------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 9 sequences from file ICE_SER PATTERN CONSERVATION: CM: min Nr of Seqs to Match 9 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename ICE_SER.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: CED3_CAEEL 503 CED3_CAEVU 496 CP32_HUMAN 277 I1BC_HUMAN 404 I1BC_MOUSE 402 I1BC_RAT 402 ICHL_HUMAN 435 ICHS_HUMAN 312 NED2_MOUSE 451 Pratt run started at Thu Feb 6 20:04:26 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 37.5305 9( 9) L-x(2)-K-P-K-x(4)-Q-A-C-R-G 2: 33.3604 9( 9) K-P-K-x(4)-Q-A-C-R-G 3: 29.1904 9( 9) P-K-x(4)-Q-A-C-R-G 4: 25.0203 9( 9) K-x(4)-Q-A-C-R-G 5: 24.5203 9( 9) V-x(2,3)-S-H-G-x(4)-I-x-G 6: 24.0203 9( 9) L-x(1,3)-S-H-G-x(4)-I-x-G 7: 20.8503 9( 9) Q-A-C-R-G 8: 19.3503 9( 9) S-H-G-x(0,2)-E-x(1,2)-I 9: 19.3503 9( 9) V-x(2,3)-S-H-G-x(0,2)-E 10: 18.8503 9( 9) L-x(1,3)-S-H-G-x(0,2)-E 11: 16.6802 9( 9) A-C-R-G 12: 16.1802 9( 9) I-Q-A-x(0,1)-C 13: 15.6802 13( 9) I-x(0,1)-Q-A-x(0,1)-C 14: 15.6802 10( 9) G-x(1,2)-E-x(1,2)-I-x-G 15: 15.6802 10( 9) S-x(4,5)-L-x(1,2)-H-x(2)-E 16: 15.6802 10( 9) S-x(5)-L-x(1,2)-H-x(1,2)-E 17: 15.6802 11( 9) R-x(1,2)-G-x(2)-V-x(0,1)-D 18: 15.6802 10( 9) H-G-x(1,2)-E-x(3,4)-G 19: 15.1802 9( 9) F-I-x(0,2)-A-x(0,1)-C 20: 15.1802 9( 9) H-G-x(0,2)-E-x(1,2)-I Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 59.6884 9( 9) L-x-[DGN]-K-P-K-[ILMV]-[FIV]-[FI]-[IV]-Q-A-C-R-G-[DEGT]-x(2)-[DG]-x-[GLV] B 2: 52.8426 9( 9) K-P-K-[ILMV]-[FIV]-[FI]-[IV]-Q-A-C-R-G-[DEGT]-x(2)-[DG]-x-[GLV] C 3: 48.6725 9( 9) P-K-[ILMV]-[FIV]-[FI]-[IV]-Q-A-C-R-G-[DEGT]-x(2)-[DG]-x-[GLV] D 4: 44.5025 9( 9) K-[ILMV]-[FIV]-[FI]-[IV]-Q-A-C-R-G-[DEGT]-x(2)-[DG]-x-[GLV] E 5: 36.3293 11( 9) R-x(1,2)-G-x-[DEPQ]-V-x(0,1)-D-x(2)-[DEGNT]-x(4)-[FL]-x(4)-[WY]-[DENST]-[NV]-[DHKR]-[DNV] F 6: 32.5716 9( 9) S-x-[FIV]-[ILV]-x(2)-L-x(1,2)-H-x(1,2)-E-x-[AGNV]-x(3)-[DGV]-x-[DEGN]-x-[ILPV]-x(4)-[EHKR] G 7: 32.0267 9( 9) V-x(2,3)-S-H-G-x-[EQR]-[EGN]-[AGIV]-I-x-G H 8: 31.5267 9( 9) L-x(1,3)-S-H-G-x-[EQR]-[EGN]-[AGIV]-I-x-G I 9: 28.9083 9( 9) Q-A-C-R-G-[DEGT]-x(2)-[DG]-x-[GLV] J 10: 26.4934 10( 9) S-x(4,5)-L-x(1,2)-H-x(2)-E-x-[AGIV]-x(2)-[CG]-[DTV]-x-[DEG] K 11: 24.7383 9( 9) A-C-R-G-[DEGT]-x(2)-[DG]-x-[GLV] L 12: 23.5203 9( 9) S-H-G-x(0,2)-E-x(1,2)-I-x-G M 13: 22.5788 9( 9) V-x(2,3)-S-H-G-x(0,2)-E-[EG] N 14: 22.5445 9( 9) I-Q-A-x(0,1)-C-[ER]-[GV] O 15: 22.0788 9( 9) L-x(1,3)-S-H-G-x(0,2)-E-[EG] P 16: 22.0445 13( 9) I-x(0,1)-Q-A-x(0,1)-C-[ER]-[GV] Q 17: 20.3998 9( 9) F-I-x(0,2)-A-x(0,1)-C-[ERS]-[GSV] R 18: 19.3503 9( 9) H-G-x(0,2)-E-x(1,2)-I-x-G S 19: 18.2822 9( 9) G-x(1,2)-E-x(1,2)-I-x-G-x-[DNT] T 20: 15.6802 11( 9) R-x(1,2)-G-x(2)-V-x(0,1)-D Best patterns with alignements: fitness hits(seqs) Pattern A 1: 59.6884 9( 9) L-x-[DGN]-K-P-K-[ILMV]-[FIV]-[FI]-[IV]-Q-A-C-R-G-[DEGT]-x(2)-[DG]-x-[GLV] Occurences: 9(9) CED3_CAEEL : 346- 366: anapr LaNKPKIVFVQACRGErrDnG fpvld CED3_CAEVU : 339- 359: anapr LaNKPKLVFVQACRGErrDnG fpvld CP32_HUMAN : 151- 171: drcrs LtGKPKLFIIQACRGTelDcG ietds I1BC_HUMAN : 273- 293: kncps LkDKPKVIIIQACRGDspGvV wfkds I1BC_MOUSE : 272- 292: lkcps LkDKPKVIIIQACRGEkqGvV llkds I1BC_RAT : 272- 292: lkcps LkDKPKVIIIQACRGEkqGvV llkds ICHL_HUMAN : 291- 311: ancps LqNKPKMFFIQACRGDetDrG vdqqd ICHS_HUMAN : 277- 297: ancps LqNKPKMFFIQACRGGaiGsL ghlll NED2_MOUSE : 307- 327: ancps LqNKPKMFFIQACRGDetDrG vdqqd B 2: 52.8426 9( 9) K-P-K-[ILMV]-[FIV]-[FI]-[IV]-Q-A-C-R-G-[DEGT]-x(2)-[DG]-x-[GLV] Occurences: 9(9) CED3_CAEEL : 349- 366: prlan KPKIVFVQACRGErrDnG fpvld CED3_CAEVU : 342- 359: prlan KPKLVFVQACRGErrDnG fpvld CP32_HUMAN : 154- 171: rsltg KPKLFIIQACRGTelDcG ietds I1BC_HUMAN : 276- 293: pslkd KPKVIIIQACRGDspGvV wfkds I1BC_MOUSE : 275- 292: pslkd KPKVIIIQACRGEkqGvV llkds I1BC_RAT : 275- 292: pslkd KPKVIIIQACRGEkqGvV llkds ICHL_HUMAN : 294- 311: pslqn KPKMFFIQACRGDetDrG vdqqd ICHS_HUMAN : 280- 297: pslqn KPKMFFIQACRGGaiGsL ghlll NED2_MOUSE : 310- 327: pslqn KPKMFFIQACRGDetDrG vdqqd C 3: 48.6725 9( 9) P-K-[ILMV]-[FIV]-[FI]-[IV]-Q-A-C-R-G-[DEGT]-x(2)-[DG]-x-[GLV] Occurences: 9(9) CED3_CAEEL : 350- 366: rlank PKIVFVQACRGErrDnG fpvld CED3_CAEVU : 343- 359: rlank PKLVFVQACRGErrDnG fpvld CP32_HUMAN : 155- 171: sltgk PKLFIIQACRGTelDcG ietds I1BC_HUMAN : 277- 293: slkdk PKVIIIQACRGDspGvV wfkds I1BC_MOUSE : 276- 292: slkdk PKVIIIQACRGEkqGvV llkds I1BC_RAT : 276- 292: slkdk PKVIIIQACRGEkqGvV llkds ICHL_HUMAN : 295- 311: slqnk PKMFFIQACRGDetDrG vdqqd ICHS_HUMAN : 281- 297: slqnk PKMFFIQACRGGaiGsL ghlll NED2_MOUSE : 311- 327: slqnk PKMFFIQACRGDetDrG vdqqd D 4: 44.5025 9( 9) K-[ILMV]-[FIV]-[FI]-[IV]-Q-A-C-R-G-[DEGT]-x(2)-[DG]-x-[GLV] Occurences: 9(9) CED3_CAEEL : 351- 366: lankp KIVFVQACRGErrDnG fpvld CED3_CAEVU : 344- 359: lankp KLVFVQACRGErrDnG fpvld CP32_HUMAN : 156- 171: ltgkp KLFIIQACRGTelDcG ietds I1BC_HUMAN : 278- 293: lkdkp KVIIIQACRGDspGvV wfkds I1BC_MOUSE : 277- 292: lkdkp KVIIIQACRGEkqGvV llkds I1BC_RAT : 277- 292: lkdkp KVIIIQACRGEkqGvV llkds ICHL_HUMAN : 296- 311: lqnkp KMFFIQACRGDetDrG vdqqd ICHS_HUMAN : 282- 297: lqnkp KMFFIQACRGGaiGsL ghlll NED2_MOUSE : 312- 327: lqnkp KMFFIQACRGDetDrG vdqqd E 5: 36.3293 11( 9) R-x(1,2)-G-x-[DEPQ]-V-x(0,1)-D-x(2)-[DEGNT]-x(4)-[FL]-x(4)-[WY]-[DENST]-[NV]-[DHKR]-[DNV] Occurences: 11(9) CED3_CAEEL : 363- 388: crger RdnGfPVlDsvDgvpaFlrrgWDNRD gplfn CED3_CAEVU : 356- 381: crger RdnGfPVlDsvDgvpsLirrgWDNRD gpnfl CP32_HUMAN : 64- 87: tgmts Rs-GtDV-DaaNlretFrnlkYEVRN kndlt I1BC_HUMAN : 178- 202: fdsip RrtGaEV-DitGmtmlLqnlgYSVDV kknlt I1BC_HUMAN : 179- 202: dsipr Rt-GaEV-DitGmtmlLqnlgYSVDV kknlt I1BC_MOUSE : 178- 201: qhlsp Rv-GaQV-DlrEmkllLedlgYTVKV kenlt I1BC_RAT : 177- 201: fqhls RrvGaDV-DlrEmkllLqdlgYTVKV kenlt I1BC_RAT : 178- 201: qhlsr Rv-GaDV-DlrEmkllLqdlgYTVKV kenlt ICHL_HUMAN : 202- 225: kelef Rs-GgDV-DhsTlvtlFkllgYDVHV lcdqt ICHS_HUMAN : 188- 211: kelef Rs-GgDV-DhsTlvtlFkllgYDVHV lcdqt NED2_MOUSE : 218- 241: kdlef Rs-GgDV-DhtTlvtlFkllgYNVHV lhdqt F 6: 32.5716 9( 9) S-x-[FIV]-[ILV]-x(2)-L-x(1,2)-H-x(1,2)-E-x-[AGNV]-x(3)-[DGV]-x-[DEGN]-x-[ILPV]-x(4)-[EHKR] Occurences: 9(9) CED3_CAEEL : 307- 332: eshgd SaILviLs-Hg-EeNviiGvDdIpistH eiydl CED3_CAEEL : 307- 333: eshgd SaILviLs-HgeEnViigVdDiPisthE iydll CED3_CAEVU : 300- 325: ethgd SaILviLs-Hg-EeNviiGvDdVsvnvH eiydl CP32_HUMAN : 112- 138: dhskr SsFVcvLlsHg-EeGiifGtNgPvdlkK itnff I1BC_HUMAN : 347- 374: hptmg SvFIgrLieHmqEyAcscDvEeIfrkvR fsfeq I1BC_MOUSE : 345- 372: hpvrg SlFIesLikHmkEyAwscDlEdIfrkvR fsfeq I1BC_RAT : 345- 372: hpvrg SlFIesLikHmkEyAwscDlEdIfrkvR fsfeq ICHL_HUMAN : 252- 278: hrvtd ScIValLs-HgvEgAiygVdGkLlqlqE vfqlf ICHS_HUMAN : 238- 264: hrvtd ScIValLs-HgvEgAiygVdGkLlqlqE vfqlf NED2_MOUSE : 268- 294: hrvtd ScVValLs-HgvEgGiygVdGkLlqlqE vfrlf G 7: 32.0267 9( 9) V-x(2,3)-S-H-G-x-[EQR]-[EGN]-[AGIV]-I-x-G Occurences: 9(9) CED3_CAEEL : 311- 323: dsail Vil-SHGeENVIiG vddip CED3_CAEVU : 304- 316: dsail Vil-SHGeENVIiG vddvs CP32_HUMAN : 117- 129: ssfvc Vll-SHGeEGIIfG tngpv I1BC_HUMAN : 233- 245: dstfl Vfm-SHGiREGIcG kkhse I1BC_MOUSE : 232- 244: dstfl Vfm-SHGiQEGIcG ttysn I1BC_RAT : 232- 244: dstfl Vfm-SHGlQEGIcG itysn ICHL_HUMAN : 255- 268: tdsci VallSHGvEGAIyG vdgkl ICHS_HUMAN : 241- 254: tdsci VallSHGvEGAIyG vdgkl NED2_MOUSE : 271- 284: tdscv VallSHGvEGGIyG vdgkl H 8: 31.5267 9( 9) L-x(1,3)-S-H-G-x-[EQR]-[EGN]-[AGIV]-I-x-G Occurences: 9(9) CED3_CAEEL : 310- 323: gdsai LvilSHGeENVIiG vddip CED3_CAEVU : 303- 316: gdsai LvilSHGeENVIiG vddvs CP32_HUMAN : 118- 129: sfvcv Ll--SHGeEGIIfG tngpv I1BC_HUMAN : 232- 245: sdstf LvfmSHGiREGIcG kkhse I1BC_MOUSE : 231- 244: sdstf LvfmSHGiQEGIcG ttysn I1BC_RAT : 231- 244: sdstf LvfmSHGlQEGIcG itysn ICHL_HUMAN : 257- 268: sciva Ll--SHGvEGAIyG vdgkl ICHS_HUMAN : 243- 254: sciva Ll--SHGvEGAIyG vdgkl NED2_MOUSE : 273- 284: scvva Ll--SHGvEGGIyG vdgkl I 9: 28.9083 9( 9) Q-A-C-R-G-[DEGT]-x(2)-[DG]-x-[GLV] Occurences: 9(9) CED3_CAEEL : 356- 366: kivfv QACRGErrDnG fpvld CED3_CAEVU : 349- 359: klvfv QACRGErrDnG fpvld CP32_HUMAN : 161- 171: klfii QACRGTelDcG ietds I1BC_HUMAN : 283- 293: kviii QACRGDspGvV wfkds I1BC_MOUSE : 282- 292: kviii QACRGEkqGvV llkds I1BC_RAT : 282- 292: kviii QACRGEkqGvV llkds ICHL_HUMAN : 301- 311: kmffi QACRGDetDrG vdqqd ICHS_HUMAN : 287- 297: kmffi QACRGGaiGsL ghlll NED2_MOUSE : 317- 327: kmffi QACRGDetDrG vdqqd J 10: 26.4934 10( 9) S-x(4,5)-L-x(1,2)-H-x(2)-E-x-[AGIV]-x(2)-[CG]-[DTV]-x-[DEG] Occurences: 10(9) CED3_CAEEL : 307- 326: eshgd SailviLs-HgeEnViiGVdD ipist CED3_CAEVU : 300- 319: ethgd SailviLs-HgeEnViiGVdD vsvnv CP32_HUMAN : 112- 132: dhskr SsfvcvLlsHgeEgIifGTnG pvdlk CP32_HUMAN : 113- 132: hskrs SfvcvlLs-HgeEgIifGTnG pvdlk CP32_HUMAN : 113- 132: hskrs Sfvcv-LlsHgeEgIifGTnG pvdlk I1BC_HUMAN : 347- 367: hptmg SvfigrLieHmqEyAcsCDvE eifrk I1BC_MOUSE : 345- 365: hpvrg SlfiesLikHmkEyAwsCDlE difrk I1BC_RAT : 345- 365: hpvrg SlfiesLikHmkEyAwsCDlE difrk ICHL_HUMAN : 252- 271: hrvtd ScivalLs-HgvEgAiyGVdG kllql ICHL_HUMAN : 252- 271: hrvtd Sciva-LlsHgvEgAiyGVdG kllql ICHS_HUMAN : 238- 257: hrvtd ScivalLs-HgvEgAiyGVdG kllql ICHS_HUMAN : 238- 257: hrvtd Sciva-LlsHgvEgAiyGVdG kllql NED2_MOUSE : 268- 287: hrvtd ScvvalLs-HgvEgGiyGVdG kllql NED2_MOUSE : 268- 287: hrvtd Scvva-LlsHgvEgGiyGVdG kllql K 11: 24.7383 9( 9) A-C-R-G-[DEGT]-x(2)-[DG]-x-[GLV] Occurences: 9(9) CED3_CAEEL : 357- 366: ivfvq ACRGErrDnG fpvld CED3_CAEVU : 350- 359: lvfvq ACRGErrDnG fpvld CP32_HUMAN : 162- 171: lfiiq ACRGTelDcG ietds I1BC_HUMAN : 284- 293: viiiq ACRGDspGvV wfkds I1BC_MOUSE : 283- 292: viiiq ACRGEkqGvV llkds I1BC_RAT : 283- 292: viiiq ACRGEkqGvV llkds ICHL_HUMAN : 302- 311: mffiq ACRGDetDrG vdqqd ICHS_HUMAN : 288- 297: mffiq ACRGGaiGsL ghlll NED2_MOUSE : 318- 327: mffiq ACRGDetDrG vdqqd L 12: 23.5203 9( 9) S-H-G-x(0,2)-E-x(1,2)-I-x-G Occurences: 9(9) CED3_CAEEL : 314- 323: ilvil SHGe-EnvIiG vddip CED3_CAEVU : 307- 316: ilvil SHGe-EnvIiG vddvs CP32_HUMAN : 120- 129: vcvll SHGe-EgiIfG tngpv I1BC_HUMAN : 236- 245: flvfm SHGirEg-IcG kkhse I1BC_MOUSE : 235- 244: flvfm SHGiqEg-IcG ttysn I1BC_RAT : 235- 244: flvfm SHGlqEg-IcG itysn ICHL_HUMAN : 259- 268: ivall SHGv-EgaIyG vdgkl ICHS_HUMAN : 245- 254: ivall SHGv-EgaIyG vdgkl NED2_MOUSE : 275- 284: vvall SHGv-EggIyG vdgkl M 13: 22.5788 9( 9) V-x(2,3)-S-H-G-x(0,2)-E-[EG] Occurences: 9(9) CED3_CAEEL : 311- 318: dsail Vil-SHG--EE nviig CED3_CAEVU : 304- 311: dsail Vil-SHG--EE nviig CP32_HUMAN : 117- 124: ssfvc Vll-SHG--EE giifg CP32_HUMAN : 117- 125: ssfvc Vll-SHGe-EG iifgt I1BC_HUMAN : 233- 242: dstfl Vfm-SHGirEG icgkk I1BC_MOUSE : 232- 241: dstfl Vfm-SHGiqEG icgtt I1BC_RAT : 232- 241: dstfl Vfm-SHGlqEG icgit ICHL_HUMAN : 255- 264: tdsci VallSHGv-EG aiygv ICHS_HUMAN : 241- 250: tdsci VallSHGv-EG aiygv NED2_MOUSE : 271- 280: tdscv VallSHGv-EG giygv N 14: 22.5445 9( 9) I-Q-A-x(0,1)-C-[ER]-[GV] Occurences: 9(9) CED3_CAEEL : 438- 444: rgswf IQAvCEV fstha CED3_CAEVU : 429- 435: rgswf IQAvCEV fstha CP32_HUMAN : 160- 165: pklfi IQA-CRG teldc I1BC_HUMAN : 282- 287: pkvii IQA-CRG dspgv I1BC_MOUSE : 281- 286: pkvii IQA-CRG ekqgv I1BC_RAT : 281- 286: pkvii IQA-CRG ekqgv ICHL_HUMAN : 300- 305: pkmff IQA-CRG detdr ICHS_HUMAN : 286- 291: pkmff IQA-CRG gaigs NED2_MOUSE : 316- 321: pkmff IQA-CRG detdr O 15: 22.0788 9( 9) L-x(1,3)-S-H-G-x(0,2)-E-[EG] Occurences: 9(9) CED3_CAEEL : 310- 318: gdsai LvilSHG--EE nviig CED3_CAEVU : 303- 311: gdsai LvilSHG--EE nviig CP32_HUMAN : 118- 124: sfvcv Ll--SHG--EE giifg CP32_HUMAN : 118- 125: sfvcv Ll--SHGe-EG iifgt I1BC_HUMAN : 232- 242: sdstf LvfmSHGirEG icgkk I1BC_MOUSE : 231- 241: sdstf LvfmSHGiqEG icgtt I1BC_RAT : 231- 241: sdstf LvfmSHGlqEG icgit ICHL_HUMAN : 257- 264: sciva Ll--SHGv-EG aiygv ICHS_HUMAN : 243- 250: sciva Ll--SHGv-EG aiygv NED2_MOUSE : 273- 280: scvva Ll--SHGv-EG giygv P 16: 22.0445 13( 9) I-x(0,1)-Q-A-x(0,1)-C-[ER]-[GV] Occurences: 13(9) CED3_CAEEL : 438- 444: rgswf I-QAvCEV fstha CED3_CAEVU : 429- 435: rgswf I-QAvCEV fstha CP32_HUMAN : 159- 165: kpklf IiQA-CRG teldc CP32_HUMAN : 160- 165: pklfi I-QA-CRG teldc I1BC_HUMAN : 281- 287: kpkvi IiQA-CRG dspgv I1BC_HUMAN : 282- 287: pkvii I-QA-CRG dspgv I1BC_MOUSE : 280- 286: kpkvi IiQA-CRG ekqgv I1BC_MOUSE : 281- 286: pkvii I-QA-CRG ekqgv I1BC_RAT : 280- 286: kpkvi IiQA-CRG ekqgv I1BC_RAT : 281- 286: pkvii I-QA-CRG ekqgv ICHL_HUMAN : 300- 305: pkmff I-QA-CRG detdr ICHS_HUMAN : 286- 291: pkmff I-QA-CRG gaigs NED2_MOUSE : 316- 321: pkmff I-QA-CRG detdr Q 17: 20.3998 9( 9) F-I-x(0,2)-A-x(0,1)-C-[ERS]-[GSV] Occurences: 9(9) CED3_CAEEL : 437- 444: argsw FIq-AvCEV fstha CED3_CAEVU : 428- 435: argsw FIq-AvCEV fstha CP32_HUMAN : 158- 165: gkpkl FIiqA-CRG teldc I1BC_HUMAN : 327- 333: hiekd FI--AfCSS tpdnv I1BC_MOUSE : 325- 331: hiekd FI--AfCSS tpdnv I1BC_RAT : 325- 331: hiekd FI--AfCSS tpdnv ICHL_HUMAN : 299- 305: kpkmf FIq-A-CRG detdr ICHS_HUMAN : 285- 291: kpkmf FIq-A-CRG gaigs NED2_MOUSE : 315- 321: kpkmf FIq-A-CRG detdr R 18: 19.3503 9( 9) H-G-x(0,2)-E-x(1,2)-I-x-G Occurences: 9(9) CED3_CAEEL : 315- 323: lvils HGe-EnvIiG vddip CED3_CAEVU : 308- 316: lvils HGe-EnvIiG vddvs CP32_HUMAN : 121- 129: cvlls HGe-EgiIfG tngpv I1BC_HUMAN : 237- 245: lvfms HGirEg-IcG kkhse I1BC_MOUSE : 236- 244: lvfms HGiqEg-IcG ttysn I1BC_RAT : 236- 244: lvfms HGlqEg-IcG itysn ICHL_HUMAN : 260- 268: valls HGv-EgaIyG vdgkl ICHS_HUMAN : 246- 254: valls HGv-EgaIyG vdgkl NED2_MOUSE : 276- 284: valls HGv-EggIyG vdgkl S 19: 18.2822 9( 9) G-x(1,2)-E-x(1,2)-I-x-G-x-[DNT] Occurences: 9(9) CED3_CAEEL : 316- 325: vilsh Ge-EnvIiGvD dipis CED3_CAEVU : 309- 318: vilsh Ge-EnvIiGvD dvsvn CP32_HUMAN : 122- 131: vllsh Ge-EgiIfGtN gpvdl I1BC_HUMAN : 181- 190: iprrt Ga-EvdItGmT mllqn I1BC_MOUSE : 237- 246: vfmsh GiqEg-IcGtT ysnev I1BC_RAT : 237- 246: vfmsh GlqEg-IcGiT ysnev ICHL_HUMAN : 261- 270: allsh Gv-EgaIyGvD gkllq ICHS_HUMAN : 247- 256: allsh Gv-EgaIyGvD gkllq NED2_MOUSE : 277- 286: allsh Gv-EggIyGvD gkllq T 20: 15.6802 11( 9) R-x(1,2)-G-x(2)-V-x(0,1)-D Occurences: 11(9) CED3_CAEEL : 363- 371: crger RdnGfpVlD svdgv CED3_CAEVU : 356- 364: crger RdnGfpVlD svdgv CP32_HUMAN : 64- 70: tgmts Rs-GtdV-D aanlr I1BC_HUMAN : 178- 185: fdsip RrtGaeV-D itgmt I1BC_HUMAN : 179- 185: dsipr Rt-GaeV-D itgmt I1BC_MOUSE : 178- 184: qhlsp Rv-GaqV-D lremk I1BC_RAT : 177- 184: fqhls RrvGadV-D lremk I1BC_RAT : 178- 184: qhlsr Rv-GadV-D lremk ICHL_HUMAN : 202- 208: kelef Rs-GgdV-D hstlv ICHS_HUMAN : 188- 194: kelef Rs-GgdV-D hstlv NED2_MOUSE : 218- 224: kdlef Rs-GgdV-D httlv Number of patterns evaluated by Pratt:5588 Total running time: 5 seconds