------------------------------------------------------------ Pratt version 2.1, Sept. 1996 Written by Inge Jonassen, University of Bergen Norway email: inge@ii.uib.no For more information, see http://www.ii.uib.no/~inge/Pratt.html ------------------------------------------------------------ Please quote: I.Jonassen, J.F.Collins, D.G.Higgins. Protein Science 1995;4(8):1587-1595. ------------------------------------------------------------ Pratt version 2.1 Analysing 4 sequences from file HMG_COA_LYASE PATTERN CONSERVATION: CM: min Nr of Seqs to Match 4 C%: min Percentage Seqs to Match 100.0 PATTERN RESTRICTIONS : PP: pos in seq [off,complete,start] off PL: max Pattern Length 50 PN: max Nr of Pattern Symbols 50 PX: max Nr of consecutive x's 5 FN: max Nr of flexible spacers 2 FL: max Flexibility 2 FP: max Flex.Product 10 BI: Input Pattern Symbol File off BN: Nr of Pattern Symbols Initial Search 20 PATTERN SCORING: S: Scoring [info,mdl,tree,dist,ppv] info SEARCH PARAMETERS: G: Pattern Graph from [seq,al,query] seq E: Search Greediness 3 R: Pattern Refinement on RG: Generalise ambiguous symbols off OUTPUT: OF: Output Filename HMG_COA_LYASE.pratt2 OP: PROSITE Pattern Format on ON: max number patterns 20 OA: max number Alignments 20 M: Print Patterns in sequences off Sequence lengths: HMGL_CHICK 298 HMGL_HUMAN 325 HMGL_MOUSE 325 HMGL_PSEMV 301 Pratt run started at Thu Feb 6 19:54:52 1997 Best Patterns before refinement: fitness hits(seqs) Pattern 1: 144.9518 4( 4) A-L-x(0,1)-Q-x(0,1)-G-V-x(3)-D-x-S-V-A-G-L-G-G-C-P-Y-x(2)-G-A-S-G-N-x-A-T-E-D-L-x-Y-x-L-x-G-L-G-x(2)-T-G-V-x-L 2: 140.7817 4( 4) L-x(0,1)-Q-x(0,1)-G-V-x(3)-D-x-S-V-A-G-L-G-G-C-P-Y-x(2)-G-A-S-G-N-x-A-T-E-D-L-x-Y-x-L-x-G-L-G-x(2)-T-G-V-x-L 3: 140.7817 4( 4) N-x(3)-A-L-x(0,1)-Q-x(0,1)-G-V-x(3)-D-x-S-V-A-G-L-G-G-C-P-Y-x(2)-G-A-S-G-N-x-A-T-E-D-L-x-Y-x-L-x-G-L-G-x(2)-T-G 4: 136.6117 4( 4) A-x(2)-N-x(3)-A-L-x(0,1)-Q-x(0,1)-G-V-x(3)-D-x-S-V-A-G-L-G-G-C-P-Y-x(2)-G-A-S-G-N-x-A-T-E-D-L-x-Y-x-L-x-G-L-G 5: 136.6117 4( 4) D-T-x-G-x-A-x(2)-N-x(3)-A-L-x(0,1)-Q-x(0,1)-G-V-x(3)-D-x-S-V-A-G-L-G-G-C-P-Y-x(2)-G-A-S-G-N-x-A-T-E-D-L-x-Y-x-L 6: 136.6117 4( 4) H-D-T-x-G-x-A-x(2)-N-x(3)-A-L-x(0,1)-Q-x(0,1)-G-V-x(3)-D-x-S-V-A-G-L-G-G-C-P-Y-x(2)-G-A-S-G-N-x-A-T-E-D-L-x-Y 7: 136.6117 4( 4) H-x-H-D-T-x-G-x-A-x(2)-N-x(3)-A-L-x(0,1)-Q-x(0,1)-G-V-x(3)-D-x-S-V-A-G-L-G-G-C-P-Y-x(2)-G-A-S-G-N-x-A-T-E-D-L 8: 136.1117 4( 4) L-x(1,3)-Q-x(0,1)-G-V-x(3)-D-x-S-V-A-G-L-G-G-C-P-Y-x(2)-G-A-S-G-N-x-A-T-E-D-L-x-Y-x-L-x-G-L-G-x(2)-T-G-V 9: 132.4416 4( 4) G-x(4)-N-x(3)-A-L-x(0,1)-Q-x(0,1)-G-V-x(3)-D-x-S-V-A-G-L-G-G-C-P-Y-x(2)-G-A-S-G-N-x-A-T-E-D-L-x-Y-x-L-x-G-L 10: 132.4416 4( 4) T-x-G-x-A-x(2)-N-x(3)-A-L-x(0,1)-Q-x(0,1)-G-V-x(3)-D-x-S-V-A-G-L-G-G-C-P-Y-x(2)-G-A-S-G-N-x-A-T-E-D-L-x-Y-x-L 11: 132.4416 4( 4) L-x(2)-H-x-H-D-T-x-G-x-A-x(2)-N-x(3)-A-L-x(0,1)-Q-x(0,1)-G-V-x(3)-D-x-S-V-A-G-L-G-G-C-P-Y-x(2)-G-A-S-G-N-x-A-T-E 12: 131.4416 4( 4) G-x(0,2)-V-x(1,3)-D-x-S-V-A-G-L-G-G-C-P-Y-x(2)-G-A-S-G-N-x-A-T-E-D-L-x-Y-x-L-x-G-L-G-x(2)-T-G-V-x-L 13: 129.2716 4( 4) V-x(3)-D-x-S-V-A-G-L-G-G-C-P-Y-x(2)-G-A-S-G-N-x-A-T-E-D-L-x-Y-x-L-x-G-L-G-x(2)-T-G-V-x-L 14: 128.2716 7( 4) V-x(1,3)-D-x-S-V-A-G-L-G-G-C-P-Y-x(2)-G-A-S-G-N-x-A-T-E-D-L-x-Y-x-L-x-G-L-G-x(2)-T-G-V-x-L 15: 128.2716 4( 4) A-x(3)-H-x-H-D-T-x-G-x-A-x(2)-N-x(3)-A-L-x(0,1)-Q-x(0,1)-G-V-x(3)-D-x-S-V-A-G-L-G-G-C-P-Y-x(2)-G-A-S-G-N-x-A-T 16: 128.2716 4( 4) P-x(2)-A-L-x(2)-H-x-H-D-T-x-G-x-A-x(2)-N-x(3)-A-L-x(0,1)-Q-x(0,1)-G-V-x(3)-D-x-S-V-A-G-L-G-G-C-P-Y-x(2)-G-A-S-G-N 17: 125.1015 4( 4) D-x-S-V-A-G-L-G-G-C-P-Y-x(2)-G-A-S-G-N-x-A-T-E-D-L-x-Y-x-L-x-G-L-G-x(2)-T-G-V-x-L 18: 123.6015 9( 4) V-x(2,4)-S-x(0,1)-V-A-G-L-G-G-C-P-Y-x(2)-G-A-S-G-N-x-A-T-E-D-L-x-Y-x-L-x-G-L-G-x(2)-T-G-V-x-L 19: 120.9315 4( 4) S-V-A-G-L-G-G-C-P-Y-x(2)-G-A-S-G-N-x-A-T-E-D-L-x-Y-x-L-x-G-L-G-x(2)-T-G-V-x-L 20: 119.9315 7( 4) A-x(3)-H-x(0,2)-D-T-x-G-x-A-x(2)-N-x(3)-A-L-x(2)-G-V-x(3)-D-x-S-V-A-G-L-G-G-C-P-Y-x(2)-G-A-S-G-N-x-A-T Best Patterns (after refinement phase): fitness hits(seqs) Pattern A 1: 174.0210 4( 4) A-L-x(0,1)-Q-x(0,1)-G-V-[RS]-[TV]-[FV]-D-[AS]-S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T-E-D-L-[LV]-Y-[LM]-L-x-G-L-G-x(2)-T-G-V-[DN]-L B 2: 173.0329 4( 4) L-x(0,1)-Q-x(0,1)-G-V-[RS]-[TV]-[FV]-D-[AS]-S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T-E-D-L-[LV]-Y-[LM]-L-x-G-L-G-x(2)-T-G-V-[DN]-L-[EQ] C 3: 169.9067 4( 4) V-[RS]-[TV]-[FV]-D-[AS]-S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T-E-D-L-[LV]-Y-[LM]-L-x-G-L-G-x(2)-T-G-V-[DN]-L-[EQ]-x-[LV]-x-[DEQ]-[ATV] D 4: 168.9915 4( 4) A-[IL]-[AT]-N-x(3)-A-L-x(0,1)-Q-x(0,1)-G-V-[RS]-[TV]-[FV]-D-[AS]-S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T-E-D-L-[LV]-Y-[LM]-L-x-G-L-G E 5: 168.9915 4( 4) D-T-x-G-x-A-[IL]-[AT]-N-x(3)-A-L-x(0,1)-Q-x(0,1)-G-V-[RS]-[TV]-[FV]-D-[AS]-S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T-E-D-L-[LV]-Y-[LM]-L F 6: 168.9915 4( 4) G-x-A-[IL]-[AT]-N-x(3)-A-L-x(0,1)-Q-x(0,1)-G-V-[RS]-[TV]-[FV]-D-[AS]-S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T-E-D-L-[LV]-Y-[LM]-L-x-G-L G 7: 166.6770 4( 4) N-x(3)-A-L-x(0,1)-Q-x(0,1)-G-V-[RS]-[TV]-[FV]-D-[AS]-S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T-E-D-L-[LV]-Y-[LM]-L-x-G-L-G-x(2)-T-G H 8: 166.6680 4( 4) D-[AS]-S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T-E-D-L-[LV]-Y-[LM]-L-x-G-L-G-x(2)-T-G-V-[DN]-L-[EQ]-x-[LV]-x-[DEQ]-[ATV]-G-[DNTV]-x-I I 9: 165.4246 4( 4) H-D-T-x-G-x-A-[IL]-[AT]-N-x(3)-A-L-x(0,1)-Q-x(0,1)-G-V-[RS]-[TV]-[FV]-D-[AS]-S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T-E-D-L-[LV]-Y J 10: 165.2770 4( 4) S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T-E-D-L-[LV]-Y-[LM]-L-x-G-L-G-x(2)-T-G-V-[DN]-L-[EQ]-x-[LV]-x-[DEQ]-[ATV]-G-[DNTV]-x-I-[CS]-[ANQ] K 11: 165.1809 4( 4) L-x(1,3)-Q-x(0,1)-G-V-[RS]-[TV]-[FV]-D-[AS]-S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T-E-D-L-[LV]-Y-[LM]-L-x-G-L-G-x(2)-T-G-V-[DN] L 12: 164.8215 4( 4) T-x-G-x-A-[IL]-[AT]-N-x(3)-A-L-x(0,1)-Q-x(0,1)-G-V-[RS]-[TV]-[FV]-D-[AS]-S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T-E-D-L-[LV]-Y-[LM]-L M 13: 164.4286 4( 4) A-L-[AG]-[GV]-H-x-H-D-T-x-G-x-A-[IL]-[AT]-N-x(3)-A-L-x(0,1)-Q-x(0,1)-G-V-[RS]-[TV]-[FV]-D-[AS]-S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T N 14: 164.4286 4( 4) L-[AG]-[GV]-H-x-H-D-T-x-G-x-A-[IL]-[AT]-N-x(3)-A-L-x(0,1)-Q-x(0,1)-G-V-[RS]-[TV]-[FV]-D-[AS]-S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T-E O 15: 162.8674 4( 4) P-[LV]-[AGT]-A-L-[AG]-[GV]-H-x-H-D-T-x-G-x-A-[IL]-[AT]-N-x(3)-A-L-x(0,1)-Q-x(0,1)-G-V-[RS]-[TV]-[FV]-D-[AS]-S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N P 16: 162.2409 4( 4) H-x-H-D-T-x-G-x-A-[IL]-[AT]-N-x(3)-A-L-x(0,1)-Q-x(0,1)-G-V-[RS]-[TV]-[FV]-D-[AS]-S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T-E-D-L Q 17: 159.3041 7( 4) V-x(1,3)-D-[AS]-S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T-E-D-L-[LV]-Y-[LM]-L-x-G-L-G-x(2)-T-G-V-[DN]-L-[EQ]-x-[LV]-x-[DEQ]-[ATV] R 18: 157.2739 4( 4) G-x(0,2)-V-x(1,3)-D-[AS]-S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T-E-D-L-[LV]-Y-[LM]-L-x-G-L-G-x(2)-T-G-V-[DN]-L-[EQ]-x-[LV] S 19: 151.4549 9( 4) V-x(2,4)-S-x(0,1)-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T-E-D-L-[LV]-Y-[LM]-L-x-G-L-G-x(2)-T-G-V-[DN]-L-[EQ]-x-[LV]-x-[DEQ]-[ATV] T 20: 148.8433 7( 4) A-x(3)-H-x(0,2)-D-T-x-G-x-A-[IL]-[AT]-N-x(3)-A-L-[AQ]-x-G-V-[RS]-[TV]-[FV]-D-[AS]-S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T Best patterns with alignements: fitness hits(seqs) Pattern A 1: 174.0210 4( 4) A-L-x(0,1)-Q-x(0,1)-G-V-[RS]-[TV]-[FV]-D-[AS]-S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T-E-D-L-[LV]-Y-[LM]-L-x-G-L-G-x(2)-T-G-V-[DN]-L Occurences: 4(4) HMGL_CHICK : 221- 269: anilv AL-QmGVSVVDASVAGLGGCPYAqGASGNVATEDLVYMLnGLGihTGVDL qklmd HMGL_HUMAN : 248- 296: tntlm AL-QmGVSVVDSSVAGLGGCPYAqGASGNLATEDLVYMLeGLGihTGVNL qklle HMGL_MOUSE : 248- 296: antlv AL-QmGVSVVDSSVAGLGGCPYAkGASGNLATEDLVYMLnGLGihTGVNL qklle HMGL_PSEMV : 219- 267: anvha ALaQ-GVRTFDSSVAGLGGCPYSpGASGNVATEDLLYLLhGLGysTGVDL eavaq B 2: 173.0329 4( 4) L-x(0,1)-Q-x(0,1)-G-V-[RS]-[TV]-[FV]-D-[AS]-S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T-E-D-L-[LV]-Y-[LM]-L-x-G-L-G-x(2)-T-G-V-[DN]-L-[EQ] Occurences: 4(4) HMGL_CHICK : 222- 270: nilva L-QmGVSVVDASVAGLGGCPYAqGASGNVATEDLVYMLnGLGihTGVDLQ klmdt HMGL_HUMAN : 249- 297: ntlma L-QmGVSVVDSSVAGLGGCPYAqGASGNLATEDLVYMLeGLGihTGVNLQ kllea HMGL_MOUSE : 249- 297: ntlva L-QmGVSVVDSSVAGLGGCPYAkGASGNLATEDLVYMLnGLGihTGVNLQ kllea HMGL_PSEMV : 220- 268: nvhaa LaQ-GVRTFDSSVAGLGGCPYSpGASGNVATEDLLYLLhGLGysTGVDLE avaqv C 3: 169.9067 4( 4) V-[RS]-[TV]-[FV]-D-[AS]-S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T-E-D-L-[LV]-Y-[LM]-L-x-G-L-G-x(2)-T-G-V-[DN]-L-[EQ]-x-[LV]-x-[DEQ]-[ATV] Occurences: 4(4) HMGL_CHICK : 226- 275: alqmg VSVVDASVAGLGGCPYAqGASGNVATEDLVYMLnGLGihTGVDLQkLmDT gtfic HMGL_HUMAN : 253- 302: alqmg VSVVDSSVAGLGGCPYAqGASGNLATEDLVYMLeGLGihTGVNLQkLlEA gnfic HMGL_MOUSE : 253- 302: alqmg VSVVDSSVAGLGGCPYAkGASGNLATEDLVYMLnGLGihTGVNLQkLlEA gdfic HMGL_PSEMV : 224- 273: alaqg VRTFDSSVAGLGGCPYSpGASGNVATEDLLYLLhGLGysTGVDLEaVaQV gvris D 4: 168.9915 4( 4) A-[IL]-[AT]-N-x(3)-A-L-x(0,1)-Q-x(0,1)-G-V-[RS]-[TV]-[FV]-D-[AS]-S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T-E-D-L-[LV]-Y-[LM]-L-x-G-L-G Occurences: 4(4) HMGL_CHICK : 214- 262: dtygq ALANilvAL-QmGVSVVDASVAGLGGCPYAqGASGNVATEDLVYMLnGLG ihtgv HMGL_HUMAN : 241- 289: dtygq ALTNtlmAL-QmGVSVVDSSVAGLGGCPYAqGASGNLATEDLVYMLeGLG ihtgv HMGL_MOUSE : 241- 289: dtigq ALANtlvAL-QmGVSVVDSSVAGLGGCPYAkGASGNLATEDLVYMLnGLG ihtgv HMGL_PSEMV : 212- 260: dtwgm AIANvhaALaQ-GVRTFDSSVAGLGGCPYSpGASGNVATEDLLYLLhGLG ystgv E 5: 168.9915 4( 4) D-T-x-G-x-A-[IL]-[AT]-N-x(3)-A-L-x(0,1)-Q-x(0,1)-G-V-[RS]-[TV]-[FV]-D-[AS]-S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T-E-D-L-[LV]-Y-[LM]-L Occurences: 4(4) HMGL_CHICK : 209- 258: avhch DTyGqALANilvAL-QmGVSVVDASVAGLGGCPYAqGASGNVATEDLVYML nglgi HMGL_HUMAN : 236- 285: avhch DTyGqALTNtlmAL-QmGVSVVDSSVAGLGGCPYAqGASGNLATEDLVYML eglgi HMGL_MOUSE : 236- 285: gvhch DTiGqALANtlvAL-QmGVSVVDSSVAGLGGCPYAkGASGNLATEDLVYML nglgi HMGL_PSEMV : 207- 256: aghfh DTwGmAIANvhaALaQ-GVRTFDSSVAGLGGCPYSpGASGNVATEDLLYLL hglgy F 6: 168.9915 4( 4) G-x-A-[IL]-[AT]-N-x(3)-A-L-x(0,1)-Q-x(0,1)-G-V-[RS]-[TV]-[FV]-D-[AS]-S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T-E-D-L-[LV]-Y-[LM]-L-x-G-L Occurences: 4(4) HMGL_CHICK : 212- 261: chdty GqALANilvAL-QmGVSVVDASVAGLGGCPYAqGASGNVATEDLVYMLnGL gihtg HMGL_HUMAN : 239- 288: chdty GqALTNtlmAL-QmGVSVVDSSVAGLGGCPYAqGASGNLATEDLVYMLeGL gihtg HMGL_MOUSE : 239- 288: chdti GqALANtlvAL-QmGVSVVDSSVAGLGGCPYAkGASGNLATEDLVYMLnGL gihtg HMGL_PSEMV : 210- 259: fhdtw GmAIANvhaALaQ-GVRTFDSSVAGLGGCPYSpGASGNVATEDLLYLLhGL gystg G 7: 166.6770 4( 4) N-x(3)-A-L-x(0,1)-Q-x(0,1)-G-V-[RS]-[TV]-[FV]-D-[AS]-S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T-E-D-L-[LV]-Y-[LM]-L-x-G-L-G-x(2)-T-G Occurences: 4(4) HMGL_CHICK : 217- 266: gqala NilvAL-QmGVSVVDASVAGLGGCPYAqGASGNVATEDLVYMLnGLGihTG vdlqk HMGL_HUMAN : 244- 293: gqalt NtlmAL-QmGVSVVDSSVAGLGGCPYAqGASGNLATEDLVYMLeGLGihTG vnlqk HMGL_MOUSE : 244- 293: gqala NtlvAL-QmGVSVVDSSVAGLGGCPYAkGASGNLATEDLVYMLnGLGihTG vnlqk HMGL_PSEMV : 215- 264: gmaia NvhaALaQ-GVRTFDSSVAGLGGCPYSpGASGNVATEDLLYLLhGLGysTG vdlea H 8: 166.6680 4( 4) D-[AS]-S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T-E-D-L-[LV]-Y-[LM]-L-x-G-L-G-x(2)-T-G-V-[DN]-L-[EQ]-x-[LV]-x-[DEQ]-[ATV]-G-[DNTV]-x-I Occurences: 4(4) HMGL_CHICK : 230- 279: gvsvv DASVAGLGGCPYAqGASGNVATEDLVYMLnGLGihTGVDLQkLmDTGTfI cnaln HMGL_HUMAN : 257- 306: gvsvv DSSVAGLGGCPYAqGASGNLATEDLVYMLeGLGihTGVNLQkLlEAGNfI cqaln HMGL_MOUSE : 257- 306: gvsvv DSSVAGLGGCPYAkGASGNLATEDLVYMLnGLGihTGVNLQkLlEAGDfI cqaln HMGL_PSEMV : 228- 277: gvrtf DSSVAGLGGCPYSpGASGNVATEDLLYLLhGLGysTGVDLEaVaQVGVrI saqlg I 9: 165.4246 4( 4) H-D-T-x-G-x-A-[IL]-[AT]-N-x(3)-A-L-x(0,1)-Q-x(0,1)-G-V-[RS]-[TV]-[FV]-D-[AS]-S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T-E-D-L-[LV]-Y Occurences: 4(4) HMGL_CHICK : 208- 256: lavhc HDTyGqALANilvAL-QmGVSVVDASVAGLGGCPYAqGASGNVATEDLVY mlngl HMGL_HUMAN : 235- 283: lavhc HDTyGqALTNtlmAL-QmGVSVVDSSVAGLGGCPYAqGASGNLATEDLVY mlegl HMGL_MOUSE : 235- 283: lgvhc HDTiGqALANtlvAL-QmGVSVVDSSVAGLGGCPYAkGASGNLATEDLVY mlngl HMGL_PSEMV : 206- 254: laghf HDTwGmAIANvhaALaQ-GVRTFDSSVAGLGGCPYSpGASGNVATEDLLY llhgl J 10: 165.2770 4( 4) S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T-E-D-L-[LV]-Y-[LM]-L-x-G-L-G-x(2)-T-G-V-[DN]-L-[EQ]-x-[LV]-x-[DEQ]-[ATV]-G-[DNTV]-x-I-[CS]-[ANQ] Occurences: 4(4) HMGL_CHICK : 232- 281: svvda SVAGLGGCPYAqGASGNVATEDLVYMLnGLGihTGVDLQkLmDTGTfICN alnrr HMGL_HUMAN : 259- 308: svvds SVAGLGGCPYAqGASGNLATEDLVYMLeGLGihTGVNLQkLlEAGNfICQ alnrk HMGL_MOUSE : 259- 308: svvds SVAGLGGCPYAkGASGNLATEDLVYMLnGLGihTGVNLQkLlEAGDfICQ alnrk HMGL_PSEMV : 230- 279: rtfds SVAGLGGCPYSpGASGNVATEDLLYLLhGLGysTGVDLEaVaQVGVrISA qlgta K 11: 165.1809 4( 4) L-x(1,3)-Q-x(0,1)-G-V-[RS]-[TV]-[FV]-D-[AS]-S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T-E-D-L-[LV]-Y-[LM]-L-x-G-L-G-x(2)-T-G-V-[DN] Occurences: 4(4) HMGL_CHICK : 219- 268: alani LvalQmGVSVVDASVAGLGGCPYAqGASGNVATEDLVYMLnGLGihTGVD lqklm HMGL_HUMAN : 246- 295: altnt LmalQmGVSVVDSSVAGLGGCPYAqGASGNLATEDLVYMLeGLGihTGVN lqkll HMGL_MOUSE : 246- 295: alant LvalQmGVSVVDSSVAGLGGCPYAkGASGNLATEDLVYMLnGLGihTGVN lqkll HMGL_PSEMV : 220- 266: nvhaa La--Q-GVRTFDSSVAGLGGCPYSpGASGNVATEDLLYLLhGLGysTGVD leava L 12: 164.8215 4( 4) T-x-G-x-A-[IL]-[AT]-N-x(3)-A-L-x(0,1)-Q-x(0,1)-G-V-[RS]-[TV]-[FV]-D-[AS]-S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T-E-D-L-[LV]-Y-[LM]-L Occurences: 4(4) HMGL_CHICK : 210- 258: vhchd TyGqALANilvAL-QmGVSVVDASVAGLGGCPYAqGASGNVATEDLVYML nglgi HMGL_HUMAN : 237- 285: vhchd TyGqALTNtlmAL-QmGVSVVDSSVAGLGGCPYAqGASGNLATEDLVYML eglgi HMGL_MOUSE : 237- 285: vhchd TiGqALANtlvAL-QmGVSVVDSSVAGLGGCPYAkGASGNLATEDLVYML nglgi HMGL_PSEMV : 208- 256: ghfhd TwGmAIANvhaALaQ-GVRTFDSSVAGLGGCPYSpGASGNVATEDLLYLL hglgy M 13: 164.4286 4( 4) A-L-[AG]-[GV]-H-x-H-D-T-x-G-x-A-[IL]-[AT]-N-x(3)-A-L-x(0,1)-Q-x(0,1)-G-V-[RS]-[TV]-[FV]-D-[AS]-S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T Occurences: 4(4) HMGL_CHICK : 202- 251: evpvg ALAVHcHDTyGqALANilvAL-QmGVSVVDASVAGLGGCPYAqGASGNVAT edlvy HMGL_HUMAN : 229- 278: evpla ALAVHcHDTyGqALTNtlmAL-QmGVSVVDSSVAGLGGCPYAqGASGNLAT edlvy HMGL_MOUSE : 229- 278: evpvt ALGVHcHDTiGqALANtlvAL-QmGVSVVDSSVAGLGGCPYAkGASGNLAT edlvy HMGL_PSEMV : 200- 249: qlpva ALAGHfHDTwGmAIANvhaALaQ-GVRTFDSSVAGLGGCPYSpGASGNVAT edlly N 14: 164.4286 4( 4) L-[AG]-[GV]-H-x-H-D-T-x-G-x-A-[IL]-[AT]-N-x(3)-A-L-x(0,1)-Q-x(0,1)-G-V-[RS]-[TV]-[FV]-D-[AS]-S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T-E Occurences: 4(4) HMGL_CHICK : 203- 252: vpvga LAVHcHDTyGqALANilvAL-QmGVSVVDASVAGLGGCPYAqGASGNVATE dlvym HMGL_HUMAN : 230- 279: vplaa LAVHcHDTyGqALTNtlmAL-QmGVSVVDSSVAGLGGCPYAqGASGNLATE dlvym HMGL_MOUSE : 230- 279: vpvta LGVHcHDTiGqALANtlvAL-QmGVSVVDSSVAGLGGCPYAkGASGNLATE dlvym HMGL_PSEMV : 201- 250: lpvaa LAGHfHDTwGmAIANvhaALaQ-GVRTFDSSVAGLGGCPYSpGASGNVATE dllyl O 15: 162.8674 4( 4) P-[LV]-[AGT]-A-L-[AG]-[GV]-H-x-H-D-T-x-G-x-A-[IL]-[AT]-N-x(3)-A-L-x(0,1)-Q-x(0,1)-G-V-[RS]-[TV]-[FV]-D-[AS]-S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N Occurences: 4(4) HMGL_CHICK : 199- 248: vmkev PVGALAVHcHDTyGqALANilvAL-QmGVSVVDASVAGLGGCPYAqGASGN vated HMGL_HUMAN : 226- 275: vmqev PLAALAVHcHDTyGqALTNtlmAL-QmGVSVVDSSVAGLGGCPYAqGASGN lated HMGL_MOUSE : 226- 275: vmhev PVTALGVHcHDTiGqALANtlvAL-QmGVSVVDSSVAGLGGCPYAkGASGN lated HMGL_PSEMV : 197- 246: carql PVAALAGHfHDTwGmAIANvhaALaQ-GVRTFDSSVAGLGGCPYSpGASGN vated P 16: 162.2409 4( 4) H-x-H-D-T-x-G-x-A-[IL]-[AT]-N-x(3)-A-L-x(0,1)-Q-x(0,1)-G-V-[RS]-[TV]-[FV]-D-[AS]-S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T-E-D-L Occurences: 4(4) HMGL_CHICK : 206- 254: galav HcHDTyGqALANilvAL-QmGVSVVDASVAGLGGCPYAqGASGNVATEDL vymln HMGL_HUMAN : 233- 281: aalav HcHDTyGqALTNtlmAL-QmGVSVVDSSVAGLGGCPYAqGASGNLATEDL vymle HMGL_MOUSE : 233- 281: talgv HcHDTiGqALANtlvAL-QmGVSVVDSSVAGLGGCPYAkGASGNLATEDL vymln HMGL_PSEMV : 204- 252: aalag HfHDTwGmAIANvhaALaQ-GVRTFDSSVAGLGGCPYSpGASGNVATEDL lyllh Q 17: 159.3041 7( 4) V-x(1,3)-D-[AS]-S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T-E-D-L-[LV]-Y-[LM]-L-x-G-L-G-x(2)-T-G-V-[DN]-L-[EQ]-x-[LV]-x-[DEQ]-[ATV] Occurences: 7(4) HMGL_CHICK : 226- 275: alqmg VsvvDASVAGLGGCPYAqGASGNVATEDLVYMLnGLGihTGVDLQkLmDT gtfic HMGL_CHICK : 228- 275: qmgvs Vv--DASVAGLGGCPYAqGASGNVATEDLVYMLnGLGihTGVDLQkLmDT gtfic HMGL_HUMAN : 253- 302: alqmg VsvvDSSVAGLGGCPYAqGASGNLATEDLVYMLeGLGihTGVNLQkLlEA gnfic HMGL_HUMAN : 255- 302: qmgvs Vv--DSSVAGLGGCPYAqGASGNLATEDLVYMLeGLGihTGVNLQkLlEA gnfic HMGL_MOUSE : 253- 302: alqmg VsvvDSSVAGLGGCPYAkGASGNLATEDLVYMLnGLGihTGVNLQkLlEA gdfic HMGL_MOUSE : 255- 302: qmgvs Vv--DSSVAGLGGCPYAkGASGNLATEDLVYMLnGLGihTGVNLQkLlEA gdfic HMGL_PSEMV : 224- 273: alaqg VrtfDSSVAGLGGCPYSpGASGNVATEDLLYLLhGLGysTGVDLEaVaQV gvris R 18: 157.2739 4( 4) G-x(0,2)-V-x(1,3)-D-[AS]-S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T-E-D-L-[LV]-Y-[LM]-L-x-G-L-G-x(2)-T-G-V-[DN]-L-[EQ]-x-[LV] Occurences: 4(4) HMGL_CHICK : 225- 272: valqm GvsVv--DASVAGLGGCPYAqGASGNVATEDLVYMLnGLGihTGVDLQkL mdtgt HMGL_CHICK : 225- 272: valqm G--VsvvDASVAGLGGCPYAqGASGNVATEDLVYMLnGLGihTGVDLQkL mdtgt HMGL_HUMAN : 252- 299: malqm GvsVv--DSSVAGLGGCPYAqGASGNLATEDLVYMLeGLGihTGVNLQkL leagn HMGL_HUMAN : 252- 299: malqm G--VsvvDSSVAGLGGCPYAqGASGNLATEDLVYMLeGLGihTGVNLQkL leagn HMGL_MOUSE : 252- 299: valqm GvsVv--DSSVAGLGGCPYAkGASGNLATEDLVYMLnGLGihTGVNLQkL leagd HMGL_MOUSE : 252- 299: valqm G--VsvvDSSVAGLGGCPYAkGASGNLATEDLVYMLnGLGihTGVNLQkL leagd HMGL_PSEMV : 223- 270: aalaq G--VrtfDSSVAGLGGCPYSpGASGNVATEDLLYLLhGLGysTGVDLEaV aqvgv S 19: 151.4549 9( 4) V-x(2,4)-S-x(0,1)-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T-E-D-L-[LV]-Y-[LM]-L-x-G-L-G-x(2)-T-G-V-[DN]-L-[EQ]-x-[LV]-x-[DEQ]-[ATV] Occurences: 9(4) HMGL_CHICK : 228- 275: qmgvs Vvda-S-VAGLGGCPYAqGASGNVATEDLVYMLnGLGihTGVDLQkLmDT gtfic HMGL_CHICK : 229- 275: mgvsv Vda--S-VAGLGGCPYAqGASGNVATEDLVYMLnGLGihTGVDLQkLmDT gtfic HMGL_HUMAN : 253- 302: alqmg VsvvdSsVAGLGGCPYAqGASGNLATEDLVYMLeGLGihTGVNLQkLlEA gnfic HMGL_HUMAN : 255- 302: qmgvs Vvds-S-VAGLGGCPYAqGASGNLATEDLVYMLeGLGihTGVNLQkLlEA gnfic HMGL_HUMAN : 255- 302: qmgvs Vvd--SsVAGLGGCPYAqGASGNLATEDLVYMLeGLGihTGVNLQkLlEA gnfic HMGL_HUMAN : 256- 302: mgvsv Vds--S-VAGLGGCPYAqGASGNLATEDLVYMLeGLGihTGVNLQkLlEA gnfic HMGL_MOUSE : 253- 302: alqmg VsvvdSsVAGLGGCPYAkGASGNLATEDLVYMLnGLGihTGVNLQkLlEA gdfic HMGL_MOUSE : 255- 302: qmgvs Vvds-S-VAGLGGCPYAkGASGNLATEDLVYMLnGLGihTGVNLQkLlEA gdfic HMGL_MOUSE : 255- 302: qmgvs Vvd--SsVAGLGGCPYAkGASGNLATEDLVYMLnGLGihTGVNLQkLlEA gdfic HMGL_MOUSE : 256- 302: mgvsv Vds--S-VAGLGGCPYAkGASGNLATEDLVYMLnGLGihTGVNLQkLlEA gdfic HMGL_PSEMV : 224- 273: alaqg VrtfdSsVAGLGGCPYSpGASGNVATEDLLYLLhGLGysTGVDLEaVaQV gvris T 20: 148.8433 7( 4) A-x(3)-H-x(0,2)-D-T-x-G-x-A-[IL]-[AT]-N-x(3)-A-L-[AQ]-x-G-V-[RS]-[TV]-[FV]-D-[AS]-S-V-A-G-L-G-G-C-P-Y-[AS]-x-G-A-S-G-N-[LV]-A-T Occurences: 7(4) HMGL_CHICK : 202- 251: evpvg AlavHchDTyGqALANilvALQmGVSVVDASVAGLGGCPYAqGASGNVAT edlvy HMGL_CHICK : 204- 251: pvgal AvhcH--DTyGqALANilvALQmGVSVVDASVAGLGGCPYAqGASGNVAT edlvy HMGL_HUMAN : 229- 278: evpla AlavHchDTyGqALTNtlmALQmGVSVVDSSVAGLGGCPYAqGASGNLAT edlvy HMGL_HUMAN : 231- 278: plaal AvhcH--DTyGqALTNtlmALQmGVSVVDSSVAGLGGCPYAqGASGNLAT edlvy HMGL_MOUSE : 229- 278: evpvt AlgvHchDTiGqALANtlvALQmGVSVVDSSVAGLGGCPYAkGASGNLAT edlvy HMGL_PSEMV : 200- 249: qlpva AlagHfhDTwGmAIANvhaALAqGVRTFDSSVAGLGGCPYSpGASGNVAT edlly HMGL_PSEMV : 202- 249: pvaal AghfH--DTwGmAIANvhaALAqGVRTFDSSVAGLGGCPYSpGASGNVAT edlly Number of patterns evaluated by Pratt:51663 Total running time: 7 seconds