394: rcism LkifRdnHIQIVTkYIIlPSnskQhgS nkpnv R 18: 51.5688 4( 4) L-x(2,3)-R-x(2)-H-[IL]-[AQ]-[IV]-V-[DT]-x-Y-I-[ILMV]-x-[AP]-[AS]-x(3)-[PQS]-x(2)-[GNS] Occurences: 4(4) I23O_HUMAN : 339- 365: acvka LvslRsyHLQIVTkYILiPAsqqPkeN ktsed I23O_MOUSE : 343- 369: ecvng LvsvRkfHLAIVDtYIMkPSkkkPtdG dksee MYG_SULDI : 324- 350: gcvaa LtqyRtyHIQVVTkYIVtASksdSpkS laykd YJ48_YEAST : 368- 394: rcism LkifRdnHIQIVTkYIIlPSnskQhgS nkpnv S 19: 51.0688 4( 4) L-x(2,3)-R-x(1,2)-H-[IL]-[AQ]-[IV]-V-[DT]-x-Y-I-[ILMV]-x-[AP]-[AS]-x(3)-[PQS]-x(2)-[GNS] Occurences: 4(4) I23O_HUMAN : 339- 365: acvka LvslRsyHLQIVTkYILiPAsqqPkeN ktsed I23O_MOUSE : 343- 369: ecvng LvsvRkfHLAIVDtYIMkPSkkkPtdG dksee MYG_SULDI : 324- 350: gcvaa LtqyRtyHIQVVTkYIVtASksdSpkS laykd YJ48_YEAST : 368- 394: rcism LkifRdnHIQIVTkYIIlPSnskQhgS nkpnv T 20: 47.5886 4( 4) Y-[DGNS]-x-C-[IV]-x(2)-L-x(3)-R-x(2)-H-x(0,2)-I-x(0,1)-V-[DTV]-x(3)-[ILM]-x-[PT]-[AS]-x(3)-[DPQ] Occurences: 4(4) I23O_HUMAN : 332- 362: glrea YDaCVkaLvslRsyHlqI-VTkyiLiPAsqqP kenkt I23O_MOUSE : 336- 366: dltka YNeCVngLvsvRkfHlaI-VDtyiMkPSkkkP tdgdk MYG_SULDI : 317- 346: nlska YSgCVaaLtqyRtyH--IqVVtkyIvTAsksD spksl YJ48_YEAST : 361- 391: alqea YGrCIsmLkifRdnHiqI-VTkyiIlPSnskQ hgsnk Number of patterns evaluated by Pratt:17144 Total running time: 6 seconds