------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 9 sequences from file HTH_ARSR_FAMILY PATTERN CONSERVATION: CM: min Nr of Seqs to Match 9 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename HTH_ARSR_FAMILY.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: ARSE_ECOLI 117 ARSR_ECOLI 117 ARSR_STAAU 104 ARSR_STAXY 104 CADC_BACFI 122 CADC_STAAU 122 CADF_STAAU 121 SMTB_SYNP7 122 YQCJ_BACSU 105 Pratt run started at Thu Feb 6 19:56:32 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 16.1802 9( 9) K-x(0,1)-G-x(4)-Y-x-L 2: 12.5102 9( 9) G-x(4)-Y-x-L 3: 12.5102 9( 9) R-K-x-G 4: 12.5102 9( 9) L-x(4)-E-x-C 5: 12.5102 10( 9) S-x(2)-L-x(2)-L 6: 12.0102 9( 9) L-x-D-x(0,1)-E 7: 12.0102 13( 9) L-x(3,4)-E-x-C 8: 12.0102 13( 9) S-x(1,2)-L-x(2)-L 9: 12.0102 9( 9) L-x-D-x(2,3)-R 10: 11.5102 9( 9) S-x(0,1)-H-x(3,4)-L 11: 11.5102 13( 9) S-x(2,3)-L-x(2,3)-L 12: 11.0102 14( 9) L-x(4,5)-L-x(1,3)-E 13: 11.0102 14( 9) L-x(2,4)-L-x(2,3)-E 14: 11.0102 16( 9) L-x(2,4)-L-x(0,1)-D 15: 10.5102 10( 9) S-x(0,2)-L-x(2,4)-E 16: 10.5102 11( 9) A-x(1,3)-L-x(1,3)-E 17: 10.5102 13( 9) L-x(1,3)-D-x(0,2)-E 18: 8.3401 13( 9) K-x-G 19: 8.3401 20( 9) I-x(3)-L 20: 8.3401 19( 9) L-x-D Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 41.1506 9( 9) S-x(0,1)-H-x(3,4)-L-x(4)-[ILV]-[AILV]-x(2)-[ER]-x(2)-G-x(4)-Y-[DQRS]-L-[DGNQS]-x(3)-[ILPV]-x(2)-[AIL] B 2: 25.2328 9( 9) K-x(0,1)-G-x(4)-Y-[DQRS]-L-[DGNQS]-x(3)-[ILPV]-x(2)-[AIL] C 3: 21.5628 9( 9) G-x(4)-Y-[DQRS]-L-[DGNQS]-x(3)-[ILPV]-x(2)-[AIL] D 4: 21.2801 9( 9) L-[ADGS]-D-x(2,3)-R-x(2)-[ILM]-x(3)-L E 5: 17.1511 10( 9) I-x(3)-L-x(3)-[ADEGNS]-x(2)-[ACGV]-[ACSV]-x(2)-[ILV] F 6: 15.7498 9( 9) L-x(4)-E-x-C-x(2)-[DG] G 7: 14.6923 12( 9) L-x(3,4)-E-x-C-[ACV] H 8: 12.5737 10( 9) L-[ADGNSV]-D-[ENP] I 9: 12.5102 9( 9) R-K-x-G J 10: 12.5102 10( 9) S-x(2)-L-x(2)-L K 11: 12.0102 9( 9) L-x-D-x(0,1)-E L 12: 12.0102 13( 9) S-x(1,2)-L-x(2)-L M 13: 11.5102 13( 9) S-x(2,3)-L-x(2,3)-L N 14: 11.0102 14( 9) L-x(4,5)-L-x(1,3)-E O 15: 11.0102 14( 9) L-x(2,4)-L-x(2,3)-E P 16: 11.0102 16( 9) L-x(2,4)-L-x(0,1)-D Q 17: 10.5634 9( 9) K-x-G-[DEKR] R 18: 10.5102 10( 9) S-x(0,2)-L-x(2,4)-E S 19: 10.5102 11( 9) A-x(1,3)-L-x(1,3)-E T 20: 10.5102 13( 9) L-x(1,3)-D-x(0,2)-E Best patterns with alignements: fitness hits(seqs) Pattern A 1: 41.1506 9( 9) S-x(0,1)-H-x(3,4)-L-x(4)-[ILV]-[AILV]-x(2)-[ER]-x(2)-G-x(4)-Y-[DQRS]-L-[DGNQS]-x(3)-[ILPV]-x(2)-[AIL] Occurences: 9(9) ARSE_ECOLI : 48- 81: sqpki SrHlal-LresgLLldRkqGkwvhYRLSphiPawA akiid ARSR_ECOLI : 48- 81: sqpki SrHlam-LresgILldRkqGkwvhYRLSphiPswA aqiie ARSR_STAAU : 47- 80: sqptl ShHmks-LvdneLVttRkdGnkhwYQLNhaiLddI iqnln ARSR_STAAU : 47- 80: sqptl S-HhmksLvdneLVttRkdGnkhwYQLNhaiLddI iqnln ARSR_STAXY : 47- 80: sqptl ShHmks-LvdneLVttRknGnkhmYQLNhefLdyI nqnld ARSR_STAXY : 47- 80: sqptl S-HhmksLvdneLVttRknGnkhmYQLNhefLdyI nqnld CADC_BACFI : 74- 107: taana ShHlrt-LhkqgIVryRkeGklafYSLDdehIrqI mmivl CADC_BACFI : 74- 107: taana S-HhlrtLhkqgIVryRkeGklafYSLDdehIrqI mmivl CADC_STAAU : 74- 107: tiana ShHlrt-LykqgVVnfRkeGklalYSLGdehIrqI mmial CADC_STAAU : 74- 107: tiana S-HhlrtLykqgVVnfRkeGklalYSLGdehIrqI mmial CADF_STAAU : 73- 106: stata ShHlrl-LknlgIAkyRkeGklvyYSLDdehVkqL vekaf CADF_STAAU : 73- 106: stata S-HhlrlLknlgIAkyRkeGklvyYSLDdehVkqL vekaf SMTB_SYNP7 : 77- 110: sesav S-HqlrsLrnlrLVsyRkqGrhvyYQLQdhhIvaL yqnal YQCJ_BACSU : 54- 87: tqskl SyHlki-LldanLItkEtkGtwsyYDLNdeeVngL lseel B 2: 25.2328 9( 9) K-x(0,1)-G-x(4)-Y-[DQRS]-L-[DGNQS]-x(3)-[ILPV]-x(2)-[AIL] Occurences: 9(9) ARSE_ECOLI : 64- 81: llldr KqGkwvhYRLSphiPawA akiid ARSR_ECOLI : 64- 81: illdr KqGkwvhYRLSphiPswA aqiie ARSR_STAAU : 63- 80: lvttr KdGnkhwYQLNhaiLddI iqnln ARSR_STAXY : 63- 80: lvttr KnGnkhmYQLNhefLdyI nqnld CADC_BACFI : 90- 107: ivryr KeGklafYSLDdehIrqI mmivl CADC_STAAU : 90- 107: vvnfr KeGklalYSLGdehIrqI mmial CADF_STAAU : 89- 106: iakyr KeGklvyYSLDdehVkqL vekaf SMTB_SYNP7 : 93- 110: lvsyr KqGrhvyYQLQdhhIvaL yqnal YQCJ_BACSU : 71- 87: itket K-GtwsyYDLNdeeVngL lseel C 3: 21.5628 9( 9) G-x(4)-Y-[DQRS]-L-[DGNQS]-x(3)-[ILPV]-x(2)-[AIL] Occurences: 9(9) ARSE_ECOLI : 66- 81: ldrkq GkwvhYRLSphiPawA akiid ARSR_ECOLI : 66- 81: ldrkq GkwvhYRLSphiPswA aqiie ARSR_STAAU : 65- 80: ttrkd GnkhwYQLNhaiLddI iqnln ARSR_STAXY : 65- 80: ttrkn GnkhmYQLNhefLdyI nqnld CADC_BACFI : 92- 107: ryrke GklafYSLDdehIrqI mmivl CADC_STAAU : 92- 107: nfrke GklalYSLGdehIrqI mmial CADF_STAAU : 91- 106: kyrke GklvyYSLDdehVkqL vekaf SMTB_SYNP7 : 95- 110: syrkq GrhvyYQLQdhhIvaL yqnal YQCJ_BACSU : 72- 87: tketk GtwsyYDLNdeeVngL lseel D 4: 21.2801 9( 9) L-[ADGS]-D-x(2,3)-R-x(2)-[ILM]-x(3)-L Occurences: 9(9) ARSE_ECOLI : 13- 25: qlfki LADet-RlgIvllL selge ARSR_ECOLI : 13- 25: qlfkn LSDet-RlgIvllL remge ARSR_STAAU : 13- 25: tilki LSDss-RleIldlL scgel ARSR_STAXY : 13- 25: tilkv LSDps-RleIldlL scgel CADC_BACFI : 99- 112: lafys LDDehiRqiMmivL ehkke CADC_STAAU : 99- 112: lalys LGDehiRqiMmiaL ahkke CADF_STAAU : 38- 50: kvfka LSDdt-RvkIayvL slege SMTB_SYNP7 : 43- 55: effav LADpn-RlrLlslL arsel YQCJ_BACSU : 19- 31: qkfka LADqk-RleImyeL cqrgk E 5: 17.1511 10( 9) I-x(3)-L-x(3)-[ADEGNS]-x(2)-[ACGV]-[ACSV]-x(2)-[ILV] Occurences: 10(9) ARSE_ECOLI : 21- 36: etrlg IvllLselGelCVcdL ctald ARSR_ECOLI : 21- 36: etrlg IvllLremGelCVcdL cmald ARSR_STAAU : 21- 36: ssrle IldlLscgElcACdlL ehfqf ARSR_STAXY : 21- 36: psrle IldlLscgElcACdlL ehfqf CADC_BACFI : 47- 62: enrak ItyaLcqdEesCVcdI aniig CADC_STAAU : 20- 35: ekvnr IqgdLqtvDisGVsqI lkaia CADC_STAAU : 47- 62: enrak ItyaLcqdEelCVcdI anilg CADF_STAAU : 46- 61: dtrvk IayvLsleGelCVcdV aniie SMTB_SYNP7 : 21- 36: gthaa IaseLqaiApeVAqsL aeffa YQCJ_BACSU : 27- 42: qkrle ImyeLcqrGktCVcdL teife F 6: 15.7498 9( 9) L-x(4)-E-x-C-x(2)-[DG] Occurences: 9(9) ARSE_ECOLI : 25- 35: givll LselgElCvcD lctal ARSR_ECOLI : 25- 35: givll LremgElCvcD lcmal ARSR_STAAU : 24- 34: leild LlscgElCacD llehf ARSR_STAXY : 24- 34: leild LlscgElCacD llehf CADC_BACFI : 51- 61: kitya LcqdeEsCvcD ianii CADC_STAAU : 51- 61: kitya LcqdeElCvcD ianil CADF_STAAU : 50- 60: kiayv LslegElCvcD vanii SMTB_SYNP7 : 54- 64: lrlls LlarsElCvgD laqai YQCJ_BACSU : 25- 35: adqkr LeimyElCqrG ktcvc G 7: 14.6923 12( 9) L-x(3,4)-E-x-C-[ACV] Occurences: 12(9) ARSE_ECOLI : 25- 33: givll LselgElCV cdlct ARSR_ECOLI : 25- 33: givll LremgElCV cdlcm ARSR_STAAU : 24- 32: leild LlscgElCA cdlle ARSR_STAAU : 25- 32: eildl Lscg-ElCA cdlle ARSR_STAXY : 24- 32: leild LlscgElCA cdlle ARSR_STAXY : 25- 32: eildl Lscg-ElCA cdlle CADC_BACFI : 51- 59: kitya LcqdeEsCV cdian CADC_STAAU : 51- 59: kitya LcqdeElCV cdian CADF_STAAU : 50- 58: kiayv LslegElCV cdvan SMTB_SYNP7 : 54- 62: lrlls LlarsElCV gdlaq SMTB_SYNP7 : 55- 62: rllsl Lars-ElCV gdlaq YQCJ_BACSU : 87- 94: eevng Llse-ElCC ifrkk H 8: 12.5737 10( 9) L-[ADGNSV]-D-[ENP] Occurences: 10(9) ARSE_ECOLI : 13- 16: qlfki LADE trlgi ARSR_ECOLI : 13- 16: qlfkn LSDE trlgi ARSR_STAAU : 53- 56: hhmks LVDN elvtt ARSR_STAXY : 13- 16: tilkv LSDP srlei ARSR_STAXY : 53- 56: hhmks LVDN elvtt CADC_BACFI : 99- 102: lafys LDDE hirqi CADC_STAAU : 99- 102: lalys LGDE hirqi CADF_STAAU : 98- 101: lvyys LDDE hvkql SMTB_SYNP7 : 43- 46: effav LADP nrlrl YQCJ_BACSU : 79- 82: wsyyd LNDE evngl I 9: 12.5102 9( 9) R-K-x-G Occurences: 9(9) ARSE_ECOLI : 63- 66: gllld RKqG kwvhy ARSR_ECOLI : 63- 66: gilld RKqG kwvhy ARSR_STAAU : 62- 65: elvtt RKdG nkhwy ARSR_STAXY : 62- 65: elvtt RKnG nkhmy CADC_BACFI : 89- 92: givry RKeG klafy CADC_STAAU : 89- 92: gvvnf RKeG klaly CADF_STAAU : 88- 91: giaky RKeG klvyy SMTB_SYNP7 : 92- 95: rlvsy RKqG rhvyy YQCJ_BACSU : 97- 100: lccif RKkG egdcc J 10: 12.5102 10( 9) S-x(2)-L-x(2)-L Occurences: 10(9) ARSE_ECOLI : 48- 54: sqpki SrhLalL resgl ARSR_ECOLI : 48- 54: sqpki SrhLamL resgi ARSR_STAAU : 7- 13: sykel StiLkiL sdssr ARSR_STAAU : 16- 22: kilsd SsrLeiL dllsc ARSR_STAXY : 7- 13: sykel StiLkvL sdpsr CADC_BACFI : 74- 80: taana ShhLrtL hkqgi CADC_STAAU : 74- 80: tiana ShhLrtL ykqgv CADF_STAAU : 73- 79: stata ShhLrlL knlgi SMTB_SYNP7 : 77- 83: sesav ShqLrsL rnlrl YQCJ_BACSU : 54- 60: tqskl SyhLkiL ldanl K 11: 12.0102 9( 9) L-x-D-x(0,1)-E Occurences: 9(9) ARSE_ECOLI : 13- 16: qlfki LaD-E trlgi ARSR_ECOLI : 13- 16: qlfkn LsD-E trlgi ARSR_STAAU : 53- 57: hhmks LvDnE lvttr ARSR_STAXY : 53- 57: hhmks LvDnE lvttr CADC_BACFI : 99- 102: lafys LdD-E hirqi CADC_STAAU : 99- 102: lalys LgD-E hirqi CADF_STAAU : 98- 101: lvyys LdD-E hvkql SMTB_SYNP7 : 6- 10: mtkpv LqDgE tvvcq YQCJ_BACSU : 79- 82: wsyyd LnD-E evngl YQCJ_BACSU : 79- 83: wsyyd LnDeE vngll L 12: 12.0102 13( 9) S-x(1,2)-L-x(2)-L Occurences: 13(9) ARSE_ECOLI : 26- 31: ivlll Se-LgeL cvcdl ARSE_ECOLI : 48- 54: sqpki SrhLalL resgl ARSR_ECOLI : 48- 54: sqpki SrhLamL resgi ARSR_STAAU : 7- 13: sykel StiLkiL sdssr ARSR_STAAU : 16- 22: kilsd SsrLeiL dllsc ARSR_STAAU : 17- 22: ilsds Sr-LeiL dllsc ARSR_STAXY : 7- 13: sykel StiLkvL sdpsr ARSR_STAXY : 17- 22: vlsdp Sr-LeiL dllsc CADC_BACFI : 74- 80: taana ShhLrtL hkqgi CADC_STAAU : 74- 80: tiana ShhLrtL ykqgv CADF_STAAU : 73- 79: stata ShhLrlL knlgi SMTB_SYNP7 : 77- 83: sesav ShqLrsL rnlrl YQCJ_BACSU : 54- 60: tqskl SyhLkiL ldanl M 13: 11.5102 13( 9) S-x(2,3)-L-x(2,3)-L Occurences: 13(9) ARSE_ECOLI : 2- 9: m Sfl-LpiqL fkila ARSE_ECOLI : 48- 54: sqpki Srh-Lal-L resgl ARSR_ECOLI : 48- 54: sqpki Srh-Lam-L resgi ARSR_STAAU : 2- 10: m SykeLstiL kilsd ARSR_STAAU : 7- 13: sykel Sti-Lki-L sdssr ARSR_STAAU : 16- 22: kilsd Ssr-Lei-L dllsc ARSR_STAXY : 2- 10: m SykeLstiL kvlsd ARSR_STAXY : 7- 13: sykel Sti-Lkv-L sdpsr CADC_BACFI : 74- 80: taana Shh-Lrt-L hkqgi CADC_STAAU : 74- 80: tiana Shh-Lrt-L ykqgv CADF_STAAU : 73- 79: stata Shh-Lrl-L knlgi SMTB_SYNP7 : 77- 83: sesav Shq-Lrs-L rnlrl YQCJ_BACSU : 54- 60: tqskl Syh-Lki-L ldanl YQCJ_BACSU : 54- 61: tqskl Syh-LkilL danli N 14: 11.0102 14( 9) L-x(4,5)-L-x(1,3)-E Occurences: 14(9) ARSE_ECOLI : 19- 27: adetr LgivllLs--E lgelc ARSE_ECOLI : 19- 27: adetr Lgivl-Lls-E lgelc ARSE_ECOLI : 23- 30: rlgiv Lllse-Lg--E lcvcd ARSR_ECOLI : 7- 16: lqltp LqlfknLsd-E trlgi ARSR_ECOLI : 19- 27: sdetr LgivllLr--E mgelc ARSR_ECOLI : 19- 27: sdetr Lgivl-Llr-E mgelc ARSR_STAAU : 19- 29: sdssr LeildlLscgE lcacd ARSR_STAAU : 30- 37: lscge Lcacd-Ll--E hfqfs ARSR_STAXY : 19- 29: sdpsr LeildlLscgE lcacd ARSR_STAXY : 30- 37: lscge Lcacd-Ll--E hfqfs CADC_BACFI : 94- 102: rkegk Lafys-Ldd-E hirqi CADC_STAAU : 94- 102: rkegk Lalys-Lgd-E hirqi CADF_STAAU : 93- 101: rkegk Lvyys-Ldd-E hvkql CADF_STAAU : 106- 116: ehvkq LvekafLhqrE vasig SMTB_SYNP7 : 49- 59: adpnr LrllslLarsE lcvgd YQCJ_BACSU : 60- 69: yhlki Lldan-LitkE tkgtw O 15: 11.0102 14( 9) L-x(2,4)-L-x(2,3)-E Occurences: 14(9) ARSE_ECOLI : 9- 16: llpiq Lfki-Lad-E trlgi ARSE_ECOLI : 19- 27: adetr LgivlLls-E lgelc ARSE_ECOLI : 19- 27: adetr Lgiv-LllsE lgelc ARSR_ECOLI : 9- 16: ltplq Lfkn-Lsd-E trlgi ARSR_ECOLI : 19- 27: sdetr LgivlLlr-E mgelc ARSR_ECOLI : 19- 27: sdetr Lgiv-LllrE mgelc ARSR_STAAU : 22- 29: srlei Ldl--LscgE lcacd ARSR_STAXY : 22- 29: srlei Ldl--LscgE lcacd CADC_BACFI : 94- 102: rkegk LafysLdd-E hirqi CADC_STAAU : 94- 102: rkegk LalysLgd-E hirqi CADC_STAAU : 96- 102: egkla Lys--Lgd-E hirqi CADF_STAAU : 93- 101: rkegk LvyysLdd-E hvkql SMTB_SYNP7 : 51- 59: pnrlr Llsl-LarsE lcvgd SMTB_SYNP7 : 52- 59: nrlrl Lsl--LarsE lcvgd YQCJ_BACSU : 60- 69: yhlki LldanLitkE tkgtw YQCJ_BACSU : 61- 69: hlkil Ldan-LitkE tkgtw P 16: 11.0102 16( 9) L-x(2,4)-L-x(0,1)-D Occurences: 16(9) ARSE_ECOLI : 9- 15: llpiq Lfki-LaD etrlg ARSE_ECOLI : 36- 41: lcvcd Lcta-L-D qsqpk ARSR_ECOLI : 9- 15: ltplq Lfkn-LsD etrlg ARSR_ECOLI : 36- 41: lcvcd Lcma-L-D qsqpk ARSR_STAAU : 10- 15: elsti Lki--LsD ssrle ARSR_STAAU : 19- 23: sdssr Lei--L-D llscg ARSR_STAAU : 72- 78: khwyq LnhaiL-D diiqn ARSR_STAAU : 72- 79: khwyq LnhaiLdD iiqnl ARSR_STAXY : 10- 15: elsti Lkv--LsD psrle ARSR_STAXY : 19- 23: sdpsr Lei--L-D llscg ARSR_STAXY : 72- 78: khmyq LnhefL-D yinqn CADC_BACFI : 94- 100: rkegk LafysL-D dehir CADC_BACFI : 94- 101: rkegk LafysLdD ehirq CADC_STAAU : 94- 101: rkegk LalysLgD ehirq CADC_STAAU : 96- 101: egkla Lys--LgD ehirq CADF_STAAU : 93- 99: rkegk LvyysL-D dehvk CADF_STAAU : 93- 100: rkegk LvyysLdD ehvkq SMTB_SYNP7 : 110- 116: hhiva LyqnaL-D hlqec YQCJ_BACSU : 57- 62: klsyh Lkil-L-D anlit YQCJ_BACSU : 57- 62: klsyh Lki--LlD anlit Q 17: 10.5634 9( 9) K-x-G-[DEKR] Occurences: 9(9) ARSE_ECOLI : 64- 67: llldr KqGK wvhyr ARSR_ECOLI : 64- 67: illdr KqGK wvhyr ARSR_STAAU : 100- 103: vcknv KsGD c ARSR_STAXY : 100- 103: acknm KsGE c CADC_BACFI : 90- 93: ivryr KeGK lafys CADC_STAAU : 90- 93: vvnfr KeGK lalys CADF_STAAU : 89- 92: iakyr KeGK lvyys SMTB_SYNP7 : 93- 96: lvsyr KqGR hvyyq YQCJ_BACSU : 98- 101: ccifr KkGE gdcc R 18: 10.5102 10( 9) S-x(0,2)-L-x(2,4)-E Occurences: 10(9) ARSE_ECOLI : 48- 56: sqpki SrhLallrE sglll ARSR_ECOLI : 48- 56: sqpki SrhLamlrE sgill ARSR_STAAU : 52- 57: shhmk S--Lvdn-E lvttr ARSR_STAXY : 52- 57: shhmk S--Lvdn-E lvttr CADC_BACFI : 98- 102: klafy S--Ldd--E hirqi CADC_STAAU : 98- 102: klaly S--Lgd--E hirqi CADF_STAAU : 51- 55: iayvl S--Leg--E lcvcd CADF_STAAU : 97- 101: klvyy S--Ldd--E hvkql SMTB_SYNP7 : 53- 59: rlrll Sl-Lars-E lcvgd SMTB_SYNP7 : 53- 59: rlrll S--LlarsE lcvgd YQCJ_BACSU : 6- 13: mdetk SelLrky-E qkfka YQCJ_BACSU : 6- 13: mdetk Se-LlrkyE qkfka S 19: 10.5102 11( 9) A-x(1,3)-L-x(1,3)-E Occurences: 11(9) ARSE_ECOLI : 52- 56: isrhl Al--Lr--E sglll ARSR_ECOLI : 52- 56: isrhl Am--Lr--E sgill ARSR_STAAU : 32- 37: cgelc Acd-Ll--E hfqfs ARSR_STAXY : 32- 37: cgelc Acd-Ll--E hfqfs CADC_BACFI : 95- 102: kegkl AfysLdd-E hirqi CADC_STAAU : 95- 102: kegkl AlysLgd-E hirqi CADF_STAAU : 47- 53: trvki Ayv-Lsl-E gelcv CADF_STAAU : 110- 116: qlvek Af--LhqrE vasig SMTB_SYNP7 : 33- 38: iapev Aqs-La--E ffavl SMTB_SYNP7 : 114- 120: alyqn AldhLq--E cr YQCJ_BACSU : 63- 69: killd An--LitkE tkgtw T 20: 10.5102 13( 9) L-x(1,3)-D-x(0,2)-E Occurences: 13(9) ARSE_ECOLI : 13- 16: qlfki La--D--E trlgi ARSR_ECOLI : 13- 16: qlfkn Ls--D--E trlgi ARSR_STAAU : 30- 37: lscge LcacDllE hfqfs ARSR_STAAU : 53- 57: hhmks Lv--Dn-E lvttr ARSR_STAXY : 30- 37: lscge LcacDllE hfqfs ARSR_STAXY : 53- 57: hhmks Lv--Dn-E lvttr CADC_BACFI : 51- 55: kitya Lcq-D--E escvc CADC_BACFI : 51- 56: kitya Lcq-De-E scvcd CADC_BACFI : 99- 102: lafys Ld--D--E hirqi CADC_STAAU : 51- 55: kitya Lcq-D--E elcvc CADC_STAAU : 51- 56: kitya Lcq-De-E lcvcd CADC_STAAU : 99- 102: lalys Lg--D--E hirqi CADF_STAAU : 98- 101: lvyys Ld--D--E hvkql SMTB_SYNP7 : 6- 10: mtkpv Lq--Dg-E tvvcq YQCJ_BACSU : 79- 82: wsyyd Ln--D--E evngl YQCJ_BACSU : 79- 83: wsyyd Ln--De-E vngll Number of patterns evaluated by Pratt:340 Total running time: 1 seconds