------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 11 sequences from file HUPF_HYPC PATTERN CONSERVATION: CM: min Nr of Seqs to Match 11 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename HUPF_HYPC.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: HOXL_ALCEU 106 HOXL_AZOVI 106 HUPF_RHILV 98 HUPF_RHOCA 106 HYBG_ECOLI 82 HYPC_ALCEU 90 HYPC_AZOVI 84 HYPC_ECOLI 90 HYPC_RHILV 75 HYPC_RHOCA 96 YFRC_PROVU 96 Pratt run started at Thu Feb 6 19:56:45 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 14.6802 11( 11) M-C-x(0,2)-I-x(0,2)-P 2: 11.5102 19( 11) L-x(0,1)-A-x(0,1)-L 3: 11.5102 20( 11) A-x(3,4)-L-x(0,1)-A 4: 11.0102 23( 11) E-x(0,2)-A-x(3,4)-L 5: 11.0102 15( 11) E-x(1,2)-A-x(3,5)-L 6: 11.0102 12( 11) L-x(1,2)-V-x(2,4)-A 7: 11.0102 13( 11) A-x(0,1)-V-x(1,3)-G 8: 10.5102 21( 11) A-x(3,5)-E-x(0,2)-A 9: 8.3401 19( 11) G-x-A 10: 8.3401 27( 11) A-L 11: 8.3401 23( 11) A-x(3)-L 12: 8.3401 22( 11) D-x(3)-A 13: 8.3401 18( 11) L-x(5)-V 14: 8.3401 26( 11) L-x(5)-A 15: 8.3401 13( 11) C-x(3)-P 16: 7.8401 26( 11) A-x(2,3)-D 17: 7.8401 21( 11) R-x(3,4)-A 18: 7.8401 26( 11) E-x(1,2)-A 19: 7.8401 24( 11) L-x(2,3)-E 20: 7.8401 43( 11) L-x(4,5)-A Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 23.2296 11( 11) C-[ILV]-[AG]-[IV]-P-x-[QR]-[ILV] B 2: 20.5129 11( 11) M-C-x(0,2)-I-x(0,2)-P-x-[QR]-[ILV] C 3: 14.8323 12( 11) L-x(4,5)-A-x(3)-[AGILV]-x(4)-[AS]-x(4)-[ADENT] D 4: 13.5954 12( 11) E-x(1,2)-A-x(3,5)-L-x-[AGL] E 5: 12.8888 21( 11) E-x(0,2)-A-x(3,4)-L-x-[AGLPV] F 6: 12.5573 11( 11) G-x-A-[FILMV]-x(3)-[DENR] G 7: 11.5102 19( 11) L-x(0,1)-A-x(0,1)-L H 8: 11.5102 20( 11) A-x(3,4)-L-x(0,1)-A I 9: 11.0102 12( 11) L-x(1,2)-V-x(2,4)-A J 10: 11.0102 13( 11) A-x(0,1)-V-x(1,3)-G K 11: 10.9488 15( 11) A-x(2)-[GTV]-L L 12: 10.5102 21( 11) A-x(3,5)-E-x(0,2)-A M 13: 10.3023 21( 11) A-L-x-[ACDGN] N 14: 10.2558 16( 11) L-[AILPV]-x(4)-A O 15: 10.2227 17( 11) D-x(2)-[DEQRS]-A P 16: 10.0279 18( 11) E-x(1,2)-A-x(2)-[DEST] Q 17: 10.0210 18( 11) A-x(2,3)-D-x(3)-[AGLV] R 18: 8.3401 18( 11) L-x(5)-V S 19: 7.8401 21( 11) R-x(3,4)-A T 20: 7.8401 24( 11) L-x(2,3)-E Best patterns with alignements: fitness hits(seqs) Pattern A 1: 23.2296 11( 11) C-[ILV]-[AG]-[IV]-P-x-[QR]-[ILV] Occurences: 11(11) HOXL_ALCEU : 2- 9: m CIGIPmQV maiep HOXL_AZOVI : 2- 9: m CIGIPlRV lecap HUPF_RHILV : 2- 9: m CIGIPmRV vvgse HUPF_RHOCA : 2- 9: m CVGIPvQL lavdg HYBG_ECOLI : 2- 9: m CIGVPgQV lavge HYPC_ALCEU : 2- 9: m CLAIPaRL velqa HYPC_AZOVI : 2- 9: m CLAIPvRI eelld HYPC_ECOLI : 2- 9: m CIGVPgQI rtidg HYPC_RHILV : 2- 9: m CLAIPvQV kellp HYPC_RHOCA : 2- 9: m CLGIPgQI vaitd YFRC_PROVU : 2- 9: m CLGIPgQV vevgk B 2: 20.5129 11( 11) M-C-x(0,2)-I-x(0,2)-P-x-[QR]-[ILV] Occurences: 11(11) HOXL_ALCEU : 1- 9: MCigI--PmQV maiep HOXL_ALCEU : 1- 9: MC--IgiPmQV maiep HOXL_AZOVI : 1- 9: MCigI--PlRV lecap HOXL_AZOVI : 1- 9: MC--IgiPlRV lecap HUPF_RHILV : 1- 9: MCigI--PmRV vvgse HUPF_RHILV : 1- 9: MC--IgiPmRV vvgse HUPF_RHOCA : 1- 9: MCvgI--PvQL lavdg HYBG_ECOLI : 1- 9: MC--IgvPgQV lavge HYPC_ALCEU : 1- 9: MClaI--PaRL velqa HYPC_AZOVI : 1- 9: MClaI--PvRI eelld HYPC_ECOLI : 1- 9: MC--IgvPgQI rtidg HYPC_RHILV : 1- 9: MClaI--PvQV kellp HYPC_RHOCA : 1- 9: MClgI--PgQI vaitd YFRC_PROVU : 1- 9: MClgI--PgQV vevgk C 3: 14.8323 12( 11) L-x(4,5)-A-x(3)-[AGILV]-x(4)-[AS]-x(4)-[ADENT] Occurences: 12(11) HOXL_ALCEU : 43- 63: qgdwl LvfldsArerIdalrAheidA tldml HOXL_AZOVI : 43- 63: pgdwl LvfldaAreiLdagrAarirE alral HUPF_RHILV : 43- 63: pgthl LthlgsAirvLdadeAraidD alagl HUPF_RHOCA : 43- 63: pgdwv LaflgaArevLtpeaAaqisA alggl HYBG_ECOLI : 50- 70: lgqwv LvhvgfAmsiIdedeAkatlD alrqm HYPC_ALCEU : 9- 28: aipar Lvelq-AdqqGvvdlSgvrkT islal HYPC_AZOVI : 45- 64: gdyvi Lhvgf-AlqkLdeaeAqrtlA llael HYPC_ECOLI : 49- 69: vgqwv LvhvgfAmsvIneaeArdtlD alqnm HYPC_RHILV : 45- 64: gdyvv Lhvgy-AlakIdpeeAertlA lirer HYPC_RHOCA : 44- 63: gpled Llghw-AlihVgfamSlideA eaart HYPC_RHOCA : 50- 70: lghwa LihvgfAmslIdeaeAartlE alrdl YFRC_PROVU : 50- 70: igkwv LvhvgfAmsiVneqeAqetlN almam D 4: 13.5954 12( 11) E-x(1,2)-A-x(3,5)-L-x-[AGL] Occurences: 12(11) HOXL_ALCEU : 60- 70: alrah EidAtldm-LqA acwvl HOXL_AZOVI : 11- 20: plrvl Ec-Apgra-LcG dengv HUPF_RHILV : 57- 67: vldad EarAidda-LaG laeav HUPF_RHILV : 73- 82: laeav EgrAfdm--LfA dlisr HUPF_RHOCA : 56- 67: evltp EaaAqisaaLgG lrslm HYBG_ECOLI : 62- 71: msiid EdeAkat--LdA lrqmd HYPC_ALCEU : 57- 65: gkidp Ee-Aert--LrL faele HYPC_ALCEU : 57- 67: gkidp Ee-AertlrLfA elerv HYPC_AZOVI : 56- 65: lqkld EaeAqrt--LaL laelg HYPC_AZOVI : 56- 67: lqkld EaeAqrtlaLlA elgrl HYPC_ECOLI : 61- 70: msvin EaeArdt--LdA lqnmf HYPC_RHILV : 57- 65: akidp Ee-Aert--LaL irera HYPC_RHOCA : 62- 71: mslid EaeAart--LeA lrdlg YFRC_PROVU : 62- 71: msivn EqeAqet--LnA lmamg E 5: 12.8888 21( 11) E-x(0,2)-A-x(3,4)-L-x-[AGLPV] Occurences: 21(11) HOXL_ALCEU : 60- 70: alrah EidAtldmLqA acwvl HOXL_AZOVI : 11- 20: plrvl Ec-ApgraLcG dengv HOXL_AZOVI : 34- 44: dtrlv EppApgdwLlV fldaa HOXL_AZOVI : 63- 70: aarir E--Alra-LqA vqagd HUPF_RHILV : 57- 67: vldad EarAiddaLaG laeav HUPF_RHILV : 73- 82: laeav EgrAfdm-LfA dlisr HUPF_RHOCA : 85- 93: afadl E--ArspqLpP hlqaa HYBG_ECOLI : 62- 71: msiid EdeAkat-LdA lrqmd HYBG_ECOLI : 64- 71: iided E--Akat-LdA lrqmd HYPC_ALCEU : 57- 65: gkidp Ee-Aert-LrL faele HYPC_ALCEU : 58- 65: kidpe E--Aert-LrL faele HYPC_AZOVI : 56- 65: lqkld EaeAqrt-LaL laelg HYPC_AZOVI : 58- 65: kldea E--Aqrt-LaL laelg HYPC_ECOLI : 61- 70: msvin EaeArdt-LdA lqnmf HYPC_ECOLI : 63- 70: vinea E--Ardt-LdA lqnmf HYPC_RHILV : 57- 65: akidp Ee-Aert-LaL irera HYPC_RHILV : 58- 65: kidpe E--Aert-LaL irera HYPC_RHOCA : 62- 71: mslid EaeAart-LeA lrdlg HYPC_RHOCA : 64- 71: lidea E--Aart-LeA lrdlg YFRC_PROVU : 62- 71: msivn EqeAqet-LnA lmamg YFRC_PROVU : 64- 71: ivneq E--Aqet-LnA lmamg F 6: 12.5573 11( 11) G-x-A-[FILMV]-x(3)-[DENR] Occurences: 11(11) HOXL_ALCEU : 15- 22: maiep GyAVcagR gerrr HOXL_AZOVI : 15- 22: lecap GrALcgdE ngvrw HUPF_RHILV : 47- 54: llthl GsAIrvlD adear HUPF_RHOCA : 78- 85: aggdl GdAFadlE arspq HYBG_ECOLI : 54- 61: vlvhv GfAMsiiD edeak HYPC_ALCEU : 48- 55: vivhv GyAIgkiD peeae HYPC_AZOVI : 48- 55: vilhv GfALqklD eaeaq HYPC_ECOLI : 53- 60: vlvhv GfAMsviN eaear HYPC_RHILV : 48- 55: vvlhv GyALakiD peeae HYPC_RHOCA : 54- 61: alihv GfAMsliD eaeaa YFRC_PROVU : 54- 61: vlvhv GfAMsivN eqeaq G 7: 11.5102 19( 11) L-x(0,1)-A-x(0,1)-L Occurences: 19(11) HOXL_ALCEU : 94- 97: rwped L-AvL snsrd HOXL_AZOVI : 65- 68: rirea LrA-L qavqa HOXL_AZOVI : 79- 82: gdpaa L-AgL fadld HOXL_AZOVI : 82- 86: aalag LfAdL drepq HOXL_AZOVI : 96- 100: qlpph LqAqL ppkep HUPF_RHILV : 65- 68: aidda L-AgL aeave HUPF_RHILV : 80- 84: rafdm LfAdL isrep HUPF_RHOCA : 43- 46: pgdwv L-AfL gaare HUPF_RHOCA : 95- 99: qlpph LqAaL dagkt HYBG_ECOLI : 69- 72: eakat LdA-L rqmdy HYPC_ALCEU : 31- 33: rktis L-A-L madav HYPC_ALCEU : 65- 69: ertlr LfAeL ervqp HYPC_AZOVI : 63- 65: eaqrt L-A-L laelg HYPC_AZOVI : 63- 66: eaqrt L-AlL aelgr HYPC_AZOVI : 65- 69: qrtla LlAeL grlae HYPC_AZOVI : 66- 69: rtlal L-AeL grlae HYPC_ECOLI : 68- 71: eardt LdA-L qnmfd HYPC_RHILV : 63- 65: eaert L-A-L irera HYPC_RHOCA : 69- 72: eaart LeA-L rdlge YFRC_PROVU : 69- 72: eaqet LnA-L mamge H 8: 11.5102 20( 11) A-x(3,4)-L-x(0,1)-A Occurences: 20(11) HOXL_ALCEU : 63- 70: aheid AtldmLqA acwvl HOXL_AZOVI : 48- 55: lvfld AareiLdA graar HOXL_AZOVI : 49- 55: vflda Arei-LdA graar HOXL_AZOVI : 64- 70: arire Alra-LqA vqagd HOXL_AZOVI : 77- 84: qagdp AalagLfA dldre HOXL_AZOVI : 78- 84: agdpa Alag-LfA dldre HUPF_RHILV : 49- 55: thlgs Airv-LdA deara HUPF_RHILV : 60- 66: adear AiddaL-A glaea HUPF_RHILV : 64- 69: raidd Alag-L-A eaveg HUPF_RHILV : 76- 82: avegr Afdm-LfA dlisr HUPF_RHOCA : 80- 86: gdlgd Afad-LeA rspql HYBG_ECOLI : 65- 71: idede Akat-LdA lrqmd HYPC_ALCEU : 7- 14: claip ArlveLqA dqqgv HYPC_AZOVI : 59- 64: ldeae Aqrt-L-A llael HYPC_AZOVI : 67- 73: tlall AelgrL-A eaeqa HYPC_ECOLI : 64- 70: ineae Ardt-LdA lqnmf HYPC_RHILV : 59- 64: idpee Aert-L-A lirer HYPC_RHOCA : 65- 71: ideae Aart-LeA lrdlg HYPC_RHOCA : 78- 83: rdlge Aqet-L-A qmaeg YFRC_PROVU : 65- 71: vneqe Aqet-LnA lmamg I 9: 11.0102 12( 11) L-x(1,2)-V-x(2,4)-A Occurences: 12(11) HOXL_ALCEU : 42- 49: qqgdw Ll-VfldsA rerid HOXL_AZOVI : 7- 13: cigip Lr-Vlec-A pgral HOXL_AZOVI : 42- 48: apgdw Ll-Vfld-A areil HOXL_AZOVI : 42- 49: apgdw Ll-VfldaA reild HUPF_RHILV : 30- 37: issis LmlVgpq-A pgthl HUPF_RHOCA : 30- 36: pglvd LslVpe--A rpgdw HYBG_ECOLI : 50- 56: lgqwv LvhVgf--A msiid HYPC_ALCEU : 69- 76: rlfae LerVqpp-A sepmh HYPC_AZOVI : 45- 50: gdyvi Lh-Vgf--A lqkld HYPC_ECOLI : 49- 55: vgqwv LvhVgf--A msvin HYPC_RHILV : 45- 50: gdyvv Lh-Vgy--A lakid HYPC_RHILV : 45- 52: gdyvv Lh-VgyalA kidpe HYPC_RHOCA : 50- 56: lghwa LihVgf--A mslid YFRC_PROVU : 50- 56: igkwv LvhVgf--A msivn J 10: 11.0102 13( 11) A-x(0,1)-V-x(1,3)-G Occurences: 13(11) HOXL_ALCEU : 17- 21: iepgy A-Vca-G rgerr HOXL_AZOVI : 70- 74: lralq A-Vqa-G dpaal HUPF_RHILV : 71- 74: aglae A-Ve--G rafdm HUPF_RHOCA : 11- 14: pvqll A-Vd--G irgdv HYBG_ECOLI : 20- 26: dihql AqVevcG ikrdv HYPC_ALCEU : 37- 40: almad A-Vv--G dyviv HYPC_AZOVI : 18- 23: ldeqs A-VaciG glrkt HYPC_ECOLI : 17- 23: idgnq AkVdvcG iqrdv HYPC_RHILV : 18- 24: lpdnm AkVtldG vskiv HYPC_RHOCA : 22- 26: rmmal AdVs--G vkrav HYPC_RHOCA : 34- 39: ravnv AcVae-G pledl YFRC_PROVU : 20- 26: titen AlVdvcG vkrev YFRC_PROVU : 34- 39: revni AlVce-G epdtm K 11: 10.9488 15( 11) A-x(2)-[GTV]-L Occurences: 15(11) HOXL_ALCEU : 71- 75: dmlqa AcwVL thpkr HOXL_AZOVI : 78- 82: agdpa AlaGL fadld HUPF_RHILV : 49- 53: thlgs AirVL dadea HUPF_RHILV : 64- 68: raidd AlaGL aeave HUPF_RHOCA : 49- 53: aflga AreVL tpeaa HUPF_RHOCA : 64- 68: aqisa AlgGL rslma HYBG_ECOLI : 65- 69: idede AkaTL dalrq HYPC_ALCEU : 59- 63: idpee AerTL rlfae HYPC_AZOVI : 59- 63: ldeae AqrTL allae HYPC_ECOLI : 64- 68: ineae ArdTL dalqn HYPC_RHILV : 18- 22: lpdnm AkvTL dgvsk HYPC_RHILV : 59- 63: idpee AerTL alire HYPC_RHOCA : 65- 69: ideae AarTL ealrd HYPC_RHOCA : 78- 82: rdlge AqeTL aqmae YFRC_PROVU : 65- 69: vneqe AqeTL nalma L 12: 10.5102 21( 11) A-x(3,5)-E-x(0,2)-A Occurences: 21(11) HOXL_ALCEU : 55- 63: rerid Alrah-EidA tldml HOXL_AZOVI : 58- 64: ldagr Aarir-E--A lralq HOXL_AZOVI : 59- 64: dagra Arir--E--A lralq HUPF_RHILV : 64- 71: raidd AlaglaE--A vegra HUPF_RHILV : 66- 71: iddal Agla--E--A vegra HUPF_RHILV : 69- 76: alagl Aeav--EgrA fdmlf HUPF_RHOCA : 80- 86: gdlgd Afadl-E--A rspql HYBG_ECOLI : 56- 65: vhvgf AmsiidEdeA katld HYPC_ALCEU : 7- 14: claip Arlv--ElqA dqqgv HYPC_AZOVI : 50- 57: lhvgf AlqkldE--A eaqrt HYPC_AZOVI : 50- 59: lhvgf AlqkldEaeA qrtla HYPC_AZOVI : 78- 83: aeaeq Aaqg--E--A p HYPC_ECOLI : 55- 62: vhvgf AmsvinE--A eardt HYPC_ECOLI : 55- 64: vhvgf AmsvinEaeA rdtld HYPC_RHILV : 52- 59: vgyal AkidpeE--A ertla HYPC_RHILV : 52- 59: vgyal Akidp-Ee-A ertla HYPC_RHILV : 64- 70: aertl Alir--Er-A mgdaa HYPC_RHOCA : 56- 63: ihvgf AmslidE--A eaart HYPC_RHOCA : 56- 65: ihvgf AmslidEaeA artle HYPC_RHOCA : 65- 71: ideae Aartl-E--A lrdlg HYPC_RHOCA : 66- 71: deaea Artl--E--A lrdlg HYPC_RHOCA : 71- 78: artle AlrdlgE--A qetla HYPC_RHOCA : 83- 89: aqetl Aqma--Eg-A aaleg HYPC_RHOCA : 83- 90: aqetl Aqma--EgaA alegr YFRC_PROVU : 56- 65: vhvgf AmsivnEqeA qetln YFRC_PROVU : 84- 93: eddvs AflygeEstA kra M 13: 10.3023 21( 11) A-L-x-[ACDGN] Occurences: 21(11) HOXL_ALCEU : 31- 34: rrvss ALvG dcqqg HOXL_ALCEU : 55- 58: rerid ALrA heida HOXL_AZOVI : 17- 20: capgr ALcG dengv HOXL_AZOVI : 64- 67: arire ALrA lqavq HOXL_AZOVI : 67- 70: realr ALqA vqagd HOXL_AZOVI : 78- 81: agdpa ALaG lfadl HUPF_RHILV : 64- 67: raidd ALaG laeav HUPF_RHOCA : 64- 67: aqisa ALgG lrslm HUPF_RHOCA : 98- 101: phlqa ALdA gktra HYBG_ECOLI : 34- 37: rdvni ALiC egnpa HYPC_ALCEU : 32- 35: ktisl ALmA davvg HYPC_AZOVI : 32- 35: ktinv ALlD dlkvg HYPC_AZOVI : 64- 67: aqrtl ALlA elgrl HYPC_ECOLI : 70- 73: rdtld ALqN mfdve HYPC_RHILV : 32- 35: kivst ALvD dvkvg HYPC_RHOCA : 20- 23: agrmm ALaD vsgvk HYPC_RHOCA : 71- 74: artle ALrD lgeaq HYPC_RHOCA : 91- 94: aegaa ALeG rg YFRC_PROVU : 20- 23: titen ALvD vcgvk YFRC_PROVU : 34- 37: revni ALvC egepd YFRC_PROVU : 71- 74: qetln ALmA mgeve N 14: 10.2558 16( 11) L-[AILPV]-x(4)-A Occurences: 16(11) HOXL_ALCEU : 43- 49: qgdwl LVfldsA rerid HOXL_AZOVI : 42- 48: apgdw LLvfldA areil HOXL_AZOVI : 43- 49: pgdwl LVfldaA reild HOXL_AZOVI : 92- 98: drepq LPphlqA qlppk HUPF_RHILV : 65- 71: aidda LAglaeA vegra HUPF_RHOCA : 43- 49: pgdwv LAflgaA revlt HUPF_RHOCA : 91- 97: arspq LPphlqA aldag HYBG_ECOLI : 50- 56: lgqwv LVhvgfA msiid HYPC_ALCEU : 31- 37: rktis LAlmadA vvgdy HYPC_AZOVI : 12- 18: vriee LLdeqsA vacig HYPC_AZOVI : 72- 78: aelgr LAeaeqA aqgea HYPC_ECOLI : 49- 55: vgqwv LVhvgfA msvin HYPC_RHILV : 12- 18: vqvke LLpdnmA kvtld HYPC_RHOCA : 50- 56: lghwa LIhvgfA mslid HYPC_RHOCA : 59- 65: gfams LIdeaeA artle YFRC_PROVU : 50- 56: igkwv LVhvgfA msivn O 15: 10.2227 17( 11) D-x(2)-[DEQRS]-A Occurences: 17(11) HOXL_ALCEU : 54- 58: areri DalRA heida HOXL_ALCEU : 66- 70: idatl DmlQA acwvl HOXL_AZOVI : 54- 58: areil DagRA arire HUPF_RHILV : 54- 58: airvl DadEA raidd HUPF_RHILV : 56- 60: rvlda DeaRA iddal HUPF_RHOCA : 76- 80: lmagg DlgDA fadle HYBG_ECOLI : 61- 65: amsii DedEA katld HYBG_ECOLI : 78- 82: rqmdy DitSA HYPC_ALCEU : 55- 59: aigki DpeEA ertlr HYPC_AZOVI : 14- 18: ieell DeqSA vacig HYPC_AZOVI : 55- 59: alqkl DeaEA qrtla HYPC_ECOLI : 13- 17: qirti DgnQA kvdvc HYPC_ECOLI : 66- 70: eaear DtlDA lqnmf HYPC_RHILV : 55- 59: alaki DpeEA ertla HYPC_RHOCA : 61- 65: amsli DeaEA artle HYPC_RHOCA : 74- 78: lealr DlgEA qetla YFRC_PROVU : 80- 84: mgeve DdvSA flyge P 16: 10.0279 18( 11) E-x(1,2)-A-x(2)-[DEST] Occurences: 18(11) HOXL_ALCEU : 60- 66: alrah EidAtlD mlqaa HOXL_ALCEU : 92- 98: hrrwp EdlAvlS nsrds HOXL_AZOVI : 34- 40: dtrlv EppApgD wllvf HUPF_RHILV : 14- 20: vvvgs EfiAqcE rhgai HUPF_RHILV : 57- 63: vldad EarAidD alagl HUPF_RHOCA : 56- 62: evltp EaaAqiS aalgg HYBG_ECOLI : 62- 68: msiid EdeAkaT ldalr HYBG_ECOLI : 64- 70: iided EakAtlD alrqm HYPC_ALCEU : 57- 62: gkidp Ee-AerT lrlfa HYPC_AZOVI : 56- 62: lqkld EaeAqrT lalla HYPC_AZOVI : 76- 82: rlaea EqaAqgE ap HYPC_ECOLI : 61- 67: msvin EaeArdT ldalq HYPC_RHILV : 57- 62: akidp Ee-AerT lalir HYPC_RHILV : 68- 73: lalir Er-AmgD aa HYPC_RHOCA : 62- 68: mslid EaeAarT lealr HYPC_RHOCA : 87- 93: laqma EgaAalE grg YFRC_PROVU : 18- 23: gktit En-AlvD vcgvk YFRC_PROVU : 62- 68: msivn EqeAqeT lnalm Q 17: 10.0210 18( 11) A-x(2,3)-D-x(3)-[AGLV] Occurences: 18(11) HOXL_ALCEU : 31- 39: rrvss AlvgDcqqG dwllv HOXL_ALCEU : 63- 70: aheid Atl-DmlqA acwvl HOXL_AZOVI : 17- 25: capgr AlcgDengV rwidt HOXL_AZOVI : 37- 44: lvepp Apg-DwllV fldaa HUPF_RHILV : 58- 66: ldade AraiDdalA glaea HUPF_RHILV : 60- 67: adear Aid-DalaG laeav HUPF_RHOCA : 36- 44: slvpe ArpgDwvlA flgaa HUPF_RHOCA : 73- 80: lrslm Agg-DlgdA fadle HYBG_ECOLI : 11- 19: pgqvl AvgeDihqL aqvev HYPC_ALCEU : 32- 40: ktisl AlmaDavvG dyviv HYPC_ALCEU : 37- 45: almad AvvgDyviV hvgya HYPC_AZOVI : 32- 39: ktinv All-DdlkV gdyvi HYPC_AZOVI : 32- 40: ktinv AlldDlkvG dyvil HYPC_ECOLI : 62- 70: svine AearDtldA lqnmf HYPC_RHILV : 32- 39: kivst Alv-DdvkV gdyvv HYPC_RHILV : 32- 40: kivst AlvdDvkvG dyvvl HYPC_RHILV : 52- 59: vgyal Aki-DpeeA ertla HYPC_RHOCA : 20- 27: agrmm Ala-DvsgV kravn HYPC_RHOCA : 71- 78: artle Alr-DlgeA qetla YFRC_PROVU : 20- 27: titen Alv-DvcgV krevn R 18: 8.3401 18( 11) L-x(5)-V Occurences: 18(11) HOXL_ALCEU : 68- 74: atldm LqaacwV lthpk HOXL_AZOVI : 65- 71: rirea LralqaV qagdp HUPF_RHILV : 46- 52: hllth LgsairV ldade HUPF_RHOCA : 27- 33: dgrpg LvdlslV pearp HUPF_RHOCA : 46- 52: wvlaf LgaareV ltpea HYBG_ECOLI : 45- 51: npadl LgqwvlV hvgfa HYPC_ALCEU : 33- 39: tisla LmadavV gdyvi HYPC_AZOVI : 13- 19: rieel LdeqsaV acigg HYPC_AZOVI : 25- 31: acigg LrktinV alldd HYPC_AZOVI : 33- 39: tinva LlddlkV gdyvi HYPC_AZOVI : 37- 43: alldd LkvgdyV ilhvg HYPC_ECOLI : 71- 77: dtlda LqnmfdV epdvg HYPC_RHILV : 3- 9: mc LaipvqV kellp HYPC_RHILV : 33- 39: ivsta LvddvkV gdyvv HYPC_RHOCA : 21- 27: grmma LadvsgV kravn YFRC_PROVU : 3- 9: mc LgipgqV vevgk YFRC_PROVU : 21- 27: itena LvdvcgV krevn YFRC_PROVU : 72- 78: etlna LmamgeV eddvs S 19: 7.8401 21( 11) R-x(3,4)-A Occurences: 21(11) HOXL_ALCEU : 26- 31: grger RrvssA lvgdc HOXL_ALCEU : 27- 31: rgerr Rvss-A lvgdc HOXL_ALCEU : 50- 55: fldsa ReridA lrahe HOXL_AZOVI : 8- 13: igipl RvlecA pgral HOXL_AZOVI : 50- 55: fldaa ReildA graar HOXL_AZOVI : 60- 64: agraa Rire-A lralq HOXL_AZOVI : 62- 67: raari RealrA lqavq HOXL_AZOVI : 66- 70: ireal Ralq-A vqagd HUPF_RHILV : 51- 55: lgsai Rvld-A deara HUPF_RHILV : 59- 64: dadea RaiddA lagla HUPF_RHOCA : 69- 73: alggl Rslm-A ggdlg HYBG_ECOLI : 29- 34: vcgik RdvniA liceg HYPC_ALCEU : 71- 76: faele RvqppA sepmh HYPC_AZOVI : 71- 75: laelg Rlae-A eqaaq HYPC_ECOLI : 65- 70: neaea RdtldA lqnmf HYPC_RHILV : 69- 74: alire RamgdA a HYPC_RHOCA : 17- 22: itdag RmmalA dvsgv HYPC_RHOCA : 29- 34: vsgvk RavnvA cvaeg HYPC_RHOCA : 67- 71: eaeaa Rtle-A lrdlg HYPC_RHOCA : 73- 78: tleal RdlgeA qetla YFRC_PROVU : 29- 34: vcgvk RevniA lvceg T 20: 7.8401 24( 11) L-x(2,3)-E Occurences: 24(11) HOXL_ALCEU : 56- 60: erida LrahE idatl HOXL_AZOVI : 7- 11: cigip LrvlE capgr HOXL_AZOVI : 18- 22: apgra LcgdE ngvrw HOXL_AZOVI : 86- 89: glfad Ldr-E pqlpp HOXL_AZOVI : 100- 104: hlqaq LppkE pt HUPF_RHILV : 53- 57: sairv LdadE araid HUPF_RHILV : 84- 88: mlfad LisrE pelpp HUPF_RHILV : 95- 98: elpph Lrg-E HUPF_RHOCA : 32- 35: lvdls Lvp-E arpgd HUPF_RHOCA : 53- 56: aarev Ltp-E aaaqi HYBG_ECOLI : 10- 14: vpgqv LavgE dihql HYBG_ECOLI : 19- 23: edihq LaqvE vcgik HYBG_ECOLI : 35- 38: dvnia Lic-E gnpad HYPC_ALCEU : 65- 68: ertlr Lfa-E lervq HYPC_AZOVI : 12- 15: vriee Lld-E qsava HYPC_AZOVI : 54- 58: falqk LdeaE aqrtl HYPC_AZOVI : 65- 68: qrtla Lla-E lgrla HYPC_AZOVI : 72- 76: aelgr LaeaE qaaqg HYPC_ECOLI : 84- 88: pdvga LlygE ek HYPC_ECOLI : 85- 88: dvgal Lyg-E ek HYPC_ECOLI : 85- 89: dvgal LygeE k HYPC_RHILV : 65- 68: ertla Lir-E ramgd HYPC_RHOCA : 59- 62: gfams Lid-E aeaar YFRC_PROVU : 35- 38: evnia Lvc-E gepdt YFRC_PROVU : 86- 89: dvsaf Lyg-E estak YFRC_PROVU : 86- 90: dvsaf LygeE stakr Number of patterns evaluated by Pratt:164 Total running time: 1 seconds