------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 10 sequences from file HTH_ASNC_FAMILY PATTERN CONSERVATION: CM: min Nr of Seqs to Match 10 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename HTH_ASNC_FAMILY.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: ASNC_ECOLI 152 ASNC_HAEIN 150 BKDR_PSEPU 161 LRP_ECOLI 164 LRP_HAEIN 166 LRP_KLEPN 164 LRP_SALTY 164 LRP_SERMA 164 Y224_HAEIN 168 YGDH_PYRFU 120 Pratt run started at Thu Feb 6 19:56:33 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 20.8503 10( 10) D-x(2)-D-x(2)-I-L-x(2)-L 2: 20.3503 10( 10) D-x(1,2)-D-x(2)-I-L-x(2)-L 3: 19.8503 10( 10) D-x(2)-D-x(1,2)-I-x(0,1)-L-x(2)-L 4: 16.6802 10( 10) D-x(2)-I-L-x(2)-L 5: 15.6802 11( 10) D-x(1,2)-I-x(0,1)-L-x(2)-L 6: 15.1802 11( 10) S-x(1,3)-T-x(3,4)-R-V 7: 12.5102 10( 10) I-L-x(2)-L 8: 12.0102 10( 10) T-x(3,4)-R-V 9: 12.0102 12( 10) I-x(0,1)-L-x(2)-L 10: 11.5102 15( 10) D-x(3,4)-L-x(1,2)-L 11: 11.5102 12( 10) L-x(0,1)-E-x(2,3)-E 12: 11.0102 10( 10) F-x(3,4)-L-x(0,2)-K 13: 11.0102 10( 10) L-x(3,4)-D-x(2,4)-I 14: 11.0102 10( 10) V-x(3,5)-Y-x(3,4)-G 15: 11.0102 16( 10) A-x(2,4)-L-x(1,2)-E 16: 11.0102 10( 10) E-x(0,1)-V-x(1,3)-E 17: 11.0102 11( 10) S-x(1,2)-T-x(3,5)-V 18: 11.0102 10( 10) L-x(0,2)-G-x(2,3)-V 19: 11.0102 16( 10) I-x(3,4)-L-x(0,2)-S 20: 11.0102 11( 10) S-x(1,2)-T-x(2,4)-R Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 82.0790 10( 10) D-x(2)-D-x(2)-I-L-[ENR]-x-L-x(2)-[DN]-[AG]-x(2)-[APST]-x(2)-[DE]-[ILM]-[AS]-[EKR]-x-[FLV]-[GN]-x-S-x-[AGT]-[APT]-x(3)-R-V-x(2)-[LM]-x(3)-G-[FIV]-I B 2: 81.5790 10( 10) D-x(1,2)-D-x(2)-I-L-[ENR]-x-L-x(2)-[DN]-[AG]-x(2)-[APST]-x(2)-[DE]-[ILM]-[AS]-[EKR]-x-[FLV]-[GN]-x-S-x-[AGT]-[APT]-x(3)-R-V-x(2)-[LM]-x(3)-G-[FIV]-I C 3: 81.0790 10( 10) D-x(2)-D-x(1,2)-I-x(0,1)-L-[ENR]-x-L-x(2)-[DN]-[AG]-x(2)-[APST]-x(2)-[DE]-[ILM]-[AS]-[EKR]-x-[FLV]-[GN]-x-S-x-[AGT]-[APT]-x(3)-R-V-x(2)-[LM]-x(3)-G-[FIV]-I D 4: 77.9090 10( 10) D-x(2)-I-L-[ENR]-x-L-x(2)-[DN]-[AG]-x(2)-[APST]-x(2)-[DE]-[ILM]-[AS]-[EKR]-x-[FLV]-[GN]-x-S-x-[AGT]-[APT]-x(3)-R-V-x(2)-[LM]-x(3)-G-[FIV]-I E 5: 76.9090 10( 10) D-x(1,2)-I-x(0,1)-L-[ENR]-x-L-x(2)-[DN]-[AG]-x(2)-[APST]-x(2)-[DE]-[ILM]-[AS]-[EKR]-x-[FLV]-[GN]-x-S-x-[AGT]-[APT]-x(3)-R-V-x(2)-[LM]-x(3)-G-[FIV]-I F 6: 73.7389 10( 10) I-L-[ENR]-x-L-x(2)-[DN]-[AG]-x(2)-[APST]-x(2)-[DE]-[ILM]-[AS]-[EKR]-x-[FLV]-[GN]-x-S-x-[AGT]-[APT]-x(3)-R-V-x(2)-[LM]-x(3)-G-[FIV]-I G 7: 73.2389 11( 10) I-x(0,1)-L-[ENR]-x-L-x(2)-[DN]-[AG]-x(2)-[APST]-x(2)-[DE]-[ILM]-[AS]-[EKR]-x-[FLV]-[GN]-x-S-x-[AGT]-[APT]-x(3)-R-V-x(2)-[LM]-x(3)-G-[FIV]-I H 8: 29.7207 11( 10) S-x(1,3)-T-x(3,4)-R-V-x(2)-[LM]-x(3)-G-[FIV]-I I 9: 29.7207 10( 10) S-x(1,2)-T-x(2,4)-R-V-x(2)-[LM]-x(3)-G-[FIV]-I J 10: 26.5507 10( 10) T-x(3,4)-R-V-x(2)-[LM]-x(3)-G-[FIV]-I K 11: 25.5507 10( 10) S-x(1,2)-T-x(3,5)-V-x(2)-[LM]-x(3)-G-[FIV]-I L 12: 21.5532 10( 10) D-x(3,4)-L-x(1,2)-L-[EQST]-x(2)-[ADG]-x(2)-[PST]-x(4)-[AST] M 13: 15.6802 10( 10) D-x(2)-D-x(1,2)-I-x(0,1)-L N 14: 11.5102 11( 10) D-x(1,2)-I-x(0,1)-L O 15: 11.5102 12( 10) L-x(0,1)-E-x(2,3)-E P 16: 11.0102 11( 10) S-x(1,3)-T-x(3,4)-R Q 17: 11.0102 10( 10) F-x(3,4)-L-x(0,2)-K R 18: 11.0102 10( 10) L-x(3,4)-D-x(2,4)-I S 19: 11.0102 10( 10) V-x(3,5)-Y-x(3,4)-G T 20: 11.0102 16( 10) A-x(2,4)-L-x(1,2)-E Best patterns with alignements: fitness hits(seqs) Pattern A 1: 82.0790 10( 10) D-x(2)-D-x(2)-I-L-[ENR]-x-L-x(2)-[DN]-[AG]-x(2)-[APST]-x(2)-[DE]-[ILM]-[AS]-[EKR]-x-[FLV]-[GN]-x-S-x-[AGT]-[APT]-x(3)-R-V-x(2)-[LM]-x(3)-G-[FIV]-I Occurences: 10(10) ASNC_ECOLI : 7- 52: enyli DnlDrgILEaLmgNArtAyaELAKqFGvSpGTihvRVekMkqaGII tgari ASNC_HAEIN : 5- 50: mhni DslDqkILRvLtkDArtPyaEMAKnFGvSpGTihvRVekMrqsGII kgtkv BKDR_PSEPU : 5- 50: mrkl DrtDigILNsLqeNAriTnaELARsVNlSpTPcfnRVraMeelGVI rqqvt LRP_ECOLI : 13- 58: pgkdl DriDrnILNeLqkDGriSnvELSKrVGlSpTPcleRVrrLerqGFI qgyta LRP_HAEIN : 17- 62: rnkal DaiDikILNeLqrNGkiSniDLSKkVGlSpTPcleRVkrLekqGVI mgyra LRP_KLEPN : 13- 58: pgkdl DriDrnILNeLqkDGriSnvELSKrVGlSpTPcleRVrrLerqGFI qgyta LRP_SALTY : 13- 58: pgkdl DriDrnILNeLqkDGriSnvELSKrVGlSpTPcleRVrrLerqGFI qgyta LRP_SERMA : 13- 58: pgkdl DriDrnILNeLqkDGriSnvELSKrVGlSpTPcleRVrrLerqGFI qgyta Y224_HAEIN : 20- 65: lmqtl DklDrhILNvLqqDAmiPlkELSEkVNsSvATcqrRVqsLtdsGII tkrva YGDH_PYRFU : 3- 48: mi DerDkiILEiLekDArtPftEIAKkLGiSeTAvrkRVkaLeekGII egyti B 2: 81.5790 10( 10) D-x(1,2)-D-x(2)-I-L-[ENR]-x-L-x(2)-[DN]-[AG]-x(2)-[APST]-x(2)-[DE]-[ILM]-[AS]-[EKR]-x-[FLV]-[GN]-x-S-x-[AGT]-[APT]-x(3)-R-V-x(2)-[LM]-x(3)-G-[FIV]-I Occurences: 10(10) ASNC_ECOLI : 7- 52: enyli DnlDrgILEaLmgNArtAyaELAKqFGvSpGTihvRVekMkqaGII tgari ASNC_HAEIN : 5- 50: mhni DslDqkILRvLtkDArtPyaEMAKnFGvSpGTihvRVekMrqsGII kgtkv BKDR_PSEPU : 5- 50: mrkl DrtDigILNsLqeNAriTnaELARsVNlSpTPcfnRVraMeelGVI rqqvt LRP_ECOLI : 13- 58: pgkdl DriDrnILNeLqkDGriSnvELSKrVGlSpTPcleRVrrLerqGFI qgyta LRP_HAEIN : 17- 62: rnkal DaiDikILNeLqrNGkiSniDLSKkVGlSpTPcleRVkrLekqGVI mgyra LRP_KLEPN : 13- 58: pgkdl DriDrnILNeLqkDGriSnvELSKrVGlSpTPcleRVrrLerqGFI qgyta LRP_SALTY : 13- 58: pgkdl DriDrnILNeLqkDGriSnvELSKrVGlSpTPcleRVrrLerqGFI qgyta LRP_SERMA : 13- 58: pgkdl DriDrnILNeLqkDGriSnvELSKrVGlSpTPcleRVrrLerqGFI qgyta Y224_HAEIN : 20- 65: lmqtl DklDrhILNvLqqDAmiPlkELSEkVNsSvATcqrRVqsLtdsGII tkrva YGDH_PYRFU : 3- 48: mi DerDkiILEiLekDArtPftEIAKkLGiSeTAvrkRVkaLeekGII egyti C 3: 81.0790 10( 10) D-x(2)-D-x(1,2)-I-x(0,1)-L-[ENR]-x-L-x(2)-[DN]-[AG]-x(2)-[APST]-x(2)-[DE]-[ILM]-[AS]-[EKR]-x-[FLV]-[GN]-x-S-x-[AGT]-[APT]-x(3)-R-V-x(2)-[LM]-x(3)-G-[FIV]-I Occurences: 10(10) ASNC_ECOLI : 7- 52: enyli DnlDrgI-LEaLmgNArtAyaELAKqFGvSpGTihvRVekMkqaGII tgari ASNC_HAEIN : 5- 50: mhni DslDqkI-LRvLtkDArtPyaEMAKnFGvSpGTihvRVekMrqsGII kgtkv BKDR_PSEPU : 5- 50: mrkl DrtDigI-LNsLqeNAriTnaELARsVNlSpTPcfnRVraMeelGVI rqqvt LRP_ECOLI : 13- 58: pgkdl DriDrnI-LNeLqkDGriSnvELSKrVGlSpTPcleRVrrLerqGFI qgyta LRP_HAEIN : 17- 62: rnkal DaiDikI-LNeLqrNGkiSniDLSKkVGlSpTPcleRVkrLekqGVI mgyra LRP_KLEPN : 13- 58: pgkdl DriDrnI-LNeLqkDGriSnvELSKrVGlSpTPcleRVrrLerqGFI qgyta LRP_SALTY : 13- 58: pgkdl DriDrnI-LNeLqkDGriSnvELSKrVGlSpTPcleRVrrLerqGFI qgyta LRP_SERMA : 13- 58: pgkdl DriDrnI-LNeLqkDGriSnvELSKrVGlSpTPcleRVrrLerqGFI qgyta Y224_HAEIN : 20- 65: lmqtl DklDrhI-LNvLqqDAmiPlkELSEkVNsSvATcqrRVqsLtdsGII tkrva YGDH_PYRFU : 3- 48: mi DerDkiI-LEiLekDArtPftEIAKkLGiSeTAvrkRVkaLeekGII egyti YGDH_PYRFU : 3- 48: mi DerDk-IiLEiLekDArtPftEIAKkLGiSeTAvrkRVkaLeekGII egyti D 4: 77.9090 10( 10) D-x(2)-I-L-[ENR]-x-L-x(2)-[DN]-[AG]-x(2)-[APST]-x(2)-[DE]-[ILM]-[AS]-[EKR]-x-[FLV]-[GN]-x-S-x-[AGT]-[APT]-x(3)-R-V-x(2)-[LM]-x(3)-G-[FIV]-I Occurences: 10(10) ASNC_ECOLI : 10- 52: lidnl DrgILEaLmgNArtAyaELAKqFGvSpGTihvRVekMkqaGII tgari ASNC_HAEIN : 8- 50: nidsl DqkILRvLtkDArtPyaEMAKnFGvSpGTihvRVekMrqsGII kgtkv BKDR_PSEPU : 8- 50: kldrt DigILNsLqeNAriTnaELARsVNlSpTPcfnRVraMeelGVI rqqvt LRP_ECOLI : 16- 58: dldri DrnILNeLqkDGriSnvELSKrVGlSpTPcleRVrrLerqGFI qgyta LRP_HAEIN : 20- 62: aldai DikILNeLqrNGkiSniDLSKkVGlSpTPcleRVkrLekqGVI mgyra LRP_KLEPN : 16- 58: dldri DrnILNeLqkDGriSnvELSKrVGlSpTPcleRVrrLerqGFI qgyta LRP_SALTY : 16- 58: dldri DrnILNeLqkDGriSnvELSKrVGlSpTPcleRVrrLerqGFI qgyta LRP_SERMA : 16- 58: dldri DrnILNeLqkDGriSnvELSKrVGlSpTPcleRVrrLerqGFI qgyta Y224_HAEIN : 23- 65: tldkl DrhILNvLqqDAmiPlkELSEkVNsSvATcqrRVqsLtdsGII tkrva YGDH_PYRFU : 6- 48: mider DkiILEiLekDArtPftEIAKkLGiSeTAvrkRVkaLeekGII egyti E 5: 76.9090 10( 10) D-x(1,2)-I-x(0,1)-L-[ENR]-x-L-x(2)-[DN]-[AG]-x(2)-[APST]-x(2)-[DE]-[ILM]-[AS]-[EKR]-x-[FLV]-[GN]-x-S-x-[AGT]-[APT]-x(3)-R-V-x(2)-[LM]-x(3)-G-[FIV]-I Occurences: 10(10) ASNC_ECOLI : 10- 52: lidnl DrgI-LEaLmgNArtAyaELAKqFGvSpGTihvRVekMkqaGII tgari ASNC_HAEIN : 8- 50: nidsl DqkI-LRvLtkDArtPyaEMAKnFGvSpGTihvRVekMrqsGII kgtkv BKDR_PSEPU : 8- 50: kldrt DigI-LNsLqeNAriTnaELARsVNlSpTPcfnRVraMeelGVI rqqvt LRP_ECOLI : 16- 58: dldri DrnI-LNeLqkDGriSnvELSKrVGlSpTPcleRVrrLerqGFI qgyta LRP_HAEIN : 20- 62: aldai DikI-LNeLqrNGkiSniDLSKkVGlSpTPcleRVkrLekqGVI mgyra LRP_KLEPN : 16- 58: dldri DrnI-LNeLqkDGriSnvELSKrVGlSpTPcleRVrrLerqGFI qgyta LRP_SALTY : 16- 58: dldri DrnI-LNeLqkDGriSnvELSKrVGlSpTPcleRVrrLerqGFI qgyta LRP_SERMA : 16- 58: dldri DrnI-LNeLqkDGriSnvELSKrVGlSpTPcleRVrrLerqGFI qgyta Y224_HAEIN : 23- 65: tldkl DrhI-LNvLqqDAmiPlkELSEkVNsSvATcqrRVqsLtdsGII tkrva YGDH_PYRFU : 6- 48: mider DkiI-LEiLekDArtPftEIAKkLGiSeTAvrkRVkaLeekGII egyti YGDH_PYRFU : 6- 48: mider Dk-IiLEiLekDArtPftEIAKkLGiSeTAvrkRVkaLeekGII egyti F 6: 73.7389 10( 10) I-L-[ENR]-x-L-x(2)-[DN]-[AG]-x(2)-[APST]-x(2)-[DE]-[ILM]-[AS]-[EKR]-x-[FLV]-[GN]-x-S-x-[AGT]-[APT]-x(3)-R-V-x(2)-[LM]-x(3)-G-[FIV]-I Occurences: 10(10) ASNC_ECOLI : 13- 52: nldrg ILEaLmgNArtAyaELAKqFGvSpGTihvRVekMkqaGII tgari ASNC_HAEIN : 11- 50: sldqk ILRvLtkDArtPyaEMAKnFGvSpGTihvRVekMrqsGII kgtkv BKDR_PSEPU : 11- 50: rtdig ILNsLqeNAriTnaELARsVNlSpTPcfnRVraMeelGVI rqqvt LRP_ECOLI : 19- 58: ridrn ILNeLqkDGriSnvELSKrVGlSpTPcleRVrrLerqGFI qgyta LRP_HAEIN : 23- 62: aidik ILNeLqrNGkiSniDLSKkVGlSpTPcleRVkrLekqGVI mgyra LRP_KLEPN : 19- 58: ridrn ILNeLqkDGriSnvELSKrVGlSpTPcleRVrrLerqGFI qgyta LRP_SALTY : 19- 58: ridrn ILNeLqkDGriSnvELSKrVGlSpTPcleRVrrLerqGFI qgyta LRP_SERMA : 19- 58: ridrn ILNeLqkDGriSnvELSKrVGlSpTPcleRVrrLerqGFI qgyta Y224_HAEIN : 26- 65: kldrh ILNvLqqDAmiPlkELSEkVNsSvATcqrRVqsLtdsGII tkrva YGDH_PYRFU : 9- 48: erdki ILEiLekDArtPftEIAKkLGiSeTAvrkRVkaLeekGII egyti G 7: 73.2389 11( 10) I-x(0,1)-L-[ENR]-x-L-x(2)-[DN]-[AG]-x(2)-[APST]-x(2)-[DE]-[ILM]-[AS]-[EKR]-x-[FLV]-[GN]-x-S-x-[AGT]-[APT]-x(3)-R-V-x(2)-[LM]-x(3)-G-[FIV]-I Occurences: 11(10) ASNC_ECOLI : 13- 52: nldrg I-LEaLmgNArtAyaELAKqFGvSpGTihvRVekMkqaGII tgari ASNC_HAEIN : 11- 50: sldqk I-LRvLtkDArtPyaEMAKnFGvSpGTihvRVekMrqsGII kgtkv BKDR_PSEPU : 11- 50: rtdig I-LNsLqeNAriTnaELARsVNlSpTPcfnRVraMeelGVI rqqvt LRP_ECOLI : 19- 58: ridrn I-LNeLqkDGriSnvELSKrVGlSpTPcleRVrrLerqGFI qgyta LRP_HAEIN : 23- 62: aidik I-LNeLqrNGkiSniDLSKkVGlSpTPcleRVkrLekqGVI mgyra LRP_KLEPN : 19- 58: ridrn I-LNeLqkDGriSnvELSKrVGlSpTPcleRVrrLerqGFI qgyta LRP_SALTY : 19- 58: ridrn I-LNeLqkDGriSnvELSKrVGlSpTPcleRVrrLerqGFI qgyta LRP_SERMA : 19- 58: ridrn I-LNeLqkDGriSnvELSKrVGlSpTPcleRVrrLerqGFI qgyta Y224_HAEIN : 26- 65: kldrh I-LNvLqqDAmiPlkELSEkVNsSvATcqrRVqsLtdsGII tkrva YGDH_PYRFU : 8- 48: derdk IiLEiLekDArtPftEIAKkLGiSeTAvrkRVkaLeekGII egyti YGDH_PYRFU : 9- 48: erdki I-LEiLekDArtPftEIAKkLGiSeTAvrkRVkaLeekGII egyti H 8: 29.7207 11( 10) S-x(1,3)-T-x(3,4)-R-V-x(2)-[LM]-x(3)-G-[FIV]-I Occurences: 11(10) ASNC_ECOLI : 35- 52: kqfgv Spg-Tihv-RVekMkqaGII tgari ASNC_HAEIN : 33- 50: knfgv Spg-Tihv-RVekMrqsGII kgtkv BKDR_PSEPU : 33- 50: rsvnl Sp--TpcfnRVraMeelGVI rqqvt LRP_ECOLI : 41- 58: krvgl Sp--TpcleRVrrLerqGFI qgyta LRP_HAEIN : 45- 62: kkvgl Sp--TpcleRVkrLekqGVI mgyra LRP_KLEPN : 41- 58: krvgl Sp--TpcleRVrrLerqGFI qgyta LRP_SALTY : 41- 58: krvgl Sp--TpcleRVrrLerqGFI qgyta LRP_SERMA : 41- 58: krvgl Sp--TpcleRVrrLerqGFI qgyta Y224_HAEIN : 47- 65: sekvn SsvaTcqr-RVqsLtdsGII tkrva Y224_HAEIN : 48- 65: ekvns Sva-Tcqr-RVqsLtdsGII tkrva YGDH_PYRFU : 31- 48: kklgi Se--TavrkRVkaLeekGII egyti I 9: 29.7207 10( 10) S-x(1,2)-T-x(2,4)-R-V-x(2)-[LM]-x(3)-G-[FIV]-I Occurences: 10(10) ASNC_ECOLI : 35- 52: kqfgv SpgTihv-RVekMkqaGII tgari ASNC_HAEIN : 33- 50: knfgv SpgTihv-RVekMrqsGII kgtkv BKDR_PSEPU : 33- 50: rsvnl Sp-TpcfnRVraMeelGVI rqqvt LRP_ECOLI : 41- 58: krvgl Sp-TpcleRVrrLerqGFI qgyta LRP_HAEIN : 45- 62: kkvgl Sp-TpcleRVkrLekqGVI mgyra LRP_KLEPN : 41- 58: krvgl Sp-TpcleRVrrLerqGFI qgyta LRP_SALTY : 41- 58: krvgl Sp-TpcleRVrrLerqGFI qgyta LRP_SERMA : 41- 58: krvgl Sp-TpcleRVrrLerqGFI qgyta Y224_HAEIN : 48- 65: ekvns SvaTcqr-RVqsLtdsGII tkrva YGDH_PYRFU : 31- 48: kklgi Se-TavrkRVkaLeekGII egyti J 10: 26.5507 10( 10) T-x(3,4)-R-V-x(2)-[LM]-x(3)-G-[FIV]-I Occurences: 10(10) ASNC_ECOLI : 38- 52: gvspg Tihv-RVekMkqaGII tgari ASNC_HAEIN : 36- 50: gvspg Tihv-RVekMrqsGII kgtkv BKDR_PSEPU : 35- 50: vnlsp TpcfnRVraMeelGVI rqqvt LRP_ECOLI : 43- 58: vglsp TpcleRVrrLerqGFI qgyta LRP_HAEIN : 47- 62: vglsp TpcleRVkrLekqGVI mgyra LRP_KLEPN : 43- 58: vglsp TpcleRVrrLerqGFI qgyta LRP_SALTY : 43- 58: vglsp TpcleRVrrLerqGFI qgyta LRP_SERMA : 43- 58: vglsp TpcleRVrrLerqGFI qgyta Y224_HAEIN : 51- 65: nssva Tcqr-RVqsLtdsGII tkrva YGDH_PYRFU : 33- 48: lgise TavrkRVkaLeekGII egyti K 11: 25.5507 10( 10) S-x(1,2)-T-x(3,5)-V-x(2)-[LM]-x(3)-G-[FIV]-I Occurences: 10(10) ASNC_ECOLI : 35- 52: kqfgv SpgTihvr-VekMkqaGII tgari ASNC_HAEIN : 33- 50: knfgv SpgTihvr-VekMrqsGII kgtkv BKDR_PSEPU : 33- 50: rsvnl Sp-TpcfnrVraMeelGVI rqqvt LRP_ECOLI : 41- 58: krvgl Sp-TpclerVrrLerqGFI qgyta LRP_HAEIN : 45- 62: kkvgl Sp-TpclerVkrLekqGVI mgyra LRP_KLEPN : 41- 58: krvgl Sp-TpclerVrrLerqGFI qgyta LRP_SALTY : 41- 58: krvgl Sp-TpclerVrrLerqGFI qgyta LRP_SERMA : 41- 58: krvgl Sp-TpclerVrrLerqGFI qgyta Y224_HAEIN : 48- 65: ekvns SvaTcqrr-VqsLtdsGII tkrva YGDH_PYRFU : 31- 48: kklgi Se-TavrkrVkaLeekGII egyti L 12: 21.5532 10( 10) D-x(3,4)-L-x(1,2)-L-[EQST]-x(2)-[ADG]-x(2)-[PST]-x(4)-[AST] Occurences: 10(10) ASNC_ECOLI : 81- 101: lksak DypsaLakLEslDevTeayyT tghys ASNC_HAEIN : 8- 27: nidsl Dqki-LrvLTkdArtPyaemA knfgv BKDR_PSEPU : 8- 27: kldrt Digi-LnsLQenAriTnaelA rsvnl LRP_ECOLI : 16- 35: dldri Drni-LneLQkdGriSnvelS krvgl LRP_HAEIN : 20- 39: aldai Diki-LneLQrnGkiSnidlS kkvgl LRP_KLEPN : 16- 35: dldri Drni-LneLQkdGriSnvelS krvgl LRP_SALTY : 16- 35: dldri Drni-LneLQkdGriSnvelS krvgl LRP_SERMA : 16- 35: dldri Drni-LneLQkdGriSnvelS krvgl Y224_HAEIN : 23- 42: tldkl Drhi-LnvLQqdAmiPlkelS ekvns YGDH_PYRFU : 6- 25: mider Dkii-LeiLEkdArtPfteiA kklgi M 13: 15.6802 10( 10) D-x(2)-D-x(1,2)-I-x(0,1)-L Occurences: 10(10) ASNC_ECOLI : 7- 14: enyli DnlDrgI-L ealmg ASNC_HAEIN : 5- 12: mhni DslDqkI-L rvltk BKDR_PSEPU : 5- 12: mrkl DrtDigI-L nslqe LRP_ECOLI : 13- 20: pgkdl DriDrnI-L nelqk LRP_HAEIN : 17- 24: rnkal DaiDikI-L nelqr LRP_KLEPN : 13- 20: pgkdl DriDrnI-L nelqk LRP_SALTY : 13- 20: pgkdl DriDrnI-L nelqk LRP_SERMA : 13- 20: pgkdl DriDrnI-L nelqk Y224_HAEIN : 20- 27: lmqtl DklDrhI-L nvlqq YGDH_PYRFU : 3- 10: mi DerDkiI-L eilek YGDH_PYRFU : 3- 10: mi DerDk-IiL eilek N 14: 11.5102 11( 10) D-x(1,2)-I-x(0,1)-L Occurences: 11(10) ASNC_ECOLI : 10- 14: lidnl DrgI-L ealmg ASNC_HAEIN : 8- 12: nidsl DqkI-L rvltk BKDR_PSEPU : 8- 12: kldrt DigI-L nslqe LRP_ECOLI : 16- 20: dldri DrnI-L nelqk LRP_HAEIN : 20- 24: aldai DikI-L nelqr LRP_KLEPN : 16- 20: dldri DrnI-L nelqk LRP_SALTY : 16- 20: dldri DrnI-L nelqk LRP_SERMA : 16- 20: dldri DrnI-L nelqk Y224_HAEIN : 23- 27: tldkl DrhI-L nvlqq Y224_HAEIN : 33- 38: nvlqq DamIpL kelse YGDH_PYRFU : 6- 10: mider DkiI-L eilek YGDH_PYRFU : 6- 10: mider Dk-IiL eilek O 15: 11.5102 12( 10) L-x(0,1)-E-x(2,3)-E Occurences: 12(10) ASNC_ECOLI : 89- 94: salak L-EsldE vteay ASNC_ECOLI : 92- 97: akles LdEvt-E ayytt ASNC_HAEIN : 87- 92: kvikk L-EsfdE vveay BKDR_PSEPU : 74- 79: fihvs L-EkqvE qslhr LRP_ECOLI : 100- 105: tavqk LeEiq-E chlvs LRP_ECOLI : 100- 105: tavqk L-EeiqE chlvs LRP_HAEIN : 104- 109: aaiqa LeEiq-E chlvs LRP_HAEIN : 104- 109: aaiqa L-EeiqE chlvs LRP_KLEPN : 100- 105: savqk LeEiq-E chlvs LRP_KLEPN : 100- 105: savqk L-EeiqE chlvs LRP_SALTY : 100- 105: aavqk LeEiq-E chlvs LRP_SALTY : 100- 105: aavqk L-EeiqE chlvs LRP_SERMA : 100- 105: tavqk LeEiq-E chlvs LRP_SERMA : 100- 105: tavqk L-EeiqE chlvs Y224_HAEIN : 38- 43: damip LkEls-E kvnss YGDH_PYRFU : 10- 14: rdkii L-Eil-E kdart YGDH_PYRFU : 77- 82: tkpek LfEva-E klkey P 16: 11.0102 11( 10) S-x(1,3)-T-x(3,4)-R Occurences: 11(10) ASNC_ECOLI : 35- 42: kqfgv Spg-Tihv-R vekmk ASNC_HAEIN : 33- 40: knfgv Spg-Tihv-R vekmr BKDR_PSEPU : 33- 40: rsvnl Sp--TpcfnR vrame LRP_ECOLI : 41- 48: krvgl Sp--TpcleR vrrle LRP_HAEIN : 45- 52: kkvgl Sp--TpcleR vkrle LRP_KLEPN : 41- 48: krvgl Sp--TpcleR vrrle LRP_SALTY : 41- 48: krvgl Sp--TpcleR vrrle LRP_SERMA : 41- 48: krvgl Sp--TpcleR vrrle Y224_HAEIN : 47- 55: sekvn SsvaTcqr-R vqslt Y224_HAEIN : 48- 55: ekvns Sva-Tcqr-R vqslt YGDH_PYRFU : 31- 38: kklgi Se--TavrkR vkale Q 17: 11.0102 10( 10) F-x(3,4)-L-x(0,2)-K Occurences: 10(10) ASNC_ECOLI : 71- 77: ydvgc FigiiL--K sakdy ASNC_HAEIN : 69- 75: ydvcc FigiiL--K sakdy BKDR_PSEPU : 69- 76: ldvnv FihvsLe-K qveqs LRP_ECOLI : 113- 118: lvsgd Fdyl-L--K trvpd LRP_HAEIN : 117- 122: lvsgd Fdyl-L--K trvad LRP_KLEPN : 113- 118: lvsgd Fdyl-L--K trvpd LRP_SALTY : 113- 118: lvsgd Fdyl-L--K trvpd LRP_SERMA : 113- 118: lvsgd Fdyl-L--K trvpd Y224_HAEIN : 122- 129: sgdyd Fmll-LhaK dmesy YGDH_PYRFU : 114- 120: qgrgg FsgdnL--K R 18: 11.0102 10( 10) L-x(3,4)-D-x(2,4)-I Occurences: 10(10) ASNC_ECOLI : 5- 13: meny LidnlDrg--I lealm ASNC_HAEIN : 74- 84: figii LksakDyekvI kkles BKDR_PSEPU : 4- 11: mrk Ldrt-Dig--I lnslq LRP_ECOLI : 12- 19: rpgkd Ldri-Drn--I lnelq LRP_HAEIN : 16- 23: krnka Ldai-Dik--I lnelq LRP_KLEPN : 12- 19: rpgkd Ldri-Drn--I lnelq LRP_SALTY : 12- 19: rpgkd Ldri-Drn--I lnelq LRP_SERMA : 12- 19: rpgkd Ldri-Drn--I lnelq Y224_HAEIN : 19- 26: ylmqt Ldkl-Drh--I lnvlq YGDH_PYRFU : 95- 102: vkely Lssg-Dhm--I machm S 19: 11.0102 10( 10) V-x(3,5)-Y-x(3,4)-G Occurences: 10(10) ASNC_ECOLI : 95- 103: eslde Vtea--Yytt-G hysif ASNC_HAEIN : 93- 101: esfde Vvea--Yytt-G nysif BKDR_PSEPU : 95- 103: aerpe Vmec--Ylmt-G dpdyl LRP_ECOLI : 121- 132: llktr VpdmsaYrkllG etllr LRP_HAEIN : 125- 136: llktr VadmaeYrkllG ttllr LRP_KLEPN : 121- 132: llktr VpdmsaYrkllG etllr LRP_SALTY : 121- 132: llktr VpdmsaYrkllG etllr LRP_SERMA : 121- 132: llktr VpdmsaYrkllG etllr Y224_HAEIN : 110- 118: rqede Vvsc--Yeis-G dydfm YGDH_PYRFU : 90- 98: keydf Vkel--Ylss-G dhmim T 20: 11.0102 16( 10) A-x(2,4)-L-x(1,2)-E Occurences: 16(10) ASNC_ECOLI : 87- 94: ypsal AklesLd-E vteay ASNC_HAEIN : 122- 130: lhsvl AtkiqLidE iqste BKDR_PSEPU : 154- 161: alplp AngmtLr-E LRP_ECOLI : 96- 102: eqfnt Avqk-Le-E iqech LRP_ECOLI : 126- 133: vpdms AyrklLg-E tllrl LRP_ECOLI : 126- 133: vpdms Ayrk-LlgE tllrl LRP_HAEIN : 99- 106: feefn AaiqaLe-E iqech LRP_HAEIN : 100- 106: eefna Aiqa-Le-E iqech LRP_KLEPN : 96- 102: eqfns Avqk-Le-E iqech LRP_KLEPN : 126- 133: vpdms AyrklLg-E tllrl LRP_KLEPN : 126- 133: vpdms Ayrk-LlgE tllrl LRP_SALTY : 95- 102: feqfn AavqkLe-E iqech LRP_SALTY : 96- 102: eqfna Avqk-Le-E iqech LRP_SALTY : 126- 133: vpdms AyrklLg-E tllrl LRP_SALTY : 126- 133: vpdms Ayrk-LlgE tllrl LRP_SERMA : 96- 102: eqfnt Avqk-Le-E iqech LRP_SERMA : 126- 133: vpdms AyrklLg-E tllrl LRP_SERMA : 126- 133: vpdms Ayrk-LlgE tllrl Y224_HAEIN : 34- 40: vlqqd Amip-Lk-E lsekv YGDH_PYRFU : 81- 86: klfev Aek--Lk-E ydfvk Number of patterns evaluated by Pratt:613 Total running time: 0 seconds