------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 8 sequences from file HOK_GEF PATTERN CONSERVATION: CM: min Nr of Seqs to Match 8 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename HOK_GEF.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: FLMA_ECOLI 52 GEF_ECOLI 50 HOK_ECOLI 52 PND1_ECOLI 50 PND2_ECOLI 50 RELF_ECOLI 51 SRNB_ECOLI 68 YIAZ_ECOLI 50 Pratt run started at Thu Feb 6 19:55:38 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 16.1802 8( 8) L-x-V-x(0,1)-C-x-T 2: 12.5102 8( 8) R-x(2)-L-C 3: 12.0102 9( 8) V-x(0,1)-C-x-T 4: 12.0102 10( 8) L-x(0,1)-I-x(4)-T 5: 12.0102 10( 8) L-x(3,4)-I-x(4)-T 6: 11.5102 9( 8) R-x(2)-L-x(3,5)-I 7: 11.0102 11( 8) L-x(0,1)-V-x(1,3)-T 8: 8.3401 8( 8) Y-E 9: 8.3401 14( 8) V-x(4)-L 10: 8.3401 11( 8) L-C 11: 8.3401 8( 8) C-x-T 12: 8.3401 8( 8) V-x-C 13: 8.3401 11( 8) I-x(4)-T 14: 8.3401 12( 8) L-I 15: 7.8401 10( 8) A-x(3,4)-K 16: 7.8401 11( 8) L-x(1,2)-E 17: 7.8401 15( 8) A-x(2,3)-A 18: 7.8401 18( 8) V-x(2,3)-T 19: 7.8401 8( 8) T-x(4,5)-T 20: 7.8401 15( 8) L-x(4,5)-T Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 68.6057 8( 8) L-[AI]-V-x(0,1)-C-x-T-[AILV]-[ILV]-x(2)-[ASTV]-x-[ILMV]-x-R-[DEK]-[DRS]-L-C-[EG]-[FILV]-x(4)-[DEG]-x(3)-[LV]-x-[AV]-x(2)-A-x-[EK] B 2: 61.1438 9( 8) V-x(0,1)-C-x-T-[AILV]-[ILV]-x(2)-[ASTV]-x-[ILMV]-x-R-[DEK]-[DRS]-L-C-[EG]-[FILV]-x(4)-[DEG]-x(3)-[LV]-x-[AV]-x(2)-A-x-[EK] C 3: 57.4737 8( 8) C-x-T-[AILV]-[ILV]-x(2)-[ASTV]-x-[ILMV]-x-R-[DEK]-[DRS]-L-C-[EG]-[FILV]-x(4)-[DEG]-x(3)-[LV]-x-[AV]-x(2)-A-x-[EK] D 4: 56.9737 9( 8) L-x(4,5)-T-[AILV]-[ILV]-x(2)-[ASTV]-x-[ILMV]-x-R-[DEK]-[DRS]-L-C-[EG]-[FILV]-x(4)-[DEG]-x(3)-[LV]-x-[AV]-x(2)-A-x-[EK] E 5: 39.6517 8( 8) R-[DEK]-[DRS]-L-C-[EG]-[FILV]-x(4)-[DEG]-x(3)-[LV]-x-[AV]-x(2)-A-x-[EK] F 6: 30.2266 8( 8) L-C-[EG]-[FILV]-x(4)-[DEG]-x(3)-[LV]-x-[AV]-x(2)-A-x-[EK] G 7: 21.6215 8( 8) V-x-C-[FILV]-x-[AILV]-[ILV]-x(4)-[LMV]-x(4)-[IL] H 8: 15.8468 10( 8) L-x(0,1)-V-x(1,3)-T-[AILV]-[ALV] I 9: 15.3021 8( 8) L-[AI]-V-x(0,1)-C J 10: 14.6600 8( 8) L-x(3,4)-I-x(4)-T-x(3)-[FLV] K 11: 14.2544 10( 8) L-x(0,1)-I-x(4)-T-x(4)-[ACTV] L 12: 12.6767 13( 8) V-x(2,3)-T-[AILV]-[ALV] M 13: 11.5517 10( 8) L-I-[FV] N 14: 11.5102 9( 8) R-x(2)-L-x(3,5)-I O 15: 11.0514 11( 8) A-x(2,3)-A-x-[EK] P 16: 10.9900 8( 8) I-x(4)-T-x(3)-[FLV] Q 17: 10.9612 8( 8) V-x(3)-[CDT]-L R 18: 10.5019 8( 8) L-x(1,2)-E-[ILV] S 19: 8.3401 8( 8) Y-E T 20: 7.8401 9( 8) V-x(0,1)-C Best patterns with alignements: fitness hits(seqs) Pattern A 1: 68.6057 8( 8) L-[AI]-V-x(0,1)-C-x-T-[AILV]-[ILV]-x(2)-[ASTV]-x-[ILMV]-x-R-[DEK]-[DRS]-L-C-[EG]-[FILV]-x(4)-[DEG]-x(3)-[LV]-x-[AV]-x(2)-A-x-[EK] Occurences: 8(8) FLMA_ECOLI : 13- 49: lvwcv LIV-ClTLLifTyLtRKSLCEIryrdGyreVaAfmAyE sgk GEF_ECOLI : 11- 48: amiva LIViCiTAVvaAlVtRKDLCEVhirtGqteVaVftAyE se HOK_ECOLI : 13- 49: lvwcv LIV-ClTLLifTyLtRKSLCEIryrdGhreVaAfmAyE sgk PND1_ECOLI : 10- 47: tflmm LIVvCvTILcfVwMvRDSLCGFrieqGntvLvAtlAyE vkr PND2_ECOLI : 10- 47: tflmm LIViCvTILcfVwMvRDSLCGLrlqqGntvLvAtlAyE vkr RELF_ECOLI : 11- 48: amlia LIViClTVIvtAlVtRKDLCEVrirtDqteVaVftAyE pee SRNB_ECOLI : 29- 65: aligl LAV-CaTVLcfSlIfRERLCELnihrGntvVqVtlAyE ark YIAZ_ECOLI : 10- 47: yrlls LIViCfTLLffTwMiRDSLCELhikqEsyeLaAflAcK lke B 2: 61.1438 9( 8) V-x(0,1)-C-x-T-[AILV]-[ILV]-x(2)-[ASTV]-x-[ILMV]-x-R-[DEK]-[DRS]-L-C-[EG]-[FILV]-x(4)-[DEG]-x(3)-[LV]-x-[AV]-x(2)-A-x-[EK] Occurences: 9(8) FLMA_ECOLI : 15- 49: wcvli V-ClTLLifTyLtRKSLCEIryrdGyreVaAfmAyE sgk GEF_ECOLI : 13- 48: ivali ViCiTAVvaAlVtRKDLCEVhirtGqteVaVftAyE se HOK_ECOLI : 15- 49: wcvli V-ClTLLifTyLtRKSLCEIryrdGhreVaAfmAyE sgk PND1_ECOLI : 12- 47: lmmli VvCvTILcfVwMvRDSLCGFrieqGntvLvAtlAyE vkr PND1_ECOLI : 13- 47: mmliv V-CvTILcfVwMvRDSLCGFrieqGntvLvAtlAyE vkr PND2_ECOLI : 12- 47: lmmli ViCvTILcfVwMvRDSLCGLrlqqGntvLvAtlAyE vkr RELF_ECOLI : 13- 48: liali ViClTVIvtAlVtRKDLCEVrirtDqteVaVftAyE pee SRNB_ECOLI : 31- 65: iglla V-CaTVLcfSlIfRERLCELnihrGntvVqVtlAyE ark YIAZ_ECOLI : 12- 47: llsli ViCfTLLffTwMiRDSLCELhikqEsyeLaAflAcK lke C 3: 57.4737 8( 8) C-x-T-[AILV]-[ILV]-x(2)-[ASTV]-x-[ILMV]-x-R-[DEK]-[DRS]-L-C-[EG]-[FILV]-x(4)-[DEG]-x(3)-[LV]-x-[AV]-x(2)-A-x-[EK] Occurences: 8(8) FLMA_ECOLI : 16- 49: cvliv ClTLLifTyLtRKSLCEIryrdGyreVaAfmAyE sgk GEF_ECOLI : 15- 48: alivi CiTAVvaAlVtRKDLCEVhirtGqteVaVftAyE se HOK_ECOLI : 16- 49: cvliv ClTLLifTyLtRKSLCEIryrdGhreVaAfmAyE sgk PND1_ECOLI : 14- 47: mlivv CvTILcfVwMvRDSLCGFrieqGntvLvAtlAyE vkr PND2_ECOLI : 14- 47: mlivi CvTILcfVwMvRDSLCGLrlqqGntvLvAtlAyE vkr RELF_ECOLI : 15- 48: alivi ClTVIvtAlVtRKDLCEVrirtDqteVaVftAyE pee SRNB_ECOLI : 32- 65: gllav CaTVLcfSlIfRERLCELnihrGntvVqVtlAyE ark YIAZ_ECOLI : 14- 47: slivi CfTLLffTwMiRDSLCELhikqEsyeLaAflAcK lke D 4: 56.9737 9( 8) L-x(4,5)-T-[AILV]-[ILV]-x(2)-[ASTV]-x-[ILMV]-x-R-[DEK]-[DRS]-L-C-[EG]-[FILV]-x(4)-[DEG]-x(3)-[LV]-x-[AV]-x(2)-A-x-[EK] Occurences: 9(8) FLMA_ECOLI : 13- 49: lvwcv Livcl-TLLifTyLtRKSLCEIryrdGyreVaAfmAyE sgk GEF_ECOLI : 11- 48: amiva LiviciTAVvaAlVtRKDLCEVhirtGqteVaVftAyE se HOK_ECOLI : 13- 49: lvwcv Livcl-TLLifTyLtRKSLCEIryrdGhreVaAfmAyE sgk PND1_ECOLI : 10- 47: tflmm LivvcvTILcfVwMvRDSLCGFrieqGntvLvAtlAyE vkr PND2_ECOLI : 10- 47: tflmm LivicvTILcfVwMvRDSLCGLrlqqGntvLvAtlAyE vkr RELF_ECOLI : 11- 48: amlia LiviclTVIvtAlVtRKDLCEVrirtDqteVaVftAyE pee SRNB_ECOLI : 28- 65: yalig LlavcaTVLcfSlIfRERLCELnihrGntvVqVtlAyE ark SRNB_ECOLI : 29- 65: aligl Lavca-TVLcfSlIfRERLCELnihrGntvVqVtlAyE ark YIAZ_ECOLI : 10- 47: yrlls LivicfTLLffTwMiRDSLCELhikqEsyeLaAflAcK lke E 5: 39.6517 8( 8) R-[DEK]-[DRS]-L-C-[EG]-[FILV]-x(4)-[DEG]-x(3)-[LV]-x-[AV]-x(2)-A-x-[EK] Occurences: 8(8) FLMA_ECOLI : 27- 49: ftylt RKSLCEIryrdGyreVaAfmAyE sgk GEF_ECOLI : 26- 48: aalvt RKDLCEVhirtGqteVaVftAyE se HOK_ECOLI : 27- 49: ftylt RKSLCEIryrdGhreVaAfmAyE sgk PND1_ECOLI : 25- 47: fvwmv RDSLCGFrieqGntvLvAtlAyE vkr PND2_ECOLI : 25- 47: fvwmv RDSLCGLrlqqGntvLvAtlAyE vkr RELF_ECOLI : 26- 48: talvt RKDLCEVrirtDqteVaVftAyE pee SRNB_ECOLI : 43- 65: fslif RERLCELnihrGntvVqVtlAyE ark YIAZ_ECOLI : 25- 47: ftwmi RDSLCELhikqEsyeLaAflAcK lke F 6: 30.2266 8( 8) L-C-[EG]-[FILV]-x(4)-[DEG]-x(3)-[LV]-x-[AV]-x(2)-A-x-[EK] Occurences: 8(8) FLMA_ECOLI : 30- 49: ltrks LCEIryrdGyreVaAfmAyE sgk GEF_ECOLI : 29- 48: vtrkd LCEVhirtGqteVaVftAyE se HOK_ECOLI : 30- 49: ltrks LCEIryrdGhreVaAfmAyE sgk PND1_ECOLI : 28- 47: mvrds LCGFrieqGntvLvAtlAyE vkr PND2_ECOLI : 28- 47: mvrds LCGLrlqqGntvLvAtlAyE vkr RELF_ECOLI : 29- 48: vtrkd LCEVrirtDqteVaVftAyE pee SRNB_ECOLI : 46- 65: ifrer LCELnihrGntvVqVtlAyE ark YIAZ_ECOLI : 28- 47: mirds LCELhikqEsyeLaAflAcK lke G 7: 21.6215 8( 8) V-x-C-[FILV]-x-[AILV]-[ILV]-x(4)-[LMV]-x(4)-[IL] Occurences: 8(8) FLMA_ECOLI : 9- 25: prssl VwCVlIVcltlLiftyL trksl GEF_ECOLI : 13- 29: ivali ViCItAVvaalVtrkdL cevhi HOK_ECOLI : 9- 25: prssl VwCVlIVcltlLiftyL trksl PND1_ECOLI : 12- 28: lmmli VvCVtILcfvwMvrdsL cgfri PND2_ECOLI : 12- 28: lmmli ViCVtILcfvwMvrdsL cglrl RELF_ECOLI : 13- 29: liali ViCLtVIvtalVtrkdL cevri SRNB_ECOLI : 35- 51: avcat VlCFsLIfrerLcelnI hrgnt YIAZ_ECOLI : 12- 28: llsli ViCFtLLfftwMirdsL celhi H 8: 15.8468 10( 8) L-x(0,1)-V-x(1,3)-T-[AILV]-[ALV] Occurences: 10(8) FLMA_ECOLI : 13- 20: lvwcv LiVcl-TLL iftyl GEF_ECOLI : 11- 19: amiva LiViciTAV vaalv HOK_ECOLI : 13- 20: lvwcv LiVcl-TLL iftyl PND1_ECOLI : 10- 18: tflmm LiVvcvTIL cfvwm PND1_ECOLI : 40- 45: qgntv L-Va--TLA yevkr PND2_ECOLI : 10- 18: tflmm LiVicvTIL cfvwm PND2_ECOLI : 40- 45: qgntv L-Va--TLA yevkr RELF_ECOLI : 16- 23: livic LtViv-TAL vtrkd SRNB_ECOLI : 29- 36: aligl LaVca-TVL cfsli YIAZ_ECOLI : 10- 18: yrlls LiVicfTLL fftwm I 9: 15.3021 8( 8) L-[AI]-V-x(0,1)-C Occurences: 8(8) FLMA_ECOLI : 13- 16: lvwcv LIV-C ltlli GEF_ECOLI : 11- 15: amiva LIViC itavv HOK_ECOLI : 13- 16: lvwcv LIV-C ltlli PND1_ECOLI : 10- 14: tflmm LIVvC vtilc PND2_ECOLI : 10- 14: tflmm LIViC vtilc RELF_ECOLI : 11- 15: amlia LIViC ltviv SRNB_ECOLI : 29- 32: aligl LAV-C atvlc YIAZ_ECOLI : 10- 14: yrlls LIViC ftllf J 10: 14.6600 8( 8) L-x(3,4)-I-x(4)-T-x(3)-[FLV] Occurences: 8(8) FLMA_ECOLI : 17- 30: vlivc Ltll-IftylTrksL ceiry GEF_ECOLI : 29- 43: vtrkd LcevhIrtgqTevaV ftaye HOK_ECOLI : 17- 30: vlivc Ltll-IftylTrksL ceiry PND1_ECOLI : 7- 20: pqrtf Lmml-IvvcvTilcF vwmvr PND2_ECOLI : 7- 20: pqrtf Lmml-IvicvTilcF vwmvr RELF_ECOLI : 29- 43: vtrkd LcevrIrtdqTevaV ftaye SRNB_ECOLI : 46- 60: ifrer LcelnIhrgnTvvqV tlaye YIAZ_ECOLI : 7- 20: pqkyr Llsl-IvicfTllfF twmir K 11: 14.2544 10( 8) L-x(0,1)-I-x(4)-T-x(4)-[ACTV] Occurences: 10(8) FLMA_ECOLI : 19- 31: ivclt LlIftylTrkslC eiryr FLMA_ECOLI : 20- 31: vcltl L-IftylTrkslC eiryr GEF_ECOLI : 11- 22: amiva L-IviciTavvaA lvtrk HOK_ECOLI : 19- 31: ivclt LlIftylTrkslC eiryr HOK_ECOLI : 20- 31: vcltl L-IftylTrkslC eiryr PND1_ECOLI : 10- 21: tflmm L-IvvcvTilcfV wmvrd PND2_ECOLI : 10- 21: tflmm L-IvicvTilcfV wmvrd RELF_ECOLI : 11- 22: amlia L-IviclTvivtA lvtrk SRNB_ECOLI : 49- 61: erlce LnIhrgnTvvqvT layea YIAZ_ECOLI : 10- 21: yrlls L-IvicfTllffT wmird L 12: 12.6767 13( 8) V-x(2,3)-T-[AILV]-[ALV] Occurences: 13(8) FLMA_ECOLI : 15- 20: wcvli Vcl-TLL iftyl GEF_ECOLI : 13- 19: ivali ViciTAV vaalv HOK_ECOLI : 15- 20: wcvli Vcl-TLL iftyl PND1_ECOLI : 12- 18: lmmli VvcvTIL cfvwm PND1_ECOLI : 13- 18: mmliv Vcv-TIL cfvwm PND1_ECOLI : 39- 45: eqgnt VlvaTLA yevkr PND2_ECOLI : 12- 18: lmmli VicvTIL cfvwm PND2_ECOLI : 39- 45: qqgnt VlvaTLA yevkr RELF_ECOLI : 18- 23: viclt Viv-TAL vtrkd SRNB_ECOLI : 31- 36: iglla Vca-TVL cfsli SRNB_ECOLI : 57- 63: hrgnt VvqvTLA yeark SRNB_ECOLI : 58- 63: rgntv Vqv-TLA yeark YIAZ_ECOLI : 12- 18: llsli VicfTLL fftwm M 13: 11.5517 10( 8) L-I-[FV] Occurences: 10(8) FLMA_ECOLI : 13- 15: lvwcv LIV cltll FLMA_ECOLI : 20- 22: vcltl LIF tyltr GEF_ECOLI : 11- 13: amiva LIV icita HOK_ECOLI : 13- 15: lvwcv LIV cltll HOK_ECOLI : 20- 22: vcltl LIF tyltr PND1_ECOLI : 10- 12: tflmm LIV vcvti PND2_ECOLI : 10- 12: tflmm LIV icvti RELF_ECOLI : 11- 13: amlia LIV icltv SRNB_ECOLI : 40- 42: vlcfs LIF rerlc YIAZ_ECOLI : 10- 12: yrlls LIV icftl N 14: 11.5102 9( 8) R-x(2)-L-x(3,5)-I Occurences: 9(8) FLMA_ECOLI : 5- 14: mklp RssLvwcvlI vcltl GEF_ECOLI : 26- 34: aalvt RkdLcevh-I rtgqt HOK_ECOLI : 5- 14: mklp RssLvwcvlI vcltl PND1_ECOLI : 4- 11: mpq RtfLmml--I vvcvt PND1_ECOLI : 25- 33: fvwmv RdsLcgfr-I eqgnt PND2_ECOLI : 4- 11: mpq RtfLmml--I vicvt PND2_ECOLI : 4- 13: mpq RtfLmmlivI cvtil RELF_ECOLI : 26- 34: talvt RkdLcevr-I rtdqt SRNB_ECOLI : 43- 51: fslif RerLceln-I hrgnt YIAZ_ECOLI : 25- 33: ftwmi RdsLcelh-I kqesy O 15: 11.0514 11( 8) A-x(2,3)-A-x-[EK] Occurences: 11(8) FLMA_ECOLI : 43- 49: gyrev AafmAyE sgk FLMA_ECOLI : 44- 49: yreva Afm-AyE sgk GEF_ECOLI : 42- 48: gqtev AvftAyE se HOK_ECOLI : 43- 49: ghrev AafmAyE sgk HOK_ECOLI : 44- 49: hreva Afm-AyE sgk PND1_ECOLI : 42- 47: ntvlv Atl-AyE vkr PND2_ECOLI : 42- 47: ntvlv Atl-AyE vkr RELF_ECOLI : 42- 48: dqtev AvftAyE pee SRNB_ECOLI : 63- 68: vqvtl Aye-ArK YIAZ_ECOLI : 41- 47: esyel AaflAcK lke YIAZ_ECOLI : 42- 47: syela Afl-AcK lke P 16: 10.9900 8( 8) I-x(4)-T-x(3)-[FLV] Occurences: 8(8) FLMA_ECOLI : 21- 30: cltll IftylTrksL ceiry GEF_ECOLI : 34- 43: lcevh IrtgqTevaV ftaye HOK_ECOLI : 21- 30: cltll IftylTrksL ceiry PND1_ECOLI : 11- 20: flmml IvvcvTilcF vwmvr PND2_ECOLI : 11- 20: flmml IvicvTilcF vwmvr RELF_ECOLI : 34- 43: lcevr IrtdqTevaV ftaye SRNB_ECOLI : 51- 60: lceln IhrgnTvvqV tlaye YIAZ_ECOLI : 11- 20: rllsl IvicfTllfF twmir Q 17: 10.9612 8( 8) V-x(3)-[CDT]-L Occurences: 8(8) FLMA_ECOLI : 12- 17: slvwc VlivCL tllif GEF_ECOLI : 24- 29: vvaal VtrkDL cevhi HOK_ECOLI : 12- 17: slvwc VlivCL tllif PND1_ECOLI : 39- 44: eqgnt VlvaTL ayevk PND2_ECOLI : 39- 44: qqgnt VlvaTL ayevk RELF_ECOLI : 24- 29: ivtal VtrkDL cevri SRNB_ECOLI : 57- 62: hrgnt VvqvTL ayear YIAZ_ECOLI : 12- 17: llsli VicfTL lfftw R 18: 10.5019 8( 8) L-x(1,2)-E-[ILV] Occurences: 8(8) FLMA_ECOLI : 30- 33: ltrks Lc-EI ryrdg GEF_ECOLI : 29- 32: vtrkd Lc-EV hirtg HOK_ECOLI : 30- 33: ltrks Lc-EI ryrdg PND1_ECOLI : 44- 48: vlvat LayEV kr PND2_ECOLI : 44- 48: vlvat LayEV kr RELF_ECOLI : 29- 32: vtrkd Lc-EV rirtd SRNB_ECOLI : 46- 49: ifrer Lc-EL nihrg YIAZ_ECOLI : 28- 31: mirds Lc-EL hikqe S 19: 8.3401 8( 8) Y-E Occurences: 8(8) FLMA_ECOLI : 48- 49: aafma YE sgk GEF_ECOLI : 47- 48: avfta YE se HOK_ECOLI : 48- 49: aafma YE sgk PND1_ECOLI : 46- 47: vatla YE vkr PND2_ECOLI : 46- 47: vatla YE vkr RELF_ECOLI : 47- 48: avfta YE pee SRNB_ECOLI : 64- 65: qvtla YE ark YIAZ_ECOLI : 38- 39: ikqes YE laafl T 20: 7.8401 9( 8) V-x(0,1)-C Occurences: 9(8) FLMA_ECOLI : 15- 16: wcvli V-C ltlli GEF_ECOLI : 13- 15: ivali ViC itavv HOK_ECOLI : 15- 16: wcvli V-C ltlli PND1_ECOLI : 12- 14: lmmli VvC vtilc PND1_ECOLI : 13- 14: mmliv V-C vtilc PND2_ECOLI : 12- 14: lmmli ViC vtilc RELF_ECOLI : 13- 15: liali ViC ltviv SRNB_ECOLI : 31- 32: iglla V-C atvlc YIAZ_ECOLI : 12- 14: llsli ViC ftllf Number of patterns evaluated by Pratt:60 Total running time: 0 seconds