------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 18 sequences from file HTH_TETR_FAMILY PATTERN CONSERVATION: CM: min Nr of Seqs to Match 18 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename HTH_TETR_FAMILY.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: ACRR_ECOLI 215 BETI_ECOLI 195 BM3R_BACME 192 ENVR_ECOLI 220 MTRR_NEIGO 210 TCMR_STRGA 226 TER1_ECOLI 216 TER2_ECOLI 207 TER3_ECOLI 219 TER4_ECOLI 218 TER5_ECOLI 211 TETC_ECOLI 197 TTK_ECOLI 212 TTK_HAEIN 218 Y893_HAEIN 187 YBIH_ECOLI 103 YIXD_BACSU 191 YP23_STAAU 188 Pratt run started at Thu Feb 6 19:56:45 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 11.0102 33( 18) L-x(2,3)-A-x(0,2)-L 2: 10.5102 53( 18) L-x(1,3)-A-x(0,2)-L 3: 8.3401 37( 18) L-x-L 4: 8.3401 34( 18) A-x(2)-L 5: 8.3401 49( 18) A-x(2)-A 6: 8.3401 54( 18) A-x(5)-A 7: 8.3401 49( 18) L-x(4)-E 8: 7.8401 88( 18) L-x(1,2)-A 9: 7.8401 39( 18) I-x(2,3)-A 10: 7.8401 70( 18) E-x(0,1)-L 11: 7.8401 77( 18) E-x(2,3)-L 12: 7.8401 95( 18) E-x(1,2)-L 13: 7.8401 70( 18) R-x(1,2)-L 14: 7.8401 55( 18) I-x(2,3)-L 15: 7.8401 53( 18) I-x(4,5)-L 16: 7.8401 62( 18) I-x(3,4)-L 17: 7.8401 61( 18) A-x(1,2)-E 18: 7.8401 70( 18) A-x(2,3)-L 19: 7.8401 43( 18) A-x(1,2)-I 20: 7.8401 45( 18) D-x(0,1)-A Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 11.0102 33( 18) L-x(2,3)-A-x(0,2)-L B 2: 10.5102 53( 18) L-x(1,3)-A-x(0,2)-L C 3: 10.0946 31( 18) E-x(2,3)-L-x(2)-[AILP] D 4: 10.0783 40( 18) L-x(1,2)-A-x(2)-[AEQS] E 5: 9.4789 32( 18) I-x(3,4)-L-[ADEQST] F 6: 8.3401 37( 18) L-x-L G 7: 8.3401 34( 18) A-x(2)-L H 8: 8.3401 49( 18) A-x(2)-A I 9: 8.3401 54( 18) A-x(5)-A J 10: 8.3401 49( 18) L-x(4)-E K 11: 7.8401 39( 18) I-x(2,3)-A L 12: 7.8401 70( 18) E-x(0,1)-L M 13: 7.8401 95( 18) E-x(1,2)-L N 14: 7.8401 70( 18) R-x(1,2)-L O 15: 7.8401 55( 18) I-x(2,3)-L P 16: 7.8401 53( 18) I-x(4,5)-L Q 17: 7.8401 61( 18) A-x(1,2)-E R 18: 7.8401 70( 18) A-x(2,3)-L S 19: 7.8401 43( 18) A-x(1,2)-I T 20: 7.8401 45( 18) D-x(0,1)-A Best patterns with alignements: fitness hits(seqs) Pattern A 1: 11.0102 33( 18) L-x(2,3)-A-x(0,2)-L Occurences: 33(18) ACRR_ECOLI : 17- 21: trqhi Ldv-A--L rlfsq ACRR_ECOLI : 17- 23: trqhi Ldv-AlrL fsqqg BETI_ECOLI : 14- 19: irrrq Lid-At-L eaine BETI_ECOLI : 68- 73: ditsq Lrd-Av-L nrlha BETI_ECOLI : 164- 170: alidg LwlrAa-L sgkpl BETI_ECOLI : 166- 170: idglw Lra-A--L sgkpl BM3R_BACME : 145- 150: gvirn LpenA--L iailf BM3R_BACME : 184- 188: gvees Lwa-A--L srqs ENVR_ECOLI : 186- 193: magyd LykqApaL vdnvl MTRR_NEIGO : 15- 20: ktkeh LmlaA--L etfyr MTRR_NEIGO : 15- 20: ktkeh Lml-Aa-L etfyr MTRR_NEIGO : 57- 61: knked Lfd-A--L fqric TCMR_STRGA : 32- 37: rtrdq LireA--L elfla TCMR_STRGA : 32- 39: rtrdq LireAleL flaqg TER1_ECOLI : 51- 55: rnkra Lld-A--L aeaml TER1_ECOLI : 55- 60: allda Lae-Am-L aenhs TER2_ECOLI : 51- 55: knkra Lld-A--L aieml TER2_ECOLI : 127- 131: qqgfs Len-A--L yalsa TER2_ECOLI : 169- 176: dsmpp LlrqAieL fdhqg TER2_ECOLI : 170- 176: smppl Lrq-AieL fdhqg TER3_ECOLI : 51- 55: knkra Lld-A--L aeaml TER3_ECOLI : 55- 60: allda Lae-Am-L tinht TER4_ECOLI : 51- 55: knkra Lld-A--L aveil TER4_ECOLI : 169- 174: enlpp LlreA--L qimds TER4_ECOLI : 170- 174: nlppl Lre-A--L qimds TER5_ECOLI : 55- 60: tlmnm Lse-Ai-L akhht TER5_ECOLI : 79- 84: swqqf LqenA--L sfrka TETC_ECOLI : 18- 25: styqs LvnsAriL fvekg TTK_ECOLI : 30- 35: rreei LqslA--L mless TTK_ECOLI : 30- 37: rreei LqslAlmL essdg TTK_ECOLI : 123- 128: gltri LtghA--L mfeqd TTK_ECOLI : 206- 211: darwp Lia-Aq-L q TTK_HAEIN : 129- 134: gltrv LtghA--L mfeea Y893_HAEIN : 152- 158: lflls Lkt-AinL asdak YBIH_ECOLI : 17- 22: qakkq LiaaA--L aqfge YBIH_ECOLI : 17- 22: qakkq Lia-Aa-L aqfge YIXD_BACSU : 156- 160: fvmlk Lyi-A--L ifdwe YP23_STAAU : 8- 14: lkdki Lgv-AkeL fikng B 2: 10.5102 53( 18) L-x(1,3)-A-x(0,2)-L Occurences: 53(18) ACRR_ECOLI : 17- 21: trqhi Ldv-A--L rlfsq ACRR_ECOLI : 17- 23: trqhi Ldv-AlrL fsqqg ACRR_ECOLI : 154- 158: ieakm Lp--Ad-L mtrra BETI_ECOLI : 14- 19: irrrq Lid-At-L eaine BETI_ECOLI : 68- 73: ditsq Lrd-Av-L nrlha BETI_ECOLI : 76- 79: avlnr Lh--A--L pqgsa BETI_ECOLI : 157- 160: eagyg La--A--L idglw BETI_ECOLI : 164- 170: alidg LwlrAa-L sgkpl BETI_ECOLI : 166- 170: idglw Lra-A--L sgkpl BETI_ECOLI : 166- 170: idglw Lr--Aa-L sgkpl BM3R_BACME : 145- 150: gvirn LpenA--L iailf BM3R_BACME : 150- 154: lpena Li--Ai-L fgsfm BM3R_BACME : 184- 188: gvees Lwa-A--L srqs BM3R_BACME : 184- 188: gvees Lw--Aa-L srqs ENVR_ECOLI : 77- 81: liqeh Lt--Ag-L ehdpf ENVR_ECOLI : 186- 193: magyd LykqApaL vdnvl MTRR_NEIGO : 15- 20: ktkeh LmlaA--L etfyr MTRR_NEIGO : 15- 20: ktkeh Lml-Aa-L etfyr MTRR_NEIGO : 17- 20: kehlm La--A--L etfyr MTRR_NEIGO : 57- 61: knked Lfd-A--L fqric TCMR_STRGA : 32- 37: rtrdq LireA--L elfla TCMR_STRGA : 32- 39: rtrdq LireAleL flaqg TCMR_STRGA : 87- 90: ideaf La--A--L evrpa TCMR_STRGA : 140- 145: ertpg Ll--AeyL rrsee TCMR_STRGA : 199- 202: radtd Le--A--L svafe TER1_ECOLI : 51- 55: rnkra Lld-A--L aeaml TER1_ECOLI : 52- 55: nkral Ld--A--L aeaml TER1_ECOLI : 55- 60: allda Lae-Am-L aenhs TER2_ECOLI : 51- 55: knkra Lld-A--L aieml TER2_ECOLI : 52- 55: nkral Ld--A--L aieml TER2_ECOLI : 127- 131: qqgfs Len-A--L yalsa TER2_ECOLI : 131- 134: slena Ly--A--L savgh TER2_ECOLI : 169- 176: dsmpp LlrqAieL fdhqg TER2_ECOLI : 170- 176: smppl Lrq-AieL fdhqg TER3_ECOLI : 51- 55: knkra Lld-A--L aeaml TER3_ECOLI : 52- 55: nkral Ld--A--L aeaml TER3_ECOLI : 55- 60: allda Lae-Am-L tinht TER4_ECOLI : 51- 55: knkra Lld-A--L aveil TER4_ECOLI : 52- 55: nkral Ld--A--L aveil TER4_ECOLI : 142- 146: vshft Lg--Av-L eqqeh TER4_ECOLI : 169- 174: enlpp LlreA--L qimds TER4_ECOLI : 170- 174: nlppl Lre-A--L qimds TER4_ECOLI : 201- 204: gfevq Lt--A--L lqivg TER4_ECOLI : 201- 205: gfevq Lt--Al-L qivgg TER5_ECOLI : 55- 60: tlmnm Lse-Ai-L akhht TER5_ECOLI : 79- 84: swqqf LqenA--L sfrka TER5_ECOLI : 142- 146: ishft Lg--Av-L eeqat TETC_ECOLI : 18- 25: styqs LvnsAriL fvekg TTK_ECOLI : 30- 35: rreei LqslA--L mless TTK_ECOLI : 30- 37: rreei LqslAlmL essdg TTK_ECOLI : 123- 128: gltri LtghA--L mfeqd TTK_ECOLI : 206- 211: darwp Lia-Aq-L q TTK_ECOLI : 206- 211: darwp Li--AaqL q TTK_HAEIN : 129- 134: gltrv LtghA--L mfeea Y893_HAEIN : 138- 142: aqkag Ll--Ae-L sedil Y893_HAEIN : 152- 158: lflls Lkt-AinL asdak YBIH_ECOLI : 17- 22: qakkq LiaaA--L aqfge YBIH_ECOLI : 17- 22: qakkq Lia-Aa-L aqfge YBIH_ECOLI : 17- 22: qakkq Li--AaaL aqfge YIXD_BACSU : 29- 33: attmd Lv--Ak-L anvgk YIXD_BACSU : 85- 89: nvhra Lf--Ai-L efrkt YIXD_BACSU : 156- 160: fvmlk Lyi-A--L ifdwe YP23_STAAU : 8- 14: lkdki Lgv-AkeL fikng C 3: 10.0946 31( 18) E-x(2,3)-L-x(2)-[AILP] Occurences: 31(18) ACRR_ECOLI : 176- 182: isglm Enw-LfaP qsfdl ACRR_ECOLI : 200- 206: vaill Emy-LlcP tlrnp BETI_ECOLI : 85- 91: pqgsa Eqr-LqaI vggnf BM3R_BACME : 147- 153: irnlp Ena-LiaI lfgsf BM3R_BACME : 181- 187: lltgv Ees-LwaA lsrqs ENVR_ECOLI : 61- 67: tqlfn Emw-LqqP slrel MTRR_NEIGO : 13- 20: alktk EhlmLaaL etfyr TCMR_STRGA : 35- 42: dqlir EaleLflA qgyeh TCMR_STRGA : 72- 79: hfask EevaLtpI saide TCMR_STRGA : 73- 79: faske Eva-LtpI saide TCMR_STRGA : 84- 90: isaid Eaf-LaaL evrpa TCMR_STRGA : 152- 158: rseem Egr-LarI iaare TCMR_STRGA : 207- 213: lsvaf Esa-LdsL rpelf TER1_ECOLI : 163- 170: rggtv EqapLspL lraai TER1_ECOLI : 188- 194: pdaaf Eqg-LavI vdgla TER2_ECOLI : 114- 120: qyetl Enq-LafL cqqgf TER2_ECOLI : 128- 134: qgfsl Ena-LyaL savgh TER2_ECOLI : 183- 190: dhqga EpafLfgL eliic TER3_ECOLI : 191- 197: pdaaf Erg-LalI iggle TER4_ECOLI : 183- 190: dsddg EqafLhgL eslir TER4_ECOLI : 198- 204: lirgf Evq-LtaL lqivg TER5_ECOLI : 114- 120: qfeqa Eaq-LrcL cdagf TER5_ECOLI : 128- 134: agfsv Eea-LfiL qsish TETC_ECOLI : 94- 100: lesif Ehy-LdyI idnnk TETC_ECOLI : 123- 130: gwnel EkisLeyI tgkvn TTK_ECOLI : 27- 33: krnrr Eei-LqsL almle TTK_HAEIN : 87- 94: liehi EstlLsrI tasmr Y893_HAEIN : 144- 150: laels Edi-LflL slkta YBIH_ECOLI : 56- 63: yfgsk EdlyLacA qwiad YIXD_BACSU : 121- 128: viqkm ErsiLsyI kskie YP23_STAAU : 47- 54: hfktk EnlfLeiL niees D 4: 10.0783 40( 18) L-x(1,2)-A-x(2)-[AEQS] Occurences: 40(18) ACRR_ECOLI : 179- 184: lmenw Lf-ApqS fdlkk BETI_ECOLI : 14- 20: irrrq LidAtlE ainev BETI_ECOLI : 19- 24: lidat Le-AinE vgmhd BETI_ECOLI : 76- 81: avlnr Lh-AlpQ gsaeq BETI_ECOLI : 166- 171: idglw Lr-AalS gkpld BM3R_BACME : 184- 189: gvees Lw-AalS rqs ENVR_ECOLI : 77- 82: liqeh Lt-AglE hdpfq ENVR_ECOLI : 144- 149: tlrev Lq-AcqQ qgcva MTRR_NEIGO : 15- 21: ktkeh LmlAalE tfyrk MTRR_NEIGO : 57- 63: knked LfdAlfQ ricdd TCMR_STRGA : 202- 208: tdlea LsvAfeS aldsl TER1_ECOLI : 51- 57: rnkra LldAlaE amlae TER1_ECOLI : 52- 57: nkral Ld-AlaE amlae TER1_ECOLI : 55- 61: allda LaeAmlA enhst TER1_ECOLI : 120- 126: aqlrf LceAgfS agdav TER1_ECOLI : 171- 177: plspl LraAidA fdeag TER2_ECOLI : 127- 133: qqgfs LenAlyA lsavg TER2_ECOLI : 131- 136: slena Ly-AlsA vghft TER3_ECOLI : 51- 57: knkra LldAlaE amlti TER3_ECOLI : 52- 57: nkral Ld-AlaE amlti TER3_ECOLI : 120- 126: aqlrf LcdAgfS agdat TER4_ECOLI : 68- 73: hhdys Lp-AagE swqsf TER4_ECOLI : 68- 74: hhdys LpaAgeS wqsfl TER4_ECOLI : 131- 136: slrdg Ly-AisA vshft TER4_ECOLI : 142- 147: vshft Lg-AvlE qqeht TER4_ECOLI : 201- 206: gfevq Lt-AllQ ivggd TER5_ECOLI : 55- 61: tlmnm LseAilA khhtr TER5_ECOLI : 120- 126: aqlrc LcdAgfS veeal TER5_ECOLI : 142- 147: ishft Lg-AvlE eqatn TETC_ECOLI : 147- 152: iqenq Lk-AydS dvlkn TTK_ECOLI : 206- 212: darwp LiaAqlQ TTK_HAEIN : 141- 146: feeaq Lq-ArvA qffdr Y893_HAEIN : 31- 37: nqlsm LklAkeA nvaag Y893_HAEIN : 138- 143: aqkag Ll-AelS edilf YBIH_ECOLI : 17- 23: qakkq LiaAalA qfgey YBIH_ECOLI : 58- 64: gsked LylAcaQ wiadf YBIH_ECOLI : 84- 89: eeaer Lf-AqpQ pdraa YIXD_BACSU : 10- 16: rkkli LeaAtkS ftqfg YIXD_BACSU : 29- 34: attmd Lv-AklA nvgkg YIXD_BACSU : 85- 90: nvhra Lf-AilE frkth YP23_STAAU : 95- 101: eyyyp LqnAiiE fytey E 5: 9.4789 32( 18) I-x(3,4)-L-[ADEQST] Occurences: 32(18) ACRR_ECOLI : 70- 76: lsesn IgeleLE yqakf ACRR_ECOLI : 92- 98: svlre IlihvLE stvte BETI_ECOLI : 15- 20: rrrql Idat-LE ainev BM3R_BACME : 69- 74: eflqc Iesg-LA nerdg BM3R_BACME : 165- 171: evyem IendyLS ltdel ENVR_ECOLI : 73- 78: slrel Iqeh-LT agleh MTRR_NEIGO : 140- 145: iwrek Itav-LT eaven MTRR_NEIGO : 166- 171: tavif Ikst-LD gliwr MTRR_NEIGO : 196- 202: priig ImmdnLE nhpcl TCMR_STRGA : 33- 38: trdql Irea-LE lflaq TCMR_STRGA : 82- 88: tpisa IdeafLA alevr TER1_ECOLI : 10- 15: qpntv Iraa-LD llnev TER1_ECOLI : 194- 199: qglav Ivdg-LA krrlv TER2_ECOLI : 10- 15: dkskv Insa-LE llnev TER2_ECOLI : 193- 198: fglel Iicg-LE kqlkc TER3_ECOLI : 10- 15: qreav Irta-LE llndv TER3_ECOLI : 197- 202: rglal Iigg-LE kmrlt TER4_ECOLI : 10- 15: nresv Idaa-LE llnet TER5_ECOLI : 10- 15: slddv Isma-LT lldse TETC_ECOLI : 92- 98: sales IfehyLD yiidn TETC_ECOLI : 117- 123: evmpi IgwneLE kisle TTK_ECOLI : 29- 34: nrree Ilqs-LA lmles TTK_ECOLI : 46- 52: dgsqr IttakLA asvgv TTK_ECOLI : 207- 212: arwpl Iaaq-LQ TTK_HAEIN : 86- 92: alieh IestlLS ritas TTK_HAEIN : 108- 113: qtmnr Ihdi-LQ tildf TTK_HAEIN : 111- 117: nrihd IlqtiLD farkn Y893_HAEIN : 91- 96: qmwkn Iwyf-LQ enpti Y893_HAEIN : 146- 151: elsed Ilfl-LS lktai YBIH_ECOLI : 18- 23: akkql Iaaa-LA qfgey YIXD_BACSU : 176- 181: ldket Iagl-LE lyvvk YP23_STAAU : 181- 187: nkfsq IflngLS k F 6: 8.3401 37( 18) L-x-L Occurences: 37(18) ACRR_ECOLI : 21- 23: ildva LrL fsqqg ACRR_ECOLI : 73- 75: snige LeL eyqak ACRR_ECOLI : 133- 135: qaqrn LcL esydr BETI_ECOLI : 164- 166: alidg LwL raals BM3R_BACME : 16- 18: ifsas LlL faerg BM3R_BACME : 170- 172: iendy LsL tdell ENVR_ECOLI : 157- 159: cvann LdL dvvmi MTRR_NEIGO : 15- 17: ktkeh LmL aalet MTRR_NEIGO : 112- 114: kfhni LfL kceht TCMR_STRGA : 37- 39: lirea LeL flaqg TCMR_STRGA : 39- 41: reale LfL aqgye TER1_ECOLI : 14- 16: viraa LdL lnevg TER2_ECOLI : 14- 16: vinsa LeL lnevg TER2_ECOLI : 190- 192: aflfg LeL iicgl TER3_ECOLI : 14- 16: virta LeL lndvg TER3_ECOLI : 194- 196: aferg LaL iiggl TER4_ECOLI : 14- 16: vidaa LeL lnetg TER5_ECOLI : 4- 6: mar LsL ddvis TER5_ECOLI : 14- 16: visma LtL ldseg TETC_ECOLI : 192- 194: yrgfl LsL kdk TTK_ECOLI : 33- 35: eilqs LaL mless TTK_ECOLI : 35- 37: lqsla LmL essdg TTK_ECOLI : 90- 92: itrin LiL kdekd TTK_ECOLI : 102- 104: dttar LrL ivlll TTK_ECOLI : 107- 109: lrliv LlL lgfge TTK_ECOLI : 108- 110: rlivl LlL gfger TTK_HAEIN : 6- 8: mveeq LsL sgvee Y893_HAEIN : 31- 33: nqlsm LkL akean Y893_HAEIN : 147- 149: lsedi LfL lslkt Y893_HAEIN : 150- 152: dilfl LsL ktain YBIH_ECOLI : 58- 60: gsked LyL acaqw YBIH_ECOLI : 98- 100: aaire LiL rac YIXD_BACSU : 8- 10: idrkk LiL eaatk YIXD_BACSU : 154- 156: tafvm LkL yiali YIXD_BACSU : 180- 182: tiagl LeL yvvkg YP23_STAAU : 49- 51: ktken LfL eilni YP23_STAAU : 85- 87: ylyne LsL tteyy G 7: 8.3401 34( 18) A-x(2)-L Occurences: 34(18) ACRR_ECOLI : 20- 23: hildv AlrL fsqqg ACRR_ECOLI : 151- 154: khcie AkmL padlm ACRR_ECOLI : 196- 199: ardyv AilL emyll BETI_ECOLI : 180- 183: ldktr AnsL trhfi BM3R_BACME : 14- 17: kaifs AslL lfaer ENVR_ECOLI : 7- 10: akrtk AeaL ktrqe ENVR_ECOLI : 154- 157: qqgcv AnnL dldvv ENVR_ECOLI : 190- 193: dlykq ApaL vdnvl MTRR_NEIGO : 154- 157: enqdl AddL dketa TCMR_STRGA : 36- 39: qlire AleL flaqg TCMR_STRGA : 142- 145: tpgll AeyL rrsee TER1_ECOLI : 13- 16: tvira AldL lnevg TER1_ECOLI : 31- 34: ttrkl AerL gvqqp TER2_ECOLI : 13- 16: kvins AleL lnevg TER2_ECOLI : 31- 34: ttrkl AqkL gveqp TER2_ECOLI : 173- 176: pllrq AieL fdhqg TER3_ECOLI : 13- 16: avirt AleL lndvg TER3_ECOLI : 31- 34: ttrrl AerL gvqqp TER4_ECOLI : 13- 16: svida AleL lnetg TER4_ECOLI : 31- 34: ttrkl AqkL gieqp TER5_ECOLI : 13- 16: dvism AltL ldseg TER5_ECOLI : 31- 34: ttrkl AqsL kieqp TER5_ECOLI : 163- 166: hvida AppL lqeaf TETC_ECOLI : 22- 25: slvns AriL fvekg TETC_ECOLI : 170- 173: hiaih AknL kelad TTK_ECOLI : 34- 37: ilqsl AlmL essdg TTK_ECOLI : 208- 211: rwpli AaqL q TTK_HAEIN : 179- 182: derii AshL vtlce Y893_HAEIN : 136- 139: hqaqk AglL aelse Y893_HAEIN : 155- 158: lslkt AinL asdak YBIH_ECOLI : 19- 22: kkqli AaaL aqfge YBIH_ECOLI : 81- 84: phaee AerL faqpq YIXD_BACSU : 177- 180: dketi AglL elyvv YP23_STAAU : 11- 14: kilgv AkeL fikng H 8: 8.3401 49( 18) A-x(2)-A Occurences: 49(18) ACRR_ECOLI : 38- 41: slgei AkaA gvtrg BETI_ECOLI : 30- 33: vgmhd AtiA qiarr BETI_ECOLI : 33- 36: hdati AqiA rragv BETI_ECOLI : 36- 39: tiaqi ArrA gvstg BETI_ECOLI : 105- 108: qvssa AmkA wlafw BETI_ECOLI : 108- 111: saamk AwlA fwass BETI_ECOLI : 111- 114: mkawl AfwA ssmhq BETI_ECOLI : 150- 153: lpreq AqeA gygla BM3R_BACME : 33- 36: tmpmi AenA kvgag BM3R_BACME : 149- 152: nlpen AliA ilfgs ENVR_ECOLI : 22- 25: ietai AqfA qhgvs ENVR_ECOLI : 38- 41: tlndi AdaA nvtrg MTRR_NEIGO : 37- 40: slnei AqaA gvtrg MTRR_NEIGO : 74- 77: ienci AqdA adaeg MTRR_NEIGO : 77- 80: ciaqd AadA eggsw MTRR_NEIGO : 124- 127: teqna AviA iarkh TCMR_STRGA : 85- 88: saide AflA alevr TCMR_STRGA : 106- 109: qamsg AfrA vlgrv TER1_ECOLI : 58- 61: dalae AmlA enhst TER1_ECOLI : 89- 92: rsfrq AllA yrdga TER1_ECOLI : 127- 130: eagfs AgdA vnalm TER1_ECOLI : 130- 133: fsagd AvnA lmtis TER1_ECOLI : 174- 177: pllra AidA fdeag TER2_ECOLI : 130- 133: fslen AlyA lsavg TER2_ECOLI : 133- 136: enaly AlsA vghft TER2_ECOLI : 182- 185: fdhqg AepA flfgl TER3_ECOLI : 89- 92: csfrr AllA yrdga TER3_ECOLI : 127- 130: dagfs AgdA tyalm TER3_ECOLI : 130- 133: fsagd AtyA lmais TER3_ECOLI : 133- 136: gdaty AlmA isyft TER3_ECOLI : 150- 153: vleqq AseA daeer TER4_ECOLI : 133- 136: rdgly AisA vshft TER5_ECOLI : 58- 61: nmlse AilA khhtr TER5_ECOLI : 179- 182: qarts AemA fhfgl TETC_ECOLI : 167- 170: wfmhi AihA knlke TTK_ECOLI : 49- 52: qritt AklA asvgv TTK_HAEIN : 55- 58: ermtt ArlA kevgv TTK_HAEIN : 143- 146: eaqlq ArvA qffdr Y893_HAEIN : 34- 37: smlkl AkeA nvaag Y893_HAEIN : 37- 40: klake AnvA agtiy Y893_HAEIN : 133- 136: lfchq AqkA gllae Y893_HAEIN : 159- 162: tainl AsdA kfidf YBIH_ECOLI : 20- 23: kqlia AalA qfgey YBIH_ECOLI : 38- 41: ttrei AaqA gqnia YBIH_ECOLI : 78- 81: qfrph AeeA erlfa YIXD_BACSU : 31- 34: tmdlv AklA nvgkg YIXD_BACSU : 67- 70: emkqk AdeA mepsl YIXD_BACSU : 84- 87: envhr AlfA ilefr YP23_STAAU : 152- 155: avski AanA vngiv I 9: 8.3401 54( 18) A-x(5)-A Occurences: 54(18) ACRR_ECOLI : 41- 47: eiaka AgvtrgA iywhf BETI_ECOLI : 30- 36: vgmhd AtiaqiA rragv BETI_ECOLI : 33- 39: hdati AqiarrA gvstg BETI_ECOLI : 78- 84: lnrlh AlpqgsA eqrlq BETI_ECOLI : 84- 90: lpqgs AeqrlqA ivggn BETI_ECOLI : 105- 111: qvssa AmkawlA fwass BETI_ECOLI : 108- 114: saamk AwlafwA ssmhq BETI_ECOLI : 153- 159: eqaqe AgyglaA lidgl BM3R_BACME : 14- 20: kaifs AslllfA ergfd BM3R_BACME : 20- 26: slllf AergfdA ttmpm ENVR_ECOLI : 41- 47: diada AnvtrgA iywhf MTRR_NEIGO : 40- 46: eiaqa AgvtrgA lywhf MTRR_NEIGO : 74- 80: ienci AqdaadA eggsw MTRR_NEIGO : 123- 129: hteqn AaviaiA rkhqa TCMR_STRGA : 36- 42: qlire AlelflA qgyeh TCMR_STRGA : 69- 75: ffrhf AskeevA ltpis TCMR_STRGA : 75- 81: skeev AltpisA ideaf TCMR_STRGA : 89- 95: eafla AlevrpA genpl TCMR_STRGA : 195- 201: ewylr AdtdleA lsvaf TER1_ECOLI : 50- 56: frnkr AlldalA eamla TER1_ECOLI : 83- 89: fltgn ArsfrqA llayr TER1_ECOLI : 101- 107: garih AgtrpgA pqmet TER1_ECOLI : 107- 113: gtrpg ApqmetA daqlr TER1_ECOLI : 127- 133: eagfs AgdavnA lmtis TER1_ECOLI : 144- 150: yftvg AvleeqA gdses TER1_ECOLI : 186- 192: agpda AfeqglA vivdg TER2_ECOLI : 50- 56: vknkr AlldalA iemld TER2_ECOLI : 83- 89: flrnn AksfrcA llshr TER2_ECOLI : 130- 136: fslen AlyalsA vghft TER3_ECOLI : 50- 56: fknkr AlldalA eamlt TER3_ECOLI : 83- 89: flkgn AcsfrrA llayr TER3_ECOLI : 101- 107: garih AgtrpaA pqmek TER3_ECOLI : 107- 113: gtrpa ApqmekA daqlr TER3_ECOLI : 127- 133: dagfs AgdatyA lmais TER3_ECOLI : 130- 136: fsagd AtyalmA isyft TER3_ECOLI : 144- 150: yftvg AvleqqA seada TER3_ECOLI : 189- 195: ggpda AferglA liigg TER4_ECOLI : 50- 56: vknkr AlldalA veila TER4_ECOLI : 83- 89: flrnn AmsfrrA llryr TER4_ECOLI : 154- 160: qehta AltdrpA apden TER5_ECOLI : 83- 89: flqen AlsfrkA llvhr TER5_ECOLI : 144- 150: hftlg AvleeqA tnqie TETC_ECOLI : 43- 49: eisgk AlvtkgA fyhhf TTK_ECOLI : 202- 208: tddfd ArwpliA aqlq TTK_HAEIN : 133- 139: vltgh AlmfeeA qlqar Y893_HAEIN : 9- 15: aktdl AeqifsA tdrlm Y893_HAEIN : 15- 21: eqifs AtdrlmA regln Y893_HAEIN : 34- 40: smlkl AkeanvA agtiy YBIH_ECOLI : 13- 19: ikgeq AkkqliA aalaq YBIH_ECOLI : 32- 38: eygmn AttreiA aqagq YBIH_ECOLI : 41- 47: eiaaq AgqniaA ityyf YBIH_ECOLI : 61- 67: edlyl AcaqwiA dfige YIXD_BACSU : 106- 112: ifqen AeigtmA vqevi YP23_STAAU : 147- 153: indvn AvskiaA navng J 10: 8.3401 49( 18) L-x(4)-E Occurences: 49(18) ACRR_ECOLI : 86- 91: fpgdp LsvlrE ilihv ACRR_ECOLI : 93- 98: vlrei LihvlE stvte ACRR_ECOLI : 145- 150: rieqt LkhciE akmlp BETI_ECOLI : 19- 24: lidat LeainE vgmhd BM3R_BACME : 16- 21: ifsas LllfaE rgfda BM3R_BACME : 170- 175: iendy LsltdE lltgv BM3R_BACME : 176- 181: sltde LltgvE eslwa BM3R_BACME : 177- 182: ltdel LtgveE slwaa ENVR_ECOLI : 10- 15: tkaea LktrqE lieta ENVR_ECOLI : 77- 82: liqeh LtaglE hdpfq ENVR_ECOLI : 113- 118: allki LyhkcE fndem MTRR_NEIGO : 92- 97: vfrht LlhffE rlqsn MTRR_NEIGO : 112- 117: kfhni LflkcE hteqn MTRR_NEIGO : 144- 149: kitav LteavE nqdla TCMR_STRGA : 41- 46: alelf LaqgyE httve TCMR_STRGA : 145- 150: llaey LrrseE megrl TCMR_STRGA : 202- 207: tdlea LsvafE salds TER1_ECOLI : 14- 19: viraa LdllnE vgvdg TER1_ECOLI : 52- 57: nkral LdalaE amlae TER1_ECOLI : 117- 122: tadaq LrflcE agfsa TER2_ECOLI : 14- 19: vinsa LellnE vgieg TER2_ECOLI : 142- 147: vghft LgcvlE dqehq TER2_ECOLI : 170- 175: smppl LrqaiE lfdhq TER3_ECOLI : 52- 57: nkral LdalaE amlti TER3_ECOLI : 214- 219: ndiev LknvdE TER4_ECOLI : 14- 19: vidaa LellnE tgidg TER4_ECOLI : 68- 73: hhdys LpaagE swqsf TER4_ECOLI : 117- 122: tvetq LrfmtE ngfsl TER4_ECOLI : 142- 147: vshft LgavlE qqeht TER4_ECOLI : 193- 198: hgles LirgfE vqlta TER5_ECOLI : 142- 147: ishft LgavlE eqatn TETC_ECOLI : 89- 94: ngwsa LesifE hyldy TETC_ECOLI : 107- 112: dnnkn LipiqE vmpii TTK_ECOLI : 33- 38: eilqs LalmlE ssdgs TTK_ECOLI : 76- 81: rmfds LiefiE dslit TTK_ECOLI : 90- 95: itrin LilkdE kdtta TTK_ECOLI : 109- 114: livll LlgfgE rnpgl TTK_ECOLI : 142- 147: grinq LferiE aqlrq TTK_HAEIN : 8- 13: eeqls LsgveE iapki TTK_HAEIN : 82- 87: kmfea LiehiE stlls TTK_HAEIN : 182- 187: iiash LvtlcE gqfmr Y893_HAEIN : 31- 36: nqlsm LklakE anvaa Y893_HAEIN : 139- 144: qkagl LaelsE dilfl Y893_HAEIN : 174- 179: lkpei LesviE rswra YBIH_ECOLI : 22- 27: liaaa LaqfgE ygmna YIXD_BACSU : 85- 90: nvhra LfailE frkth YIXD_BACSU : 160- 165: klyia LifdwE kqhpp YP23_STAAU : 8- 13: lkdki LgvakE lfikn YP23_STAAU : 85- 90: ylyne LslttE yyypl K 11: 7.8401 39( 18) I-x(2,3)-A Occurences: 39(18) ACRR_ECOLI : 16- 20: etrqh IldvA lrlfs ACRR_ECOLI : 37- 40: tslge Iak-A agvtr ACRR_ECOLI : 37- 41: tslge IakaA gvtrg BETI_ECOLI : 32- 36: mhdat IaqiA rragv BETI_ECOLI : 35- 39: atiaq IarrA gvstg BM3R_BACME : 11- 14: tkqka Ifs-A slllf BM3R_BACME : 32- 36: ttmpm IaenA kvgag ENVR_ECOLI : 17- 20: trqel Iet-A iaqfa ENVR_ECOLI : 21- 25: lieta IaqfA qhgvs ENVR_ECOLI : 37- 40: ttlnd Iad-A anvtr ENVR_ECOLI : 37- 41: ttlnd IadaA nvtrg ENVR_ECOLI : 165- 169: dvvmi IidgA fsgiv ENVR_ECOLI : 166- 169: vvmii Idg-A fsgiv MTRR_NEIGO : 36- 39: tslne Iaq-A agvtr MTRR_NEIGO : 36- 40: tslne IaqaA gvtrg MTRR_NEIGO : 73- 77: dienc IaqdA adaeg MTRR_NEIGO : 126- 129: qnaav Iai-A rkhqa TCMR_STRGA : 33- 36: trdql Ire-A lelfl TCMR_STRGA : 53- 56: ttveq Iae-A vevhp TCMR_STRGA : 82- 85: tpisa Ide-A flaal TCMR_STRGA : 158- 161: grlar Iia-A regvd TER1_ECOLI : 10- 13: qpntv Ira-A ldlln TER2_ECOLI : 10- 13: dkskv Ins-A lelln TER3_ECOLI : 10- 13: qreav Irt-A lelln TER4_ECOLI : 10- 13: nresv Ida-A lelln TER5_ECOLI : 10- 13: slddv Ism-A ltlld TER5_ECOLI : 160- 163: ennhv Ida-A ppllq TETC_ECOLI : 39- 43: vside IsgkA lvtkg TETC_ECOLI : 70- 74: ykqql ImidA yittk TETC_ECOLI : 166- 170: gwfmh IaihA knlke TTK_ECOLI : 46- 49: dgsqr Itt-A klaas TTK_HAEIN : 115- 119: dilqt IldfA rknpg Y893_HAEIN : 12- 15: dlaeq Ifs-A tdrlm Y893_HAEIN : 156- 159: slkta Inl-A sdakf YBIH_ECOLI : 18- 21: akkql Iaa-A laqfg YBIH_ECOLI : 37- 41: attre IaaqA gqnia YBIH_ECOLI : 99- 102: airel Ilr-A c YIXD_BACSU : 9- 12: drkkl Ile-A atksf YIXD_BACSU : 9- 13: drkkl IleaA tksft YIXD_BACSU : 108- 112: qenae IgtmA vqevi YIXD_BACSU : 136- 140: kiedg IksgA ikpcd YP23_STAAU : 7- 11: nlkdk IlgvA kelfi YP23_STAAU : 151- 155: navsk IaanA vngiv L 12: 7.8401 70( 18) E-x(0,1)-L Occurences: 70(18) ACRR_ECOLI : 64- 65: fseiw E-L sesni ACRR_ECOLI : 72- 73: esnig E-L eleyq ACRR_ECOLI : 74- 75: nigel E-L eyqak ACRR_ECOLI : 91- 93: lsvlr EiL ihvle BETI_ECOLI : 144- 145: sefrr E-L preqa BM3R_BACME : 51- 53: yfknk EsL vnelf BM3R_BACME : 56- 57: eslvn E-L fqqhv BM3R_BACME : 64- 66: qqhvn EfL qcies BM3R_BACME : 175- 176: lsltd E-L ltgve BM3R_BACME : 175- 177: lsltd ElL tgvee BM3R_BACME : 182- 184: ltgve EsL waals ENVR_ECOLI : 8- 10: krtka EaL ktrqe ENVR_ECOLI : 15- 16: lktrq E-L ietai ENVR_ECOLI : 71- 72: qpslr E-L iqehl ENVR_ECOLI : 75- 77: reliq EhL tagle ENVR_ECOLI : 91- 93: fqqlr EkL ivglq ENVR_ECOLI : 122- 124: cefnd EmL aegvi ENVR_ECOLI : 142- 144: pqtlr EvL qacqq ENVR_ECOLI : 216- 217: ihqtn E-L svm MTRR_NEIGO : 7- 9: rktkt EaL ktkeh MTRR_NEIGO : 13- 15: alktk EhL mlaal MTRR_NEIGO : 55- 57: hfknk EdL fdalf MTRR_NEIGO : 97- 99: llhff ErL qsndi TCMR_STRGA : 35- 37: dqlir EaL elfla TCMR_STRGA : 38- 39: ireal E-L flaqg TCMR_STRGA : 118- 119: rvrdg E-L egvdg TCMR_STRGA : 143- 145: pglla EyL rrsee TCMR_STRGA : 200- 202: adtdl EaL svafe TCMR_STRGA : 216- 217: dslrp E-L fadwr TER1_ECOLI : 32- 34: trkla ErL gvqqp TER2_ECOLI : 15- 16: insal E-L lnevg TER2_ECOLI : 15- 17: insal ElL nevgi TER2_ECOLI : 23- 25: nevgi EgL ttrkl TER2_ECOLI : 58- 60: dalai EmL drhht TER2_ECOLI : 111- 113: tekqy EtL enqla TER2_ECOLI : 175- 176: lrqai E-L fdhqg TER2_ECOLI : 191- 192: flfgl E-L iicgl TER3_ECOLI : 15- 16: irtal E-L lndvg TER3_ECOLI : 15- 17: irtal ElL ndvgm TER3_ECOLI : 23- 25: ndvgm EgL ttrrl TER3_ECOLI : 32- 34: trrla ErL gvqqp TER3_ECOLI : 212- 214: ttndi EvL knvde TER4_ECOLI : 15- 16: idaal E-L lnetg TER4_ECOLI : 15- 17: idaal ElL netgi TER4_ECOLI : 58- 60: dalav EiL arhhd TER4_ECOLI : 164- 166: paapd EnL ppllr TER4_ECOLI : 172- 174: ppllr EaL qimds TER4_ECOLI : 191- 193: flhgl EsL irgfe TER5_ECOLI : 20- 22: tllds EgL egltt TER5_ECOLI : 23- 25: dsegl EgL ttrkl TER5_ECOLI : 129- 131: gfsve EaL filqs TETC_ECOLI : 121- 122: iigwn E-L ekisl TETC_ECOLI : 175- 176: aknlk E-L adkkg TTK_ECOLI : 28- 30: rnrre EiL qslal TTK_ECOLI : 169- 171: gyttd EtL lasqi TTK_HAEIN : 4- 6: mve EqL slsgv TTK_HAEIN : 80- 82: ktkmf EaL iehie TTK_HAEIN : 214- 216: qwrfi EpL fa Y893_HAEIN : 23- 25: rlmar EgL nqlsm Y893_HAEIN : 53- 54: fknkd E-L leqfa Y893_HAEIN : 53- 55: fknkd ElL eqfah Y893_HAEIN : 109- 111: nlkqy EsL pnfkd Y893_HAEIN : 141- 142: aglla E-L sedil Y893_HAEIN : 172- 174: fdlkp EiL esvie YBIH_ECOLI : 56- 58: yfgsk EdL ylaca YBIH_ECOLI : 82- 84: haeea ErL faqpq YBIH_ECOLI : 97- 98: raair E-L ilrac YIXD_BACSU : 49- 51: ffknk EeL fdeif YIXD_BACSU : 50- 51: fknke E-L fdeif YIXD_BACSU : 147- 148: kpcdp E-L tafvm YIXD_BACSU : 181- 182: iagll E-L yvvkg YP23_STAAU : 13- 14: lgvak E-L fikng YP23_STAAU : 47- 49: hfktk EnL fleil YP23_STAAU : 52- 54: enlfl EiL niees YP23_STAAU : 84- 85: fylyn E-L sltte M 13: 7.8401 95( 18) E-x(1,2)-L Occurences: 95(18) ACRR_ECOLI : 72- 75: esnig EleL eyqak ACRR_ECOLI : 91- 93: lsvlr Ei-L ihvle ACRR_ECOLI : 142- 145: sydri EqtL khcie ACRR_ECOLI : 176- 179: isglm EnwL fapqs ACRR_ECOLI : 200- 203: vaill EmyL lcptl BETI_ECOLI : 85- 88: pqgsa EqrL qaivg BM3R_BACME : 51- 53: yfknk Es-L vnelf BM3R_BACME : 64- 66: qqhvn Ef-L qcies BM3R_BACME : 70- 73: flqci EsgL anerd BM3R_BACME : 117- 120: tflte EsrL ayqkl BM3R_BACME : 147- 150: irnlp EnaL iailf BM3R_BACME : 175- 177: lsltd El-L tgvee BM3R_BACME : 181- 184: lltgv EesL waals BM3R_BACME : 182- 184: ltgve Es-L waals ENVR_ECOLI : 8- 10: krtka Ea-L ktrqe ENVR_ECOLI : 61- 64: tqlfn EmwL qqpsl ENVR_ECOLI : 75- 77: reliq Eh-L tagle ENVR_ECOLI : 91- 93: fqqlr Ek-L ivglq ENVR_ECOLI : 122- 124: cefnd Em-L aegvi ENVR_ECOLI : 142- 144: pqtlr Ev-L qacqq MTRR_NEIGO : 7- 9: rktkt Ea-L ktkeh MTRR_NEIGO : 13- 15: alktk Eh-L mlaal MTRR_NEIGO : 55- 57: hfknk Ed-L fdalf MTRR_NEIGO : 97- 99: llhff Er-L qsndi TCMR_STRGA : 35- 37: dqlir Ea-L elfla TCMR_STRGA : 38- 41: ireal ElfL aqgye TCMR_STRGA : 73- 76: faske EvaL tpisa TCMR_STRGA : 84- 87: isaid EafL aalev TCMR_STRGA : 97- 100: vrpag EnpL qamsg TCMR_STRGA : 143- 145: pglla Ey-L rrsee TCMR_STRGA : 152- 155: rseem EgrL ariia TCMR_STRGA : 190- 193: rvvsr EwyL radtd TCMR_STRGA : 200- 202: adtdl Ea-L svafe TCMR_STRGA : 207- 210: lsvaf EsaL dslrp TER1_ECOLI : 32- 34: trkla Er-L gvqqp TER1_ECOLI : 57- 60: ldala EamL aenhs TER1_ECOLI : 188- 191: pdaaf EqgL avivd TER2_ECOLI : 15- 17: insal El-L nevgi TER2_ECOLI : 23- 25: nevgi Eg-L ttrkl TER2_ECOLI : 58- 60: dalai Em-L drhht TER2_ECOLI : 111- 113: tekqy Et-L enqla TER2_ECOLI : 114- 117: qyetl EnqL aflcq TER2_ECOLI : 128- 131: qgfsl EnaL yalsa TER2_ECOLI : 198- 201: iicgl EkqL kcesg TER3_ECOLI : 15- 17: irtal El-L ndvgm TER3_ECOLI : 23- 25: ndvgm Eg-L ttrrl TER3_ECOLI : 32- 34: trrla Er-L gvqqp TER3_ECOLI : 57- 60: ldala EamL tinht TER3_ECOLI : 160- 163: aeerg EdqL ttsas TER3_ECOLI : 191- 194: pdaaf ErgL aliig TER3_ECOLI : 212- 214: ttndi Ev-L knvde TER4_ECOLI : 15- 17: idaal El-L netgi TER4_ECOLI : 58- 60: dalav Ei-L arhhd TER4_ECOLI : 114- 117: qydtv EtqL rfmte TER4_ECOLI : 164- 166: paapd En-L ppllr TER4_ECOLI : 172- 174: ppllr Ea-L qimds TER4_ECOLI : 191- 193: flhgl Es-L irgfe TER4_ECOLI : 198- 201: lirgf EvqL tallq TER5_ECOLI : 20- 22: tllds Eg-L egltt TER5_ECOLI : 23- 25: dsegl Eg-L ttrkl TER5_ECOLI : 57- 60: mnmls EaiL akhht TER5_ECOLI : 81- 84: qqflq EnaL sfrka TER5_ECOLI : 114- 117: qfeqa EaqL rclcd TER5_ECOLI : 128- 131: agfsv EeaL filqs TER5_ECOLI : 129- 131: gfsve Ea-L filqs TETC_ECOLI : 94- 97: lesif EhyL dyiid TETC_ECOLI : 144- 147: skliq EnqL kayds TTK_ECOLI : 27- 30: krnrr EeiL qslal TTK_ECOLI : 28- 30: rnrre Ei-L qslal TTK_ECOLI : 59- 62: svgvs EaaL yrhfp TTK_ECOLI : 81- 84: liefi EdsL itrin TTK_ECOLI : 147- 150: lferi EaqL rqvlr TTK_ECOLI : 169- 171: gyttd Et-L lasqi TTK_ECOLI : 169- 172: gyttd EtlL asqil TTK_ECOLI : 181- 184: ilafc EgmL srfvr TTK_HAEIN : 3- 6: mv EeqL slsgv TTK_HAEIN : 4- 6: mve Eq-L slsgv TTK_HAEIN : 65- 68: evgvs EaaL yryfp TTK_HAEIN : 80- 82: ktkmf Ea-L iehie TTK_HAEIN : 87- 90: liehi EstL lsrit TTK_HAEIN : 138- 141: almfe EaqL qarva TTK_HAEIN : 214- 216: qwrfi Ep-L fa Y893_HAEIN : 23- 25: rlmar Eg-L nqlsm Y893_HAEIN : 53- 55: fknkd El-L eqfah Y893_HAEIN : 109- 111: nlkqy Es-L pnfkd Y893_HAEIN : 144- 147: laels EdiL fllsl Y893_HAEIN : 172- 174: fdlkp Ei-L esvie YBIH_ECOLI : 56- 58: yfgsk Ed-L ylaca YBIH_ECOLI : 82- 84: haeea Er-L faqpq YBIH_ECOLI : 97- 100: raair EliL rac YIXD_BACSU : 49- 51: ffknk Ee-L fdeif YIXD_BACSU : 72- 75: adeam EpsL pfhen YP23_STAAU : 47- 49: hfktk En-L fleil YP23_STAAU : 52- 54: enlfl Ei-L niees YP23_STAAU : 84- 87: fylyn ElsL tteyy YP23_STAAU : 133- 136: hvifk EgnL ngewc N 14: 7.8401 70( 18) R-x(1,2)-L Occurences: 70(18) ACRR_ECOLI : 90- 93: plsvl ReiL ihvle ACRR_ECOLI : 105- 108: tvtee RrrL lmeii ACRR_ECOLI : 106- 108: vteer Rr-L lmeii ACRR_ECOLI : 106- 109: vteer RrlL meiif ACRR_ECOLI : 107- 109: teerr Rl-L meiif ACRR_ECOLI : 131- 133: vqqaq Rn-L clesy BETI_ECOLI : 11- 14: mqsir RrqL idatl BETI_ECOLI : 12- 14: qsirr Rq-L idatl BETI_ECOLI : 131- 133: qqvss Rr-L lsnlv BETI_ECOLI : 131- 134: qqvss RrlL snlvs BETI_ECOLI : 132- 134: qvssr Rl-L snlvs BETI_ECOLI : 142- 145: lvsef RreL preqa BETI_ECOLI : 143- 145: vsefr Re-L preqa BETI_ECOLI : 167- 170: dglwl RaaL sgkpl BM3R_BACME : 100- 102: tknhp Ra-L gfikt BM3R_BACME : 143- 145: kqgvi Rn-L penal ENVR_ECOLI : 13- 16: ealkt RqeL ietai ENVR_ECOLI : 70- 72: qqpsl Re-L iqehl ENVR_ECOLI : 90- 93: pfqql RekL ivglq ENVR_ECOLI : 141- 144: npqtl RevL qacqq MTRR_NEIGO : 30- 33: rkgia RtsL neiaq MTRR_NEIGO : 44- 47: aagvt RgaL ywhfk MTRR_NEIGO : 89- 92: swtvf RhtL lhffe TCMR_STRGA : 23- 25: pglrq Rk-L rrtrd TCMR_STRGA : 29- 32: klrrt RdqL ireal TCMR_STRGA : 34- 37: rdqli ReaL elfla TCMR_STRGA : 108- 111: msgaf RavL grvrd TCMR_STRGA : 214- 217: aldsl RpeL fadwr TER1_ECOLI : 11- 14: pntvi RaaL dllne TER1_ECOLI : 28- 30: dgltt Rk-L aerlg TER1_ECOLI : 49- 51: hfrnk Ra-L ldala TER1_ECOLI : 49- 52: hfrnk RalL dalae TER1_ECOLI : 76- 79: adddw RsfL tgnar TER1_ECOLI : 87- 90: narsf RqaL layrd TER1_ECOLI : 118- 120: adaql Rf-L ceagf TER1_ECOLI : 201- 203: dglak Rr-L vvrnv TER2_ECOLI : 28- 30: egltt Rk-L aqklg TER2_ECOLI : 49- 51: hvknk Ra-L ldala TER2_ECOLI : 49- 52: hvknk RalL dalai TER2_ECOLI : 87- 90: naksf RcaL lshrd TER3_ECOLI : 11- 14: reavi RtaL ellnd TER3_ECOLI : 28- 30: egltt Rr-L aerlg TER3_ECOLI : 49- 51: hfknk Ra-L ldala TER3_ECOLI : 49- 52: hfknk RalL dalae TER3_ECOLI : 76- 79: ddddw RsfL kgnac TER3_ECOLI : 87- 90: nacsf RraL layrd TER3_ECOLI : 88- 90: acsfr Ra-L layrd TER3_ECOLI : 88- 91: acsfr RalL ayrdg TER3_ECOLI : 118- 120: adaql Rf-L cdagf TER3_ECOLI : 192- 194: daafe Rg-L aliig TER4_ECOLI : 28- 30: dgltt Rk-L aqklg TER4_ECOLI : 49- 51: hvknk Ra-L ldala TER4_ECOLI : 49- 52: hvknk RalL dalav TER4_ECOLI : 87- 90: namsf RraL lryrd TER4_ECOLI : 88- 90: amsfr Ra-L lryrd TER4_ECOLI : 88- 91: amsfr RalL ryrdg TER4_ECOLI : 128- 131: ngfsl RdgL yaisa TER4_ECOLI : 171- 174: lppll ReaL qimds TER5_ECOLI : 3- 6: ma RlsL ddvis TER5_ECOLI : 28- 30: egltt Rk-L aqslk TER5_ECOLI : 87- 90: nalsf RkaL lvhrd TER5_ECOLI : 118- 120: aeaql Rc-L cdagf TETC_ECOLI : 23- 25: lvnsa Ri-L fvekg TETC_ECOLI : 188- 191: fiaiy RgfL lslkd TTK_ECOLI : 87- 90: dslit RinL ilkde TTK_ECOLI : 101- 104: kdtta RlrL ivlll TTK_ECOLI : 121- 123: npglt Ri-L tghal TTK_ECOLI : 151- 154: ieaql RqvL rekrm TTK_ECOLI : 203- 206: ddfda RwpL iaaql TTK_HAEIN : 127- 129: npglt Rv-L tghal TTK_HAEIN : 163- 165: nilqm Rk-L regra Y893_HAEIN : 22- 25: drlma RegL nqlsm Y893_HAEIN : 125- 128: niknc RwdL fchqa YBIH_ECOLI : 96- 98: draai Re-L ilrac YIXD_BACSU : 5- 8: msid RkkL ileaa YIXD_BACSU : 83- 85: henvh Ra-L faile YIXD_BACSU : 122- 125: iqkme RsiL syiks YP23_STAAU : 171- 174: qnine RikL mnkfs O 15: 7.8401 55( 18) I-x(2,3)-L Occurences: 55(18) ACRR_ECOLI : 62- 65: dlfse Iwe-L sesni ACRR_ECOLI : 70- 73: lsesn Ige-L eleyq ACRR_ECOLI : 94- 97: lreil Ihv-L estvt ACRR_ECOLI : 141- 145: esydr IeqtL khcie ACRR_ECOLI : 171- 174: imrgy Isg-L menwl BETI_ECOLI : 15- 19: rrrql IdatL eaine BETI_ECOLI : 64- 68: atmrd ItsqL rdavl BETI_ECOLI : 161- 164: glaal Idg-L wlraa BETI_ECOLI : 188- 192: ltrhf ItqhL ptd BM3R_BACME : 69- 73: eflqc IesgL anerd BM3R_BACME : 142- 145: qkqgv Irn-L penal BM3R_BACME : 151- 154: penal Iai-L fgsfm ENVR_ECOLI : 73- 77: slrel IqehL tagle ENVR_ECOLI : 94- 97: lrekl Ivg-L qyiak ENVR_ECOLI : 207- 210: mpden Itk-L ihqtn MTRR_NEIGO : 111- 114: ykfhn Ilf-L kceht MTRR_NEIGO : 140- 144: iwrek ItavL teave MTRR_NEIGO : 166- 170: tavif IkstL dgliw TCMR_STRGA : 33- 37: trdql IreaL elfla TER1_ECOLI : 10- 14: qpntv IraaL dllne TER1_ECOLI : 194- 198: qglav IvdgL akrrl TER2_ECOLI : 10- 14: dkskv InsaL ellne TER2_ECOLI : 22- 25: lnevg Ieg-L ttrkl TER2_ECOLI : 57- 60: ldala Iem-L drhht TER2_ECOLI : 193- 197: fglel IicgL ekqlk TER2_ECOLI : 194- 197: gleli Icg-L ekqlk TER3_ECOLI : 10- 14: qreav IrtaL ellnd TER3_ECOLI : 197- 201: rglal IiggL ekmrl TER3_ECOLI : 198- 201: glali Igg-L ekmrl TER3_ECOLI : 211- 214: lttnd Iev-L knvde TER4_ECOLI : 10- 14: nresv IdaaL ellne TER4_ECOLI : 22- 25: lnetg Idg-L ttrkl TER5_ECOLI : 10- 14: slddv IsmaL tllds TETC_ECOLI : 137- 141: gkvna IvskL iqenq TTK_ECOLI : 29- 33: nrree IlqsL almle TTK_ECOLI : 80- 84: slief IedsL itrin TTK_ECOLI : 88- 92: slitr InliL kdekd TTK_ECOLI : 105- 108: arlrl Ivl-L llgfg TTK_ECOLI : 105- 109: arlrl IvllL lgfge TTK_ECOLI : 139- 142: rlqgr Inq-L ferie TTK_ECOLI : 146- 150: qlfer IeaqL rqvlr TTK_ECOLI : 207- 211: arwpl IaaqL q TTK_HAEIN : 40- 43: vltvl Ihm-L hserg TTK_HAEIN : 86- 90: alieh IestL lsrit TTK_HAEIN : 108- 112: qtmnr IhdiL qtild TTK_HAEIN : 178- 182: vderi IashL vtlce TTK_HAEIN : 213- 216: qqwrf Iep-L fa Y893_HAEIN : 91- 95: qmwkn IwyfL qenpt Y893_HAEIN : 101- 105: qenpt IlsnL kqyes Y893_HAEIN : 146- 149: elsed Ilf-L lslkt Y893_HAEIN : 146- 150: elsed IlflL slkta Y893_HAEIN : 165- 169: sdakf IdfdL kpeil YBIH_ECOLI : 18- 22: akkql IaaaL aqfge YBIH_ECOLI : 95- 98: pdraa Ire-L ilrac YIXD_BACSU : 55- 59: elfde IfttL lkemk YIXD_BACSU : 176- 179: ldket Iag-L lelyv YIXD_BACSU : 176- 180: ldket IaglL elyvv YP23_STAAU : 28- 31: tttge Ivk-L sessk P 16: 7.8401 53( 18) I-x(4,5)-L Occurences: 53(18) ACRR_ECOLI : 16- 21: etrqh Ildva-L rlfsq ACRR_ECOLI : 70- 75: lsesn Igele-L eyqak ACRR_ECOLI : 92- 97: svlre Ilihv-L estvt ACRR_ECOLI : 149- 154: tlkhc Ieakm-L padlm ACRR_ECOLI : 197- 203: rdyva IllemyL lcptl BETI_ECOLI : 9- 14: lgmqs Irrrq-L idatl BETI_ECOLI : 161- 166: glaal Idglw-L raals BM3R_BACME : 11- 16: tkqka Ifsas-L llfae BM3R_BACME : 11- 17: tkqka IfsaslL lfaer BM3R_BACME : 165- 170: evyem Iendy-L sltde ENVR_ECOLI : 103- 109: qyiak IprqqaL lkily ENVR_ECOLI : 173- 178: gafsg Ivqnw-L mnmag ENVR_ECOLI : 211- 217: nitkl IhqtneL svm MTRR_NEIGO : 28- 33: fyrkg Iarts-L neiaq MTRR_NEIGO : 164- 170: ketav IfikstL dgliw MTRR_NEIGO : 196- 201: priig Immdn-L enhpc TCMR_STRGA : 33- 39: trdql IrealeL flaqg TCMR_STRGA : 82- 87: tpisa Ideaf-L aalev TER1_ECOLI : 10- 16: qpntv IraaldL lnevg TER2_ECOLI : 10- 16: dkskv InsaleL lnevg TER3_ECOLI : 10- 16: qreav IrtaleL lndvg TER4_ECOLI : 10- 16: nresv IdaaleL lnetg TER4_ECOLI : 36- 41: aqklg Ieqpt-L ywhvk TER4_ECOLI : 207- 213: tallq IvggdkL iipfc TER5_ECOLI : 10- 16: slddv IsmaltL ldseg TER5_ECOLI : 36- 41: aqslk Ieqpt-L ywhvr TER5_ECOLI : 137- 142: filqs Ishft-L gavle TER5_ECOLI : 160- 166: ennhv IdaappL lqeaf TETC_ECOLI : 39- 44: vside Isgka-L vtkga TETC_ECOLI : 76- 82: miday IttktdL tngws TETC_ECOLI : 92- 97: sales Ifehy-L dyiid TETC_ECOLI : 101- 107: yldyi IdnnknL ipiqe TETC_ECOLI : 116- 122: qevmp IigwneL ekisl TETC_ECOLI : 117- 122: evmpi Igwne-L ekisl TETC_ECOLI : 142- 147: ivskl Iqenq-L kayds TETC_ECOLI : 168- 173: fmhia Ihakn-L kelad TETC_ECOLI : 186- 191: gqfia Iyrgf-L lslkd TETC_ECOLI : 186- 192: gqfia IyrgflL slkdk TTK_ECOLI : 29- 35: nrree IlqslaL mless TTK_ECOLI : 46- 51: dgsqr Ittak-L aasvg TTK_ECOLI : 85- 90: iedsl Itrin-L ilkde TTK_ECOLI : 105- 110: arlrl Ivlll-L gfger TTK_ECOLI : 122- 128: pgltr IltghaL mfeqd TTK_HAEIN : 86- 91: alieh Iestl-L srita TTK_HAEIN : 111- 116: nrihd Ilqti-L dfark TTK_HAEIN : 159- 165: mqfvn IlqmrkL regra TTK_HAEIN : 177- 182: nvder Iiash-L vtlce Y893_HAEIN : 146- 152: elsed IlfllsL ktain YBIH_ECOLI : 95- 100: pdraa Ireli-L rac YIXD_BACSU : 3- 8: ms Idrkk-L ileaa YIXD_BACSU : 55- 60: elfde Ifttl-L kemkq YIXD_BACSU : 176- 182: ldket IaglleL yvvkg YP23_STAAU : 130- 136: dayhv IfkegnL ngewc YP23_STAAU : 168- 174: theqn InerikL mnkfs YP23_STAAU : 181- 186: nkfsq Iflng-L sk Q 17: 7.8401 61( 18) A-x(1,2)-E Occurences: 61(18) ACRR_ECOLI : 9- 11: ktkqe Aq-E trqhi ACRR_ECOLI : 212- 215: tlrnp AtnE BETI_ECOLI : 17- 20: rqlid AtlE ainev BETI_ECOLI : 21- 24: datle AinE vgmhd BETI_ECOLI : 150- 152: lpreq Aq-E agygl BM3R_BACME : 74- 76: iesgl An-E rdgyr ENVR_ECOLI : 79- 82: qehlt AglE hdpfq MTRR_NEIGO : 18- 21: ehlml AalE tfyrk MTRR_NEIGO : 19- 21: hlmla Al-E tfyrk MTRR_NEIGO : 78- 81: iaqda AdaE ggswt MTRR_NEIGO : 147- 149: avlte Av-E nqdla TCMR_STRGA : 36- 38: qlire Al-E lflaq TCMR_STRGA : 56- 58: eqiae Av-E vhprt TCMR_STRGA : 69- 72: ffrhf AskE evalt TCMR_STRGA : 81- 84: ltpis AidE aflaa TCMR_STRGA : 88- 91: deafl AalE vrpag TCMR_STRGA : 89- 91: eafla Al-E vrpag TCMR_STRGA : 95- 97: levrp Ag-E nplqa TCMR_STRGA : 160- 163: larii AarE gvdld TCMR_STRGA : 161- 163: ariia Ar-E gvdld TCMR_STRGA : 205- 207: ealsv Af-E salds TER1_ECOLI : 54- 57: ralld AlaE amlae TER1_ECOLI : 144- 147: yftvg AvlE eqagd TER1_ECOLI : 177- 180: raaid AfdE agpda TER1_ECOLI : 185- 188: eagpd AafE qglav TER1_ECOLI : 186- 188: agpda Af-E qglav TER2_ECOLI : 13- 15: kvins Al-E llnev TER2_ECOLI : 56- 58: lldal Ai-E mldrh TER2_ECOLI : 154- 156: qehqv Ak-E eretp TER2_ECOLI : 154- 157: qehqv AkeE retpt TER2_ECOLI : 173- 175: pllrq Ai-E lfdhq TER3_ECOLI : 13- 15: avirt Al-E llndv TER3_ECOLI : 54- 57: ralld AlaE amlti TER3_ECOLI : 144- 147: yftvg AvlE qqase TER3_ECOLI : 150- 152: vleqq As-E adaee TER3_ECOLI : 153- 156: qqase AdaE erged TER3_ECOLI : 155- 157: asead Ae-E rgedq TER3_ECOLI : 188- 191: eggpd AafE rglal TER3_ECOLI : 189- 191: ggpda Af-E rglal TER4_ECOLI : 12- 15: esvid AalE llnet TER4_ECOLI : 13- 15: svida Al-E llnet TER4_ECOLI : 56- 58: lldal Av-E ilarh TER4_ECOLI : 70- 73: dyslp AagE swqsf TER4_ECOLI : 71- 73: yslpa Ag-E swqsf TER4_ECOLI : 144- 147: hftlg AvlE qqeht TER4_ECOLI : 161- 164: tdrpa ApdE nlppl TER5_ECOLI : 144- 147: hftlg AvlE eqatn TETC_ECOLI : 88- 90: tngws Al-E sifeh TTK_ECOLI : 178- 181: asqil AfcE gmlsr TTK_HAEIN : 58- 60: ttarl Ak-E vgvse TTK_HAEIN : 81- 84: tkmfe AliE hiest Y893_HAEIN : 21- 23: tdrlm Ar-E glnql Y893_HAEIN : 34- 36: smlkl Ak-E anvaa Y893_HAEIN : 68- 71: fsmfm AtlE kdfde YBIH_ECOLI : 78- 80: qfrph Ae-E aerlf YBIH_ECOLI : 94- 97: qpdra AirE lilra YIXD_BACSU : 67- 69: emkqk Ad-E ameps YIXD_BACSU : 70- 72: qkade Am-E pslpf YIXD_BACSU : 87- 90: hralf AilE frkth YIXD_BACSU : 112- 115: eigtm AvqE viqkm YP23_STAAU : 11- 13: kilgv Ak-E lfikn YP23_STAAU : 98- 101: yplqn AiiE fytey R 18: 7.8401 70( 18) A-x(2,3)-L Occurences: 70(18) ACRR_ECOLI : 20- 23: hildv Alr-L fsqqg ACRR_ECOLI : 129- 133: avvqq AqrnL clesy ACRR_ECOLI : 151- 154: khcie Akm-L padlm ACRR_ECOLI : 196- 199: ardyv Ail-L emyll BETI_ECOLI : 84- 88: lpqgs AeqrL qaivg BETI_ECOLI : 153- 157: eqaqe AgygL aalid BETI_ECOLI : 180- 183: ldktr Ans-L trhfi BM3R_BACME : 14- 17: kaifs Asl-L lfaer BM3R_BACME : 14- 18: kaifs AsllL faerg BM3R_BACME : 121- 125: eesrl AyqkL vefvc ENVR_ECOLI : 7- 10: akrtk Aea-L ktrqe ENVR_ECOLI : 154- 157: qqgcv Ann-L dldvv ENVR_ECOLI : 182- 186: wlmnm AgydL ykqap ENVR_ECOLI : 190- 193: dlykq Apa-L vdnvl MTRR_NEIGO : 29- 33: yrkgi ArtsL neiaq MTRR_NEIGO : 154- 157: enqdl Add-L dketa TCMR_STRGA : 36- 39: qlire Ale-L flaqg TCMR_STRGA : 129- 133: galhm AmmrL vertp TCMR_STRGA : 142- 145: tpgll Aey-L rrsee TCMR_STRGA : 195- 199: ewylr AdtdL ealsv TCMR_STRGA : 209- 213: vafes AldsL rpelf TER1_ECOLI : 12- 16: ntvir AaldL lnevg TER1_ECOLI : 13- 16: tvira Ald-L lnevg TER1_ECOLI : 13- 17: tvira AldlL nevgv TER1_ECOLI : 31- 34: ttrkl Aer-L gvqqp TER1_ECOLI : 56- 60: lldal AeamL aenhs TER1_ECOLI : 113- 117: pqmet AdaqL rflce TER1_ECOLI : 130- 134: fsagd AvnaL mtisy TER1_ECOLI : 199- 203: ivdgl AkrrL vvrnv TER2_ECOLI : 13- 16: kvins Ale-L lnevg TER2_ECOLI : 13- 17: kvins AlelL nevgi TER2_ECOLI : 31- 34: ttrkl Aqk-L gveqp TER2_ECOLI : 56- 60: lldal AiemL drhht TER2_ECOLI : 97- 101: shrdg AkvhL gtrpt TER2_ECOLI : 130- 134: fslen AlyaL savgh TER2_ECOLI : 173- 176: pllrq Aie-L fdhqg TER3_ECOLI : 13- 16: avirt Ale-L lndvg TER3_ECOLI : 13- 17: avirt AlelL ndvgm TER3_ECOLI : 31- 34: ttrrl Aer-L gvqqp TER3_ECOLI : 56- 60: lldal AeamL tinht TER3_ECOLI : 113- 117: pqmek AdaqL rflcd TER3_ECOLI : 130- 134: fsagd AtyaL maisy TER4_ECOLI : 12- 16: esvid AaleL lnetg TER4_ECOLI : 13- 16: svida Ale-L lnetg TER4_ECOLI : 13- 17: svida AlelL netgi TER4_ECOLI : 31- 34: ttrkl Aqk-L gieqp TER4_ECOLI : 56- 60: lldal AveiL arhhd TER4_ECOLI : 97- 101: ryrdg AkvhL gtrpd TER5_ECOLI : 2- 6: m ArlsL ddvis TER5_ECOLI : 13- 16: dvism Alt-L ldseg TER5_ECOLI : 13- 17: dvism AltlL dsegl TER5_ECOLI : 31- 34: ttrkl Aqs-L kieqp TER5_ECOLI : 113- 117: pqfeq AeaqL rclcd TER5_ECOLI : 130- 134: fsvee AlfiL qsish TER5_ECOLI : 162- 166: nhvid AappL lqeaf TER5_ECOLI : 163- 166: hvida App-L lqeaf TER5_ECOLI : 163- 167: hvida ApplL qeafn TETC_ECOLI : 22- 25: slvns Ari-L fvekg TETC_ECOLI : 170- 173: hiaih Akn-L kelad TTK_ECOLI : 34- 37: ilqsl Alm-L essdg TTK_ECOLI : 100- 104: ekdtt ArlrL ivlll TTK_ECOLI : 173- 177: detll AsqiL afceg TTK_ECOLI : 202- 206: tddfd ArwpL iaaql TTK_ECOLI : 208- 211: rwpli Aaq-L q TTK_HAEIN : 179- 182: derii Ash-L vtlce Y893_HAEIN : 4- 8: mrq AktdL aeqif Y893_HAEIN : 15- 19: eqifs AtdrL mareg Y893_HAEIN : 21- 25: tdrlm AregL nqlsm Y893_HAEIN : 136- 139: hqaqk Agl-L aelse Y893_HAEIN : 155- 158: lslkt Ain-L asdak YBIH_ECOLI : 13- 17: ikgeq AkkqL iaaal YBIH_ECOLI : 19- 22: kkqli Aaa-L aqfge YBIH_ECOLI : 81- 84: phaee Aer-L faqpq YBIH_ECOLI : 94- 98: qpdra AireL ilrac YIXD_BACSU : 150- 154: dpelt AfvmL klyia YIXD_BACSU : 177- 180: dketi Agl-L elyvv YP23_STAAU : 11- 14: kilgv Ake-L fikng S 19: 7.8401 43( 18) A-x(1,2)-I Occurences: 43(18) ACRR_ECOLI : 163- 165: lmtrr Aa-I imrgy ACRR_ECOLI : 163- 166: lmtrr AaiI mrgyi ACRR_ECOLI : 164- 166: mtrra Ai-I mrgyi BETI_ECOLI : 30- 32: vgmhd At-I aqiar BETI_ECOLI : 33- 35: hdati Aq-I arrag BETI_ECOLI : 158- 161: agygl AalI dglwl BETI_ECOLI : 159- 161: gygla Al-I dglwl BM3R_BACME : 40- 43: nakvg AgtI yryfk BM3R_BACME : 149- 151: nlpen Al-I ailfg ENVR_ECOLI : 101- 103: glqyi Ak-I prqqa MTRR_NEIGO : 123- 126: hteqn AavI aiark MTRR_NEIGO : 124- 126: teqna Av-I aiark MTRR_NEIGO : 162- 164: ldket Av-I fikst MTRR_NEIGO : 190- 193: dlgkt AprI igimm TCMR_STRGA : 156- 158: megrl Ar-I iaare TCMR_STRGA : 156- 159: megrl AriI aareg TER1_ECOLI : 97- 99: ayrdg Ar-I hagtr TER1_ECOLI : 173- 175: spllr Aa-I dafde TER1_ECOLI : 192- 194: feqgl Av-I vdgla TER2_ECOLI : 54- 57: ralld AlaI emldr TER3_ECOLI : 8- 10: klqre Av-I rtale TER3_ECOLI : 97- 99: ayrdg Ar-I hagtr TER3_ECOLI : 177- 180: arlqs AmkI vyegg TER3_ECOLI : 195- 197: fergl Al-I iggle TER3_ECOLI : 195- 198: fergl AliI gglek TER4_ECOLI : 56- 59: lldal AveI larhh TER4_ECOLI : 173- 176: pllre AlqI mdsdd TER5_ECOLI : 130- 133: fsvee AlfI lqsis TER5_ECOLI : 170- 173: pllqe AfnI qarts TETC_ECOLI : 22- 24: slvns Ar-I lfvek TETC_ECOLI : 33- 36: ekgyq AvsI deisg TETC_ECOLI : 74- 76: limid Ay-I ttktd TTK_ECOLI : 173- 176: detll AsqI lafce TTK_HAEIN : 15- 18: gveei ApkI etpki TTK_HAEIN : 81- 83: tkmfe Al-I ehies Y893_HAEIN : 9- 12: aktdl AeqI fsatd Y893_HAEIN : 41- 44: eanva AgtI ylyfk Y893_HAEIN : 162- 165: nlasd AkfI dfdlk YBIH_ECOLI : 5- 8: mnnp AmtI kgeqa YBIH_ECOLI : 46- 48: agqni Aa-I tyyfg YBIH_ECOLI : 63- 66: lylac AqwI adfig YBIH_ECOLI : 67- 70: caqwi AdfI geqfr YBIH_ECOLI : 93- 95: pqpdr Aa-I relil YIXD_BACSU : 106- 108: ifqen Ae-I gtmav YIXD_BACSU : 159- 161: lklyi Al-I fdwek YP23_STAAU : 98- 100: yplqn Ai-I efyte T 20: 7.8401 45( 18) D-x(0,1)-A Occurences: 45(18) ACRR_ECOLI : 18- 20: rqhil DvA lrlfs BETI_ECOLI : 16- 17: rrqli D-A tleai BETI_ECOLI : 29- 30: evgmh D-A tiaqi BETI_ECOLI : 70- 71: tsqlr D-A vlnrl BM3R_BACME : 25- 26: aergf D-A ttmpm ENVR_ECOLI : 36- 38: kttln DiA daanv ENVR_ECOLI : 39- 40: lndia D-A anvtr ENVR_ECOLI : 39- 41: lndia DaA nvtrg ENVR_ECOLI : 167- 169: vmiii DgA fsgiv MTRR_NEIGO : 59- 60: kedlf D-A lfqri MTRR_NEIGO : 76- 77: nciaq D-A adaeg MTRR_NEIGO : 76- 78: nciaq DaA daegg MTRR_NEIGO : 79- 80: aqdaa D-A eggsw MTRR_NEIGO : 152- 154: avenq DlA ddldk TCMR_STRGA : 2- 4: m DsA etdtp TCMR_STRGA : 83- 85: pisai DeA flaal TCMR_STRGA : 123- 125: elegv DgA lhmam TER1_ECOLI : 53- 54: krall D-A laeam TER1_ECOLI : 95- 97: llayr DgA rihag TER1_ECOLI : 114- 115: qmeta D-A qlrfl TER1_ECOLI : 129- 130: gfsag D-A vnalm TER1_ECOLI : 176- 177: lraai D-A fdeag TER1_ECOLI : 179- 181: aidaf DeA gpdaa TER1_ECOLI : 184- 185: deagp D-A afeqg TER1_ECOLI : 184- 186: deagp DaA feqgl TER2_ECOLI : 53- 54: krall D-A laiem TER2_ECOLI : 95- 97: llshr DgA kvhlg TER3_ECOLI : 53- 54: krall D-A laeam TER3_ECOLI : 95- 97: llayr DgA rihag TER3_ECOLI : 114- 115: qmeka D-A qlrfl TER3_ECOLI : 122- 123: lrflc D-A gfsag TER3_ECOLI : 129- 130: gfsag D-A tyalm TER3_ECOLI : 154- 155: qasea D-A eerge TER3_ECOLI : 187- 188: yeggp D-A aferg TER3_ECOLI : 187- 189: yeggp DaA fergl TER4_ECOLI : 11- 12: resvi D-A alell TER4_ECOLI : 11- 13: resvi DaA lelln TER4_ECOLI : 53- 54: krall D-A lavei TER4_ECOLI : 95- 97: llryr DgA kvhlg TER5_ECOLI : 95- 97: llvhr DgA rlhig TER5_ECOLI : 122- 123: lrclc D-A gfsve TER5_ECOLI : 161- 162: nnhvi D-A appll TER5_ECOLI : 161- 163: nnhvi DaA ppllq TETC_ECOLI : 73- 74: qlimi D-A yittk TTK_ECOLI : 201- 202: ptddf D-A rwpli TTK_HAEIN : 117- 119: lqtil DfA rknpg Y893_HAEIN : 7- 9: rqakt DlA eqifs Y893_HAEIN : 161- 162: inlas D-A kfidf YBIH_ECOLI : 91- 93: aqpqp DrA airel YIXD_BACSU : 68- 70: mkqka DeA mepsl YP23_STAAU : 125- 126: enkyi D-A yhvif Number of patterns evaluated by Pratt:299 Total running time: 0 seconds