------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 5 sequences from file HPPK PATTERN CONSERVATION: CM: min Nr of Seqs to Match 5 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename HPPK.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: FAS_PNECA 740 HPPK_BACSU 167 HPPK_ECOLI 158 HPPK_HAEIN 160 HPPK_STRPN 270 Pratt run started at Thu Feb 6 19:55:55 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 40.7005 5( 5) N-x(1,2)-V-x(3,4)-T-x-L-x(4)-L-L-x(5)-I-E-x(3)-G-R 2: 40.2005 6( 5) A-x(0,2)-V-x(3,4)-T-x-L-x(4)-L-L-x(5)-I-E-x(3)-G-R 3: 36.5305 5( 5) T-x-L-x(0,1)-P-x(2,3)-L-L-x(5)-I-E-x(3)-G-R 4: 32.8604 7( 5) I-x(4,5)-L-x(2)-P-H-x(5)-R-x-F-x(4)-L-x(2)-I 5: 32.3604 5( 5) L-x(0,1)-P-x(2,3)-L-L-x(5)-I-E-x(3)-G-R 6: 29.1904 5( 5) L-x(2)-P-H-x(5)-R-x-F-x(4)-L-x(2)-I 7: 28.6904 5( 5) P-x(2,3)-L-L-x(5)-I-E-x(3)-G-R 8: 25.0203 5( 5) P-H-x(5)-R-x-F-x(4)-L-x(2)-I 9: 25.0203 5( 5) L-L-x(5)-I-E-x(3)-G-R 10: 23.5203 6( 5) T-x(0,1)-L-x(5)-L-x(5)-I-x(2)-E-x(0,2)-R 11: 20.8503 5( 5) H-x(5)-R-x-F-x(4)-L-x(2)-I 12: 20.8503 5( 5) L-x(5)-I-E-x(3)-G-R 13: 20.3503 5( 5) A-x(1,2)-I-x(2)-G-S-N 14: 19.8503 6( 5) V-x(3,4)-T-x-L-x(0,1)-P-x(3)-L 15: 19.8503 5( 5) A-x(0,2)-I-x(2)-G-S-N 16: 18.8503 6( 5) A-x(0,2)-I-x(0,2)-G-S-N 17: 16.6802 5( 5) R-x-F-x(3)-P-L 18: 16.6802 5( 5) R-x(2)-D-L-D 19: 16.6802 5( 5) G-x(4)-D-L-D 20: 16.6802 5( 5) I-E-x(3)-G-R Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 112.0862 5( 5) G-[EP]-R-x-[AIL]-D-L-D-[IL]-[LMV]-[FL]-x-[EGN]-[DNR]-x(2)-[IL]-x-[NST]-[DE]-[DQRS]-L-x-[ILV]-P-H-x(2)-[IMV]-x-[EN]-R-x-F-[MV]-[IL]-x-[PS]-L-x-[DE]-I-[ACS]-x(2)-[FLV]-x(2)-[EP] B 2: 104.7460 5( 5) R-x-[AIL]-D-L-D-[IL]-[LMV]-[FL]-x-[EGN]-[DNR]-x(2)-[IL]-x-[NST]-[DE]-[DQRS]-L-x-[ILV]-P-H-x(2)-[IMV]-x-[EN]-R-x-F-[MV]-[IL]-x-[PS]-L-x-[DE]-I-[ACS]-x(2)-[FLV]-x(2)-[EP] C 3: 63.1212 7( 5) I-x(4,5)-L-x-[ILV]-P-H-x(2)-[IMV]-x-[EN]-R-x-F-[MV]-[IL]-x-[PS]-L-x-[DE]-I-[ACS]-x(2)-[FLV]-x(2)-[EP] D 4: 59.4511 5( 5) L-x-[ILV]-P-H-x(2)-[IMV]-x-[EN]-R-x-F-[MV]-[IL]-x-[PS]-L-x-[DE]-I-[ACS]-x(2)-[FLV]-x(2)-[EP] E 5: 57.0833 5( 5) A-x(1,2)-I-[AS]-[IL]-G-S-N-[ILM]-[AGN]-[DNST]-x(4)-[ILV]-x-[ADQ]-A-[ILV]-x(2)-[ILM]-x(3)-[AGPS]-x(3)-[ILV]-x(2)-[STV] F 6: 56.5833 5( 5) A-x(0,2)-I-[AS]-[IL]-G-S-N-[ILM]-[AGN]-[DNST]-x(4)-[ILV]-x-[ADQ]-A-[ILV]-x(2)-[ILM]-x(3)-[AGPS]-x(3)-[ILV]-x(2)-[STV] G 7: 55.7089 5( 5) N-x(1,2)-V-x(3,4)-T-x-L-x-[AP]-x(2)-L-L-x(5)-I-E-x-[EQ]-x-G-R-[TV]-[KR]-x(2)-[DEHR] H 8: 55.2538 5( 5) T-x(0,1)-L-x-[ALP]-x(2)-[LM]-L-x(5)-I-[ENQ]-x-E-x(0,2)-R-x(3)-[IPV]-[DHR]-x-[DG]-x-[HKR]-x(2)-[DEG]-[FL]-x-[IL]-x(4)-[DER] I 9: 55.2089 6( 5) A-x(0,2)-V-x(3,4)-T-x-L-x-[AP]-x(2)-L-L-x(5)-I-E-x-[EQ]-x-G-R-[TV]-[KR]-x(2)-[DEHR] J 10: 52.6193 5( 5) P-H-x(2)-[IMV]-x-[EN]-R-x-F-[MV]-[IL]-x-[PS]-L-x-[DE]-I-[ACS]-x(2)-[FLV]-x(2)-[EP] K 11: 49.1175 6( 5) A-x(0,2)-I-x(0,2)-G-S-N-[ILM]-[AGN]-[DNST]-x(4)-[ILV]-x-[ADQ]-A-[ILV]-x(2)-[ILM]-x(3)-[AGPS]-x(3)-[ILV]-x(2)-[STV] L 12: 48.4492 5( 5) H-x(2)-[IMV]-x-[EN]-R-x-F-[MV]-[IL]-x-[PS]-L-x-[DE]-I-[ACS]-x(2)-[FLV]-x(2)-[EP] M 13: 48.3177 5( 5) T-x-L-x(0,1)-P-x(2,3)-L-L-x(5)-I-E-x-[EQ]-x-G-R-[TV]-[KR]-x(2)-[DEHR] N 14: 44.1476 5( 5) L-x(0,1)-P-x(2,3)-L-L-x(5)-I-E-x-[EQ]-x-G-R-[TV]-[KR]-x(2)-[DEHR] O 15: 40.4776 5( 5) P-x(2,3)-L-L-x(5)-I-E-x-[EQ]-x-G-R-[TV]-[KR]-x(2)-[DEHR] P 16: 36.8075 5( 5) L-L-x(5)-I-E-x-[EQ]-x-G-R-[TV]-[KR]-x(2)-[DEHR] Q 17: 32.6375 5( 5) L-x(5)-I-E-x-[EQ]-x-G-R-[TV]-[KR]-x(2)-[DEHR] R 18: 28.4674 5( 5) I-E-x-[EQ]-x-G-R-[TV]-[KR]-x(2)-[DEHR] S 19: 19.8503 6( 5) V-x(3,4)-T-x-L-x(0,1)-P-x(3)-L T 20: 19.8503 5( 5) A-x(0,2)-I-x(2)-G-S-N Best patterns with alignements: fitness hits(seqs) Pattern A 1: 112.0862 5( 5) G-[EP]-R-x-[AIL]-D-L-D-[IL]-[LMV]-[FL]-x-[EGN]-[DNR]-x(2)-[IL]-x-[NST]-[DE]-[DQRS]-L-x-[ILV]-P-H-x(2)-[IMV]-x-[EN]-R-x-F-[MV]-[IL]-x-[PS]-L-x-[DE]-I-[ACS]-x(2)-[FLV]-x(2)-[EP] Occurences: 5(5) FAS_PNECA : 381- 429: kvidk GPRcIDLDIVFyGRkiInSESLiIPHprVlERsFVLkPLlDISgdLvhP vtgls HPPK_BACSU : 91- 139: revrw GPRtADLDILLfNRenIeTEQLiVPHprMyERlFVLaPLaEICqqVekE atsae HPPK_ECOLI : 90- 138: kaerw GPRtLDLDIMLfGNevInTERLtVPHydMkNRgFMLwPLfEIApeLvfP dgeml HPPK_HAEIN : 90- 138: rlrrw GERtLDLDILLyGNeiIqNERLtIPHydMhNReFVIvPLfEIAsdLvlP nsqii HPPK_STRPN : 207- 255: revhw GPRlIDLDLLFvEDqiLyTDDLiLPHpyIaERlFVLeSLqEIAphFihP ilkqp B 2: 104.7460 5( 5) R-x-[AIL]-D-L-D-[IL]-[LMV]-[FL]-x-[EGN]-[DNR]-x(2)-[IL]-x-[NST]-[DE]-[DQRS]-L-x-[ILV]-P-H-x(2)-[IMV]-x-[EN]-R-x-F-[MV]-[IL]-x-[PS]-L-x-[DE]-I-[ACS]-x(2)-[FLV]-x(2)-[EP] Occurences: 5(5) FAS_PNECA : 383- 429: idkgp RcIDLDIVFyGRkiInSESLiIPHprVlERsFVLkPLlDISgdLvhP vtgls HPPK_BACSU : 93- 139: vrwgp RtADLDILLfNRenIeTEQLiVPHprMyERlFVLaPLaEICqqVekE atsae HPPK_ECOLI : 92- 138: erwgp RtLDLDIMLfGNevInTERLtVPHydMkNRgFMLwPLfEIApeLvfP dgeml HPPK_HAEIN : 92- 138: rrwge RtLDLDILLyGNeiIqNERLtIPHydMhNReFVIvPLfEIAsdLvlP nsqii HPPK_STRPN : 209- 255: vhwgp RlIDLDLLFvEDqiLyTDDLiLPHpyIaERlFVLeSLqEIAphFihP ilkqp C 3: 63.1212 7( 5) I-x(4,5)-L-x-[ILV]-P-H-x(2)-[IMV]-x-[EN]-R-x-F-[MV]-[IL]-x-[PS]-L-x-[DE]-I-[ACS]-x(2)-[FLV]-x(2)-[EP] Occurences: 7(5) FAS_PNECA : 396- 429: fygrk IinsesLiIPHprVlERsFVLkPLlDISgdLvhP vtgls FAS_PNECA : 397- 429: ygrki Inses-LiIPHprVlERsFVLkPLlDISgdLvhP vtgls HPPK_BACSU : 107- 139: fnren Ieteq-LiVPHprMyERlFVLaPLaEICqqVekE atsae HPPK_ECOLI : 106- 138: fgnev Inter-LtVPHydMkNRgFMLwPLfEIApeLvfP dgeml HPPK_HAEIN : 105- 138: lygne IiqnerLtIPHydMhNReFVIvPLfEIAsdLvlP nsqii HPPK_HAEIN : 106- 138: ygnei Iqner-LtIPHydMhNReFVIvPLfEIAsdLvlP nsqii HPPK_STRPN : 222- 255: fvedq IlytddLiLPHpyIaERlFVLeSLqEIAphFihP ilkqp D 4: 59.4511 5( 5) L-x-[ILV]-P-H-x(2)-[IMV]-x-[EN]-R-x-F-[MV]-[IL]-x-[PS]-L-x-[DE]-I-[ACS]-x(2)-[FLV]-x(2)-[EP] Occurences: 5(5) FAS_PNECA : 402- 429: inses LiIPHprVlERsFVLkPLlDISgdLvhP vtgls HPPK_BACSU : 112- 139: ieteq LiVPHprMyERlFVLaPLaEICqqVekE atsae HPPK_ECOLI : 111- 138: inter LtVPHydMkNRgFMLwPLfEIApeLvfP dgeml HPPK_HAEIN : 111- 138: iqner LtIPHydMhNReFVIvPLfEIAsdLvlP nsqii HPPK_STRPN : 228- 255: lytdd LiLPHpyIaERlFVLeSLqEIAphFihP ilkqp E 5: 57.0833 5( 5) A-x(1,2)-I-[AS]-[IL]-G-S-N-[ILM]-[AGN]-[DNST]-x(4)-[ILV]-x-[ADQ]-A-[ILV]-x(2)-[ILM]-x(3)-[AGPS]-x(3)-[ILV]-x(2)-[STV] Occurences: 5(5) FAS_PNECA : 295- 329: sidne AvyISLGSNLGNrikfIlDAIekMsikGikvLktS mlyes HPPK_BACSU : 5- 38: mnni Ay-IALGSNIGDretyLrQAValLhqhAavtVtkV ssiye HPPK_ECOLI : 3- 36: tv Ay-IAIGSNLASpleqVnAALkaLgdiPeshIltV ssfyr HPPK_HAEIN : 4- 37: mit Ay-IALGSNLNTpveqLhAALkaIsqlSnthLvtT ssfyk HPPK_STRPN : 122- 155: rrkqr Af-IALGSNMGDkqanLkQAIdkLrarGihiLkeS qclsd F 6: 56.5833 5( 5) A-x(0,2)-I-[AS]-[IL]-G-S-N-[ILM]-[AGN]-[DNST]-x(4)-[ILV]-x-[ADQ]-A-[ILV]-x(2)-[ILM]-x(3)-[AGPS]-x(3)-[ILV]-x(2)-[STV] Occurences: 5(5) FAS_PNECA : 295- 329: sidne AvyISLGSNLGNrikfIlDAIekMsikGikvLktS mlyes HPPK_BACSU : 5- 38: mnni Ay-IALGSNIGDretyLrQAValLhqhAavtVtkV ssiye HPPK_ECOLI : 3- 36: tv Ay-IAIGSNLASpleqVnAALkaLgdiPeshIltV ssfyr HPPK_HAEIN : 4- 37: mit Ay-IALGSNLNTpveqLhAALkaIsqlSnthLvtT ssfyk HPPK_STRPN : 122- 155: rrkqr Af-IALGSNMGDkqanLkQAIdkLrarGihiLkeS qclsd G 7: 55.7089 5( 5) N-x(1,2)-V-x(3,4)-T-x-L-x-[AP]-x(2)-L-L-x(5)-I-E-x-[EQ]-x-G-R-[TV]-[KR]-x(2)-[DEHR] Occurences: 5(5) FAS_PNECA : 347- 379: qpafy Na-VckvqTsLhPeqLLfelqlIEkElGRVKviD kgprc HPPK_BACSU : 57- 89: qaqfl NmaVeik-TsLnPfeLLeltqqIEnElGRTRevR wgprt HPPK_ECOLI : 55- 87: qpdyl NaaVale-TsLaPeeLLnhtqrIElQqGRVRkaE rwgpr HPPK_HAEIN : 56- 88: qpdyv Na-VakieTeLsPlkLLdelqrIEnEqGRVRlrR wgert HPPK_STRPN : 173- 205: agcfa NqvVeve-TwLpAqdLLetllaIEsElGRVRevH wgprl HPPK_STRPN : 173- 205: agcfa Nq-VveveTwLpAqdLLetllaIEsElGRVRevH wgprl H 8: 55.2538 5( 5) T-x(0,1)-L-x-[ALP]-x(2)-[LM]-L-x(5)-I-[ENQ]-x-E-x(0,2)-R-x(3)-[IPV]-[DHR]-x-[DG]-x-[HKR]-x(2)-[DEG]-[FL]-x-[IL]-x(4)-[DER] Occurences: 5(5) FAS_PNECA : 354- 394: vckvq TsLhPeqLLfelqlIEkElgRvkvIDkGpRciDLdIvfygR kiins HPPK_BACSU : 64- 104: aveik TsLnPfeLLeltqqIEnElgRtreVRwGpRtaDLdIllfnR eniet HPPK_ECOLI : 93- 130: rwgpr T-LdLdiMLfgnevINtE--RltvPHyDmKnrGFmLwplfE iapel HPPK_HAEIN : 93- 130: rwger T-LdLdiLLygneiIQnE--RltiPHyDmHnrEFvIvplfE iasdl HPPK_STRPN : 180- 220: vveve TwLpAqdLLetllaIEsElgRvreVHwGpRliDLdLlfveD qilyt I 9: 55.2089 6( 5) A-x(0,2)-V-x(3,4)-T-x-L-x-[AP]-x(2)-L-L-x(5)-I-E-x-[EQ]-x-G-R-[TV]-[KR]-x(2)-[DEHR] Occurences: 6(5) FAS_PNECA : 348- 379: pafyn A--VckvqTsLhPeqLLfelqlIEkElGRVKviD kgprc HPPK_BACSU : 59- 89: qflnm A--Veik-TsLnPfeLLeltqqIEnElGRTRevR wgprt HPPK_ECOLI : 56- 87: pdyln Aa-Vale-TsLaPeeLLnhtqrIElQqGRVRkaE rwgpr HPPK_ECOLI : 57- 87: dylna A--Vale-TsLaPeeLLnhtqrIElQqGRVRkaE rwgpr HPPK_HAEIN : 57- 88: pdyvn A--VakieTeLsPlkLLdelqrIEnEqGRVRlrR wgert HPPK_STRPN : 172- 205: gagcf AnqVveveTwLpAqdLLetllaIEsElGRVRevH wgprl J 10: 52.6193 5( 5) P-H-x(2)-[IMV]-x-[EN]-R-x-F-[MV]-[IL]-x-[PS]-L-x-[DE]-I-[ACS]-x(2)-[FLV]-x(2)-[EP] Occurences: 5(5) FAS_PNECA : 405- 429: eslii PHprVlERsFVLkPLlDISgdLvhP vtgls HPPK_BACSU : 115- 139: eqliv PHprMyERlFVLaPLaEICqqVekE atsae HPPK_ECOLI : 114- 138: erltv PHydMkNRgFMLwPLfEIApeLvfP dgeml HPPK_HAEIN : 114- 138: erlti PHydMhNReFVIvPLfEIAsdLvlP nsqii HPPK_STRPN : 231- 255: ddlil PHpyIaERlFVLeSLqEIAphFihP ilkqp K 11: 49.1175 6( 5) A-x(0,2)-I-x(0,2)-G-S-N-[ILM]-[AGN]-[DNST]-x(4)-[ILV]-x-[ADQ]-A-[ILV]-x(2)-[ILM]-x(3)-[AGPS]-x(3)-[ILV]-x(2)-[STV] Occurences: 6(5) FAS_PNECA : 295- 329: sidne AvyIslGSNLGNrikfIlDAIekMsikGikvLktS mlyes HPPK_BACSU : 5- 38: mnni Ay-IalGSNIGDretyLrQAValLhqhAavtVtkV ssiye HPPK_ECOLI : 3- 36: tv Ay-IaiGSNLASpleqVnAALkaLgdiPeshIltV ssfyr HPPK_ECOLI : 6- 36: tvayi A--I--GSNLASpleqVnAALkaLgdiPeshIltV ssfyr HPPK_HAEIN : 4- 37: mit Ay-IalGSNLNTpveqLhAALkaIsqlSnthLvtT ssfyk HPPK_STRPN : 122- 155: rrkqr Af-IalGSNMGDkqanLkQAIdkLrarGihiLkeS qclsd L 12: 48.4492 5( 5) H-x(2)-[IMV]-x-[EN]-R-x-F-[MV]-[IL]-x-[PS]-L-x-[DE]-I-[ACS]-x(2)-[FLV]-x(2)-[EP] Occurences: 5(5) FAS_PNECA : 406- 429: sliip HprVlERsFVLkPLlDISgdLvhP vtgls HPPK_BACSU : 116- 139: qlivp HprMyERlFVLaPLaEICqqVekE atsae HPPK_ECOLI : 115- 138: rltvp HydMkNRgFMLwPLfEIApeLvfP dgeml HPPK_HAEIN : 115- 138: rltip HydMhNReFVIvPLfEIAsdLvlP nsqii HPPK_STRPN : 232- 255: dlilp HpyIaERlFVLeSLqEIAphFihP ilkqp M 13: 48.3177 5( 5) T-x-L-x(0,1)-P-x(2,3)-L-L-x(5)-I-E-x-[EQ]-x-G-R-[TV]-[KR]-x(2)-[DEHR] Occurences: 5(5) FAS_PNECA : 354- 379: vckvq TsLhPeq-LLfelqlIEkElGRVKviD kgprc HPPK_BACSU : 64- 89: aveik TsLnPfe-LLeltqqIEnElGRTRevR wgprt HPPK_ECOLI : 62- 87: avale TsLaPee-LLnhtqrIElQqGRVRkaE rwgpr HPPK_HAEIN : 63- 88: vakie TeLsPlk-LLdelqrIEnEqGRVRlrR wgert HPPK_STRPN : 180- 205: vveve TwL-PaqdLLetllaIEsElGRVRevH wgprl N 14: 44.1476 5( 5) L-x(0,1)-P-x(2,3)-L-L-x(5)-I-E-x-[EQ]-x-G-R-[TV]-[KR]-x(2)-[DEHR] Occurences: 5(5) FAS_PNECA : 356- 379: kvqts LhPeq-LLfelqlIEkElGRVKviD kgprc HPPK_BACSU : 66- 89: eikts LnPfe-LLeltqqIEnElGRTRevR wgprt HPPK_ECOLI : 64- 87: alets LaPee-LLnhtqrIElQqGRVRkaE rwgpr HPPK_HAEIN : 65- 88: kiete LsPlk-LLdelqrIEnEqGRVRlrR wgert HPPK_STRPN : 182- 205: evetw L-PaqdLLetllaIEsElGRVRevH wgprl O 15: 40.4776 5( 5) P-x(2,3)-L-L-x(5)-I-E-x-[EQ]-x-G-R-[TV]-[KR]-x(2)-[DEHR] Occurences: 5(5) FAS_PNECA : 358- 379: qtslh Peq-LLfelqlIEkElGRVKviD kgprc HPPK_BACSU : 68- 89: ktsln Pfe-LLeltqqIEnElGRTRevR wgprt HPPK_ECOLI : 66- 87: etsla Pee-LLnhtqrIElQqGRVRkaE rwgpr HPPK_HAEIN : 67- 88: etels Plk-LLdelqrIEnEqGRVRlrR wgert HPPK_STRPN : 183- 205: vetwl PaqdLLetllaIEsElGRVRevH wgprl P 16: 36.8075 5( 5) L-L-x(5)-I-E-x-[EQ]-x-G-R-[TV]-[KR]-x(2)-[DEHR] Occurences: 5(5) FAS_PNECA : 361- 379: lhpeq LLfelqlIEkElGRVKviD kgprc HPPK_BACSU : 71- 89: lnpfe LLeltqqIEnElGRTRevR wgprt HPPK_ECOLI : 69- 87: lapee LLnhtqrIElQqGRVRkaE rwgpr HPPK_HAEIN : 70- 88: lsplk LLdelqrIEnEqGRVRlrR wgert HPPK_STRPN : 187- 205: lpaqd LLetllaIEsElGRVRevH wgprl Q 17: 32.6375 5( 5) L-x(5)-I-E-x-[EQ]-x-G-R-[TV]-[KR]-x(2)-[DEHR] Occurences: 5(5) FAS_PNECA : 362- 379: hpeql LfelqlIEkElGRVKviD kgprc HPPK_BACSU : 72- 89: npfel LeltqqIEnElGRTRevR wgprt HPPK_ECOLI : 70- 87: apeel LnhtqrIElQqGRVRkaE rwgpr HPPK_HAEIN : 71- 88: splkl LdelqrIEnEqGRVRlrR wgert HPPK_STRPN : 188- 205: paqdl LetllaIEsElGRVRevH wgprl R 18: 28.4674 5( 5) I-E-x-[EQ]-x-G-R-[TV]-[KR]-x(2)-[DEHR] Occurences: 5(5) FAS_PNECA : 368- 379: felql IEkElGRVKviD kgprc HPPK_BACSU : 78- 89: eltqq IEnElGRTRevR wgprt HPPK_ECOLI : 76- 87: nhtqr IElQqGRVRkaE rwgpr HPPK_HAEIN : 77- 88: delqr IEnEqGRVRlrR wgert HPPK_STRPN : 194- 205: etlla IEsElGRVRevH wgprl S 19: 19.8503 6( 5) V-x(3,4)-T-x-L-x(0,1)-P-x(3)-L Occurences: 6(5) FAS_PNECA : 349- 362: afyna VckvqTsLhPeqlL felql HPPK_BACSU : 60- 72: flnma Veik-TsLnPfelL eltqq HPPK_ECOLI : 58- 70: ylnaa Vale-TsLaPeelL nhtqr HPPK_HAEIN : 58- 71: dyvna VakieTeLsPlklL delqr HPPK_STRPN : 175- 187: cfanq VveveTwL-PaqdL letll HPPK_STRPN : 176- 187: fanqv Veve-TwL-PaqdL letll T 20: 19.8503 5( 5) A-x(0,2)-I-x(2)-G-S-N Occurences: 5(5) FAS_PNECA : 295- 303: sidne AvyIslGSN lgnri HPPK_BACSU : 5- 12: mnni Ay-IalGSN igdre HPPK_ECOLI : 3- 10: tv Ay-IaiGSN laspl HPPK_HAEIN : 4- 11: mit Ay-IalGSN lntpv HPPK_STRPN : 122- 129: rrkqr Af-IalGSN mgdkq Number of patterns evaluated by Pratt:3299 Total running time: 2 seconds