------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 18 sequences from file HSF_DOMAIN PATTERN CONSERVATION: CM: min Nr of Seqs to Match 18 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename HSF_DOMAIN.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: HSF1_ARATH 483 HSF1_CHICK 491 HSF1_HUMAN 529 HSF1_MOUSE 503 HSF2_CHICK 564 HSF2_HUMAN 536 HSF2_LYCPE 301 HSF2_MOUSE 517 HSF3_CHICK 467 HSF3_LYCPE 351 HSF8_LYCPE 527 HSF_DROME 691 HSF_KLULA 677 HSF_SCHPO 609 HSF_XENLA 451 HSF_YEAST 833 SFL1_YEAST 766 SKN7_YEAST 622 Pratt run started at Thu Feb 6 19:55:57 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 49.5406 24( 18) L-x(4,5)-K-H-x-N-x(2)-S-F-x-R-Q-L-N-x-Y-x(3)-K 2: 40.7005 18( 18) H-x-N-x(1,2)-S-x(0,1)-F-x-R-Q-L-N-x-Y-x(3)-K 3: 40.7005 18( 18) K-x(1,2)-N-x(2)-S-x(0,1)-F-x-R-Q-L-N-x-Y-x(3)-K 4: 37.5305 18( 18) N-x(2)-S-F-x-R-Q-L-N-x-Y-x(3)-K 5: 37.0305 23( 18) N-x(2)-S-x(0,1)-F-x-R-Q-L-N-x-Y-x(3)-K 6: 37.0305 31( 18) N-x(2,3)-S-F-x-R-Q-L-N-x-Y-x(3)-K 7: 36.5305 23( 18) N-x(1,2)-S-x(0,1)-F-x-R-Q-L-N-x-Y-x(3)-K 8: 33.3604 18( 18) S-F-x-R-Q-L-N-x-Y-x(3)-K 9: 32.8604 24( 18) S-x(0,1)-F-x-R-Q-L-N-x-Y-x(3)-K 10: 29.1904 18( 18) F-x-R-Q-L-N-x-Y-x(3)-K 11: 25.0203 18( 18) R-Q-L-N-x-Y-x(3)-K 12: 20.8503 18( 18) Q-L-N-x-Y-x(3)-K 13: 20.3503 19( 18) L-x(4)-K-x(2)-N-x(3,4)-F-x(2)-Q 14: 19.8503 24( 18) L-x(4,5)-K-H-x(0,1)-N-x(2)-S 15: 19.3503 18( 18) L-x(4)-K-H-x(0,1)-N-x(1,3)-F 16: 16.6802 18( 18) L-N-x-Y-x(3)-K 17: 16.1802 20( 18) K-x(2)-N-x(3,4)-F-x(2)-Q 18: 16.1802 18( 18) K-H-x(0,1)-N-x(2)-S 19: 15.6802 31( 18) L-x(2)-Y-x(0,1)-F-x(0,1)-K 20: 15.6802 18( 18) F-x(4)-L-x(3,4)-K-x(1,2)-N Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 73.7562 24( 18) L-x(4,5)-K-H-[NST]-N-[FIM]-[AST]-S-F-[IV]-R-Q-L-N-x-Y-[DG]-[FW]-[HR]-K-[IV] B 2: 71.1927 18( 18) L-[AP]-x(2)-[FY]-K-H-[NST]-N-x(3)-F-[IV]-R-Q-L-N-x-Y-[DG]-[FW]-[HR]-K-[IV] C 3: 70.6370 24( 18) L-x(4,5)-K-H-x(0,1)-N-[FIM]-[AST]-S-F-[IV]-R-Q-L-N-x-Y-[DG]-[FW]-[HR]-K-[IV] D 4: 66.9670 18( 18) K-H-x(0,1)-N-[FIM]-[AST]-S-F-[IV]-R-Q-L-N-x-Y-[DG]-[FW]-[HR]-K-[IV] E 5: 63.8487 18( 18) L-[AP]-x(2)-[FY]-K-H-x(0,1)-N-x(1,3)-F-x-R-Q-L-N-x-Y-[DG]-[FW]-[HR]-K-[IV] F 6: 62.7969 18( 18) K-x(1,2)-N-[FIM]-[AST]-S-F-[IV]-R-Q-L-N-x-Y-[DG]-[FW]-[HR]-K-[IV] G 7: 60.6170 18( 18) K-H-[NST]-N-x(3)-F-[IV]-R-Q-L-N-x-Y-[DG]-[FW]-[HR]-K-[IV] H 8: 59.6170 18( 18) H-[NST]-N-x(1,2)-S-x(0,1)-F-[IV]-R-Q-L-N-x-Y-[DG]-[FW]-[HR]-K-[IV] I 9: 59.1269 18( 18) N-[FIM]-[AST]-S-F-[IV]-R-Q-L-N-x-Y-[DG]-[FW]-[HR]-K-[IV] J 10: 53.3278 31( 18) N-x(2,3)-S-F-[IV]-R-Q-L-N-x-Y-[DG]-[FW]-[HR]-K-[IV] K 11: 52.8278 23( 18) N-x(1,2)-S-x(0,1)-F-[IV]-R-Q-L-N-x-Y-[DG]-[FW]-[HR]-K-[IV] L 12: 49.6578 18( 18) S-F-[IV]-R-Q-L-N-x-Y-[DG]-[FW]-[HR]-K-[IV] M 13: 49.1578 24( 18) S-x(0,1)-F-[IV]-R-Q-L-N-x-Y-[DG]-[FW]-[HR]-K-[IV] N 14: 45.4877 18( 18) F-[IV]-R-Q-L-N-x-Y-[DG]-[FW]-[HR]-K-[IV] O 15: 38.0928 18( 18) R-Q-L-N-x-Y-[DG]-[FW]-[HR]-K-[IV] P 16: 37.0305 23( 18) N-x(2)-S-x(0,1)-F-x-R-Q-L-N-x-Y-x(3)-K Q 17: 33.9227 18( 18) Q-L-N-x-Y-[DG]-[FW]-[HR]-K-[IV] R 18: 30.8348 18( 18) F-x(4)-L-x(3,4)-K-x(1,2)-N-x-[ADS]-x-[FV]-x(4)-[NS]-x(3)-[FW]-x(2)-[ILV] S 19: 29.8751 18( 18) L-[AP]-x(2)-[FY]-K-H-[NST]-N-x(3)-F T 20: 29.7527 18( 18) L-N-x-Y-[DG]-[FW]-[HR]-K-[IV] Best patterns with alignements: fitness hits(seqs) Pattern A 1: 73.7562 24( 18) L-x(4,5)-K-H-[NST]-N-[FIM]-[AST]-S-F-[IV]-R-Q-L-N-x-Y-[DG]-[FW]-[HR]-K-[IV] Occurences: 24(18) HSF1_ARATH : 91- 116: efsrd LlpkyfKHNNFSSFVRQLNtYGFRKV dpdrw HSF1_ARATH : 92- 116: fsrdl Lpkyf-KHNNFSSFVRQLNtYGFRKV dpdrw HSF1_CHICK : 62- 86: fakev Lpkyf-KHNNMASFVRQLNmYGFRKV vhieq HSF1_HUMAN : 57- 81: fakev Lpkyf-KHNNMASFVRQLNmYGFRKV vhieq HSF1_MOUSE : 57- 81: fakev Lpkyf-KHNNMASFVRQLNmYGFRKV vhieq HSF2_CHICK : 63- 87: fakei Lpkyf-KHNNMASFVRQLNmYGFRKV vhvds HSF2_HUMAN : 49- 73: fakei Lpkyf-KHNNMASFVRQLNmYGFRKV vhids HSF2_LYCPE : 48- 73: efakd LlpkyfKHNNFSSFVRQLNtYGFRKI vpdkw HSF2_LYCPE : 49- 73: fakdl Lpkyf-KHNNFSSFVRQLNtYGFRKI vpdkw HSF2_MOUSE : 49- 73: fakei Lpkyf-KHNNMASFVRQLNmYGFRKV vhies HSF3_CHICK : 57- 82: rfake LlpkyfKHNNISSFIRQLNmYGFRKV valen HSF3_CHICK : 58- 82: fakel Lpkyf-KHNNISSFIRQLNmYGFRKV valen HSF3_LYCPE : 70- 95: kfstt LlprffKHSNFSSFIRQLNtYGFRKV dpdrw HSF3_LYCPE : 71- 95: fsttl Lprff-KHSNFSSFIRQLNtYGFRKV dpdrw HSF8_LYCPE : 80- 105: efakd LlpkyfKHNNFSSFVRQLNtYGFRKV dpdrw HSF8_LYCPE : 81- 105: fakdl Lpkyf-KHNNFSSFVRQLNtYGFRKV dpdrw HSF_DROME : 87- 112: qfake LlplnyKHNNMASFIRQLNmYGFHKI tsidn HSF_DROME : 88- 112: fakel Lplny-KHNNMASFIRQLNmYGFHKI tsidn HSF_KLULA : 236- 260: fvqev Lpkyf-KHSNFASFVRQLNmYGWHKV qdvks HSF_SCHPO : 92- 116: faklv Lpryf-KHNNFSSFVRQLNmYGFHKV phiqq HSF_XENLA : 54- 78: fakev Lpkyf-KHNNMASFVRQLNmYGFRKV vhieq HSF_YEAST : 214- 238: fvhqi Lpkyf-KHSNFASFVRQLNmYGWHKV qdvks SFL1_YEAST : 103- 127: rfska Latyf-KHTNITSFVRQLNiYGFHKV shdhs SKN7_YEAST : 126- 150: ftthi Lpnhf-KHSNFASFVRQLNkYDFHKV krspe B 2: 71.1927 18( 18) L-[AP]-x(2)-[FY]-K-H-[NST]-N-x(3)-F-[IV]-R-Q-L-N-x-Y-[DG]-[FW]-[HR]-K-[IV] Occurences: 18(18) HSF1_ARATH : 92- 116: fsrdl LPkyFKHNNfssFVRQLNtYGFRKV dpdrw HSF1_CHICK : 62- 86: fakev LPkyFKHNNmasFVRQLNmYGFRKV vhieq HSF1_HUMAN : 57- 81: fakev LPkyFKHNNmasFVRQLNmYGFRKV vhieq HSF1_MOUSE : 57- 81: fakev LPkyFKHNNmasFVRQLNmYGFRKV vhieq HSF2_CHICK : 63- 87: fakei LPkyFKHNNmasFVRQLNmYGFRKV vhvds HSF2_HUMAN : 49- 73: fakei LPkyFKHNNmasFVRQLNmYGFRKV vhids HSF2_LYCPE : 49- 73: fakdl LPkyFKHNNfssFVRQLNtYGFRKI vpdkw HSF2_MOUSE : 49- 73: fakei LPkyFKHNNmasFVRQLNmYGFRKV vhies HSF3_CHICK : 58- 82: fakel LPkyFKHNNissFIRQLNmYGFRKV valen HSF3_LYCPE : 71- 95: fsttl LPrfFKHSNfssFIRQLNtYGFRKV dpdrw HSF8_LYCPE : 81- 105: fakdl LPkyFKHNNfssFVRQLNtYGFRKV dpdrw HSF_DROME : 88- 112: fakel LPlnYKHNNmasFIRQLNmYGFHKI tsidn HSF_KLULA : 236- 260: fvqev LPkyFKHSNfasFVRQLNmYGWHKV qdvks HSF_SCHPO : 92- 116: faklv LPryFKHNNfssFVRQLNmYGFHKV phiqq HSF_XENLA : 54- 78: fakev LPkyFKHNNmasFVRQLNmYGFRKV vhieq HSF_YEAST : 214- 238: fvhqi LPkyFKHSNfasFVRQLNmYGWHKV qdvks SFL1_YEAST : 103- 127: rfska LAtyFKHTNitsFVRQLNiYGFHKV shdhs SKN7_YEAST : 126- 150: ftthi LPnhFKHSNfasFVRQLNkYDFHKV krspe C 3: 70.6370 24( 18) L-x(4,5)-K-H-x(0,1)-N-[FIM]-[AST]-S-F-[IV]-R-Q-L-N-x-Y-[DG]-[FW]-[HR]-K-[IV] Occurences: 24(18) HSF1_ARATH : 91- 116: efsrd LlpkyfKHnNFSSFVRQLNtYGFRKV dpdrw HSF1_ARATH : 92- 116: fsrdl Lpkyf-KHnNFSSFVRQLNtYGFRKV dpdrw HSF1_CHICK : 62- 86: fakev Lpkyf-KHnNMASFVRQLNmYGFRKV vhieq HSF1_HUMAN : 57- 81: fakev Lpkyf-KHnNMASFVRQLNmYGFRKV vhieq HSF1_MOUSE : 57- 81: fakev Lpkyf-KHnNMASFVRQLNmYGFRKV vhieq HSF2_CHICK : 63- 87: fakei Lpkyf-KHnNMASFVRQLNmYGFRKV vhvds HSF2_HUMAN : 49- 73: fakei Lpkyf-KHnNMASFVRQLNmYGFRKV vhids HSF2_LYCPE : 48- 73: efakd LlpkyfKHnNFSSFVRQLNtYGFRKI vpdkw HSF2_LYCPE : 49- 73: fakdl Lpkyf-KHnNFSSFVRQLNtYGFRKI vpdkw HSF2_MOUSE : 49- 73: fakei Lpkyf-KHnNMASFVRQLNmYGFRKV vhies HSF3_CHICK : 57- 82: rfake LlpkyfKHnNISSFIRQLNmYGFRKV valen HSF3_CHICK : 58- 82: fakel Lpkyf-KHnNISSFIRQLNmYGFRKV valen HSF3_LYCPE : 70- 95: kfstt LlprffKHsNFSSFIRQLNtYGFRKV dpdrw HSF3_LYCPE : 71- 95: fsttl Lprff-KHsNFSSFIRQLNtYGFRKV dpdrw HSF8_LYCPE : 80- 105: efakd LlpkyfKHnNFSSFVRQLNtYGFRKV dpdrw HSF8_LYCPE : 81- 105: fakdl Lpkyf-KHnNFSSFVRQLNtYGFRKV dpdrw HSF_DROME : 87- 112: qfake LlplnyKHnNMASFIRQLNmYGFHKI tsidn HSF_DROME : 88- 112: fakel Lplny-KHnNMASFIRQLNmYGFHKI tsidn HSF_KLULA : 236- 260: fvqev Lpkyf-KHsNFASFVRQLNmYGWHKV qdvks HSF_SCHPO : 92- 116: faklv Lpryf-KHnNFSSFVRQLNmYGFHKV phiqq HSF_XENLA : 54- 78: fakev Lpkyf-KHnNMASFVRQLNmYGFRKV vhieq HSF_YEAST : 214- 238: fvhqi Lpkyf-KHsNFASFVRQLNmYGWHKV qdvks SFL1_YEAST : 103- 127: rfska Latyf-KHtNITSFVRQLNiYGFHKV shdhs SKN7_YEAST : 126- 150: ftthi Lpnhf-KHsNFASFVRQLNkYDFHKV krspe D 4: 66.9670 18( 18) K-H-x(0,1)-N-[FIM]-[AST]-S-F-[IV]-R-Q-L-N-x-Y-[DG]-[FW]-[HR]-K-[IV] Occurences: 18(18) HSF1_ARATH : 97- 116: lpkyf KHnNFSSFVRQLNtYGFRKV dpdrw HSF1_CHICK : 67- 86: lpkyf KHnNMASFVRQLNmYGFRKV vhieq HSF1_HUMAN : 62- 81: lpkyf KHnNMASFVRQLNmYGFRKV vhieq HSF1_MOUSE : 62- 81: lpkyf KHnNMASFVRQLNmYGFRKV vhieq HSF2_CHICK : 68- 87: lpkyf KHnNMASFVRQLNmYGFRKV vhvds HSF2_HUMAN : 54- 73: lpkyf KHnNMASFVRQLNmYGFRKV vhids HSF2_LYCPE : 54- 73: lpkyf KHnNFSSFVRQLNtYGFRKI vpdkw HSF2_MOUSE : 54- 73: lpkyf KHnNMASFVRQLNmYGFRKV vhies HSF3_CHICK : 63- 82: lpkyf KHnNISSFIRQLNmYGFRKV valen HSF3_LYCPE : 76- 95: lprff KHsNFSSFIRQLNtYGFRKV dpdrw HSF8_LYCPE : 86- 105: lpkyf KHnNFSSFVRQLNtYGFRKV dpdrw HSF_DROME : 93- 112: lplny KHnNMASFIRQLNmYGFHKI tsidn HSF_KLULA : 241- 260: lpkyf KHsNFASFVRQLNmYGWHKV qdvks HSF_SCHPO : 97- 116: lpryf KHnNFSSFVRQLNmYGFHKV phiqq HSF_XENLA : 59- 78: lpkyf KHnNMASFVRQLNmYGFRKV vhieq HSF_YEAST : 219- 238: lpkyf KHsNFASFVRQLNmYGWHKV qdvks SFL1_YEAST : 108- 127: latyf KHtNITSFVRQLNiYGFHKV shdhs SKN7_YEAST : 131- 150: lpnhf KHsNFASFVRQLNkYDFHKV krspe E 5: 63.8487 18( 18) L-[AP]-x(2)-[FY]-K-H-x(0,1)-N-x(1,3)-F-x-R-Q-L-N-x-Y-[DG]-[FW]-[HR]-K-[IV] Occurences: 18(18) HSF1_ARATH : 92- 116: fsrdl LPkyFKHnNfssFvRQLNtYGFRKV dpdrw HSF1_CHICK : 62- 86: fakev LPkyFKHnNmasFvRQLNmYGFRKV vhieq HSF1_HUMAN : 57- 81: fakev LPkyFKHnNmasFvRQLNmYGFRKV vhieq HSF1_MOUSE : 57- 81: fakev LPkyFKHnNmasFvRQLNmYGFRKV vhieq HSF2_CHICK : 63- 87: fakei LPkyFKHnNmasFvRQLNmYGFRKV vhvds HSF2_HUMAN : 49- 73: fakei LPkyFKHnNmasFvRQLNmYGFRKV vhids HSF2_LYCPE : 49- 73: fakdl LPkyFKHnNfssFvRQLNtYGFRKI vpdkw HSF2_MOUSE : 49- 73: fakei LPkyFKHnNmasFvRQLNmYGFRKV vhies HSF3_CHICK : 58- 82: fakel LPkyFKHnNissFiRQLNmYGFRKV valen HSF3_LYCPE : 71- 95: fsttl LPrfFKHsNfssFiRQLNtYGFRKV dpdrw HSF8_LYCPE : 81- 105: fakdl LPkyFKHnNfssFvRQLNtYGFRKV dpdrw HSF_DROME : 88- 112: fakel LPlnYKHnNmasFiRQLNmYGFHKI tsidn HSF_KLULA : 236- 260: fvqev LPkyFKHsNfasFvRQLNmYGWHKV qdvks HSF_SCHPO : 92- 116: faklv LPryFKHnNfssFvRQLNmYGFHKV phiqq HSF_XENLA : 54- 78: fakev LPkyFKHnNmasFvRQLNmYGFRKV vhieq HSF_YEAST : 214- 238: fvhqi LPkyFKHsNfasFvRQLNmYGWHKV qdvks SFL1_YEAST : 103- 127: rfska LAtyFKHtNitsFvRQLNiYGFHKV shdhs SKN7_YEAST : 126- 150: ftthi LPnhFKHsNfasFvRQLNkYDFHKV krspe F 6: 62.7969 18( 18) K-x(1,2)-N-[FIM]-[AST]-S-F-[IV]-R-Q-L-N-x-Y-[DG]-[FW]-[HR]-K-[IV] Occurences: 18(18) HSF1_ARATH : 97- 116: lpkyf KhnNFSSFVRQLNtYGFRKV dpdrw HSF1_CHICK : 67- 86: lpkyf KhnNMASFVRQLNmYGFRKV vhieq HSF1_HUMAN : 62- 81: lpkyf KhnNMASFVRQLNmYGFRKV vhieq HSF1_MOUSE : 62- 81: lpkyf KhnNMASFVRQLNmYGFRKV vhieq HSF2_CHICK : 68- 87: lpkyf KhnNMASFVRQLNmYGFRKV vhvds HSF2_HUMAN : 54- 73: lpkyf KhnNMASFVRQLNmYGFRKV vhids HSF2_LYCPE : 54- 73: lpkyf KhnNFSSFVRQLNtYGFRKI vpdkw HSF2_MOUSE : 54- 73: lpkyf KhnNMASFVRQLNmYGFRKV vhies HSF3_CHICK : 63- 82: lpkyf KhnNISSFIRQLNmYGFRKV valen HSF3_LYCPE : 76- 95: lprff KhsNFSSFIRQLNtYGFRKV dpdrw HSF8_LYCPE : 86- 105: lpkyf KhnNFSSFVRQLNtYGFRKV dpdrw HSF_DROME : 93- 112: lplny KhnNMASFIRQLNmYGFHKI tsidn HSF_KLULA : 241- 260: lpkyf KhsNFASFVRQLNmYGWHKV qdvks HSF_SCHPO : 97- 116: lpryf KhnNFSSFVRQLNmYGFHKV phiqq HSF_XENLA : 59- 78: lpkyf KhnNMASFVRQLNmYGFRKV vhieq HSF_YEAST : 219- 238: lpkyf KhsNFASFVRQLNmYGWHKV qdvks SFL1_YEAST : 108- 127: latyf KhtNITSFVRQLNiYGFHKV shdhs SKN7_YEAST : 131- 150: lpnhf KhsNFASFVRQLNkYDFHKV krspe G 7: 60.6170 18( 18) K-H-[NST]-N-x(3)-F-[IV]-R-Q-L-N-x-Y-[DG]-[FW]-[HR]-K-[IV] Occurences: 18(18) HSF1_ARATH : 97- 116: lpkyf KHNNfssFVRQLNtYGFRKV dpdrw HSF1_CHICK : 67- 86: lpkyf KHNNmasFVRQLNmYGFRKV vhieq HSF1_HUMAN : 62- 81: lpkyf KHNNmasFVRQLNmYGFRKV vhieq HSF1_MOUSE : 62- 81: lpkyf KHNNmasFVRQLNmYGFRKV vhieq HSF2_CHICK : 68- 87: lpkyf KHNNmasFVRQLNmYGFRKV vhvds HSF2_HUMAN : 54- 73: lpkyf KHNNmasFVRQLNmYGFRKV vhids HSF2_LYCPE : 54- 73: lpkyf KHNNfssFVRQLNtYGFRKI vpdkw HSF2_MOUSE : 54- 73: lpkyf KHNNmasFVRQLNmYGFRKV vhies HSF3_CHICK : 63- 82: lpkyf KHNNissFIRQLNmYGFRKV valen HSF3_LYCPE : 76- 95: lprff KHSNfssFIRQLNtYGFRKV dpdrw HSF8_LYCPE : 86- 105: lpkyf KHNNfssFVRQLNtYGFRKV dpdrw HSF_DROME : 93- 112: lplny KHNNmasFIRQLNmYGFHKI tsidn HSF_KLULA : 241- 260: lpkyf KHSNfasFVRQLNmYGWHKV qdvks HSF_SCHPO : 97- 116: lpryf KHNNfssFVRQLNmYGFHKV phiqq HSF_XENLA : 59- 78: lpkyf KHNNmasFVRQLNmYGFRKV vhieq HSF_YEAST : 219- 238: lpkyf KHSNfasFVRQLNmYGWHKV qdvks SFL1_YEAST : 108- 127: latyf KHTNitsFVRQLNiYGFHKV shdhs SKN7_YEAST : 131- 150: lpnhf KHSNfasFVRQLNkYDFHKV krspe H 8: 59.6170 18( 18) H-[NST]-N-x(1,2)-S-x(0,1)-F-[IV]-R-Q-L-N-x-Y-[DG]-[FW]-[HR]-K-[IV] Occurences: 18(18) HSF1_ARATH : 98- 116: pkyfk HNNfsS-FVRQLNtYGFRKV dpdrw HSF1_ARATH : 98- 116: pkyfk HNNf-SsFVRQLNtYGFRKV dpdrw HSF1_CHICK : 68- 86: pkyfk HNNmaS-FVRQLNmYGFRKV vhieq HSF1_HUMAN : 63- 81: pkyfk HNNmaS-FVRQLNmYGFRKV vhieq HSF1_MOUSE : 63- 81: pkyfk HNNmaS-FVRQLNmYGFRKV vhieq HSF2_CHICK : 69- 87: pkyfk HNNmaS-FVRQLNmYGFRKV vhvds HSF2_HUMAN : 55- 73: pkyfk HNNmaS-FVRQLNmYGFRKV vhids HSF2_LYCPE : 55- 73: pkyfk HNNfsS-FVRQLNtYGFRKI vpdkw HSF2_LYCPE : 55- 73: pkyfk HNNf-SsFVRQLNtYGFRKI vpdkw HSF2_MOUSE : 55- 73: pkyfk HNNmaS-FVRQLNmYGFRKV vhies HSF3_CHICK : 64- 82: pkyfk HNNisS-FIRQLNmYGFRKV valen HSF3_CHICK : 64- 82: pkyfk HNNi-SsFIRQLNmYGFRKV valen HSF3_LYCPE : 77- 95: prffk HSNfsS-FIRQLNtYGFRKV dpdrw HSF3_LYCPE : 77- 95: prffk HSNf-SsFIRQLNtYGFRKV dpdrw HSF8_LYCPE : 87- 105: pkyfk HNNfsS-FVRQLNtYGFRKV dpdrw HSF8_LYCPE : 87- 105: pkyfk HNNf-SsFVRQLNtYGFRKV dpdrw HSF_DROME : 94- 112: plnyk HNNmaS-FIRQLNmYGFHKI tsidn HSF_KLULA : 242- 260: pkyfk HSNfaS-FVRQLNmYGWHKV qdvks HSF_SCHPO : 98- 116: pryfk HNNfsS-FVRQLNmYGFHKV phiqq HSF_SCHPO : 98- 116: pryfk HNNf-SsFVRQLNmYGFHKV phiqq HSF_XENLA : 60- 78: pkyfk HNNmaS-FVRQLNmYGFRKV vhieq HSF_YEAST : 220- 238: pkyfk HSNfaS-FVRQLNmYGWHKV qdvks SFL1_YEAST : 109- 127: atyfk HTNitS-FVRQLNiYGFHKV shdhs SKN7_YEAST : 132- 150: pnhfk HSNfaS-FVRQLNkYDFHKV krspe I 9: 59.1269 18( 18) N-[FIM]-[AST]-S-F-[IV]-R-Q-L-N-x-Y-[DG]-[FW]-[HR]-K-[IV] Occurences: 18(18) HSF1_ARATH : 100- 116: yfkhn NFSSFVRQLNtYGFRKV dpdrw HSF1_CHICK : 70- 86: yfkhn NMASFVRQLNmYGFRKV vhieq HSF1_HUMAN : 65- 81: yfkhn NMASFVRQLNmYGFRKV vhieq HSF1_MOUSE : 65- 81: yfkhn NMASFVRQLNmYGFRKV vhieq HSF2_CHICK : 71- 87: yfkhn NMASFVRQLNmYGFRKV vhvds HSF2_HUMAN : 57- 73: yfkhn NMASFVRQLNmYGFRKV vhids HSF2_LYCPE : 57- 73: yfkhn NFSSFVRQLNtYGFRKI vpdkw HSF2_MOUSE : 57- 73: yfkhn NMASFVRQLNmYGFRKV vhies HSF3_CHICK : 66- 82: yfkhn NISSFIRQLNmYGFRKV valen HSF3_LYCPE : 79- 95: ffkhs NFSSFIRQLNtYGFRKV dpdrw HSF8_LYCPE : 89- 105: yfkhn NFSSFVRQLNtYGFRKV dpdrw HSF_DROME : 96- 112: nykhn NMASFIRQLNmYGFHKI tsidn HSF_KLULA : 244- 260: yfkhs NFASFVRQLNmYGWHKV qdvks HSF_SCHPO : 100- 116: yfkhn NFSSFVRQLNmYGFHKV phiqq HSF_XENLA : 62- 78: yfkhn NMASFVRQLNmYGFRKV vhieq HSF_YEAST : 222- 238: yfkhs NFASFVRQLNmYGWHKV qdvks SFL1_YEAST : 111- 127: yfkht NITSFVRQLNiYGFHKV shdhs SKN7_YEAST : 134- 150: hfkhs NFASFVRQLNkYDFHKV krspe J 10: 53.3278 31( 18) N-x(2,3)-S-F-[IV]-R-Q-L-N-x-Y-[DG]-[FW]-[HR]-K-[IV] Occurences: 31(18) HSF1_ARATH : 99- 116: kyfkh NnfsSFVRQLNtYGFRKV dpdrw HSF1_ARATH : 100- 116: yfkhn Nfs-SFVRQLNtYGFRKV dpdrw HSF1_CHICK : 69- 86: kyfkh NnmaSFVRQLNmYGFRKV vhieq HSF1_CHICK : 70- 86: yfkhn Nma-SFVRQLNmYGFRKV vhieq HSF1_HUMAN : 64- 81: kyfkh NnmaSFVRQLNmYGFRKV vhieq HSF1_HUMAN : 65- 81: yfkhn Nma-SFVRQLNmYGFRKV vhieq HSF1_MOUSE : 64- 81: kyfkh NnmaSFVRQLNmYGFRKV vhieq HSF1_MOUSE : 65- 81: yfkhn Nma-SFVRQLNmYGFRKV vhieq HSF2_CHICK : 70- 87: kyfkh NnmaSFVRQLNmYGFRKV vhvds HSF2_CHICK : 71- 87: yfkhn Nma-SFVRQLNmYGFRKV vhvds HSF2_HUMAN : 56- 73: kyfkh NnmaSFVRQLNmYGFRKV vhids HSF2_HUMAN : 57- 73: yfkhn Nma-SFVRQLNmYGFRKV vhids HSF2_LYCPE : 56- 73: kyfkh NnfsSFVRQLNtYGFRKI vpdkw HSF2_LYCPE : 57- 73: yfkhn Nfs-SFVRQLNtYGFRKI vpdkw HSF2_MOUSE : 56- 73: kyfkh NnmaSFVRQLNmYGFRKV vhies HSF2_MOUSE : 57- 73: yfkhn Nma-SFVRQLNmYGFRKV vhies HSF3_CHICK : 65- 82: kyfkh NnisSFIRQLNmYGFRKV valen HSF3_CHICK : 66- 82: yfkhn Nis-SFIRQLNmYGFRKV valen HSF3_LYCPE : 79- 95: ffkhs Nfs-SFIRQLNtYGFRKV dpdrw HSF8_LYCPE : 88- 105: kyfkh NnfsSFVRQLNtYGFRKV dpdrw HSF8_LYCPE : 89- 105: yfkhn Nfs-SFVRQLNtYGFRKV dpdrw HSF_DROME : 95- 112: lnykh NnmaSFIRQLNmYGFHKI tsidn HSF_DROME : 96- 112: nykhn Nma-SFIRQLNmYGFHKI tsidn HSF_KLULA : 244- 260: yfkhs Nfa-SFVRQLNmYGWHKV qdvks HSF_SCHPO : 99- 116: ryfkh NnfsSFVRQLNmYGFHKV phiqq HSF_SCHPO : 100- 116: yfkhn Nfs-SFVRQLNmYGFHKV phiqq HSF_XENLA : 61- 78: kyfkh NnmaSFVRQLNmYGFRKV vhieq HSF_XENLA : 62- 78: yfkhn Nma-SFVRQLNmYGFRKV vhieq HSF_YEAST : 222- 238: yfkhs Nfa-SFVRQLNmYGWHKV qdvks SFL1_YEAST : 111- 127: yfkht Nit-SFVRQLNiYGFHKV shdhs SKN7_YEAST : 134- 150: hfkhs Nfa-SFVRQLNkYDFHKV krspe K 11: 52.8278 23( 18) N-x(1,2)-S-x(0,1)-F-[IV]-R-Q-L-N-x-Y-[DG]-[FW]-[HR]-K-[IV] Occurences: 23(18) HSF1_ARATH : 99- 116: kyfkh NnfSsFVRQLNtYGFRKV dpdrw HSF1_ARATH : 100- 116: yfkhn NfsS-FVRQLNtYGFRKV dpdrw HSF1_ARATH : 100- 116: yfkhn Nf-SsFVRQLNtYGFRKV dpdrw HSF1_CHICK : 70- 86: yfkhn NmaS-FVRQLNmYGFRKV vhieq HSF1_HUMAN : 65- 81: yfkhn NmaS-FVRQLNmYGFRKV vhieq HSF1_MOUSE : 65- 81: yfkhn NmaS-FVRQLNmYGFRKV vhieq HSF2_CHICK : 71- 87: yfkhn NmaS-FVRQLNmYGFRKV vhvds HSF2_HUMAN : 57- 73: yfkhn NmaS-FVRQLNmYGFRKV vhids HSF2_LYCPE : 56- 73: kyfkh NnfSsFVRQLNtYGFRKI vpdkw HSF2_LYCPE : 57- 73: yfkhn NfsS-FVRQLNtYGFRKI vpdkw HSF2_LYCPE : 57- 73: yfkhn Nf-SsFVRQLNtYGFRKI vpdkw HSF2_MOUSE : 57- 73: yfkhn NmaS-FVRQLNmYGFRKV vhies HSF3_CHICK : 65- 82: kyfkh NniSsFIRQLNmYGFRKV valen HSF3_CHICK : 66- 82: yfkhn NisS-FIRQLNmYGFRKV valen HSF3_CHICK : 66- 82: yfkhn Ni-SsFIRQLNmYGFRKV valen HSF3_LYCPE : 79- 95: ffkhs NfsS-FIRQLNtYGFRKV dpdrw HSF3_LYCPE : 79- 95: ffkhs Nf-SsFIRQLNtYGFRKV dpdrw HSF8_LYCPE : 88- 105: kyfkh NnfSsFVRQLNtYGFRKV dpdrw HSF8_LYCPE : 89- 105: yfkhn NfsS-FVRQLNtYGFRKV dpdrw HSF8_LYCPE : 89- 105: yfkhn Nf-SsFVRQLNtYGFRKV dpdrw HSF_DROME : 96- 112: nykhn NmaS-FIRQLNmYGFHKI tsidn HSF_KLULA : 244- 260: yfkhs NfaS-FVRQLNmYGWHKV qdvks HSF_SCHPO : 99- 116: ryfkh NnfSsFVRQLNmYGFHKV phiqq HSF_SCHPO : 100- 116: yfkhn NfsS-FVRQLNmYGFHKV phiqq HSF_SCHPO : 100- 116: yfkhn Nf-SsFVRQLNmYGFHKV phiqq HSF_XENLA : 62- 78: yfkhn NmaS-FVRQLNmYGFRKV vhieq HSF_YEAST : 222- 238: yfkhs NfaS-FVRQLNmYGWHKV qdvks SFL1_YEAST : 111- 127: yfkht NitS-FVRQLNiYGFHKV shdhs SKN7_YEAST : 134- 150: hfkhs NfaS-FVRQLNkYDFHKV krspe L 12: 49.6578 18( 18) S-F-[IV]-R-Q-L-N-x-Y-[DG]-[FW]-[HR]-K-[IV] Occurences: 18(18) HSF1_ARATH : 103- 116: hnnfs SFVRQLNtYGFRKV dpdrw HSF1_CHICK : 73- 86: hnnma SFVRQLNmYGFRKV vhieq HSF1_HUMAN : 68- 81: hnnma SFVRQLNmYGFRKV vhieq HSF1_MOUSE : 68- 81: hnnma SFVRQLNmYGFRKV vhieq HSF2_CHICK : 74- 87: hnnma SFVRQLNmYGFRKV vhvds HSF2_HUMAN : 60- 73: hnnma SFVRQLNmYGFRKV vhids HSF2_LYCPE : 60- 73: hnnfs SFVRQLNtYGFRKI vpdkw HSF2_MOUSE : 60- 73: hnnma SFVRQLNmYGFRKV vhies HSF3_CHICK : 69- 82: hnnis SFIRQLNmYGFRKV valen HSF3_LYCPE : 82- 95: hsnfs SFIRQLNtYGFRKV dpdrw HSF8_LYCPE : 92- 105: hnnfs SFVRQLNtYGFRKV dpdrw HSF_DROME : 99- 112: hnnma SFIRQLNmYGFHKI tsidn HSF_KLULA : 247- 260: hsnfa SFVRQLNmYGWHKV qdvks HSF_SCHPO : 103- 116: hnnfs SFVRQLNmYGFHKV phiqq HSF_XENLA : 65- 78: hnnma SFVRQLNmYGFRKV vhieq HSF_YEAST : 225- 238: hsnfa SFVRQLNmYGWHKV qdvks SFL1_YEAST : 114- 127: htnit SFVRQLNiYGFHKV shdhs SKN7_YEAST : 137- 150: hsnfa SFVRQLNkYDFHKV krspe M 13: 49.1578 24( 18) S-x(0,1)-F-[IV]-R-Q-L-N-x-Y-[DG]-[FW]-[HR]-K-[IV] Occurences: 24(18) HSF1_ARATH : 102- 116: khnnf SsFVRQLNtYGFRKV dpdrw HSF1_ARATH : 103- 116: hnnfs S-FVRQLNtYGFRKV dpdrw HSF1_CHICK : 73- 86: hnnma S-FVRQLNmYGFRKV vhieq HSF1_HUMAN : 68- 81: hnnma S-FVRQLNmYGFRKV vhieq HSF1_MOUSE : 68- 81: hnnma S-FVRQLNmYGFRKV vhieq HSF2_CHICK : 74- 87: hnnma S-FVRQLNmYGFRKV vhvds HSF2_HUMAN : 60- 73: hnnma S-FVRQLNmYGFRKV vhids HSF2_LYCPE : 59- 73: khnnf SsFVRQLNtYGFRKI vpdkw HSF2_LYCPE : 60- 73: hnnfs S-FVRQLNtYGFRKI vpdkw HSF2_MOUSE : 60- 73: hnnma S-FVRQLNmYGFRKV vhies HSF3_CHICK : 68- 82: khnni SsFIRQLNmYGFRKV valen HSF3_CHICK : 69- 82: hnnis S-FIRQLNmYGFRKV valen HSF3_LYCPE : 81- 95: khsnf SsFIRQLNtYGFRKV dpdrw HSF3_LYCPE : 82- 95: hsnfs S-FIRQLNtYGFRKV dpdrw HSF8_LYCPE : 91- 105: khnnf SsFVRQLNtYGFRKV dpdrw HSF8_LYCPE : 92- 105: hnnfs S-FVRQLNtYGFRKV dpdrw HSF_DROME : 99- 112: hnnma S-FIRQLNmYGFHKI tsidn HSF_KLULA : 247- 260: hsnfa S-FVRQLNmYGWHKV qdvks HSF_SCHPO : 102- 116: khnnf SsFVRQLNmYGFHKV phiqq HSF_SCHPO : 103- 116: hnnfs S-FVRQLNmYGFHKV phiqq HSF_XENLA : 65- 78: hnnma S-FVRQLNmYGFRKV vhieq HSF_YEAST : 225- 238: hsnfa S-FVRQLNmYGWHKV qdvks SFL1_YEAST : 114- 127: htnit S-FVRQLNiYGFHKV shdhs SKN7_YEAST : 137- 150: hsnfa S-FVRQLNkYDFHKV krspe N 14: 45.4877 18( 18) F-[IV]-R-Q-L-N-x-Y-[DG]-[FW]-[HR]-K-[IV] Occurences: 18(18) HSF1_ARATH : 104- 116: nnfss FVRQLNtYGFRKV dpdrw HSF1_CHICK : 74- 86: nnmas FVRQLNmYGFRKV vhieq HSF1_HUMAN : 69- 81: nnmas FVRQLNmYGFRKV vhieq HSF1_MOUSE : 69- 81: nnmas FVRQLNmYGFRKV vhieq HSF2_CHICK : 75- 87: nnmas FVRQLNmYGFRKV vhvds HSF2_HUMAN : 61- 73: nnmas FVRQLNmYGFRKV vhids HSF2_LYCPE : 61- 73: nnfss FVRQLNtYGFRKI vpdkw HSF2_MOUSE : 61- 73: nnmas FVRQLNmYGFRKV vhies HSF3_CHICK : 70- 82: nniss FIRQLNmYGFRKV valen HSF3_LYCPE : 83- 95: snfss FIRQLNtYGFRKV dpdrw HSF8_LYCPE : 93- 105: nnfss FVRQLNtYGFRKV dpdrw HSF_DROME : 100- 112: nnmas FIRQLNmYGFHKI tsidn HSF_KLULA : 248- 260: snfas FVRQLNmYGWHKV qdvks HSF_SCHPO : 104- 116: nnfss FVRQLNmYGFHKV phiqq HSF_XENLA : 66- 78: nnmas FVRQLNmYGFRKV vhieq HSF_YEAST : 226- 238: snfas FVRQLNmYGWHKV qdvks SFL1_YEAST : 115- 127: tnits FVRQLNiYGFHKV shdhs SKN7_YEAST : 138- 150: snfas FVRQLNkYDFHKV krspe O 15: 38.0928 18( 18) R-Q-L-N-x-Y-[DG]-[FW]-[HR]-K-[IV] Occurences: 18(18) HSF1_ARATH : 106- 116: fssfv RQLNtYGFRKV dpdrw HSF1_CHICK : 76- 86: masfv RQLNmYGFRKV vhieq HSF1_HUMAN : 71- 81: masfv RQLNmYGFRKV vhieq HSF1_MOUSE : 71- 81: masfv RQLNmYGFRKV vhieq HSF2_CHICK : 77- 87: masfv RQLNmYGFRKV vhvds HSF2_HUMAN : 63- 73: masfv RQLNmYGFRKV vhids HSF2_LYCPE : 63- 73: fssfv RQLNtYGFRKI vpdkw HSF2_MOUSE : 63- 73: masfv RQLNmYGFRKV vhies HSF3_CHICK : 72- 82: issfi RQLNmYGFRKV valen HSF3_LYCPE : 85- 95: fssfi RQLNtYGFRKV dpdrw HSF8_LYCPE : 95- 105: fssfv RQLNtYGFRKV dpdrw HSF_DROME : 102- 112: masfi RQLNmYGFHKI tsidn HSF_KLULA : 250- 260: fasfv RQLNmYGWHKV qdvks HSF_SCHPO : 106- 116: fssfv RQLNmYGFHKV phiqq HSF_XENLA : 68- 78: masfv RQLNmYGFRKV vhieq HSF_YEAST : 228- 238: fasfv RQLNmYGWHKV qdvks SFL1_YEAST : 117- 127: itsfv RQLNiYGFHKV shdhs SKN7_YEAST : 140- 150: fasfv RQLNkYDFHKV krspe P 16: 37.0305 23( 18) N-x(2)-S-x(0,1)-F-x-R-Q-L-N-x-Y-x(3)-K Occurences: 23(18) HSF1_ARATH : 99- 115: kyfkh NnfSsFvRQLNtYgfrK vdpdr HSF1_ARATH : 100- 115: yfkhn NfsS-FvRQLNtYgfrK vdpdr HSF1_CHICK : 70- 85: yfkhn NmaS-FvRQLNmYgfrK vvhie HSF1_HUMAN : 65- 80: yfkhn NmaS-FvRQLNmYgfrK vvhie HSF1_MOUSE : 65- 80: yfkhn NmaS-FvRQLNmYgfrK vvhie HSF2_CHICK : 71- 86: yfkhn NmaS-FvRQLNmYgfrK vvhvd HSF2_HUMAN : 57- 72: yfkhn NmaS-FvRQLNmYgfrK vvhid HSF2_LYCPE : 56- 72: kyfkh NnfSsFvRQLNtYgfrK ivpdk HSF2_LYCPE : 57- 72: yfkhn NfsS-FvRQLNtYgfrK ivpdk HSF2_MOUSE : 57- 72: yfkhn NmaS-FvRQLNmYgfrK vvhie HSF3_CHICK : 65- 81: kyfkh NniSsFiRQLNmYgfrK vvale HSF3_CHICK : 66- 81: yfkhn NisS-FiRQLNmYgfrK vvale HSF3_LYCPE : 79- 94: ffkhs NfsS-FiRQLNtYgfrK vdpdr HSF8_LYCPE : 88- 104: kyfkh NnfSsFvRQLNtYgfrK vdpdr HSF8_LYCPE : 89- 104: yfkhn NfsS-FvRQLNtYgfrK vdpdr HSF_DROME : 96- 111: nykhn NmaS-FiRQLNmYgfhK itsid HSF_KLULA : 244- 259: yfkhs NfaS-FvRQLNmYgwhK vqdvk HSF_SCHPO : 99- 115: ryfkh NnfSsFvRQLNmYgfhK vphiq HSF_SCHPO : 100- 115: yfkhn NfsS-FvRQLNmYgfhK vphiq HSF_XENLA : 62- 77: yfkhn NmaS-FvRQLNmYgfrK vvhie HSF_YEAST : 222- 237: yfkhs NfaS-FvRQLNmYgwhK vqdvk SFL1_YEAST : 111- 126: yfkht NitS-FvRQLNiYgfhK vshdh SKN7_YEAST : 134- 149: hfkhs NfaS-FvRQLNkYdfhK vkrsp Q 17: 33.9227 18( 18) Q-L-N-x-Y-[DG]-[FW]-[HR]-K-[IV] Occurences: 18(18) HSF1_ARATH : 107- 116: ssfvr QLNtYGFRKV dpdrw HSF1_CHICK : 77- 86: asfvr QLNmYGFRKV vhieq HSF1_HUMAN : 72- 81: asfvr QLNmYGFRKV vhieq HSF1_MOUSE : 72- 81: asfvr QLNmYGFRKV vhieq HSF2_CHICK : 78- 87: asfvr QLNmYGFRKV vhvds HSF2_HUMAN : 64- 73: asfvr QLNmYGFRKV vhids HSF2_LYCPE : 64- 73: ssfvr QLNtYGFRKI vpdkw HSF2_MOUSE : 64- 73: asfvr QLNmYGFRKV vhies HSF3_CHICK : 73- 82: ssfir QLNmYGFRKV valen HSF3_LYCPE : 86- 95: ssfir QLNtYGFRKV dpdrw HSF8_LYCPE : 96- 105: ssfvr QLNtYGFRKV dpdrw HSF_DROME : 103- 112: asfir QLNmYGFHKI tsidn HSF_KLULA : 251- 260: asfvr QLNmYGWHKV qdvks HSF_SCHPO : 107- 116: ssfvr QLNmYGFHKV phiqq HSF_XENLA : 69- 78: asfvr QLNmYGFRKV vhieq HSF_YEAST : 229- 238: asfvr QLNmYGWHKV qdvks SFL1_YEAST : 118- 127: tsfvr QLNiYGFHKV shdhs SKN7_YEAST : 141- 150: asfvr QLNkYDFHKV krspe R 18: 30.8348 18( 18) F-x(4)-L-x(3,4)-K-x(1,2)-N-x-[ADS]-x-[FV]-x(4)-[NS]-x(3)-[FW]-x(2)-[ILV] Occurences: 18(18) HSF1_ARATH : 87- 116: wdppe FsrdlLpkyfKhnNfSsFvrqlNtygFrkV dpdrw HSF1_CHICK : 57- 86: fdqgq FakevLpkyfKhnNmAsFvrqlNmygFrkV vhieq HSF1_HUMAN : 52- 81: fdqgq FakevLpkyfKhnNmAsFvrqlNmygFrkV vhieq HSF1_MOUSE : 52- 81: fdqgq FakevLpkyfKhnNmAsFvrqlNmygFrkV vhieq HSF2_CHICK : 58- 87: ldeqr FakeiLpkyfKhnNmAsFvrqlNmygFrkV vhvds HSF2_HUMAN : 44- 73: ldeqr FakeiLpkyfKhnNmAsFvrqlNmygFrkV vhids HSF2_LYCPE : 44- 73: wktae FakdlLpkyfKhnNfSsFvrqlNtygFrkI vpdkw HSF2_MOUSE : 44- 73: ldeqr FakeiLpkyfKhnNmAsFvrqlNmygFrkV vhies HSF3_CHICK : 53- 82: ldeqr FakelLpkyfKhnNiSsFirqlNmygFrkV valen HSF3_LYCPE : 66- 95: wdshk FsttlLprffKhsNfSsFirqlNtygFrkV dpdrw HSF8_LYCPE : 76- 105: wdppe FakdlLpkyfKhnNfSsFvrqlNtygFrkV dpdrw HSF_DROME : 83- 112: qnqaq FakelLplnyKhnNmAsFirqlNmygFhkI tsidn HSF_KLULA : 231- 260: pnrer FvqevLpkyfKhsNfAsFvrqlNmygWhkV qdvks HSF_SCHPO : 87- 116: ighed FaklvLpryfKhnNfSsFvrqlNmygFhkV phiqq HSF_XENLA : 49- 78: fdqgq FakevLpkyfKhnNmAsFvrqlNmygFrkV vhieq HSF_YEAST : 209- 238: tnree FvhqiLpkyfKhsNfAsFvrqlNmygWhkV qdvks SFL1_YEAST : 297- 325: nrppn FqdetLkhl-KeiNfDmVkiieSmqhFisL qhsfc SKN7_YEAST : 121- 150: ldtgk FtthiLpnhfKhsNfAsFvrqlNkydFhkV krspe S 19: 29.8751 18( 18) L-[AP]-x(2)-[FY]-K-H-[NST]-N-x(3)-F Occurences: 18(18) HSF1_ARATH : 92- 104: fsrdl LPkyFKHNNfssF vrqln HSF1_CHICK : 62- 74: fakev LPkyFKHNNmasF vrqln HSF1_HUMAN : 57- 69: fakev LPkyFKHNNmasF vrqln HSF1_MOUSE : 57- 69: fakev LPkyFKHNNmasF vrqln HSF2_CHICK : 63- 75: fakei LPkyFKHNNmasF vrqln HSF2_HUMAN : 49- 61: fakei LPkyFKHNNmasF vrqln HSF2_LYCPE : 49- 61: fakdl LPkyFKHNNfssF vrqln HSF2_MOUSE : 49- 61: fakei LPkyFKHNNmasF vrqln HSF3_CHICK : 58- 70: fakel LPkyFKHNNissF irqln HSF3_LYCPE : 71- 83: fsttl LPrfFKHSNfssF irqln HSF8_LYCPE : 81- 93: fakdl LPkyFKHNNfssF vrqln HSF_DROME : 88- 100: fakel LPlnYKHNNmasF irqln HSF_KLULA : 236- 248: fvqev LPkyFKHSNfasF vrqln HSF_SCHPO : 92- 104: faklv LPryFKHNNfssF vrqln HSF_XENLA : 54- 66: fakev LPkyFKHNNmasF vrqln HSF_YEAST : 214- 226: fvhqi LPkyFKHSNfasF vrqln SFL1_YEAST : 103- 115: rfska LAtyFKHTNitsF vrqln SKN7_YEAST : 126- 138: ftthi LPnhFKHSNfasF vrqln T 20: 29.7527 18( 18) L-N-x-Y-[DG]-[FW]-[HR]-K-[IV] Occurences: 18(18) HSF1_ARATH : 108- 116: sfvrq LNtYGFRKV dpdrw HSF1_CHICK : 78- 86: sfvrq LNmYGFRKV vhieq HSF1_HUMAN : 73- 81: sfvrq LNmYGFRKV vhieq HSF1_MOUSE : 73- 81: sfvrq LNmYGFRKV vhieq HSF2_CHICK : 79- 87: sfvrq LNmYGFRKV vhvds HSF2_HUMAN : 65- 73: sfvrq LNmYGFRKV vhids HSF2_LYCPE : 65- 73: sfvrq LNtYGFRKI vpdkw HSF2_MOUSE : 65- 73: sfvrq LNmYGFRKV vhies HSF3_CHICK : 74- 82: sfirq LNmYGFRKV valen HSF3_LYCPE : 87- 95: sfirq LNtYGFRKV dpdrw HSF8_LYCPE : 97- 105: sfvrq LNtYGFRKV dpdrw HSF_DROME : 104- 112: sfirq LNmYGFHKI tsidn HSF_KLULA : 252- 260: sfvrq LNmYGWHKV qdvks HSF_SCHPO : 108- 116: sfvrq LNmYGFHKV phiqq HSF_XENLA : 70- 78: sfvrq LNmYGFRKV vhieq HSF_YEAST : 230- 238: sfvrq LNmYGWHKV qdvks SFL1_YEAST : 119- 127: sfvrq LNiYGFHKV shdhs SKN7_YEAST : 142- 150: sfvrq LNkYDFHKV krspe Number of patterns evaluated by Pratt:7207 Total running time: 12 seconds