------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 9 sequences from file HTH_ICLR_FAMILY PATTERN CONSERVATION: CM: min Nr of Seqs to Match 9 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename HTH_ICLR_FAMILY.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: GYLR_STRCO 254 GYLR_STRGR 254 ICLR_ECOLI 274 ICLR_SALTY 274 KDGR_ERWCH 306 YCSO_BACSU 246 YIAJ_ECOLI 282 YIAJ_HAEIN 268 YJHI_ECOLI 262 Pratt run started at Thu Feb 6 19:56:38 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 12.5102 12( 9) L-x(3)-A-x-G 2: 12.0102 12( 9) A-x(2)-I-x(0,1)-S 3: 12.0102 12( 9) A-x-G-x(3,4)-A 4: 12.0102 17( 9) L-x(2,3)-A-x-G 5: 12.0102 12( 9) L-x(2)-L-x(4,5)-L 6: 12.0102 10( 9) S-x(4,5)-L-x-L 7: 12.0102 18( 9) A-x(0,1)-G-x(3)-L 8: 12.0102 16( 9) E-x(4,5)-L-x(3)-A 9: 12.0102 10( 9) S-x(2,3)-R-x(4)-L 10: 12.0102 10( 9) L-x(1,2)-E-L 11: 12.0102 13( 9) L-x(2,3)-L-x(2)-L 12: 11.5102 18( 9) A-x(2,3)-I-x(0,1)-S 13: 11.5102 12( 9) V-x(2,3)-A-x(3,4)-S 14: 11.5102 13( 9) L-x(0,1)-E-x(4,5)-A 15: 11.5102 13( 9) L-x(0,1)-E-x(3,4)-A 16: 11.5102 14( 9) L-x(2)-L-x(3,5)-V 17: 11.5102 24( 9) L-x(1,2)-L-x(1,2)-E 18: 11.5102 11( 9) G-x(1,2)-A-x(2,3)-E 19: 11.5102 14( 9) A-x(0,1)-G-x(3,4)-A 20: 11.5102 14( 9) A-x(1,2)-I-x(0,1)-S Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 16.8221 12( 9) A-x(0,1)-G-x(3)-L-[AGST]-x(4)-[AES] B 2: 16.1306 9( 9) L-x(2,3)-L-x(2)-L-[AEGNT]-x(4)-[DQST] C 3: 16.1299 9( 9) S-x(2,3)-R-x(4)-L-x(3)-[ADGT]-x(2)-[EGNST] D 4: 15.3873 9( 9) L-x(3)-A-x-G-x(3)-[FLM] E 5: 14.6525 10( 9) A-x-[NQS]-I-x(0,1)-S F 6: 12.0102 12( 9) A-x-G-x(3,4)-A G 7: 12.0102 17( 9) L-x(2,3)-A-x-G H 8: 12.0102 12( 9) L-x(2)-L-x(4,5)-L I 9: 12.0102 10( 9) S-x(4,5)-L-x-L J 10: 12.0102 16( 9) E-x(4,5)-L-x(3)-A K 11: 12.0102 10( 9) L-x(1,2)-E-L L 12: 11.5102 18( 9) A-x(2,3)-I-x(0,1)-S M 13: 11.5102 12( 9) V-x(2,3)-A-x(3,4)-S N 14: 11.5102 13( 9) L-x(0,1)-E-x(4,5)-A O 15: 11.5102 13( 9) L-x(0,1)-E-x(3,4)-A P 16: 11.5102 14( 9) L-x(2)-L-x(3,5)-V Q 17: 11.5102 24( 9) L-x(1,2)-L-x(1,2)-E R 18: 11.5102 11( 9) G-x(1,2)-A-x(2,3)-E S 19: 11.5102 14( 9) A-x(0,1)-G-x(3,4)-A T 20: 11.5102 14( 9) A-x(1,2)-I-x(0,1)-S Best patterns with alignements: fitness hits(seqs) Pattern A 1: 16.8221 12( 9) A-x(0,1)-G-x(3)-L-[AGST]-x(4)-[AES] Occurences: 12(9) GYLR_STRCO : 19- 31: mlrll AgGerrLGlsdiA sslgl GYLR_STRGR : 19- 31: mlrll AgGerrLGlsdiA stlgl GYLR_STRGR : 59- 71: veqep AsGryqLGaellA lgnsy ICLR_ECOLI : 161- 172: mhasg A-GkafLAqlseE qvtkl ICLR_SALTY : 161- 172: mpasg A-GkafLSqlseE qvtsl KDGR_ERWCH : 189- 201: plhst AiGkvlLAwrdrE evkei YCSO_BACSU : 57- 69: flsrd AsGaysLGlvflE fgqlv YIAJ_ECOLI : 77- 89: vttap AaGsyrLTtkfiA vgqka YIAJ_ECOLI : 78- 89: ttapa A-GsyrLTtkfiA vgqka YIAJ_HAEIN : 69- 81: vkpan AaGsyrLTikclS igqkv YIAJ_HAEIN : 70- 81: kpana A-GsyrLTikclS igqkv YJHI_ECOLI : 139- 151: elhit AlGkalLAwktrE eldyf B 2: 16.1306 9( 9) L-x(2,3)-L-x(2)-L-[AEGNT]-x(4)-[DQST] Occurences: 9(9) GYLR_STRCO : 65- 78: sgryq LgaeLlrLGttylD vhelr GYLR_STRGR : 65- 78: sgryq LgaeLlaLGnsylD vhelr ICLR_ECOLI : 27- 40: gqvqs LtrgLklLEwiaeS ngsva ICLR_SALTY : 27- 40: gqvqs LtrgLklLEwiaeS ngtva KDGR_ERWCH : 115- 128: sekys LtlkLfeLGakalQ nvdli YCSO_BACSU : 26- 38: kpslt Lse-LvsLTgmpkT svhrm YIAJ_ECOLI : 45- 57: pngcp Lah-LseLAglnkS tvhrl YIAJ_HAEIN : 37- 49: pngcp Lak-LaeLAnlnkS tahrl YJHI_ECOLI : 153- 166: ktree LdyfLeaLTltphT rntft C 3: 16.1299 9( 9) S-x(2,3)-R-x(4)-L-x(3)-[ADGT]-x(2)-[EGNST] Occurences: 9(9) GYLR_STRCO : 7- 22: arniq Sle-RaaamLrllAggE rrlgl GYLR_STRGR : 7- 22: arniq Sle-RaaamLrllAggE rrlgl ICLR_ECOLI : 26- 41: tgqvq Slt-RglklLewiAesN gsval ICLR_SALTY : 26- 41: tgqvq Slt-RglklLewiAesN gtval KDGR_ERWCH : 144- 160: qmrel SaltRetihLgalDedS ivyih YCSO_BACSU : 39- 54: gmpkt Svh-RmvssLeemGflS rdasg YIAJ_ECOLI : 57- 73: aglnk StvhRllqgLqscGyvT tapaa YIAJ_HAEIN : 171- 186: shywq Shq-ReikkLtryTitE lddik YJHI_ECOLI : 8- 23: rkgcn Slv-RaekiLthiAwvG masym D 4: 15.3873 9( 9) L-x(3)-A-x-G-x(3)-[FLM] Occurences: 9(9) GYLR_STRCO : 15- 25: raaam LrllAgGerrL glsdi GYLR_STRGR : 15- 25: raaam LrllAgGerrL glsdi ICLR_ECOLI : 79- 89: rqvge LghwAiGahaF mvgss ICLR_SALTY : 79- 89: rqvge LghwAvGphaF ivgss KDGR_ERWCH : 185- 195: grrnp LhstAiGkvlL awrdr YCSO_BACSU : 53- 63: eemgf LsrdAsGaysL glvfl YIAJ_ECOLI : 154- 164: gqhmp LycsAmGkiyM afghp YIAJ_HAEIN : 146- 156: gqylk LycsAmGkifL ayekk YJHI_ECOLI : 135- 145: gkkle LhitAlGkalL awktr E 5: 14.6525 10( 9) A-x-[NQS]-I-x(0,1)-S Occurences: 10(9) GYLR_STRCO : 2- 7: m ArNIqS leraa GYLR_STRGR : 2- 7: m ArNIqS leraa ICLR_ECOLI : 237- 241: repfa AiSI-S gpisr ICLR_SALTY : 237- 241: repfa AlSI-S gprsr KDGR_ERWCH : 292- 296: mlhta ArNI-S dqmgy YCSO_BACSU : 139- 144: yagac ArSIlS flpre YCSO_BACSU : 240- 244: kvkda AlQI-S rk YIAJ_ECOLI : 237- 241: grvpy AvSI-S lstsr YIAJ_HAEIN : 256- 260: eirkt AeQI-S lelgy YJHI_ECOLI : 242- 246: llrkc AeQI-S yglgy F 6: 12.0102 12( 9) A-x-G-x(3,4)-A Occurences: 12(9) GYLR_STRCO : 139- 146: plhst AlGkvlsA ydpva GYLR_STRCO : 214- 220: rmpvg AvGitg-A verlc GYLR_STRGR : 139- 146: plhst AhGkvisA fdpva ICLR_ECOLI : 158- 164: klpmh AsGagk-A flaql ICLR_ECOLI : 217- 224: ddeeh AlGlrclA acifd ICLR_SALTY : 158- 164: scpmp AsGagk-A flsql ICLR_SALTY : 217- 224: ddeeh AlGlrcvA sciyd KDGR_ERWCH : 189- 196: plhst AiGkvllA wrdre YCSO_BACSU : 212- 218: herqv AaGisi-A gfear YIAJ_ECOLI : 158- 165: plycs AmGkiymA fghpd YIAJ_HAEIN : 150- 157: klycs AmGkiflA yekkv YJHI_ECOLI : 139- 146: elhit AlGkallA wktre G 7: 12.0102 17( 9) L-x(2,3)-A-x-G Occurences: 17(9) GYLR_STRCO : 15- 21: raaam LrllAgG errlg GYLR_STRCO : 34- 39: diass Lgl-AkG tahgi GYLR_STRCO : 135- 141: gamqp LhstAlG kvlsa GYLR_STRGR : 15- 21: raaam LrllAgG errlg GYLR_STRGR : 34- 39: diast Lgl-AkG tahgi GYLR_STRGR : 135- 141: gamhp LhstAhG kvisa GYLR_STRGR : 180- 185: eevld Ltr-ArG waldl ICLR_ECOLI : 79- 85: rqvge LghwAiG ahafm ICLR_ECOLI : 154- 160: piggk LpmhAsG agkaf ICLR_SALTY : 79- 85: rqvge LghwAvG phafi KDGR_ERWCH : 185- 191: grrnp LhstAiG kvlla YCSO_BACSU : 53- 59: eemgf LsrdAsG ayslg YCSO_BACSU : 123- 128: tqtvr Lyt-AiG rrspl YIAJ_ECOLI : 111- 116: phlea Lni-AtG etinf YIAJ_ECOLI : 154- 160: gqhmp LycsAmG kiyma YIAJ_HAEIN : 146- 152: gqylk LycsAmG kifla YJHI_ECOLI : 135- 141: gkkle LhitAlG kalla H 8: 12.0102 12( 9) L-x(2)-L-x(4,5)-L Occurences: 12(9) GYLR_STRCO : 69- 77: qlgae LlrLgtty-L dvhel GYLR_STRCO : 103- 112: gesvh LgvLhqqgvL ivhhv GYLR_STRGR : 69- 77: qlgae LlaLgnsy-L dvhel GYLR_STRGR : 103- 112: geaay LgvLhqqgvL ivhhv ICLR_ECOLI : 46- 55: ngsva LteLaqqagL pnstt ICLR_SALTY : 46- 55: ngtva LteLaqqagL pnsst KDGR_ERWCH : 29- 37: tktrv LffLkqki-L srvtt KDGR_ERWCH : 119- 127: sltlk LfeLgaka-L qnvdl YCSO_BACSU : 65- 73: ayslg LvfLefgq-L vadrl YIAJ_ECOLI : 45- 54: pngcp LahLselagL nkstv YIAJ_HAEIN : 37- 46: pngcp LakLaelanL nksta YJHI_ECOLI : 177- 185: dkklf LeeLqktr-L rgwai I 9: 12.0102 10( 9) S-x(4,5)-L-x-L Occurences: 10(9) GYLR_STRCO : 28- 36: rrlgl SdiassLgL akgta GYLR_STRGR : 28- 36: rrlgl SdiastLgL akgta ICLR_ECOLI : 26- 33: tgqvq Sltrg-LkL lewia ICLR_SALTY : 26- 33: tgqvq Sltrg-LkL lewia KDGR_ERWCH : 110- 117: aqege Sekys-LtL klfel YCSO_BACSU : 11- 19: ktvvk SmallnLfL hkpsl YCSO_BACSU : 58- 65: lsrda Sgays-LgL vflef YIAJ_ECOLI : 25- 32: pagsq Slfrg-LmL ieils YIAJ_HAEIN : 97- 105: iihva SpyleqLnL klget YJHI_ECOLI : 127- 135: vptsk SwigkkLeL hital J 10: 12.0102 16( 9) E-x(4,5)-L-x(3)-A Occurences: 16(9) GYLR_STRCO : 9- 19: niqsl EraaamLrllA ggerr GYLR_STRCO : 22- 31: llagg Errlg-LsdiA sslgl GYLR_STRGR : 9- 19: niqsl EraaamLrllA ggerr GYLR_STRGR : 22- 31: llagg Errlg-LsdiA stlgl ICLR_ECOLI : 214- 224: ysfdd EehalgLrclA acifd ICLR_ECOLI : 215- 224: sfdde Ehalg-LrclA acifd ICLR_SALTY : 214- 224: ysfdd EehalgLrcvA sciyd ICLR_SALTY : 215- 224: sfdde Ehalg-LrcvA sciyd KDGR_ERWCH : 243- 253: ygedn EeqeegLrciA vpvfd KDGR_ERWCH : 244- 253: gedne Eqeeg-LrciA vpvfd KDGR_ERWCH : 283- 292: ednkh Eyvam-LhtaA rnisd YCSO_BACSU : 48- 57: mvssl Eemgf-LsrdA sgays YIAJ_ECOLI : 136- 146: liykl EpttgmLrtrA yigqh YIAJ_HAEIN : 8- 17: ievkm Ekeks-LgnqA lirgl YIAJ_HAEIN : 128- 138: miykl EptngmLktrA yigqy YJHI_ECOLI : 179- 189: klfle ElqktrLrgwA idnee K 11: 12.0102 10( 9) L-x(1,2)-E-L Occurences: 10(9) GYLR_STRCO : 65- 69: sgryq LgaEL lrlgt GYLR_STRCO : 230- 234: crege LrpEL vaavr GYLR_STRGR : 65- 69: sgryq LgaEL lalgn ICLR_ECOLI : 46- 49: ngsva Lt-EL aqqag ICLR_SALTY : 46- 49: ngtva Lt-EL aqqag KDGR_ERWCH : 119- 122: sltlk Lf-EL gakal YCSO_BACSU : 26- 29: kpslt Ls-EL vsltg YIAJ_ECOLI : 48- 51: cplah Ls-EL aglnk YIAJ_HAEIN : 40- 43: cplak La-EL anlnk YJHI_ECOLI : 177- 180: dkklf Le-EL qktrl L 12: 11.5102 18( 9) A-x(2,3)-I-x(0,1)-S Occurences: 18(9) GYLR_STRCO : 2- 7: m Arn-IqS leraa GYLR_STRGR : 2- 7: m Arn-IqS leraa ICLR_ECOLI : 236- 241: hrepf AaisI-S gpisr ICLR_ECOLI : 237- 241: repfa Ais-I-S gpisr ICLR_SALTY : 236- 241: hrepf AalsI-S gprsr ICLR_SALTY : 237- 241: repfa Als-I-S gprsr KDGR_ERWCH : 265- 270: fgvvi AglsI-S fptir KDGR_ERWCH : 291- 296: amlht AarnI-S dqmgy KDGR_ERWCH : 292- 296: mlhta Arn-I-S dqmgy YCSO_BACSU : 139- 144: yagac Ars-IlS flpre YCSO_BACSU : 212- 216: herqv Aag-I-S iagfe YCSO_BACSU : 239- 244: ekvkd AalqI-S rk YCSO_BACSU : 240- 244: kvkda Alq-I-S rk YIAJ_ECOLI : 237- 241: grvpy Avs-I-S lstsr YIAJ_ECOLI : 263- 267: plret Aqa-I-S nelgf YIAJ_HAEIN : 256- 260: eirkt Aeq-I-S lelgy YJHI_ECOLI : 104- 109: vchlg AmesI-S aiyld YJHI_ECOLI : 242- 246: llrkc Aeq-I-S yglgy M 13: 11.5102 12( 9) V-x(2,3)-A-x(3,4)-S Occurences: 12(9) GYLR_STRCO : 238- 246: elvaa VrdcArav-S rdlga GYLR_STRGR : 238- 246: elvta VrdcAaav-S rdlga ICLR_ECOLI : 120- 128: esget Vnm-AvldqS dheai ICLR_SALTY : 84- 93: lghwa VgphAfivgS sflqs ICLR_SALTY : 120- 128: dsget Vnl-AvldqS dhqai KDGR_ERWCH : 262- 270: fdrfg Vvi-AglsiS fptir YCSO_BACSU : 236- 244: yltek VkdaAlqi-S rk YCSO_BACSU : 236- 244: yltek Vkd-AalqiS rk YIAJ_ECOLI : 72- 80: qscgy Vtt-ApaagS yrltt YIAJ_ECOLI : 234- 241: dihgr Vpy-Avsi-S lstsr YIAJ_HAEIN : 64- 72: qnegy Vkp-AnaagS yrlti YIAJ_HAEIN : 227- 234: dsfgq Vey-Aisv-S msiyr YJHI_ECOLI : 213- 220: nmynr Vny-Aisl-S gdpvv N 14: 11.5102 13( 9) L-x(0,1)-E-x(4,5)-A Occurences: 13(9) GYLR_STRCO : 156- 162: ahsea L-Eadrk-A ftdrt GYLR_STRGR : 190- 198: gwald LeEtwegvA slaap ICLR_ECOLI : 46- 53: ngsva LtElaqq-A glpns ICLR_SALTY : 46- 53: ngtva LtElaqq-A glpns KDGR_ERWCH : 119- 126: sltlk LfElgak-A lqnvd YCSO_BACSU : 68- 75: lglvf L-EfgqlvA drldi YCSO_BACSU : 193- 199: vsyse L-Enyta-A igapi YCSO_BACSU : 232- 239: drlpy LtEkvkd-A alqis YCSO_BACSU : 232- 240: drlpy LtEkvkdaA lqisr YIAJ_ECOLI : 108- 114: iaaph L-Ealni-A tgeti YIAJ_HAEIN : 194- 201: dikle L-EtirqtA yamdr YIAJ_HAEIN : 249- 256: gtdaf LqEirkt-A eqisl YJHI_ECOLI : 133- 139: wigkk L-Elhit-A lgkal YJHI_ECOLI : 235- 242: kidsy L-EllrkcA eqisy O 15: 11.5102 13( 9) L-x(0,1)-E-x(3,4)-A Occurences: 13(9) GYLR_STRCO : 8- 13: rniqs L-Eraa-A mlrll GYLR_STRCO : 156- 162: ahsea L-EadrkA ftdrt GYLR_STRGR : 8- 13: rniqs L-Eraa-A mlrll GYLR_STRGR : 156- 161: ahsev L-Egdr-A tltgr ICLR_ECOLI : 46- 53: ngsva LtElaqqA glpns ICLR_SALTY : 46- 53: ngtva LtElaqqA glpns KDGR_ERWCH : 119- 126: sltlk LfElgakA lqnvd YCSO_BACSU : 193- 198: vsyse L-Enyt-A aigap YCSO_BACSU : 193- 199: vsyse L-EnytaA igapi YCSO_BACSU : 232- 239: drlpy LtEkvkdA alqis YIAJ_ECOLI : 108- 114: iaaph L-EalniA tgeti YIAJ_ECOLI : 259- 265: nllkp LrEtaq-A isnel YIAJ_HAEIN : 249- 256: gtdaf LqEirktA eqisl YJHI_ECOLI : 133- 139: wigkk L-ElhitA lgkal P 16: 11.5102 14( 9) L-x(2)-L-x(3,5)-V Occurences: 14(9) GYLR_STRCO : 45- 54: tahgi LrtLqqegfV eqdda GYLR_STRCO : 103- 111: gesvh LgvLhqqg-V livhh GYLR_STRGR : 45- 54: tahgi LrsLqaegfV eqepa GYLR_STRGR : 103- 111: geaay LgvLhqqg-V livhh ICLR_ECOLI : 166- 174: agkaf LaqLseeq-V tkllh ICLR_SALTY : 166- 174: agkaf LsqLseeq-V tsllh KDGR_ERWCH : 153- 162: retih LgaLdedsiV yihki YCSO_BACSU : 65- 74: ayslg LvfLefgqlV adrld YCSO_BACSU : 229- 236: ftedr LpyLtek--V kdaal YIAJ_ECOLI : 51- 59: ahlse LagLnkst-V hrllq YIAJ_ECOLI : 63- 72: tvhrl LqgLqscgyV ttapa YIAJ_HAEIN : 55- 64: tahrl LqgLqnegyV kpana YJHI_ECOLI : 41- 49: ypkss LlnLlnvm-V dcgfl YJHI_ECOLI : 42- 49: pkssl LnlLnvm--V dcgfl Q 17: 11.5102 24( 9) L-x(1,2)-L-x(1,2)-E Occurences: 24(9) GYLR_STRCO : 45- 51: tahgi LrtLqqE gfveq GYLR_STRGR : 45- 51: tahgi LrsLqaE gfveq GYLR_STRGR : 188- 192: argwa Ld-Le-E twegv ICLR_ECOLI : 31- 35: sltrg Lk-Ll-E wiaes ICLR_ECOLI : 109- 114: ivhpi LrnLm-E esget ICLR_ECOLI : 109- 115: ivhpi LrnLmeE sgetv ICLR_ECOLI : 166- 171: agkaf LaqLs-E eqvtk ICLR_ECOLI : 166- 172: agkaf LaqLseE qvtkl ICLR_SALTY : 31- 35: sltrg Lk-Ll-E wiaes ICLR_SALTY : 109- 114: ivhpi LrkLm-E dsget ICLR_SALTY : 166- 171: agkaf LsqLs-E eqvts ICLR_SALTY : 166- 172: agkaf LsqLseE qvtsl KDGR_ERWCH : 66- 71: kvfgi LqaLg-E ereig KDGR_ERWCH : 66- 72: kvfgi LqaLgeE reigi KDGR_ERWCH : 117- 121: kyslt Lk-Lf-E lgaka KDGR_ERWCH : 143- 149: iqmre LsaLtrE tihlg KDGR_ERWCH : 153- 158: retih LgaLd-E dsivy YCSO_BACSU : 24- 28: lhkps Lt-Ls-E lvslt YCSO_BACSU : 143- 149: carsi LsfLprE eieay YCSO_BACSU : 229- 234: ftedr LpyLt-E kvkda YIAJ_ECOLI : 30- 34: slfrg Lm-Li-E ilsny YIAJ_ECOLI : 45- 50: pngcp LahLs-E lagln YIAJ_ECOLI : 256- 261: geknl LkpLr-E taqai YIAJ_HAEIN : 37- 42: pngcp LakLa-E lanln YIAJ_HAEIN : 55- 61: tahrl LqgLqnE gyvkp YIAJ_HAEIN : 105- 109: leqln Lk-Lg-E tinfs YIAJ_HAEIN : 261- 266: aeqis Le-LgyE ni YJHI_ECOLI : 175- 179: ftdkk Lf-Le-E lqktr R 18: 11.5102 11( 9) G-x(1,2)-A-x(2,3)-E Occurences: 11(9) GYLR_STRCO : 185- 191: itrar GyaAdv-E etweg GYLR_STRCO : 185- 191: itrar Gy-AadvE etweg GYLR_STRCO : 185- 192: itrar GyaAdveE twegi GYLR_STRGR : 185- 191: ltrar Gw-AldlE etweg ICLR_ECOLI : 42- 48: iaesn GsvAlt-E laqqa ICLR_SALTY : 42- 48: iaesn GtvAlt-E laqqa KDGR_ERWCH : 102- 109: tmksl GyvAqegE sekys YCSO_BACSU : 106- 113: limrd GneAiyvE kiegt YCSO_BACSU : 219- 226: gisia GfeArftE drlpy YIAJ_ECOLI : 208- 214: hires Ga-AmdrE enelg YIAJ_HAEIN : 244- 251: rlnkf GtdAflqE irkta YJHI_ECOLI : 23- 29: hiawv Gm-AsymE llnkf YJHI_ECOLI : 187- 193: ktrlr Gw-AidnE estyg S 19: 11.5102 14( 9) A-x(0,1)-G-x(3,4)-A Occurences: 14(9) GYLR_STRCO : 139- 146: plhst AlGkvlsA ydpva GYLR_STRCO : 214- 220: rmpvg AvGitg-A verlc GYLR_STRGR : 139- 146: plhst AhGkvisA fdpva ICLR_ECOLI : 158- 164: klpmh AsGagk-A flaql ICLR_ECOLI : 161- 167: mhasg A-GkaflA qlsee ICLR_ECOLI : 217- 224: ddeeh AlGlrclA acifd ICLR_SALTY : 158- 164: scpmp AsGagk-A flsql ICLR_SALTY : 217- 224: ddeeh AlGlrcvA sciyd KDGR_ERWCH : 189- 196: plhst AiGkvllA wrdre YCSO_BACSU : 212- 218: herqv AaGisi-A gfear YCSO_BACSU : 213- 218: erqva A-Gisi-A gfear YIAJ_ECOLI : 158- 165: plycs AmGkiymA fghpd YIAJ_HAEIN : 150- 157: klycs AmGkiflA yekkv YJHI_ECOLI : 139- 146: elhit AlGkallA wktre T 20: 11.5102 14( 9) A-x(1,2)-I-x(0,1)-S Occurences: 14(9) GYLR_STRCO : 2- 7: m ArnIqS leraa GYLR_STRGR : 2- 7: m ArnIqS leraa ICLR_ECOLI : 236- 239: hrepf Aa-I-S isgpi ICLR_ECOLI : 237- 241: repfa AisI-S gpisr ICLR_SALTY : 237- 241: repfa AlsI-S gprsr KDGR_ERWCH : 292- 296: mlhta ArnI-S dqmgy YCSO_BACSU : 139- 144: yagac ArsIlS flpre YCSO_BACSU : 212- 216: herqv AagI-S iagfe YCSO_BACSU : 213- 216: erqva Ag-I-S iagfe YCSO_BACSU : 240- 244: kvkda AlqI-S rk YIAJ_ECOLI : 237- 241: grvpy AvsI-S lstsr YIAJ_ECOLI : 263- 267: plret AqaI-S nelgf YIAJ_HAEIN : 256- 260: eirkt AeqI-S lelgy YJHI_ECOLI : 242- 246: llrkc AeqI-S yglgy Number of patterns evaluated by Pratt:2494 Total running time: 2 seconds